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Conserved domains on  [gi|1462331590|gb|AXP34555|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Myrmelastes schistaceus]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 2.86e-166

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 466.99  E-value: 2.86e-166
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590   1 MNPQAKLLSITSLLLGTTITISSNHWMMAWTGLEINTLAILPLISKSHHPRAVEATTKYFLVQAAASALLLFSSMTNAWH 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  81 TGQWDITQLSHPTSCLLLTTAISIKLGLVPFHFWFPEVLQGTSLATGLLLATALKFPPITLFLLTSSSLNPTLLTLMAIA 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 161 STALGGWAGLNQTQTRKIMAFSSISHLGWMAIILVYNPKLTLITFYIYCLMTIPIFLTLNTIKTLKLATMSTTWTKTPSL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 241 TATLMLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYCATITLPPNSSNHMKQWQTNKS 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1462331590 321 TNMTITTFITLSTMLLPLSPMIFTTP 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 2.86e-166

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 466.99  E-value: 2.86e-166
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590   1 MNPQAKLLSITSLLLGTTITISSNHWMMAWTGLEINTLAILPLISKSHHPRAVEATTKYFLVQAAASALLLFSSMTNAWH 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  81 TGQWDITQLSHPTSCLLLTTAISIKLGLVPFHFWFPEVLQGTSLATGLLLATALKFPPITLFLLTSSSLNPTLLTLMAIA 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 161 STALGGWAGLNQTQTRKIMAFSSISHLGWMAIILVYNPKLTLITFYIYCLMTIPIFLTLNTIKTLKLATMSTTWTKTPSL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 241 TATLMLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYCATITLPPNSSNHMKQWQTNKS 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1462331590 321 TNMTITTFITLSTMLLPLSPMIFTTP 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-298 1.24e-33

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 129.08  E-value: 1.24e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  14 LLGTTITISSNHWMMAWTGLEINTLAILPLIS-KSHHPRAVEATTKYFLVQAAASALLLF-SSMTNAWhTGQWDITQLSH 91
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIAA 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  92 PTS------------CLLLTTAISIKLGLVPFHFWFPEVLQGTSLATGLLLATALK----FPPITLFLLTSSSLNP---T 152
Cdd:COG1007   191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPGLAAdwqL 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 153 LLTLMAIASTALGGWAGLNQTQTRKIMAFSSISHLGWMAIILVYNPKLTL--ITFY--IYCLMTIPIFLTLNTIK----- 223
Cdd:COG1007   271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYllAYLFMNLGAFAVILLLSrkgge 350

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1462331590 224 TLKLATMSTTWTKTPSLTATLMLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAY 298
Cdd:COG1007   351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 1.26e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 106.63  E-value: 1.26e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  23 SNHWMMAWTGLEINTLAILPLI-SKSHHPRAVEATTKYFLVQAAASALLLFSSMTNAWHTGQWDITQLSHPTSC------ 95
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGglnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  96 -----LLLTTAISIKLGLVPFHFWFPEVLQGTSLATGLLLA-TALKFPPI-----TLFLLTSSSLNPTLLTLMAIASTAL 164
Cdd:pfam00361  81 llllfLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYglirrSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 165 GGWAGLNQTQTRKIMAFSSISHLGWMAIIL----VYNPKLTLITFYIYCLMTIPIFL-----TLNTIKTLKLATMSTTWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1462331590 236 KTPSLTATLMLMLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-297 1.06e-25

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 106.96  E-value: 1.06e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  14 LLGTTITISSNHWMMAWTGLEINTLAILPLIS-KSHHPRAVEATTKYFLVQAAASALLLFSSMTNAWHTGQWDITQLSHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  93 TSC------------LLLTTAISIKLGLVPFHFWFPEVLQGTSLATGLLLATALK----FPPITLFLLTSSSLNPT---L 153
Cdd:TIGR01770 192 LSNgmlnisllllgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaifAVFLRLFLYILFGFSEAwqiF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 154 LTLMAIASTALGGWAGLNQTQTRKIMAFSSISHLGWMAIILVYNPKLTL--ITFY--IYCLMTIPIFLTLNTIKTLK--- 226
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkaVLFYifIYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1462331590 227 ---LATMSTTWTKTPSLTATLMLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLA 297
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 2.86e-166

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 466.99  E-value: 2.86e-166
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590   1 MNPQAKLLSITSLLLGTTITISSNHWMMAWTGLEINTLAILPLISKSHHPRAVEATTKYFLVQAAASALLLFSSMTNAWH 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  81 TGQWDITQLSHPTSCLLLTTAISIKLGLVPFHFWFPEVLQGTSLATGLLLATALKFPPITLFLLTSSSLNPTLLTLMAIA 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 161 STALGGWAGLNQTQTRKIMAFSSISHLGWMAIILVYNPKLTLITFYIYCLMTIPIFLTLNTIKTLKLATMSTTWTKTPSL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 241 TATLMLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYCATITLPPNSSNHMKQWQTNKS 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1462331590 321 TNMTITTFITLSTMLLPLSPMIFTTP 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-344 3.17e-138

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 396.10  E-value: 3.17e-138
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590   1 MNPQAKLLSITSLLLGTTITISSNHWMMAWTGLEINTLAILPLISKSHHPRAVEATTKYFLVQAAASALLLFSSMTNAWH 80
Cdd:MTH00135    1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  81 TGQWDITQLSHPTSCLLLTTAISIKLGLVPFHFWFPEVLQGTSLATGLLLATALKFPPITLFLLTSSSlNPTLLTLMAIA 160
Cdd:MTH00135   81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 161 STALGGWAGLNQTQTRKIMAFSSISHLGWMAIILVYNPKLTLITFYIYCLMTIPIFLTLNTIKTLKLATMSTTWTKTPSL 240
Cdd:MTH00135  160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 241 TATLMLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYCATITLPPNSSNHMKQWQT-NK 319
Cdd:MTH00135  240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLpST 319

                         330       340
                  ....*....|....*....|....*
gi 1462331590 320 STNMTITTFITLSTMLLPLSPMIFT 344
Cdd:MTH00135  320 QLTLPLAISTTATLMLLPLTPAILA 344
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-344 3.37e-137

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 393.52  E-value: 3.37e-137
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590   1 MNPQAKLLSITSLLLGTTITISSNHWMMAWTGLEINTLAILPLISKSHHPRAVEATTKYFLVQAAASALLLFSSMTNAWH 80
Cdd:MTH00070    1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  81 TGQWDITQLSHPTSCLLLTTAISIKLGLVPFHFWFPEVLQGTSLATGLLLATALKFPPITLFLLTSSSLNPTLLTLMAIA 160
Cdd:MTH00070   81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 161 STALGGWAGLNQTQTRKIMAFSSISHLGWMAIILVYNPKLTLITFYIYCLMTIPIFLTLNTIKTLKLATMSTTWTKTPSL 240
Cdd:MTH00070  161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 241 TATLMLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYCATITLPPNSSNHMKQWQTNKS 320
Cdd:MTH00070  241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                         330       340
                  ....*....|....*....|....
gi 1462331590 321 TNMTITTFITLSTMLLPLSPMIFT 344
Cdd:MTH00070  321 TNNLLSLTIILSLMLLPITPTILN 344
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-344 1.82e-124

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 361.09  E-value: 1.82e-124
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590   1 MNPQAKLLSITSLLLGTTITISSNHWMMAWTGLEINTLAILPLISKSHHPRAVEATTKYFLVQAAASALLLFSSMTNAWH 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  81 TGQWDITQLSHPTSCLLLTTAISIKLGLVPFHFWFPEVLQGTSLATGLLLATALKFPPITLFLLTSSSLNPTLLTLMAIA 160
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 161 STALGGWAGLNQTQTRKIMAFSSISHLGWMAIILVYNPKLTLITFYIYCLMTIPIFLTLNTIKTLKLATMSTTWTKTPSL 240
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 241 TATLMLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYCATITLPPNSSNHMKQWQTNKS 320
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320

                         330       340
                  ....*....|....*....|....*
gi 1462331590 321 TNMT-ITTFITLSTMLLPLSPMIFT 344
Cdd:MTH00105  321 KPMTlLPTLIILSTMLLPLTPMLSI 345
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-346 2.14e-102

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 304.97  E-value: 2.14e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590   1 MNPQAKLLSITSLLLGTTITISSNHWMMAWTGLEINTLAILPLISKSHHPRAVEATTKYFLVQAAASALLLFSSMTNAWH 80
Cdd:MTH00200    1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  81 TGQWDITQLSHPTSCLLLTTAISIKLGLVPFHFWFPEVLQGTSLATGLLLATALKFPPITLFLLTSSSLNPTLLTLMAIA 160
Cdd:MTH00200   81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 161 STALGGWAGLNQTQTRKIMAFSSISHLGWMAIILVYNPKLTLITFYIYCLMTIPIFLTLNTIKTLKLATMSTTWTKTPSL 240
Cdd:MTH00200  161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 241 TATLMLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYCATITLPPNSSNHMKQWQTNKS 320
Cdd:MTH00200  241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                         330       340
                  ....*....|....*....|....*.
gi 1462331590 321 TNMTITTFITLSTMLLPLSPMIFTTP 346
Cdd:MTH00200  321 SNLLVGLLLLLSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-336 5.72e-89

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 270.65  E-value: 5.72e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590   1 MNPQAKLLSITSLLLGTTITISSNHWMMAWTGLEINTLAILPLISKSHHPRAVEATTKYFLVQAAASALLLFSSMTNAWH 80
Cdd:MTH00041    1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  81 TGQWDITQLSHPTSCLLLTTAISIKLGLVPFHFWFPEVLQGTSLATGLLLATALKFPPITLFLLTSSSLNPTLLTLMAIA 160
Cdd:MTH00041   81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 161 STALGGWAGLNQTQTRKIMAFSSISHLGWMAIILVYNPKLTLITFYIYCLMTIPIFLTLNTIKTLKLATMSTTWTKTPSL 240
Cdd:MTH00041  161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 241 TATLMLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYCATITLPPNSSNHMKQWQTNKS 320
Cdd:MTH00041  241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320

                         330
                  ....*....|....*.
gi 1462331590 321 TNMTITTFITLSTMLL 336
Cdd:MTH00041  321 ITVYGVILSILSSISI 336
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-343 2.54e-64

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 206.98  E-value: 2.54e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590   1 MNPQAKLLSITSLLLGTTITISSNHWMMAWTGLEINTLAILPLISKSHHPRAVEATTKYFLVQAAASALLLFSSMTNAWh 80
Cdd:MTH00160    2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  81 tgqwdITQLSHPTSCLLLTTAISIKLGLVPFHFWFPEVLQGTSLATGLLLATALKFPPITLFlltSSSLNPTLLTLMAIA 160
Cdd:MTH00160   81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILL---SYLINNNFIIIIIIL 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 161 STALGGWAGLNQTQTRKIMAFSSISHLGWMAIILVYNPKLTLITFYIYCLMTIPIFLTLNTIKTLKLATMSTTWTKTPSL 240
Cdd:MTH00160  153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 241 TATLMLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYCAtITLPPNSSNHMKQWQTNKS 320
Cdd:MTH00160  233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSS-LMLNYNKNKWNLKKKKNKF 311

                         330       340
                  ....*....|....*....|...
gi 1462331590 321 tNMTITTFITLSTMLLPLSPMIF 343
Cdd:MTH00160  312 -SLILNFLSFISLFGLILSSLLF 333
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-336 3.69e-54

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 180.47  E-value: 3.69e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590   5 AKLLSITSLLLGTTITISSNHWMMAWTGLEINTLAILPLISKSHHPRAVEATTKYFLVQAAASALLLFSSMTNAWHTGQW 84
Cdd:MTH00144    5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  85 DITqlshptscLLLTTAISIKLGLVPFHFWFPEVLQGTSLATGLLLATALKFPPitLFLLTSSSLNPTLLT---LMAIAS 161
Cdd:MTH00144   85 FSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAP--LFLLSNFLDLYWLAYllcVISVLS 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 162 TALGGWAGLNQTQTRKIMAFSSISHLGWMAIILVYNPKLTLITFYIYCLMTIPIFLTLNTiKTLKLATMSTTWTKTPSLT 241
Cdd:MTH00144  155 ALVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWS-GDSGSMKDLGSLKPSYKTG 233

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 242 ATLMLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYCATItlppnSSNHMKQWQTNKST 321
Cdd:MTH00144  234 LSIISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL-----SSSKSKKSNSSKVL 308

                         330
                  ....*....|....*
gi 1462331590 322 NMTITTFITLSTMLL 336
Cdd:MTH00144  309 NSSIISLNLLGGLLF 323
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 7-337 2.34e-49

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 168.03  E-value: 2.34e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590   7 LLSITSLLLGTTITISSNHWMMAWTGLEINTLAILPLISKSHHPRAVEATTKYFLVQAAASALLLFSSmtnawhTGQWDI 86
Cdd:MTH00011    9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  87 TQLSHPTSCLLLTTAISIKLGLVPFHFWFPEVLQGTSLATGLLLATALKFPPITLFLLTSSSLNPTLLTLMAIASTALGG 166
Cdd:MTH00011   83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 167 WAGLNQTQTRKIMAFSSISHLGWMAIILVYNPKLTLITFYIYCLMTIPIFLTLNTIKTLKLATMSTTWTKTPSLTATLML 246
Cdd:MTH00011  163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 247 MLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYcATITLPPNSSNhmKQWQTNKSTNMTIT 326
Cdd:MTH00011  243 MLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSS--LKSAPYEPKTKILI 319

                         330
                  ....*....|.
gi 1462331590 327 TFITLSTMLLP 337
Cdd:MTH00011  320 SMCTLSLGLIP 330
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 12-298 7.28e-43

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 150.98  E-value: 7.28e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  12 SLLLGTTITISSNHWMMAWTGLEINTLAILPLISKSHHPRAVEATTKYFLVQAAASALLLFSSMTNAWHTgqwditqLSH 91
Cdd:MTH00197    6 IIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL-------YLS 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  92 PTSCLLLTTAISIKLGLVPFHFWFPEVLQGTSLATGLLLATALKFPPitLFLLTSSSLNPTLLTLMAIASTALGGWAGLN 171
Cdd:MTH00197   79 LLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAP--LLILAFNSSSFMGLLICSVLSSLIGGIGGMN 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 172 QTQTRKIMAFSSISHLGWMAIILVYNPKLTLITFYIYCLMTIPIFLTLNTIKTLKLATMSTTWTKTPSLTATLMLMLLSL 251
Cdd:MTH00197  157 QSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSL 236

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 1462331590 252 AGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAY 298
Cdd:MTH00197  237 GGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAY 283
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-298 1.24e-33

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 129.08  E-value: 1.24e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  14 LLGTTITISSNHWMMAWTGLEINTLAILPLIS-KSHHPRAVEATTKYFLVQAAASALLLF-SSMTNAWhTGQWDITQLSH 91
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIAA 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  92 PTS------------CLLLTTAISIKLGLVPFHFWFPEVLQGTSLATGLLLATALK----FPPITLFLLTSSSLNP---T 152
Cdd:COG1007   191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPGLAAdwqL 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 153 LLTLMAIASTALGGWAGLNQTQTRKIMAFSSISHLGWMAIILVYNPKLTL--ITFY--IYCLMTIPIFLTLNTIK----- 223
Cdd:COG1007   271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYllAYLFMNLGAFAVILLLSrkgge 350

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1462331590 224 TLKLATMSTTWTKTPSLTATLMLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAY 298
Cdd:COG1007   351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-296 3.56e-29

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 116.84  E-value: 3.56e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  14 LLGTTITISSNHWMMAWTGLEINTLAILPLIS-KSHHPRAVEATTKYFLVQAAASALLL--------------FSSMTNA 78
Cdd:PRK05777  113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLygmsllygatgslsFAGIAKA 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  79 WHTGQWDITQLShpTSCLLLTTAISIKLGLVPFHFWFPEVLQGTSLATGLLLATALK---FPPIT-LFLLTSSSLNPT-- 152
Cdd:PRK05777  193 LADGSGNSLLLL--FGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaaFAVLLrLLVVAFGGLSEDwq 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 153 -LLTLMAIASTALGGWAGLNQTQTRKIMAFSSISHLGWMAIILVYNPKLTL--ITFY--IYCLMTIPIFLTLNTIKTL-- 225
Cdd:PRK05777  271 qVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYllAYLFMTLGAFGVISLLRRKgg 350

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1462331590 226 ------KLATMSTTwtkTPSLTATLMLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRL 296
Cdd:PRK05777  351 eaesisDFAGLSKR---SPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-296 8.83e-28

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 111.28  E-value: 8.83e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  13 LLLGTTITISSNHWMMAWTGLEINTLAILPLI-SKSHHPRAVEATTKYFLVQAAASALLLFS-------------SMTNA 78
Cdd:MTH00196    2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  79 WHTGQWDITQLSHPTSCLLLTTAISIKLGLVPFHFWFPEVLQGTSLATGLLLATAlkfPPITLF-LLTSSSLNPTLLTLM 157
Cdd:MTH00196   82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIV---PKLGIFsILVSIGLNVNILLIG 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 158 AIASTALGGWAGLNQTQTRKIMAFSSISHLGWMAIILVYNP----KLTLITFYIYCLMTIPIF---LTLNTIKTLkLATM 230
Cdd:MTH00196  159 GLFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFsiiLALNVYKNL-IIEF 237

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1462331590 231 STTWTKTPSLTATLMLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRL 296
Cdd:MTH00196  238 SGLSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 1.26e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 106.63  E-value: 1.26e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  23 SNHWMMAWTGLEINTLAILPLI-SKSHHPRAVEATTKYFLVQAAASALLLFSSMTNAWHTGQWDITQLSHPTSC------ 95
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGglnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  96 -----LLLTTAISIKLGLVPFHFWFPEVLQGTSLATGLLLA-TALKFPPI-----TLFLLTSSSLNPTLLTLMAIASTAL 164
Cdd:pfam00361  81 llllfLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYglirrSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 165 GGWAGLNQTQTRKIMAFSSISHLGWMAIIL----VYNPKLTLITFYIYCLMTIPIFL-----TLNTIKTLKLATMSTTWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1462331590 236 KTPSLTATLMLMLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-297 1.06e-25

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 106.96  E-value: 1.06e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  14 LLGTTITISSNHWMMAWTGLEINTLAILPLIS-KSHHPRAVEATTKYFLVQAAASALLLFSSMTNAWHTGQWDITQLSHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  93 TSC------------LLLTTAISIKLGLVPFHFWFPEVLQGTSLATGLLLATALK----FPPITLFLLTSSSLNPT---L 153
Cdd:TIGR01770 192 LSNgmlnisllllgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaifAVFLRLFLYILFGFSEAwqiF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 154 LTLMAIASTALGGWAGLNQTQTRKIMAFSSISHLGWMAIILVYNPKLTL--ITFY--IYCLMTIPIFLTLNTIKTLK--- 226
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkaVLFYifIYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1462331590 227 ---LATMSTTWTKTPSLTATLMLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLA 297
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 13-337 7.72e-25

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 104.33  E-value: 7.72e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  13 LLLGTTITISSNHWMMAWTGLEINTLAILPLIS-KSHHPRAVEATTKYFLVQAAASALLLFSSMTNAWHTGQWDI----T 87
Cdd:MTH00199  106 VALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqginS 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  88 QLSHPTSCLLLTTAISIKLGLVPFHFWFPEVLQGTSLATGLLLATAlkfPPITLF-LLTSSSLNPTLLTLMAIASTALGG 166
Cdd:MTH00199  186 ILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATV---PKIGVFsILVQIGPVTNVVLICAVLSIIYGA 262

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 167 WAGLNQTQTRKIMAFSSISHLGW----MAIILVYNPKLTLITFYIYCLMTIPIF---LTLNTIKTLkLATMSTTWTKTPS 239
Cdd:MTH00199  263 IGALNQTKIKRLLAYSGIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSICSFsiiLSLKLTKGL-IVEVSGLSRKNPV 341

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 240 LTATLMLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYcaTITLPPNSSnhMKQWQT-- 317
Cdd:MTH00199  342 IALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRVVQ--IIYFQADYS--ILIWQKvl 417

                         330       340
                  ....*....|....*....|....*...
gi 1462331590 318 --------NKSTNMTITTFITLSTMLLP 337
Cdd:MTH00199  418 kkeerldlSKSILIGVTFFIILFLMISP 445
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 13-296 3.53e-19

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 87.90  E-value: 3.53e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  13 LLLGTTITISSNHWMMAWTGLEINTLAILPLISKSHHPRAVEATTKYFLVQAAASALLLFSSMTNAWHTGQWDITQLSH- 91
Cdd:COG0651   116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAr 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  92 ---------PTSCLLLTTAISIKLGLVPFHFWFPE-----------VLQGTSLATGL--LLATALKFPPITLFLLTSssl 149
Cdd:COG0651   196 laeldpgllLAAFALLLVGFGIKAALFPLHFWLPDaypaapspvsaLLSGLLTKVGVyaILRVLTLLFGADPALFLG--- 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 150 npTLLTLMAIASTALGGWAGLNQTQTRKIMAFSSISHLGWMAI-ILVYNPKLTLITFYIY---CLMTIPIFLT----LNT 221
Cdd:COG0651   273 --TLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLgLGLGTPLGLAGALFHLlnhALAKALLFLAagaiERA 350

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1462331590 222 IKTLKLATMSTTWTKTPSLTATLMLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRL 296
Cdd:COG0651   351 TGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 15-302 2.06e-17

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 83.37  E-value: 2.06e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  15 LGTTITISSNHWMMAWTGLEINTLAILPLISKSHHPRAV---------EATTKYFLVQAAASALLLFSSMTNAWHTGQ-- 83
Cdd:MTH00198  199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNeg 278

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  84 ------------WDITQLSHPTSCLLLTTAISIKLGLVPFHFWFPEVLQGTSLATGLLLATALKFppITLFLLTSSSLNP 151
Cdd:MTH00198  279 mlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITS 356

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 152 TLLTLMAIASTALGGWAGLNQTQTRKIMAFSSISHLGWMAIIL-------VYNPKLTLITFYIYCLMTIPIFLTLNTIKT 224
Cdd:MTH00198  357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVsagtyesLQASWTYAVTYLVSALASFTVICTLEEFGT 436

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 225 L------------------KLATMSTTWTKTPSLTATLMLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLS 286
Cdd:MTH00198  437 RtptsrqrdgsfgnynlvrRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIAFSSSLSIYYLVA 516

                         330       340
                  ....*....|....*....|...
gi 1462331590 287 LLGL-------FFYLRLAycATI 302
Cdd:MTH00198  517 LFAIictcisaFYYIRIV--ATI 537
ndhB CHL00049
NADH dehydrogenase subunit 2
 51-296 1.41e-14

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 74.27  E-value: 1.41e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  51 RAVEATTKYFLVQAAASALLL--FSSM--TNAWHTGQWDI------TQLSHPTSCLL----LTTAISIKLGLVPFHFWFP 116
Cdd:CHL00049  159 RSNEATMKYLLMGGASSSILVygFSWLygLSGGEIELQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTP 238

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 117 EVLQG-----------TSLATGLLLATALkfppITLFLLTSSSLNPTLLTLMAIASTALGGWAGLNQTQTRKIMAFSSIS 185
Cdd:CHL00049  239 DVYEGsptpvvaflsvTSKVAASALATRI----FDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIG 314

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 186 HLGWMAI-ILVYNPKLTLITFYIYclMTIPIFLTLNTIKTLKLATMST----------TWTKTPSLTATLMLMLLSLAGL 254
Cdd:CHL00049  315 QIGYVIIgIIVGDSNDGYASMITY--MLFYIFMNLGTFACIVLFGLRTgtdnirdyagLYTKDPFLALSLALCLLSLGGI 392

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1462331590 255 PPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRL 296
Cdd:CHL00049  393 PPLAGFFGKLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLKI 434
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-311 1.64e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 64.90  E-value: 1.64e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  33 LEINTLAILPLISKSHHPRAVEATTKYFLVQAAASALLLFS-SMTNAwHTGQWDITQLSH--PTSCLLLT------TAIS 103
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLAGalAENPTVVTafgfvlLALA 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 104 IKLGLVPFHFWFPEVLQGTSLA-TGLLLATALKFP--PITLFLLT----SSSLNPTLLTLM---AIASTALGGWAGLNQT 173
Cdd:PRK08375  214 LKAAVFPLHTWLPRAYPAAPPVvTALLSGLVTKVAvyALIRIYFTvfggDFRFALGLGWLLavlALLSMLVGSLAALGQD 293

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 174 QTRKIMAFSSISHLGWMAIILVYNPKLTLI--TFYI--YCLMTIPIFLTLNTI----KTLKLATMSTTWTKTPSLTATLM 245
Cdd:PRK08375  294 DVKRVLAYSTVSQMGYILLGLALLTPLALAagLLHLlhHALMKGALFLAAGAIevtyGTRRLSELSGLGRRMPLTAAAFA 373

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1462331590 246 LMLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYCATITLPPNSSNH 311
Cdd:PRK08375  374 VASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYRAFFGPPPPGSEA 439
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-263 5.13e-11

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 63.53  E-value: 5.13e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  50 PRAVEATTKYFLVQAAASALLLF-SSMTNAWHTGQwdiTQLS--------HPTSCLLLT-----TAISIKLGLVPFHFWF 115
Cdd:PRK02504  157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGS---TQLSaialalitSPSLGLALAlvfviAGIAFKISAVPFHQWT 233

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 116 PEVLQGT-----------SLATGLLLATALKfppITLFLLTSSSLNpTLLTLMAIASTALGGWAGLNQTQTRKIMAFSSI 184
Cdd:PRK02504  234 PDVYEGSptpvvaflsvgSKAAGFALAIRLL---VTAFPSFDEQWK-LLFTALAILSMVLGNVVALAQTSMKRMLAYSSI 309

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 185 SHLGWMAIILVYNPK--LTLITFY--IYCLMTIPIF--LTLNTIKT--LKLATMSTTWTKTPSLTATLMLMLLSLAGLPP 256
Cdd:PRK02504  310 GQAGFVMIGLVAGTEagYASMVFYllAYLFMNLGAFacVILFSLRTgtDQISDYAGLYQKDPLLTLGLSLCLLSLGGIPP 389


                  ....*..
gi 1462331590 257 LTGFLPK 263
Cdd:PRK02504  390 LAGFFGK 396
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-192 2.00e-09

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 58.55  E-value: 2.00e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  49 HPRAVEATTKYFLVQAAASALLLFSSMTNAWHTGQW--DITQLSH---PTS-----CLLLTTAISIKLGLVPFHFWFPEV 118
Cdd:COG1008   156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAaplPLTaqlllFLAFFIAFAVKVPMFPFHTWLPDA 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 119 LQ-----GTSLATGLLLATA----LKFPpITLFLLTSSSLNPTLLTLmAIASTALGGWAGLNQTQTRKIMAFSSISHLGW 189
Cdd:COG1008   236 HVeaptaGSVLLAGVLLKMGgyglLRFA-LPLFPEASAYFAPLLAAL-GVIGIIYGALVALAQTDLKRLIAYSSVSHMGF 313


                  ...
gi 1462331590 190 MAI 192
Cdd:COG1008   314 VLL 316
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-300 3.89e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 54.72  E-value: 3.89e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  33 LEINTLAILPLIS-KSHHPRAVEATTKYFLVQAAASALLLFS---------SMTNAWHTGQWDITQLSHPTSCL-LLTTA 101
Cdd:PRK08376  150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGiallygqygTLNMAYLAVKMSENPTVVAKIALaLFIAG 229

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 102 ISIKLGLVPFHFWFPEVLQG--TSLATGLLLATALKFPPI--TLFLLTSSSLNPT----LLTLMAIASTALGGWAGLNQT 173
Cdd:PRK08376  230 LAMKSGAVPVHMWLPDAYPAapSSISAMLLVIKQAGLYALarVLFSIYGPAINLAtvgwVIIILGCLTMFVGVAMAVVQK 309

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 174 QTRKIMAFSSISHLGWM------AIILVYNPKLTLI--------TFYI--YCLMTIPIFLT----LNTIKTLKLATMSTT 233
Cdd:PRK08376  310 DVKRLLAYHSVSQIGYMllglgvGLAALGDPAMASYgeialaggIYHIvnHALYKALLFLTagavIYETGTRNLNELGGL 389

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1462331590 234 WTKTPSLTATLMLMLLSLAGLPPLTGFLPKWLIIQelTKQEMTPTATIIALL-SLLGLFFYLRLAYCA 300
Cdd:PRK08376  390 ARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYE--SSALFNPILGVIAMIgSVLTLASFVKVFHTA 455
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 291-340 9.40e-08

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 48.02  E-value: 9.40e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1462331590 291 FFYLRLAYCATITLPPNSSNHMKQWQTNKSTNMT-ITTFITLSTMLLPLSP 340
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLlLPTLTTLSILLLPLTP 51
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 34-298 1.46e-07

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 53.08  E-value: 1.46e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  34 EINTLAILPLISKSHHpRAVEATTKYFLVQAAASALLLFSSMTNAWHTGQWDITQ----LSHPTS-------CLLLTTAI 102
Cdd:PRK08668  128 EIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFADisqgLINDTStgfalivFLFLLAFG 206

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 103 SIKLGLVPFHFWFPEVLQG-----TSLATGLLLATALKFPPITLFLLTSSSLNPTLLTLMAIA------------STALG 165
Cdd:PRK08668  207 VAKAGIFPLHVWAPDAYSEapqsfSAVLSGQLSKLGAYGFLLVLYVLPGTKLFSEFGTYRGVPlfnyilawlgniSIIVG 286

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 166 GWAGLNQTQTRKIMAFSSISHLGW--MAIILVYNPKLTLITFYI--YCLMTIPIFLTLNTI----KTLKLATMSTTWTKT 237
Cdd:PRK08668  287 TLMAILQEDIKKLIAYSSVANGGYilVGLGLGTSLGFAGGLFHVfnHALFKGLFFLIFAAViyrtGTTKISEMGGLIEKM 366

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1462331590 238 PSLTATLMLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAY 298
Cdd:PRK08668  367 PFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFGSIGSFLYVFRPLA 427
PRK12650 PRK12650
DUF4040 family protein;
29-304 7.68e-07

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 50.81  E-value: 7.68e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  29 AWtglEINTLAILPLISKSHhPRAVEATTKYFLVQAAASALLLFSSMTNAWHTGQWDITQLSHPTS-----------CLL 97
Cdd:PRK12650  138 AW---ELVSLASFFLIARSG-SGGEAGSIRTLILTFFGGLTLLAAVAIAATQTGTTSLSGILHSDVwaekpglttvvAVL 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  98 LTTAISIKLGLVPFHFWFPEVLQGTSLATGLLLATALKFPPITLFLLTSSSL--NPT---LLTLMAIASTALGGWAGLNQ 172
Cdd:PRK12650  214 IAVAAFTKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFhdVAVwnwLLIIVGMITALMGAVFAVQK 293

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 173 TQTRKIMAFSSISHLGWM-AIILVYNP-KLT--LITFYIYCLMTIPIFLTLNTIK----TLKLATMSTTWTKTPSLTATL 244
Cdd:PRK12650  294 TDLKKLTAYSTVSQLGWIvATIGVGTPfALTaaVVHTLAHALFKSSLFMLIGVVDhqagTRDIRRLGSLWRRMPFTFVSV 373

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 245 MLMLLSLAGLPPLTGFLPKWLIIQELTKQEMtPTATIIALLSLLGLFFYLRLAYCATITL 304
Cdd:PRK12650  374 TIAALSMAAVPPLFGFVSKEGMLTAFLEAPG-GNAGVVLLLVGAALGAVFTFAYSARLVL 432
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-288 3.46e-06

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 48.40  E-value: 3.46e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  50 PRAVEATTKYFLVQAAASALLLFSSMTNAWHTGQW----DITQLSHPTSC-----LLLTTAISIKLGLVPFHFWFPEV-L 119
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGTfdllELLNLPLPFGVqtwlfLAFFIAFAVKVPLFPLHTWLPDAhV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 120 QGTSLATGLLLATALKFPP-------ITLFLLTSSSLNPTLLTLmAIASTALGGWAGLNQTQTRKIMAFSSISHLGWMAI 192
Cdd:TIGR01972 232 EAPTAGSVILAGVLLKMGTygflrfnLPLFPDASLYFAPVLAAL-GVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 193 ILVYNPKLTLITFYIYC----LMTIPIFLTLNTI----KTLKLATMSTTWTKTPSLTATLMLMLLSLAGLPPLTGFLPKW 264
Cdd:TIGR01972 311 GIFSFNELGISGAVFQMishgLITAALFLLVGVLyeraHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEF 390

                         250       260
                  ....*....|....*....|....
gi 1462331590 265 LIIQELTKqeMTPTATIIALLSLL 288
Cdd:TIGR01972 391 LILLGSFK--VNPVVAFLAALGIV 412
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 96-284 4.36e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 48.38  E-value: 4.36e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  96 LLLTTAISiKLGLVPFHFWFPEVLQGTSLATGLLLATALKFPPITLF------LLTSSSLNPTLLTLmAIASTALGGWAG 169
Cdd:PRK12644  208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMVKAGIYLVarlapgFADVPVWRPTVLVL-GLATMLLGGWRA 285

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 170 LNQTQTRKIMAFSSISHLGWMAIILVYNPK------LTLITfyIYCLMTIPIFLTLNTIK----TLKLATMSTTWTKTPS 239
Cdd:PRK12644  286 LRQHDLKLILAYGTVSQLGFLTVLVGIGTRdaalagLAMLL--AHALFKAALFLVVGIIDhstgTRDIRKLSGLGRRQPV 363

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1462331590 240 LTATLMLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIAL 284
Cdd:PRK12644  364 LAVVAALAAASMAGLPPLLGFVAKEAALEAVLHDGALGPAGPVVL 408
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 109-289 6.92e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 44.52  E-value: 6.92e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 109 VPFHFWFPEVLQG-TSLATGLLLATALKfppITLFLLtsSSLNP---------TLLTLMAIASTALGGWAGLNQTQTRKI 178
Cdd:PRK12647  212 FPFHFWLPNAMEApTPVSAYLHSATMVK---AGIYLL--ARLNPvlggtplwqTILPLFGGLTMLTGALLAVRQTDLKLI 286

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 179 MAFSSISHLGWMAIILVYNPKLTLITFYIY----CLMTIPIFLTLNTIK----TLKLATMSTTWTKTPSLTATLMLMLLS 250
Cdd:PRK12647  287 LAYSTVSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVAGIIDhetgTRDITKLGGLRRAMPITAAAALLAALS 366

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1462331590 251 LAGLPPLTGFLPKWLIIQELTkqEMTPTATIIALLSLLG 289
Cdd:PRK12647  367 MAGLPPLFGFLAKELIYEALL--EAPLWSLILTVAAVLG 403
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 48-298 9.20e-05

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 43.99  E-value: 9.20e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  48 HHPRAVEATTKYFLVQAAASALLLFSSMTNAWHTGQWDITQLSHPTSCLL---LTTAISI--------KLGLVPFHFWFP 116
Cdd:COG1009   156 EKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELLAAAPTILsspLLTLILLllllgafgKSAQFPLHFWLP 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 117 EVLQG-----------TSLATGL-LLAtalKFPPItlFLLTssslnPTLLTLMAI--ASTAL-GGWAGLNQTQTRKIMAF 181
Cdd:COG1009   236 DAMEGptpvsallhaaTMVKAGVyLLA---RLSPL--FALS-----PVWLTVVAIigAITALfAALIALAQTDIKRVLAY 305

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 182 SSISHLGWMAIILVynpkLTLITFYIYCLMTIPIFLTLntiktLKLAT--------------MSTTWTKTPSLTATLMLM 247
Cdd:COG1009   306 STVSQLGYMFLALG----VGAYVAALFHLLTHAFFKAL-----LFLGAgsvihatgtrdirkMGGLRKKMPITAITFLIG 376

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1462331590 248 LLSLAGLPPLTGFLPKWLIIQE-LTKQEMTPTATIIALL-SLLGLFFYLRLAY 298
Cdd:COG1009   377 ALSLAGIPPFAGFFSKEAILEAaLEAGGLGPLLLAVALLgAFLTAFYSFRLFF 429
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-192 1.57e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 43.20  E-value: 1.57e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  13 LLLGTTITISSNHWMMAWTGLEINTLAILPLISKSHHPRAVEATTKYFLVQAAA------SALLLFSSMTNAWHTGQWDI 86
Cdd:PRK08676  111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  87 TQLSHPT----------SCLLLTTAISIKLGLVPFHFWFPEV-LQGTSLATGLLLATALKFPPITLF----LLTSSSLNP 151
Cdd:PRK08676  191 TELAAHAsllspsvlgaSFLFIFIGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILrlsaLLRQSGAAE 270

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1462331590 152 T---LLTLMAIASTALGGWAGLNQTQTRKIMAFSSISHLGWMAI 192
Cdd:PRK08676  271 QfsnVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLL 314
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
55-190 1.76e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 43.15  E-value: 1.76e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  55 ATTKYFLVQAAASALLLFSSMTNAWHTGQWDI---TQLSH----PTSCLLLT---TAISIKLGLVPFHFWFPEVLQGTSL 124
Cdd:PRK06473  158 AATKFLLYTAISGILILVSFLGLVWLSGASSFdyePLRSHtlplSTQLLLLApilVGFGIKIPLVPFHTWLPDAHVEAST 237

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1462331590 125 ATGLLLATAL---------KFpPITLFLLTSSSLNPTLLTLMAIaSTALGGWAGLNQTQTRKIMAFSSISHLGWM 190
Cdd:PRK06473  238 PVSVLLAGVLlklgtygllRF-GVGLFPEAWVYLAPWLATWAVV-SVLYGASCAIAQKDMKKMVAYSSIGHMGYI 310
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-192 3.78e-04

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 42.11  E-value: 3.78e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  50 PRAVEATTKYFLVQAAASALLLFSSMTNAWH----TGQWDITQLSHPTSCLLLTT--------AISIKLGLVPFHFWFPE 117
Cdd:PRK05846  157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADLLNLPLPPGVQYwlflaffiAFAVKMPMFPLHTWLPD 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 118 VLQ-----GTSLATGLLLATA----LKFPpITLFLLTSSSLNPTLLTLmAIASTALGGWAGLNQTQTRKIMAFSSISHLG 188
Cdd:PRK05846  237 AHVqaptaGSVLLAGILLKMGayglLRFS-LPLFPDASHEFAPIIITL-GVIAIIYGALVALAQTDIKKLIAYSSISHMG 314


                  ....
gi 1462331590 189 WMAI 192
Cdd:PRK05846  315 FVTL 318
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
92-298 4.29e-04

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 41.86  E-value: 4.29e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  92 PTSCLLLTTAISIKLGLVPFhFWFPEVLQGTSLATGLLLATALK-------FPPITLFLLTSSSLNPTLLTLMAIASTAL 164
Cdd:PRK12663  207 TTIALLFLLAFGMKAALFPF-MWLPAAYHTPNTEVAALFAALLTkvgiyalIRVFTLLFPQERELLHPLLATMAAITMVI 285

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 165 GGWAGLNQTQTRKIMAFSSISHLGWM-AIILVYNPK-LTLITFYIYCLMTIP--IFLTLNTIKTL----KLATMSTTWTK 236
Cdd:PRK12663  286 GALGALAYKDIRRIAGYQVISSIGFIlLGLALGTPAgINGAIFYLVHDMVVKtaLFLIAGSLVRLtgyrSLQYLGGLYRK 365

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1462331590 237 TPSLTATLMLMLLSLAGLPPLTGFLPKWLIIQ-ELTKQEMTPTATIIA--LLSLLGLFFYLRLAY 298
Cdd:PRK12663  366 EPLFGALFLILIFAIGGLPPFSGFWGKVLLVQgALDNGAYILLALMLItsLITMYSLFRIFFLAY 430
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 82-268 5.16e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 41.67  E-value: 5.16e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  82 GQWDITQLSHPTSCLLLTTAISI----KLGLVPFHFWFPEVLQGTSLATGLL----LATALKFPPITLF-LLTSSSLNPT 152
Cdd:MTH00207  165 GHWSITNMWQTDMNNYIALSIMIaamtKSAQMPFSSWLPAAMAAPTPVSALVhsstLVTAGVFLLIRFYpFLSSTYWFNP 244

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 153 LLTLMAIASTALGGWAGLNQTQTRKIMAFSSISHLG-WMAIILVYNPKLTLITFYIYCLMTIPIFLTLNTI-----KTLK 226
Cdd:MTH00207  245 ALLLTASLTMLMAGLSAMTECDMKKIIALSTLSQLGvMMASLGLGMPKLALFHLITHALFKALLFVCAGSLihshhHSQD 324

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1462331590 227 LATMSTTWTKTPSLTATLMLMLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:MTH00207  325 LRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILE 366
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 12-284 6.34e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 41.34  E-value: 6.34e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  12 SLLLGTTITISSNHWMMaWTGLEINTLAILPLISKSHHPRAVEATTKYFLVQAAASALLLFSSMT---NAWHTGQW-DIT 87
Cdd:PRK06589  125 TILIGVLIALSSDLFTM-FVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLFLPAVIliyTKTGNLDFvSGG 203

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  88 QLSHPTSCLLLTTAIS--IKLGLVPFHFWFPEVLQGTSLATGLLLATAL----KFPPITLFLLTSSSLNPT-------LL 154
Cdd:PRK06589  204 LFSKNQSIILLLMFIYgiAKTAIFPVHSWLPAAMVAHYPVSALLHAVIVvktgLFCIYKILLYIFGLSYLQrifaefnWL 283

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 155 TLMAIASTALGGWAGLNQTQTRKIMAFSSISHLGWM---AIILVyNPKLTLITFYIYC--LMTIPIFLTLNTIKTLK--- 226
Cdd:PRK06589  284 IFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLAllsAFILT-PKALGAAILHLVShsFAKICLFYSMGSIYSLKked 362

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1462331590 227 -LATMSTTWTKTPSLTATLMLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIAL 284
Cdd:PRK06589  363 qVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWLSIIVML 421
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
55-190 9.12e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 40.85  E-value: 9.12e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  55 ATTKYFLVQAAASALLLFSSMTNAWHTGQWD------ITQ-LSHPTSCLLLTTAI---SIKLGLVPFHFWFPEVLQGTSL 124
Cdd:PRK07363  158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSfdydaiSTQnLSLNTQLILLTGLLlgfGIKIPLVPLHTWLPDAYTEASP 237

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1462331590 125 ATGLLLATAL---------KFpPITLFLLTSSSLNPTLLTLMAIaSTALGGWAGLNQTQTRKIMAFSSISHLGWM 190
Cdd:PRK07363  238 AVAILLGGVLaklgtygllRF-GLQLFPQTWSLVAPGLAIIGTI-SVIYGALSAIAQKDIKRMVAYSSIGHMGYI 310
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 101-195 1.01e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 40.68  E-value: 1.01e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 101 AISIKLGLVPFHFWFPEV-----LQGTSLATGLLLATA------LKFPpitLFLLTSSSLNPTLLTlMAIASTALGGWAG 169
Cdd:MTH00226  239 AMAVKIPIFPFHIWLPKAhveapVAGSVLLAGILLKLGgyglvrLSWP---ILPLGAQNLAPAVIA-MGIVGIVYGSFAT 314

                          90       100
                  ....*....|....*....|....*.
gi 1462331590 170 LNQTQTRKIMAFSSISHLGWMAIILV 195
Cdd:MTH00226  315 CRQIDVKRLVAYSSVAHMGLVSITLV 340
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 92-268 1.02e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 41.10  E-value: 1.02e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  92 PTSCLLLTTAI--SIKLGLvpfHFWFPEVLQGTSLATGLL----LATALKFPPITLF-LLTSSSLNPTLLTLMAIASTAL 164
Cdd:MTH00032  226 IIGILLLIGCIgkSAQLGL---HTWLPDAMEGPTPVSALIhaatMVTAGVFLMIRSFpLFEKAPLTLLIITIFGALTAFF 302

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 165 GGWAGLNQTQTRKIMAFSSISHLGWMAIILVYNPKLTLITFYI--YCLMTIPIFLTLN------TIKTLKLATMSTTWTK 236
Cdd:MTH00032  303 AATVGLVQNDLKKVIAYSTCSQLGYMVLIIGIEGSHNVGLFHLvnHAFFKALLFLSAGsvihstTVDEQDMRKMGGLIHS 382

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1462331590 237 TPSLTATLMLMLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:MTH00032  383 IPFTYTMMLIGSFSIMGLPYLTGFYSKDLILE 414
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 96-267 1.74e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 40.10  E-value: 1.74e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  96 LLLTTAISIKLGLVPFHFWFPEV-----------LQGTSLATGLLLATALKFPPI-TLFLLTSSSLNPTLLTLMAIAsTA 163
Cdd:PRK12662  213 LFIMVGLFIKAALFPFHKWLIQAyseapsfisvfFSGTSTKVMIYLIIRIVYDVFkANFVFTTLPFNNVFMILAALA-IV 291

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 164 LGGWAGLNQTQTRKIMAFSSISHLGWMAIILVYNPKLTLITFYIY----CLMTIPIFLTLNTIK----TLKLATMSTTWT 235
Cdd:PRK12662  292 FGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSISyhfgTTKLEDCLNLWK 371

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1462331590 236 KTPSLTATLMLMLLSLAGLPPLTGFLPKWLII 267
Cdd:PRK12662  372 SMPKITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 56-296 1.88e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 39.93  E-value: 1.88e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  56 TTKYFLVQAAASALLLFS-----SMT---NAWHTGQwDITQLSHPTSCLLLTTAI------SIKLGLVPFHFWFPEVLQG 121
Cdd:PRK07691  160 SIKYVLINVVSSAFFVVAvailySVVgtlNMADISV-KIAELSAGQTGLITVVAIlflfvfATKAGLFPLYFWLPGSYYA 238

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 122 TSLATGLLLATALKFPPI-------TLFLLTSSSLNPTLLTLMAIASTALGGWAGLNQTQTRKIMAFSSISHLGWMAIIL 194
Cdd:PRK07691  239 PPIAIAALFGALLTKVGVyaiartfTLFFSHDTSFTHYLILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVILVGV 318

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 195 VYNPKLTLI--TFYIYCLMTIP--IFLTLNTI----KTLKLATMSTTWTKTPSLTATLMLMLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK07691  319 AMMTESGMIgaIYYLIHDMIVKaaLFLLIGIMikitGTTDLKKMGGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFI 398

                         250       260       270
                  ....*....|....*....|....*....|
gi 1462331590 267 IQELTKQEMTPTATIIALLSLLGLFFYLRL 296
Cdd:PRK07691  399 VEGTFEAGFYVSGIIVLLSSLLVLYSVIKI 428
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 20-192 2.51e-03

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 39.53  E-value: 2.51e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  20 TISSNHWMMAWTGLEINTLAILPLISKSHHPRAVEATTKYF---------------LVQAAASALLLFSSMTNAW----- 79
Cdd:PRK06458  124 ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIiicsvgvafalfgtiLVYANAATVMGDGEMAILWtellk 203

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  80 HTGQWDITQLSHPTSCLLLttAISIKLGLVPFHFWFP----EVLQGTS-LATGLLLATALkFPPITLFLLTSSSLNP--- 151
Cdd:PRK06458  204 HASLLDPTLMKLAFVFLLI--GFGTKVGLFPMHAWLPdahsEAPSPVSaLLSGVLLNVAL-YAVLRYYILIDAAIGSdfp 280

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1462331590 152 -TLLTLMAIASTALGGWAGLNQTQTRKIMAFSSISHLGWMAI 192
Cdd:PRK06458  281 gRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
13-190 3.41e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 39.30  E-value: 3.41e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  13 LLLGTTITISSNHW---MMAW--TGLEINTLailpLISKSHHPRAVEATTKYFLVQAAASALLLFSSMTNAWHTGQWDIT 87
Cdd:PRK08168  109 VLAAVHLLVLSDHLlvlIAAWaaISLALHRL----LCFYPDRPFARLAAHKKFIADRLAELLLLAAAALAYLEVGSLSLS 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  88 QL---------SHP--TSCLLLTTAISIKLGLVPFHFWFPEVLQGTSLATGLLLA--------TALKFPPitlfLLTSSS 148
Cdd:PRK08168  185 ALwahlaaqgaSPSlqAAALLLVLAVILKTAQLPVHGWLIQVMEAPTPVSALLHAgvvnlggfVLIRFAP----LLEQAP 260

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1462331590 149 LNPTLLTLMAIASTALGGWAGLNQTQTRKIMAFSSISHLGWM 190
Cdd:PRK08168  261 PARWLLVLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFM 302
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-271 3.71e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 39.16  E-value: 3.71e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  33 LEINTLAILPLISKSHHPRAVEATTKYFLVQAAASALLLFSSMTNAWHTGQWDITQLSH--PTSCLLLTTAISIKLGLVP 110
Cdd:PRK07234  123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFV 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 111 FHFWFPEVLQGTSLATGLLLATALK----FPPITLFLLTSSSLNPtlLTLMAIASTALGGWAGLNQTQTRKIMAFSSISH 186
Cdd:PRK07234  203 SGLWLPLTHSEAEPPVSALLSGVVVkagvFPLVRCALDVPGLDLI--VRIFGVGTALLGVLFALLEKDLKRMLAFSTISQ 280

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 187 LGWMAIILVYNPKLTLitfyIYCLMTIPIFLTLNTIKTLKLatmsTTWTKTP---SLTATLMLMLLSLAGLPPLTGFLPK 263
Cdd:PRK07234  281 LGFILAAPLVGGLYAL----AHGLVKSTLFLCAGALPSRNF----TELISQMlgiGKWIPLTMASFSIAGFPLLAGFVSK 352


                  ....*...
gi 1462331590 264 WLIIQELT 271
Cdd:PRK07234  353 VLTLKNLL 360
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-192 3.96e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 38.86  E-value: 3.96e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  55 ATTKYFLVQAAASALLLFSSMTNAWHTGQ--WDITQL---SHPTSCLLLT-----TAISIKLGLVPFHFWFPEVLQGTSL 124
Cdd:PRK12561  138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELgakSYPLALELLLyagflIAFGVKLPIFPLHTWLPDAHGEASA 217

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1462331590 125 ATGLLLA-TALKFPPITLFLLTSSSLN-------PTLLTLmAIASTALGGWAGLNQTQTRKIMAFSSISHLGWMAI 192
Cdd:PRK12561  218 PVSMILAgVLLKMGGYALIRFNVQMLPdahvyfaPALAIL-GVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLL 292
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
34-298 6.14e-03

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 38.47  E-value: 6.14e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590  34 EINTLAILPLISKSHHPRAVEATTKYFLVQAAASALLLFSSMTNAWHTGQWDITQ-----LSHPTSCLLLTTAISIKLGL 108
Cdd:PRK06277  130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDihnalLVNPTSPVIYGGLLLLIFGL 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 109 V------PFHFWFPEVLQGTSLATGLLLATALKFPPITLFL--------LTSSSLNPTLLTLMAIASTALGGWAGLNQTQ 174
Cdd:PRK06277  210 LygsglpPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMLvifklfggLSYFPSAQGVLIALSVLAMVFGVVMALLQTD 289

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1462331590 175 TRKIMAFSSISHLGWMAIILVYNPKLTlITFYIY-----CLMTIPIFLTLNTI----KTLKLATMSTTWTKTPSLTATLM 245
Cdd:PRK06277  290 YKRLLAYHAISQGGYVAAGLALGTPLG-IVAGIFhainhVIYKSALFLGAGIVsyrtKTSNLRKLGGLLPVMPVVAFMVL 368

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1462331590 246 LMLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAY 298
Cdd:PRK06277  369 CAKLAISGVPPFNGFQSKLMLAQAAMQANMPELAIIMIIVSIGTFVSMMKAFY 421
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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