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Conserved domains on  [gi|1460644644|emb|SXF43413|]
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Spermidine Putrescine ABC transporter permease PotB [Klebsiella variicola]

Protein Classification

spermidine/putrescine ABC transporter permease PotB( domain architecture ID 10793277)

spermidine/putrescine ABC transporter permease PotB is a transmembrane (TM) subunit of the periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter PotABCD that is responsible for the translocation across the membrane of putrescine and spermidine

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 1-285 2.95e-163

spermidine/putrescine ABC transporter membrane protein; Reviewed


:

Pssm-ID: 181910  Cd Length: 285  Bit Score: 454.53  E-value: 2.95e-163
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644   1 MKNSSKFQNVVIATIVGWLVLFVFLPNLMIIATSFLTRDDANFVKLVFTLDNYSRLLDPLYYDVLLHSLNMALLATLACL 80
Cdd:PRK09497    1 MKNTSKFQNVVIVTIVGWLVLFVFLPNLMIIGTSFLTRDDANFVKMVFTLDNYTRLLDPLYAEVLLHSLNMALIATLACL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644  81 ALGYPFAWFLARLPQKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGVIDTPIRIMFTPSAVIIGLVYI 160
Cdd:PRK09497   81 VLGYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGVIDTPIRIMFTESAVIIGLVYI 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644 161 LLPFMVMPLYSSIEKLDRPLLEAAKDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFYVSDLMGGAKNLLIGNVI 240
Cdd:PRK09497  161 LLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLPAMGMFYVSDLLGGAKNLLIGNVI 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 1460644644 241 KSQFLNIRDWPFGAATSITLTLVMGLMLLIYWRAARLLNKKVELE 285
Cdd:PRK09497  241 KSQFLNIRDWPFGAATSITLTIVMGLMLLVYYRASKLLNKKVELE 285
 
Name Accession Description Interval E-value
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 1-285 2.95e-163

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 454.53  E-value: 2.95e-163
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644   1 MKNSSKFQNVVIATIVGWLVLFVFLPNLMIIATSFLTRDDANFVKLVFTLDNYSRLLDPLYYDVLLHSLNMALLATLACL 80
Cdd:PRK09497    1 MKNTSKFQNVVIVTIVGWLVLFVFLPNLMIIGTSFLTRDDANFVKMVFTLDNYTRLLDPLYAEVLLHSLNMALIATLACL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644  81 ALGYPFAWFLARLPQKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGVIDTPIRIMFTPSAVIIGLVYI 160
Cdd:PRK09497   81 VLGYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGVIDTPIRIMFTESAVIIGLVYI 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644 161 LLPFMVMPLYSSIEKLDRPLLEAAKDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFYVSDLMGGAKNLLIGNVI 240
Cdd:PRK09497  161 LLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLPAMGMFYVSDLLGGAKNLLIGNVI 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 1460644644 241 KSQFLNIRDWPFGAATSITLTLVMGLMLLIYWRAARLLNKKVELE 285
Cdd:PRK09497  241 KSQFLNIRDWPFGAATSITLTIVMGLMLLVYYRASKLLNKKVELE 285
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 11-281 1.22e-97

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 288.20  E-value: 1.22e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644  11 VIATIVGWLVLFVFLPNLMIIATSFLTRDDANFVKLVFTLDNYSRLL-DPLYYDVLLHSLNMALLATLACLALGYPFAWF 89
Cdd:COG1176    14 LLLPALLWLLLFFVLPLLLLLVYSFTTRDPYGGVVPGFTLENYARLFtDPLYLKVLLRTLWIALLTTLICLLLGYPIAYF 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644  90 LARLPQKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGVIDTPIRIMFTPSAVIIGLVYILLPFMVMPL 169
Cdd:COG1176    94 LARAPPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRNGLLNSLLLALGLIDEPLRLLYTEFAVVIGLVYVYLPFMVLPL 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644 170 YSSIEKLDRPLLEAAKDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFYVSDLMGGAKNLLIGNVIKSQFLNIRD 249
Cdd:COG1176   174 YAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGGGKVLMIGNLIYQQFLSALN 253

                         250       260       270
                  ....*....|....*....|....*....|..
gi 1460644644 250 WPFGAATSITLTLVMGLMLLIYWRAARLLNKK 281
Cdd:COG1176   254 WPLAAALAVVLLLIVLLVLLLYLRLLRRRRLL 285
Mo_ABC_porter TIGR01581
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ...
 54-270 2.45e-14

NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.


Pssm-ID: 130643  Cd Length: 225  Bit Score: 70.50  E-value: 2.45e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644  54 SRLLDPLYYDVLLHSLNMALLATLACLALGYPFAWFLARLPQKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEF 133
Cdd:TIGR01581  12 SALTDPENIKALRLSLATSLASLLLAVIIGIPTAYVLARVRFPLKKLLDTLLDLPMVLPPLVAGLALLLLFGRNGLLGPY 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644 134 LLWLGvidtpIRIMFTPSAVIIGLVYILLPFMVMPLYSSIEKLDRPLLEAAKDLGASKLQTFIRIIIPLTMPGIIAGCLL 213
Cdd:TIGR01581  92 LEAAG-----IQVIFSTLGVVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGLLAGLVL 166

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1460644644 214 VMLPAMGLFYVSDLMGGAKNLLIGNVIKSQFLNIRDWPFGAAT--SITLTLVMGLMLLI 270
Cdd:TIGR01581 167 AWARALGEFGATLMFAGSIQGKTRTLPLAIYLNIQSDNIEAAVasALLLLVIAFLLLLV 225
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 65-264 1.87e-09

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 56.13  E-value: 1.87e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644  65 LLHSLNMALLATLACLALGYPFAWFLARLPQKVRPLLLFLLIVPFWTNSLIRIYGLkiflstkgylnefLLWLGVIDTPI 144
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLL-------------VLLFGVLLGWG 67

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644 145 RIMFTPSAVIIGLVYILLPFMVMPLYSSIEKLDRPLLEAAKDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFYV 224
Cdd:cd06261    68 ILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFAL 147

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1460644644 225 SDLMGG--AKNLLIGNVIKSQFLNIRDWPFGAATSITLTLVM 264
Cdd:cd06261   148 VSFLGGgeAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLS 189
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 148-282 6.53e-07

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 48.45  E-value: 6.53e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644 148 FTPSAVIIGLVYILLPFMVMPLYSSIEKLDRPLLEAAKDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFYVSDL 227
Cdd:pfam00528  50 HGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEF 129

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1460644644 228 MGGAKNLligNVIKSQFLNIRDWPFGAATSITLTLVMGLMLLIYWRAARLLNKKV 282
Cdd:pfam00528 130 LGSWPGL---GLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDPRV 181
 
Name Accession Description Interval E-value
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 1-285 2.95e-163

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 454.53  E-value: 2.95e-163
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644   1 MKNSSKFQNVVIATIVGWLVLFVFLPNLMIIATSFLTRDDANFVKLVFTLDNYSRLLDPLYYDVLLHSLNMALLATLACL 80
Cdd:PRK09497    1 MKNTSKFQNVVIVTIVGWLVLFVFLPNLMIIGTSFLTRDDANFVKMVFTLDNYTRLLDPLYAEVLLHSLNMALIATLACL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644  81 ALGYPFAWFLARLPQKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGVIDTPIRIMFTPSAVIIGLVYI 160
Cdd:PRK09497   81 VLGYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGVIDTPIRIMFTESAVIIGLVYI 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644 161 LLPFMVMPLYSSIEKLDRPLLEAAKDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFYVSDLMGGAKNLLIGNVI 240
Cdd:PRK09497  161 LLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLPAMGMFYVSDLLGGAKNLLIGNVI 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 1460644644 241 KSQFLNIRDWPFGAATSITLTLVMGLMLLIYWRAARLLNKKVELE 285
Cdd:PRK09497  241 KSQFLNIRDWPFGAATSITLTIVMGLMLLVYYRASKLLNKKVELE 285
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 11-281 1.22e-97

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 288.20  E-value: 1.22e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644  11 VIATIVGWLVLFVFLPNLMIIATSFLTRDDANFVKLVFTLDNYSRLL-DPLYYDVLLHSLNMALLATLACLALGYPFAWF 89
Cdd:COG1176    14 LLLPALLWLLLFFVLPLLLLLVYSFTTRDPYGGVVPGFTLENYARLFtDPLYLKVLLRTLWIALLTTLICLLLGYPIAYF 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644  90 LARLPQKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGVIDTPIRIMFTPSAVIIGLVYILLPFMVMPL 169
Cdd:COG1176    94 LARAPPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRNGLLNSLLLALGLIDEPLRLLYTEFAVVIGLVYVYLPFMVLPL 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644 170 YSSIEKLDRPLLEAAKDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFYVSDLMGGAKNLLIGNVIKSQFLNIRD 249
Cdd:COG1176   174 YAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGGGKVLMIGNLIYQQFLSALN 253

                         250       260       270
                  ....*....|....*....|....*....|..
gi 1460644644 250 WPFGAATSITLTLVMGLMLLIYWRAARLLNKK 281
Cdd:COG1176   254 WPLAAALAVVLLLIVLLVLLLYLRLLRRRRLL 285
PRK10683 PRK10683
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 11-272 2.23e-60

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182646  Cd Length: 317  Bit Score: 194.16  E-value: 2.23e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644  11 VIATIVGWLVLFVFLPNLMIIATSF------------LTRDDANFVKLVFTLDNYSRLL-DPLYYDVLLHSLNMALLATL 77
Cdd:PRK10683   32 VIALPYLWLILLFLLPFLIVFKISLaemaraippytdLMEWADGQLSITLNLGNFLQLTdDPLYFDAYLQSLQVAAISTL 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644  78 ACLALGYPFAWFLARLPQKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGVIDTPIRIMFTPSAVIIGL 157
Cdd:PRK10683  112 CCLLIGYPLAWAVAHSKPSTRNILLLLVILPSWTSFLIRVYAWMGILKNNGVLNNFLLWLGVIDQPLTILHTNLAVYIGI 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644 158 VYILLPFMVMPLYSSIEKLDRPLLEAAKDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFYVSDLMGGAKNLLIG 237
Cdd:PRK10683  192 VYAYLPFMVLPIYTALTRIDYSLVEAALDLGARPLKTFFSVIVPLTKGGIIAGSMLVFIPAVGEFVIPELLGGPDSIMIG 271

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 1460644644 238 NVIKSQFLNIRDWPFGAATSITLTLVmgLMLLIYW 272
Cdd:PRK10683  272 RVLWQEFFNNRDWPVASAVAIIMLLL--LIVPIMW 304
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
2-276 1.93e-25

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 105.24  E-value: 1.93e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644   2 KNSSKFQNVVIATIVGWLVLFVFLPNLMIIATSFLTRddanfvklvftLDNYSRLL-DPLYYDVLLHSLNMALLATLACL 80
Cdd:COG1178     3 TRPRRRPRLLLLLLALLLALLVLLPLLALLLRAFTDG-----------LANFWALLsDPYLWRALGNTLLLALLVTLLSL 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644  81 ALGYPFAWFLARLPQKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGVIDTPIriMFTPSAVIIGLVYI 160
Cdd:COG1178    72 LLGVPLAWLLARTDFPGRRLLRWLLLLPLALPPYVVALAWIALFGPNGLLNTLLRALFGLEPPD--IYGLGGIILVLVLF 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644 161 LLPFMVMPLYSSIEKLDRPLLEAAKDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFYVSDLMGGAKNLLIGnVI 240
Cdd:COG1178   150 NYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVLGGGYTTLTT-AI 228

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1460644644 241 KSQFLNIRDWPFGAATSITLTLVMGLMLLIYWRAAR 276
Cdd:COG1178   229 YQAWLGDFDLGAAAALALVLLLLVLLLLLLERRLRR 264
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 4-281 6.12e-22

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 92.10  E-value: 6.12e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644   4 SSKFQNVVIATIVGWLVLFVFLPNLMIIATSFLTRDDANFVKLVFTLDNYSRLL-DPLYYDVLLHSLNMALLATLACLAL 82
Cdd:COG1177     1 SSRLGRLLLRLFLALVLLFLYLPILVLVLYSFNDSWFLTFPPEGFTLRWYAELFsDPRLLDALLNSLLIALLSTLLATVL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644  83 GYPFAWFLARLPQKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTkgylnefllwlgvidtpIRIMFTPSAVIIGLVYILL 162
Cdd:COG1177    81 GTPAALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSA-----------------LGLSGGLWGLILAHVVFTL 143

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644 163 PFMVMPLYSSIEKLDRPLLEAAKDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFYVSDLMGGAKN----LLIGN 238
Cdd:COG1177   144 PFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGVttlpVYIYS 223

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 1460644644 239 VIKSQFlnirdWPFGAATSITLTLVMGLMLLIYWRAARLLNKK 281
Cdd:COG1177   224 MIRRGI-----SPEINALSTLLILLSLLLLLLAERLRRRGERR 261
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 83-222 4.01e-21

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 88.95  E-value: 4.01e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644  83 GYPFAWFLARLPQKVRPLLLFLLIVPFwtnslirI-------YGLKIFLSTKGYLNEFLLWLGVIdtpiRIMFTPSAVII 155
Cdd:COG4149    27 GIPLAWWLARTRFRGKGLLEALVTLPL-------VlpptvlgFYLLLLFGRNGPLGQLLEELFGI----SLVFTWTGAVL 95

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1460644644 156 GLVYILLPFMVMPLYSSIEKLDRPLLEAAKDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLF 222
Cdd:COG4149    96 ASVVVSLPLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILAGAVLAFARALGEF 162
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 13-222 2.57e-18

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 82.11  E-value: 2.57e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644  13 ATIVGWLVLFVFLPNLMIIATSFlTRDDANFVKLvftldnysrLLDPLYYDVLLHSLNMALLATLACLALGYPFAWFLAR 92
Cdd:COG0555    14 GLTLLYLSLIVLLPLAALVLKAA-GLGWAEFWAV---------LTSPRVLAALKLSLGTALIAALINLVFGLPLAWVLVR 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644  93 LPQKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGvidtpIRIMFTPSAVIIGLVYILLPFMVMPLYSS 172
Cdd:COG0555    84 YRFPGKRLVDALVDLPFALPTAVAGIALLLLFGPNGWLGQLLAPLG-----IKVAFTPLGIVLAQTFVSLPFVVRTVQPV 158

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1460644644 173 IEKLDRPLLEAAKDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLF 222
Cdd:COG0555   159 LEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFARALGEF 208
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
5-276 4.49e-17

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 80.98  E-value: 4.49e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644   5 SKFQNVVIATIVGWLVLFVFLPNLMIIATSFLTRDDANFvklvfTLDNYSR-LLDPLYYDVLLHSLNMALLATLACLALG 83
Cdd:COG1178   284 GRWRWLALALCLLLVLLGLLLPLLALLLWSLTKALDDNL-----TLDNYRFvLLDPSLLRALLNSLLLALLAALLAVLLA 358

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644  84 YPFAWFLARLPQKVRPLLLFLLIVPfwtnsliriYGLK-IFLSTkGYlneFLLWLGVIdtPIRIMFTPSAVIIGLVYILL 162
Cdd:COG1178   359 LLLAYLVRRRRGRLARLLDRLAMLP---------YAVPgIVLGL-GL---LLLFNRPL--PLLLYGTLAILVLAYVVRFL 423

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644 163 PFMVMPLYSSIEKLDRPLLEAAKDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFYVSDLMGGAKNLLIGNVIKs 242
Cdd:COG1178   424 PFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLLRPPGFETLAVLIY- 502

                         250       260       270
                  ....*....|....*....|....*....|....
gi 1460644644 243 QFLNIRDWPFGAATSITLTLVMGLMLLIYWRAAR 276
Cdd:COG1178   503 QLASSGRYGEAAALALLLVLVSLLPVLLLERLLG 536
Mo_ABC_porter TIGR01581
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ...
 54-270 2.45e-14

NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.


Pssm-ID: 130643  Cd Length: 225  Bit Score: 70.50  E-value: 2.45e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644  54 SRLLDPLYYDVLLHSLNMALLATLACLALGYPFAWFLARLPQKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEF 133
Cdd:TIGR01581  12 SALTDPENIKALRLSLATSLASLLLAVIIGIPTAYVLARVRFPLKKLLDTLLDLPMVLPPLVAGLALLLLFGRNGLLGPY 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644 134 LLWLGvidtpIRIMFTPSAVIIGLVYILLPFMVMPLYSSIEKLDRPLLEAAKDLGASKLQTFIRIIIPLTMPGIIAGCLL 213
Cdd:TIGR01581  92 LEAAG-----IQVIFSTLGVVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGLLAGLVL 166

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1460644644 214 VMLPAMGLFYVSDLMGGAKNLLIGNVIKSQFLNIRDWPFGAAT--SITLTLVMGLMLLI 270
Cdd:TIGR01581 167 AWARALGEFGATLMFAGSIQGKTRTLPLAIYLNIQSDNIEAAVasALLLLVIAFLLLLV 225
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
19-276 3.26e-14

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 71.32  E-value: 3.26e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644  19 LVLFVFLPNLMIIATSF----LTRDDANFVklvfTLDNYSRLL-DPLYYDVLLHSLNMALLATLACLALGYPFAWFLARL 93
Cdd:COG1175    31 LLVFVLYPLLYTLYLSFtdwnLLGPPPEFV----GLDNYARLFtDPRFWNALGNTLLFTVVSVPLQLVLGLLLALLLNRK 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644  94 PqKVRPLLLFLLIVPFWTNSLIRIYGLK-IFLSTKGYLNEFLLWLGVidTPIRIMFTPS----AVIIGLVYILLPFMVMP 168
Cdd:COG1175   107 L-RGRGFFRTLFFLPWVISPVVVALIWKwLFNPDYGLLNALLGALGL--EPINWLGDPSlalpAVIIVTVWKGTGFNMLI 183

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644 169 LYSSIEKLDRPLLEAAKDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFYVSDLM--GGAKN--LLIGNVIKSQF 244
Cdd:COG1175   184 FLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLtgGGPGNstTTLVLYIYQTA 263

                         250       260       270
                  ....*....|....*....|....*....|..
gi 1460644644 245 LNIRDWPFGAATSITLTLVMGLMLLIYWRAAR 276
Cdd:COG1175   264 FQQFDFGYASAIAVVLFLIILVLTLLQLRLLR 295
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 11-276 1.45e-12

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 67.40  E-value: 1.45e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644  11 VIATIVGWLVLFVFLPNLMIIATSFLTRDD-----ANFVKLvftldnysrLLDPLYYDVLLHSLNMALLATLACLALGYP 85
Cdd:TIGR03262   6 LLAGMILALLLFLLLPLLALLTKSVYDSDGdfiglANFAEY---------FATPGLLQSLGNSLTVSAIVTAIVVPLAFA 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644  86 FAWFLARLPQKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGVidtpirimFTPSAVIIGLVYILLPFM 165
Cdd:TIGR03262  77 FAYALTRSRIPGKGAFRLVALLPLLAPSLLPAISLIYLFGNQGLLKGLLGGFSI--------YGFWGIVIGEVFYTFPHA 148

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644 166 VMPLYSSIEKLDRPLLEAAKDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFYVSDLMGGAKNLLIGNVIKsQFL 245
Cdd:TIGR03262 149 LMILVTALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVPKVIGGDYNVLATDIYK-QVI 227

                         250       260       270
                  ....*....|....*....|....*....|.
gi 1460644644 246 NIRDWPFGAATSITLtLVMGLMLLIYWRAAR 276
Cdd:TIGR03262 228 GQQNFPMGAVVGVLL-LLPALLAFGIDRAIQ 257
permease_CysT TIGR02139
sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two ...
 83-220 7.87e-12

sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 131194  Cd Length: 265  Bit Score: 63.88  E-value: 7.87e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644  83 GYPFAWFLARLPQKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGvidtpIRIMFTPSAVIIGLVYILL 162
Cdd:TIGR02139  70 GTLLAWVLVRYRFPGKRIVDALVDLPFALPTAVAGIALATLYSPNGWIGSFLAPLG-----IKIAFTPLGIVIALVFVSL 144

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1460644644 163 PFMVMPLYSSIEKLDRPLLEAAKDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMG 220
Cdd:TIGR02139 145 PFVVRTVQPVLEEIEKELEEAAASLGASRWQTFWRVILPALLPALLTGFALAFARAVG 202
cysT CHL00187
sulfate transport protein; Provisional
 87-222 3.44e-11

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 61.57  E-value: 3.44e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644  87 AWFLARLPQKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGvidtpIRIMFTPSAVIIGLVYILLPFMV 166
Cdd:CHL00187   79 AWVLVRYNFPGKRLLDAAVDLPFALPTSVAGLTLATVYGDNGWIGHLLSHLG-----IQIVFTKLGVLLAMIFVSFPFVV 153

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1460644644 167 MPLYSSIEKLDRPLLEAAKDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLF 222
Cdd:CHL00187  154 RTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIGEY 209
modB PRK09421
molybdate ABC transporter permease subunit;
57-222 5.06e-11

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 61.09  E-value: 5.06e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644  57 LDPLYYDVLLHSLNMALLATLACLALGYPFAWFLARLPQKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLL- 135
Cdd:PRK09421    3 LSDPEWQAVLLSLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSLLHLPLVLPPVVTGYLLLISMGRRGFIGQWLYe 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644 136 WLGvidtpIRIMFTPSAVIIGLVYILLPFMVMPLYSSIEKLDRPLLEAAKDLGASKLQTFIRIIIPLTMPGIIAGCLLVM 215
Cdd:PRK09421   83 WFG-----ISFAFSWRGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAF 157


                  ....*..
gi 1460644644 216 LPAMGLF 222
Cdd:PRK09421  158 ARSLGEF 164
3a0106s02 TIGR00969
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and ...
 87-222 1.39e-09

sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. [Transport and binding proteins, Anions]


Pssm-ID: 273370  Cd Length: 271  Bit Score: 57.36  E-value: 1.39e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644  87 AWFLARLPQKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGvidtpIRIMFTPSAVIIGLVYILLPFMV 166
Cdd:TIGR00969  84 AWVLTRYQFPGRKLLDALIDLPFALSPVVAGLTLALLYGSNGWLGSWLASFG-----IQIIFTWPGMALAMIFVSLPFVV 158

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1460644644 167 MPLYSSIEKLDRPLLEAAKDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLF 222
Cdd:TIGR00969 159 REVQPVLEELGTEAEEAAATLGASGWQTFWRVTLPSIRWALLYGVVLTFARALGEF 214
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 65-264 1.87e-09

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 56.13  E-value: 1.87e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644  65 LLHSLNMALLATLACLALGYPFAWFLARLPQKVRPLLLFLLIVPFWTNSLIRIYGLkiflstkgylnefLLWLGVIDTPI 144
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLL-------------VLLFGVLLGWG 67

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644 145 RIMFTPSAVIIGLVYILLPFMVMPLYSSIEKLDRPLLEAAKDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFYV 224
Cdd:cd06261    68 ILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFAL 147

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1460644644 225 SDLMGG--AKNLLIGNVIKSQFLNIRDWPFGAATSITLTLVM 264
Cdd:cd06261   148 VSFLGGgeAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLS 189
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 19-216 2.47e-09

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 56.94  E-value: 2.47e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644  19 LVLFVFLPNLMIIATSFLTRDDAnfvklvfTLDNYSRLL-DPLYYDVLLHSLNMALLATLACLALGYPFAWFLARLP--- 94
Cdd:PRK15050   35 LAPLVVYPLVRVVLQSLTGEHGL-------GLATYRAVLgSPDFRGALLTTLQIAFASTAGCLVLGVLLALVLAFVPfpg 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644  95 --QKVRPLLLFLLIVPFW-TNSLIRIYGlkiflsTKGYLNEFLLWL-GVIDTPIRIMFTPSAVIIGLVYILLPFMVMPLY 170
Cdd:PRK15050  108 asLVGRFIDTFVAFPSFLiTLAFTFLYG------SAGSVNIALQRLfGLEAPPLDFLYSPGGVILAEITFYTPFVVRPLL 181

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1460644644 171 SSIEKLDRPLLEAAKDLGASKLQTFIRIIIPLTMPGIIAGCLLVML 216
Cdd:PRK15050  182 AAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLL 227
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 162-213 2.49e-09

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 56.53  E-value: 2.49e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1460644644 162 LPFMVMPLYSSIEKLDRPLLEAAKDLGASKLQTFIRIIIPLTMPGIIAGCLL 213
Cdd:PRK09500  139 LPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVAAGWLL 190
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
83-269 1.01e-08

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 55.15  E-value: 1.01e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644  83 GYPFAWFLARLPQKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEfllWLGVIDtpIRIMFTPSAVIIGLVYILL 162
Cdd:PRK10971   78 GLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGWYGE---WLAKFD--IKVTYTWLGIAVAMAFTSI 152

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644 163 PFMVMPLYSSIEKLDRPLLEAAKDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFyvsdlmgGAKNLLIGNVI-K 241
Cdd:PRK10971  153 PFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRSLGEF-------GAVIFIAGNIAwK 225

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1460644644 242 SQ------FLNIRDWPFGAATSI-TLTLVMGLMLL 269
Cdd:PRK10971  226 TEvtslmiFVRLQEFDYPAASAIaSVILAASLLLL 260
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 1-218 1.25e-08

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 54.72  E-value: 1.25e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644   1 MKNSSKFQNVVIATIVGWLVLFVF-----LPNLMIIATSFLTRDDAN-----FVKLVFTLDNYSRLL-DPLYYDVLLHSL 69
Cdd:COG0395     1 MSATARRRRRRLGRILLYLLLILLallflFPLYWMVVTSFKPPAEIFsgppsLLPSEFTLENYRAAFtDGPFGRYLLNSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644  70 NMALLATLACLALGYPFAWFLARLPQKVRPLLLFLLIVPFWTNSLIRIYGLKIFLStkgylnefllWLGVIDTPIrimft 149
Cdd:COG0395    81 IVAVVSTVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFR----------QLGLLNTYW----- 145

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1460644644 150 psAVIIGLVYILLPFMVMPLYSSIEKLDRPLLEAAKDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPA 218
Cdd:COG0395   146 --GLILPYLAFGLPFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGA 212
COG4132 COG4132
ABC-type uncharacterized transport system, permease component [General function prediction ...
 18-271 1.32e-08

ABC-type uncharacterized transport system, permease component [General function prediction only];


Pssm-ID: 443307 [Multi-domain]  Cd Length: 286  Bit Score: 54.81  E-value: 1.32e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644  18 WLVLFVFLPNLMIIATSFLTRDDAnfvklvFTLDNYSRLLDPLYYDVLLHSLNMALLATLACLALGYPFAWFLARL-PQK 96
Cdd:COG4132    24 FVLLFLLLPTVWVVIGAFQDDDGG------FTLANYAELTSPFYLQAFWNSIWLSLASALIGAVIGLLLAYALRRGgPGW 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644  97 VRPLLL---------------FLLIVPFWTNSLIriyglKIFLSTKGY--LNEFLLwlgvidtpirimFTPSAVIIGLVY 159
Cdd:COG4132    98 LRRAVLafsgvasnfagvplaFAFIATLGRNGLV-----TLLLKQLGIdlYDGFNL------------YSFWGLILVYLY 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644 160 ILLPFMVMPLYSSIEKLDRPLLEAAKDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLF-YVSDLMGGAKNLL--- 235
Cdd:COG4132   161 FQIPLMVLLLYPALDGLRREWREAAALLGASRWQYWRRVALPVLAPSLLGTFLLLFANAFGAYaTAYALTGGNYNLVpir 240

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1460644644 236 IGNVIKSQFLNirDWPFGAATSITLTLVMGLMLLIY 271
Cdd:COG4132   241 IGALISGDVLL--DPNLGAALALGMIVIMALVMALY 274
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 148-282 6.53e-07

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 48.45  E-value: 6.53e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644 148 FTPSAVIIGLVYILLPFMVMPLYSSIEKLDRPLLEAAKDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFYVSDL 227
Cdd:pfam00528  50 HGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEF 129

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1460644644 228 MGGAKNLligNVIKSQFLNIRDWPFGAATSITLTLVMGLMLLIYWRAARLLNKKV 282
Cdd:pfam00528 130 LGSWPGL---GLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDPRV 181
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 133-210 4.11e-05

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 43.98  E-value: 4.11e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1460644644 133 FLLWLGVIDTPIrimftpsavIIGLVYILLPFMVMPLYSSIEKLDRPLLEAAKDLGASKLQTFIRIIIPLTMPGIIAG 210
Cdd:COG0600   117 LILWFGIGEASK---------IFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTG 185
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 1-208 8.90e-05

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 43.22  E-value: 8.90e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644   1 MKNSSKFQNVVIATIVGW-LVLFVFLPNLMIIATSFLTRDDANFVKLV---FTLDNYSRLLDPLYY-DVLLHSLNMALLA 75
Cdd:COG3833     6 SRKRRRRLKLGLRHLVLIiLAIIALFPILWVVSASFNPGGSLYSSSLIpenFTLENYKKLFTETPFlRWFLNSLIVAVVT 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644  76 TLACLALGYPFAWFLARLPQKVR-PLLLFLLIV---PFwTNSLIRIYGLkiflstkgylnefLLWLGVIDTPIrimftps 151
Cdd:COG3833    86 AIISVFLAALAAYAFSRFRFKGRkAGLLALLLLqmfPA-FLALVALYLL-------------LSALGLLNTLL------- 144

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1460644644 152 AVIigLVYI--LLPFMVMPLYSSIEKLDRPLLEAAKDLGASKLQTFIRIIIPLTMPGII 208
Cdd:COG3833   145 GLI--LVYLggAIPFNTWLMKGYFDTIPKELDEAAKIDGASHFQIFFRIILPLAKPILA 201
phosphate_pstC TIGR02138
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ...
 131-266 9.64e-05

phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273992 [Multi-domain]  Cd Length: 295  Bit Score: 43.02  E-value: 9.64e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644 131 NEFLLWLGVIDTPIRIMFTPS-AVIIGLVYILLPFMVMPLYSSIEKLDRPLLEAAKDLGASKLQTFIRIIIPLTMPGIIA 209
Cdd:TIGR02138 131 PHFQPFLGSNLGLIPLFGGPIlTAGIVLAIMILPTIASISRDALRAVPRSYKEASYALGATKWETIRRVILPAARSGIVG 210

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1460644644 210 GCLLVMLPAMGlfyvsDLMggAKNLLIGNVIKSQFLNIrdwpFGAATSITLTLVMGL 266
Cdd:TIGR02138 211 AVVLGLGRALG-----ETM--AVTMVIGNVFPISPLSL----FDPGTTITSLIANQF 256
PstC COG0573
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 160-220 1.22e-04

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440338 [Multi-domain]  Cd Length: 303  Bit Score: 42.77  E-value: 1.22e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1460644644 160 ILLPFMVMPLYSSI-----EKLDRPLLEAAKDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMG 220
Cdd:COG0573   161 IVLAIMILPTITSLsrdalRAVPRSLREAALALGATRWETIRKVVLPAARSGIIAAVILGLGRALG 226
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 148-210 5.91e-04

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 40.04  E-value: 5.91e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1460644644 148 FTPSAVIIGLV-YILLPfMVMPLYSSIEKLDRPLLEAAKDLGASKLQTFIRIIIPLTMPGIIAG 210
Cdd:COG1174    80 IGPAPAIIALVlYALLP-ILRNTYTGLRSVDPAVVEAARGMGMTPWQRLWRVELPLALPVILAG 142
PRK10592 PRK10592
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 171-273 6.23e-04

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182574  Cd Length: 281  Bit Score: 40.61  E-value: 6.23e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644 171 SSIEKLDRPLLEAAKDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFYVSDLMGGAKNLLIGNVIKSQFLNIRDW 250
Cdd:PRK10592  161 SRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAIISGWLLAFTLSLDDLVIASFVSGPGATTLPMLVFSSVRMGVNP 240

                          90       100
                  ....*....|....*....|...
gi 1460644644 251 PFGAATSITLtLVMGLMLLIYWR 273
Cdd:PRK10592  241 EINALATLIL-GVVGIVGFIAWY 262
PstA COG0581
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 180-281 1.51e-03

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440346 [Multi-domain]  Cd Length: 259  Bit Score: 39.25  E-value: 1.51e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644 180 LLEAAKDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMG------------LFYVSDLMGGAKNL--LIGNVIKSQFL 245
Cdd:COG0581   144 LREASYALGATKWQTIRKVVLPAALPGILTGVILAIARAAGetapllftagvsPFLPLSLFDPFATLpvHIYNLASSPYP 223

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1460644644 246 NIRdwPFGAATSITLTLVMGLMLLIYWRAARLLNKK 281
Cdd:COG0581   224 AAQ--ELAWAAALVLLLLVLLLNLLARLLRRRFRKK 257
3a0107s02c TIGR00974
phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of ...
 152-220 1.60e-03

phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of permease proteins in the ABC (high affinity) phosphate transporter. In a number of species, this permease is fused with the PtsC protein (TIGR02138). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273373  Cd Length: 271  Bit Score: 39.14  E-value: 1.60e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1460644644 152 AVIIGLVYILLPFMVMPLYSSIEKLDRPLLEAAKDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMG 220
Cdd:TIGR00974 130 AGALALALLILPVIIRTTEEALKAVPKDLREASLALGATKWQTIFKVVLPAALPGILTGIILSIARAAG 198
cysW PRK11602
sulfate/thiosulfate ABC transporter permease CysW;
83-231 4.69e-03

sulfate/thiosulfate ABC transporter permease CysW;


Pssm-ID: 183225  Cd Length: 283  Bit Score: 37.81  E-value: 4.69e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1460644644  83 GYPFAWFLARLPQKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEfllWLGVIDtpIRIMFTPSAVIIGLVYILL 162
Cdd:PRK11602   84 GILLAWLVTRFNFPGRQLLLTLLDIPFAVSPVVAGLVYLLFYGSNGPLGG---WLDEHN--LQLMFSWPGMVLVTIFVTC 158

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1460644644 163 PFMVMPLYSSIEKLDRPLLEAAKDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFYVSDLMGGA 231
Cdd:PRK11602  159 PFVVRELVPVMLSQGSQEDEAAILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGEFGAVSVVSGS 227
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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