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Conserved domains on  [gi|145558883|sp|Q0VF58|]
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RecName: Full=Collagen alpha-1(XIX) chain; AltName: Full=Collagen alpha-1(Y) chain; Flags: Precursor

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TSPN smart00210
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of ...
 50-229 7.03e-48

Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of thrombospondin


:

Pssm-ID: 214560  Cd Length: 184  Bit Score: 168.69  E-value: 7.03e-48
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883     50 ELSGFDLGE-SFALRHAFC-EGDKTCFKLGS-VLLIRDTVKIFPKGLPEEYAIAVMFRVrrsTKKERWFLWKILNQQNMA 126
Cdd:smart00210    4 LLQVFDLPSlSFAIRQVVGpEPGSPAYRLGDpALVPQPTRDLFPSGLPEDFSLLTTFRQ---TPKSRGVLFAIYDAQNVR 80

                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883    127 QISVVIDGTKKVVEFMFRGAEGDLLNYVFKNRelrPLFDRQWHKLGIGVQSRVLSLYMDCNLIASRHTEEK--NSVDFQG 204
Cdd:smart00210   81 QFGLEVDGRANTLLLRYQGVDGKQHTVSFRNL---PLADGQWHKLALSVSGSSATLYVDCNEIDSRPLDRPgqPPIDTDG 157

                           170       180
                    ....*....|....*....|....*
gi 145558883    205 RTIIAARASDGKPVDIELHQLRIYC 229
Cdd:smart00210  158 IEVRGAQAADRKPFQGDLQQLKIVC 182
gly_rich_SclB super family cl45768
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 440-660 1.65e-33

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


The actual alignment was detected with superfamily member NF038329:

Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 135.03  E-value: 1.65e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  440 NKGTGEHGASGPKGEKGDTGLPGFPGSVGPKGHKGEPGEPLTKGEKGDRGEPGLLGPQGIKGEPGDPGPPGLLGSPGLKG 519
Cdd:NF038329  107 DEGLQQLKGDGEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKG 186

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  520 QQGPAGSMGPRGPPGDVGLPGEHGIPGKQGVKGEKGDPG----------GRLGPPGLPGLKGDAGPPGISLP-GKPGLDG 588
Cdd:NF038329  187 PAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGpagpagdgqqGPDGDPGPTGEDGPQGPDGPAGKdGPRGDRG 266

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 145558883  589 NPGSPGPRGPKGERGLPGLHGSPGDTGPPGV-GIPGRTGSQGPAGEPGIQGPRGLPGLPGTPGMPGNDGAPGK 660
Cdd:NF038329  267 EAGPDGPDGKDGERGPVGPAGKDGQNGKDGLpGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGK 339
gly_rich_SclB super family cl45768
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 699-968 1.64e-18

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


The actual alignment was detected with superfamily member NF038329:

Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 89.58  E-value: 1.64e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  699 GLKSIKGDdGSTGEPGKYDPAARKGDVGPRGPPGFPGREGPKGSKGERGYPGIHGEKGDEGLQGIPGLSGAPGPTGPpgl 778
Cdd:NF038329  109 GLQQLKGD-GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGA--- 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  779 tgrTGHPGPTGAKGDKGSEGPPGKPGppgppgvplnegngmsslykiQGGVNVPGYPGPPGPPGPKGDPGPVGEPGAMGL 858
Cdd:NF038329  185 ---KGPAGEKGPQGPRGETGPAGEQG---------------------PAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGD 240

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  859 PGLEGFPGVKGDRGPAGPPGIAGisgkpgapgppgVPGEQGERGPIGDTGFPGPEGPSGKPGINGKDGLPGAQGIMGKPG 938
Cdd:NF038329  241 PGPTGEDGPQGPDGPAGKDGPRG------------DRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNG 308

                         250       260       270
                  ....*....|....*....|....*....|
gi 145558883  939 DRGPKGERGDQGIPGDRGPQGERGKPGLTG 968
Cdd:NF038329  309 KDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
gly_rich_SclB super family cl45768
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 864-1092 4.76e-18

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


The actual alignment was detected with superfamily member NF038329:

Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 88.42  E-value: 4.76e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  864 FPGVKGDRGPAGPPGiagisgkpgapgppgvpgEQGERGPIGDTGFPGPEGPSGKPGINGKDGLPGAQGIMGKPGDRGPK 943
Cdd:NF038329  115 GDGEKGEPGPAGPAG------------------PAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPA 176

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  944 GERGDQGIPGDRGPQGERGKPGLTGMKGAIGPVGPAGSKGSTGPPGHQGPPGNPGIPGTPADAvsfeeikhyinqevlri 1023
Cdd:NF038329  177 GKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDG----------------- 239

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 145558883 1024 feermavflsqlkLPAAMLSAQAHGRPGPPGKDGLPGPPGDPGPQGYRGQKGERGEPGI----GLPGSPGLPG 1092
Cdd:NF038329  240 -------------DPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPagkdGQNGKDGLPG 299
 
Name Accession Description Interval E-value
TSPN smart00210
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of ...
 50-229 7.03e-48

Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of thrombospondin


Pssm-ID: 214560  Cd Length: 184  Bit Score: 168.69  E-value: 7.03e-48
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883     50 ELSGFDLGE-SFALRHAFC-EGDKTCFKLGS-VLLIRDTVKIFPKGLPEEYAIAVMFRVrrsTKKERWFLWKILNQQNMA 126
Cdd:smart00210    4 LLQVFDLPSlSFAIRQVVGpEPGSPAYRLGDpALVPQPTRDLFPSGLPEDFSLLTTFRQ---TPKSRGVLFAIYDAQNVR 80

                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883    127 QISVVIDGTKKVVEFMFRGAEGDLLNYVFKNRelrPLFDRQWHKLGIGVQSRVLSLYMDCNLIASRHTEEK--NSVDFQG 204
Cdd:smart00210   81 QFGLEVDGRANTLLLRYQGVDGKQHTVSFRNL---PLADGQWHKLALSVSGSSATLYVDCNEIDSRPLDRPgqPPIDTDG 157

                           170       180
                    ....*....|....*....|....*
gi 145558883    205 RTIIAARASDGKPVDIELHQLRIYC 229
Cdd:smart00210  158 IEVRGAQAADRKPFQGDLQQLKIVC 182
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 440-660 1.65e-33

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 135.03  E-value: 1.65e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  440 NKGTGEHGASGPKGEKGDTGLPGFPGSVGPKGHKGEPGEPLTKGEKGDRGEPGLLGPQGIKGEPGDPGPPGLLGSPGLKG 519
Cdd:NF038329  107 DEGLQQLKGDGEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKG 186

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  520 QQGPAGSMGPRGPPGDVGLPGEHGIPGKQGVKGEKGDPG----------GRLGPPGLPGLKGDAGPPGISLP-GKPGLDG 588
Cdd:NF038329  187 PAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGpagpagdgqqGPDGDPGPTGEDGPQGPDGPAGKdGPRGDRG 266

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 145558883  589 NPGSPGPRGPKGERGLPGLHGSPGDTGPPGV-GIPGRTGSQGPAGEPGIQGPRGLPGLPGTPGMPGNDGAPGK 660
Cdd:NF038329  267 EAGPDGPDGKDGERGPVGPAGKDGQNGKDGLpGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGK 339
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 327-653 1.86e-27

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 116.93  E-value: 1.86e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  327 QGLEGIKGEiGEKGEPGAKGDSGLDGLNGQDGLKGDsgpqgppgpkgdKGDMGPPGPPALTGSIGIQGPQGPPGKEGQRG 406
Cdd:NF038329  108 EGLQQLKGD-GEKGEPGPAGPAGPAGEQGPRGDRGE------------TGPAGPAGPPGPQGERGEKGPAGPQGEAGPQG 174

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  407 RRGKtgppgnpgppgpPgppglqglqqpfggyfnkgtGEHGASGPKGEKGDTGLPGFPGSVGPKGHKGEPGEpltKGEKG 486
Cdd:NF038329  175 PAGK------------D--------------------GEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGP---DGEAG 219

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  487 DRGEPGLLGPQGikgepgdpgppgllgspglKGQQGPAGSMGPRGPPGDVGLPGEhgiPGKQGVKGEKGDPggrlGPPGL 566
Cdd:NF038329  220 PAGEDGPAGPAG-------------------DGQQGPDGDPGPTGEDGPQGPDGP---AGKDGPRGDRGEA----GPDGP 273

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  567 PGLKGDAGPPGisLPGKPGLDGNPGSPGPRGPKGERGLPGLHGSPGDTGPPGV-GIPGRTGSQGPAGEPG------IQGP 639
Cdd:NF038329  274 DGKDGERGPVG--PAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKdGLPGKDGKDGQPGKPApktpevPQKP 351

                         330
                  ....*....|....
gi 145558883  640 RGLPGLPGTPGMPG 653
Cdd:NF038329  352 DTAPHTPKTPQIPG 365
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 290-598 3.58e-25

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 109.99  E-value: 3.58e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  290 EAGLPGTLRSIGHKGDKGEPGEHGLDGTPGLPGQKGEQGLEGIKGEIGEKGEPGAKGDSGLDGLNGQDGLKGDSGPQGPp 369
Cdd:NF038329  118 EKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGP- 196

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  370 gpkgdKGDMGPPGPpaltgsigiQGPQGPPGKEGQRGRRGKtgppgnpgppgppgppglqglqqpfggyfnkgtgehgaS 449
Cdd:NF038329  197 -----RGETGPAGE---------QGPAGPAGPDGEAGPAGE--------------------------------------D 224

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  450 GPKGEKGDtglpgfpgsvGPKGHKGEPGEPLTKGEKGDRGEPGLLGPQGIKGEpgdpgppgllgsPGLKGQQGPAGSMGP 529
Cdd:NF038329  225 GPAGPAGD----------GQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGE------------AGPDGPDGKDGERGP 282

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  530 RGPPGDVGLPGEHGIPGKQGVKGEKGDpggrlgpPGLPGLKGDAGPPGI-SLPGKPGLDGNPGSPGPRGP 598
Cdd:NF038329  283 VGPAGKDGQNGKDGLPGKDGKDGQNGK-------DGLPGKDGKDGQPGKdGLPGKDGKDGQPGKPAPKTP 345
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 699-968 1.64e-18

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 89.58  E-value: 1.64e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  699 GLKSIKGDdGSTGEPGKYDPAARKGDVGPRGPPGFPGREGPKGSKGERGYPGIHGEKGDEGLQGIPGLSGAPGPTGPpgl 778
Cdd:NF038329  109 GLQQLKGD-GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGA--- 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  779 tgrTGHPGPTGAKGDKGSEGPPGKPGppgppgvplnegngmsslykiQGGVNVPGYPGPPGPPGPKGDPGPVGEPGAMGL 858
Cdd:NF038329  185 ---KGPAGEKGPQGPRGETGPAGEQG---------------------PAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGD 240

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  859 PGLEGFPGVKGDRGPAGPPGIAGisgkpgapgppgVPGEQGERGPIGDTGFPGPEGPSGKPGINGKDGLPGAQGIMGKPG 938
Cdd:NF038329  241 PGPTGEDGPQGPDGPAGKDGPRG------------DRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNG 308

                         250       260       270
                  ....*....|....*....|....*....|
gi 145558883  939 DRGPKGERGDQGIPGDRGPQGERGKPGLTG 968
Cdd:NF038329  309 KDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 864-1092 4.76e-18

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 88.42  E-value: 4.76e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  864 FPGVKGDRGPAGPPGiagisgkpgapgppgvpgEQGERGPIGDTGFPGPEGPSGKPGINGKDGLPGAQGIMGKPGDRGPK 943
Cdd:NF038329  115 GDGEKGEPGPAGPAG------------------PAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPA 176

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  944 GERGDQGIPGDRGPQGERGKPGLTGMKGAIGPVGPAGSKGSTGPPGHQGPPGNPGIPGTPADAvsfeeikhyinqevlri 1023
Cdd:NF038329  177 GKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDG----------------- 239

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 145558883 1024 feermavflsqlkLPAAMLSAQAHGRPGPPGKDGLPGPPGDPGPQGYRGQKGERGEPGI----GLPGSPGLPG 1092
Cdd:NF038329  240 -------------DPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPagkdGQNGKDGLPG 299
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 516-795 9.08e-17

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 84.19  E-value: 9.08e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  516 GLKGQQGPAGSMGPRGPPGDVGLPGEHGIPGKQGVKGEKGDPGgrlgPPGLPGLKGDAGPPGisLPGKPGLDGNPGSPGP 595
Cdd:NF038329  117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERG----EKGPAGPQGEAGPQG--PAGKDGEAGAKGPAGE 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  596 RGPKGERGLPGLHGSPGDTGPPGvgipgrtgsqgPAGEPGIQGPRGLPGLPGtpgmpgndgapgkdgkpglpgppgdpia 675
Cdd:NF038329  191 KGPQGPRGETGPAGEQGPAGPAG-----------PDGEAGPAGEDGPAGPAG---------------------------- 231

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  676 lpllgdigallknfcgncqanvpglksiKGDDGSTGEPGKYDPAARKGDvgprgpPGFPGREGPKGSKGERGYPGIHGEK 755
Cdd:NF038329  232 ----------------------------DGQQGPDGDPGPTGEDGPQGP------DGPAGKDGPRGDRGEAGPDGPDGKD 277

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 145558883  756 GDEGLQGIPGLSGAPGPTGPPGLTGRTGHPGPTGAKGDKG 795
Cdd:NF038329  278 GERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDG 317
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 741-983 2.30e-16

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 83.03  E-value: 2.30e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  741 GSKGERGYPGIHGEKGDEGLQGIPGLSGAPGPTGPPGLTGRTGHPGPTGAKGDKGSEGPPGKPGppgppgvplnegngms 820
Cdd:NF038329  117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDG---------------- 180

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  821 slykiqggvnvpgypgppgppgpkgdpgpvgEPGAMGLPGLEGFPGVKGDRGPAGPPGIAGISGKPGAPGPPGVPGEQGE 900
Cdd:NF038329  181 -------------------------------EAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGP 229

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  901 RGPiGDTGFPGPEGPSGKPGINGKDGLPGAQGimgKPGDRGPKGERGDQGIPGDRGPQGERGKPGLTGMKGAIGPVGPAG 980
Cdd:NF038329  230 AGD-GQQGPDGDPGPTGEDGPQGPDGPAGKDG---PRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDG 305


                  ...
gi 145558883  981 SKG 983
Cdd:NF038329  306 QNG 308
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 852-1095 1.19e-12

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 71.47  E-value: 1.19e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  852 EPGAMGLPGLEGFPGVKGDRGPAGPPGIAGISGKPGAPGPPGVPGEQGERGPIG---------DTGFPGPEGPSGKPGIN 922
Cdd:NF038329  121 EPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGpagkdgeagAKGPAGEKGPQGPRGET 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  923 GKDGLPGAQGIMGKPGDRGPKGERGDQGIPGDrGPQGERGKPGLTGMKGAIGPVGPAGSKGSTGPPGHQGPPGNPGIPGT 1002
Cdd:NF038329  201 GPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGD-GQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGE 279

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883 1003 paDAVSFEEIKHYINQEVlrifeermavflsqlKLPAAmlsaqaHGRPGPPGKDGLPgppgdpgpqgyrGQKGERGEPG- 1081
Cdd:NF038329  280 --RGPVGPAGKDGQNGKD---------------GLPGK------DGKDGQNGKDGLP------------GKDGKDGQPGk 324

                         250
                  ....*....|....*..
gi 145558883 1082 ---IGLPGSPGLPGSSA 1095
Cdd:NF038329  325 dglPGKDGKDGQPGKPA 341
SPT5 COG5164
Transcription elongation factor SPT5 [Transcription];
313-643 1.99e-07

Transcription elongation factor SPT5 [Transcription];


Pssm-ID: 444063 [Multi-domain]  Cd Length: 495  Bit Score: 55.04  E-value: 1.99e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  313 GLDGTPGLPGQKGEQGLEGIKGEIGEKGEPGAKGDSGLDGLNGQDGLKGDSGPQGPPGPKGDKGDMGPPGPPALTGSIGI 392
Cdd:COG5164     7 GKTGPSDPGGVTTPAGSQGSTKPAQNQGSTRPAGNTGGTRPAQNQGSTTPAGNTGGTRPAGNQGATGPAQNQGGTTPAQN 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  393 QGPQGPPGKEGQRGRRGKTGPPGNPGPPGPPGPPGLQGLQQPFGGyfnkgtgehGASGPKGEKGDTglPGFPGSVGPKGH 472
Cdd:COG5164    87 QGGTRPAGNTGGTTPAGDGGATGPPDDGGATGPPDDGGSTTPPSG---------GSTTPPGDGGST--PPGPGSTGPGGS 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  473 KGEPGEPLTKGEKGDRGEPGLLGPQGIKGepgdpgpPGLLGSPGLKGQQGPAGSMGPRGPPGDVGLPGEHGIPGKQGVKG 552
Cdd:COG5164   156 TTPPGDGGSTTPPGPGGSTTPPDDGGSTT-------PPNKGETGTDIPTGGTPRQGPDGPVKKDDKNGKGNPPDDRGGKT 228

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  553 EKGDPGGRLGPPGLPGLKGDAGPPGISLP---GKPGLDGNPGSPGPRGPKGERGLPGLHGSPGDTGPPGVGIPGRTGSQG 629
Cdd:COG5164   229 GPKDQRPKTNPIERRGPERPEAAALPAELtalEAENRAANPEPATKTIPETTTVKDLATVLGKKGSDLVTNLMKKGKGTN 308

                         330
                  ....*....|....
gi 145558883  630 PAGEPGIQGPRGLP 643
Cdd:COG5164   309 INAALDFETAATIA 322
Collagen pfam01391
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ...
 923-979 7.44e-05

Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.


Pssm-ID: 460189 [Multi-domain]  Cd Length: 57  Bit Score: 41.33  E-value: 7.44e-05
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 145558883   923 GKDGLPGAQGIMGKPGDRGPKGERGDQGIPGDRGPQGERGKPGLTGMKGAIGPVGPA 979
Cdd:pfam01391    1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGPP 57
Collagen pfam01391
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ...
 522-578 1.13e-04

Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.


Pssm-ID: 460189 [Multi-domain]  Cd Length: 57  Bit Score: 40.94  E-value: 1.13e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 145558883   522 GPAGSMGPRGPPGDVGLPGEHGIPGKQGVKGEKGDPGgrlgPPGLPGLKGDAGPPGI 578
Cdd:pfam01391    1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPG----PPGPPGPPGPPGAPGA 53
SPT5 COG5164
Transcription elongation factor SPT5 [Transcription];
749-985 1.67e-03

Transcription elongation factor SPT5 [Transcription];


Pssm-ID: 444063 [Multi-domain]  Cd Length: 495  Bit Score: 42.32  E-value: 1.67e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  749 PGIHGEKGDEGLQGIPGLSGAPGPTGPPGLTGRTGHPGPTGAKGDKGSEGPPGKPGPPGPPgvplnEGNGMSSLYKIQGG 828
Cdd:COG5164     6 PGKTGPSDPGGVTTPAGSQGSTKPAQNQGSTRPAGNTGGTRPAQNQGSTTPAGNTGGTRPA-----GNQGATGPAQNQGG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  829 VNVPGYPGPPGPPGPKGDPGPVGEPGAMGLPGLEGFPGVKGDRGPAGPPGIAGISGKPGAPGPPGVPGEQGERG---PIG 905
Cdd:COG5164    81 TTPAQNQGGTRPAGNTGGTTPAGDGGATGPPDDGGATGPPDDGGSTTPPSGGSTTPPGDGGSTPPGPGSTGPGGsttPPG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  906 DTGFPGPEGPSGKPGINGKDGL--PGAQGIMGKPGDRGPKGERGDQGIPGDRGPQGERGKP----GLTGMKGAIGPVGPA 979
Cdd:COG5164   161 DGGSTTPPGPGGSTTPPDDGGSttPPNKGETGTDIPTGGTPRQGPDGPVKKDDKNGKGNPPddrgGKTGPKDQRPKTNPI 240


                  ....*.
gi 145558883  980 GSKGST 985
Cdd:COG5164   241 ERRGPE 246
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
 558-653 8.73e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 40.05  E-value: 8.73e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  558 GGRLGPPGLPGLKGDAGPPGISLPgkpgldgNPGSPGPRGPKGERGLPGLHGSPGDTGPPGVGIPGRTGSQGPAGEPGIQ 637
Cdd:PRK14959  375 GGGASAPSGSAAEGPASGGAATIP-------TPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDDAPPAPPRSG 447

                          90
                  ....*....|....*..
gi 145558883  638 G-PRGLPGLPGTPGMPG 653
Cdd:PRK14959  448 IpPRPAPRMPEASPVPG 464
 
Name Accession Description Interval E-value
TSPN smart00210
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of ...
 50-229 7.03e-48

Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of thrombospondin


Pssm-ID: 214560  Cd Length: 184  Bit Score: 168.69  E-value: 7.03e-48
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883     50 ELSGFDLGE-SFALRHAFC-EGDKTCFKLGS-VLLIRDTVKIFPKGLPEEYAIAVMFRVrrsTKKERWFLWKILNQQNMA 126
Cdd:smart00210    4 LLQVFDLPSlSFAIRQVVGpEPGSPAYRLGDpALVPQPTRDLFPSGLPEDFSLLTTFRQ---TPKSRGVLFAIYDAQNVR 80

                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883    127 QISVVIDGTKKVVEFMFRGAEGDLLNYVFKNRelrPLFDRQWHKLGIGVQSRVLSLYMDCNLIASRHTEEK--NSVDFQG 204
Cdd:smart00210   81 QFGLEVDGRANTLLLRYQGVDGKQHTVSFRNL---PLADGQWHKLALSVSGSSATLYVDCNEIDSRPLDRPgqPPIDTDG 157

                           170       180
                    ....*....|....*....|....*
gi 145558883    205 RTIIAARASDGKPVDIELHQLRIYC 229
Cdd:smart00210  158 IEVRGAQAADRKPFQGDLQQLKIVC 182
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 440-660 1.65e-33

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 135.03  E-value: 1.65e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  440 NKGTGEHGASGPKGEKGDTGLPGFPGSVGPKGHKGEPGEPLTKGEKGDRGEPGLLGPQGIKGEPGDPGPPGLLGSPGLKG 519
Cdd:NF038329  107 DEGLQQLKGDGEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKG 186

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  520 QQGPAGSMGPRGPPGDVGLPGEHGIPGKQGVKGEKGDPG----------GRLGPPGLPGLKGDAGPPGISLP-GKPGLDG 588
Cdd:NF038329  187 PAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGpagpagdgqqGPDGDPGPTGEDGPQGPDGPAGKdGPRGDRG 266

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 145558883  589 NPGSPGPRGPKGERGLPGLHGSPGDTGPPGV-GIPGRTGSQGPAGEPGIQGPRGLPGLPGTPGMPGNDGAPGK 660
Cdd:NF038329  267 EAGPDGPDGKDGERGPVGPAGKDGQNGKDGLpGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGK 339
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 327-653 1.86e-27

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 116.93  E-value: 1.86e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  327 QGLEGIKGEiGEKGEPGAKGDSGLDGLNGQDGLKGDsgpqgppgpkgdKGDMGPPGPPALTGSIGIQGPQGPPGKEGQRG 406
Cdd:NF038329  108 EGLQQLKGD-GEKGEPGPAGPAGPAGEQGPRGDRGE------------TGPAGPAGPPGPQGERGEKGPAGPQGEAGPQG 174

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  407 RRGKtgppgnpgppgpPgppglqglqqpfggyfnkgtGEHGASGPKGEKGDTGLPGFPGSVGPKGHKGEPGEpltKGEKG 486
Cdd:NF038329  175 PAGK------------D--------------------GEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGP---DGEAG 219

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  487 DRGEPGLLGPQGikgepgdpgppgllgspglKGQQGPAGSMGPRGPPGDVGLPGEhgiPGKQGVKGEKGDPggrlGPPGL 566
Cdd:NF038329  220 PAGEDGPAGPAG-------------------DGQQGPDGDPGPTGEDGPQGPDGP---AGKDGPRGDRGEA----GPDGP 273

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  567 PGLKGDAGPPGisLPGKPGLDGNPGSPGPRGPKGERGLPGLHGSPGDTGPPGV-GIPGRTGSQGPAGEPG------IQGP 639
Cdd:NF038329  274 DGKDGERGPVG--PAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKdGLPGKDGKDGQPGKPApktpevPQKP 351

                         330
                  ....*....|....
gi 145558883  640 RGLPGLPGTPGMPG 653
Cdd:NF038329  352 DTAPHTPKTPQIPG 365
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 290-598 3.58e-25

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 109.99  E-value: 3.58e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  290 EAGLPGTLRSIGHKGDKGEPGEHGLDGTPGLPGQKGEQGLEGIKGEIGEKGEPGAKGDSGLDGLNGQDGLKGDSGPQGPp 369
Cdd:NF038329  118 EKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGP- 196

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  370 gpkgdKGDMGPPGPpaltgsigiQGPQGPPGKEGQRGRRGKtgppgnpgppgppgppglqglqqpfggyfnkgtgehgaS 449
Cdd:NF038329  197 -----RGETGPAGE---------QGPAGPAGPDGEAGPAGE--------------------------------------D 224

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  450 GPKGEKGDtglpgfpgsvGPKGHKGEPGEPLTKGEKGDRGEPGLLGPQGIKGEpgdpgppgllgsPGLKGQQGPAGSMGP 529
Cdd:NF038329  225 GPAGPAGD----------GQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGE------------AGPDGPDGKDGERGP 282

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  530 RGPPGDVGLPGEHGIPGKQGVKGEKGDpggrlgpPGLPGLKGDAGPPGI-SLPGKPGLDGNPGSPGPRGP 598
Cdd:NF038329  283 VGPAGKDGQNGKDGLPGKDGKDGQNGK-------DGLPGKDGKDGQPGKdGLPGKDGKDGQPGKPAPKTP 345
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 699-968 1.64e-18

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 89.58  E-value: 1.64e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  699 GLKSIKGDdGSTGEPGKYDPAARKGDVGPRGPPGFPGREGPKGSKGERGYPGIHGEKGDEGLQGIPGLSGAPGPTGPpgl 778
Cdd:NF038329  109 GLQQLKGD-GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGA--- 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  779 tgrTGHPGPTGAKGDKGSEGPPGKPGppgppgvplnegngmsslykiQGGVNVPGYPGPPGPPGPKGDPGPVGEPGAMGL 858
Cdd:NF038329  185 ---KGPAGEKGPQGPRGETGPAGEQG---------------------PAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGD 240

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  859 PGLEGFPGVKGDRGPAGPPGIAGisgkpgapgppgVPGEQGERGPIGDTGFPGPEGPSGKPGINGKDGLPGAQGIMGKPG 938
Cdd:NF038329  241 PGPTGEDGPQGPDGPAGKDGPRG------------DRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNG 308

                         250       260       270
                  ....*....|....*....|....*....|
gi 145558883  939 DRGPKGERGDQGIPGDRGPQGERGKPGLTG 968
Cdd:NF038329  309 KDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 864-1092 4.76e-18

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 88.42  E-value: 4.76e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  864 FPGVKGDRGPAGPPGiagisgkpgapgppgvpgEQGERGPIGDTGFPGPEGPSGKPGINGKDGLPGAQGIMGKPGDRGPK 943
Cdd:NF038329  115 GDGEKGEPGPAGPAG------------------PAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPA 176

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  944 GERGDQGIPGDRGPQGERGKPGLTGMKGAIGPVGPAGSKGSTGPPGHQGPPGNPGIPGTPADAvsfeeikhyinqevlri 1023
Cdd:NF038329  177 GKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDG----------------- 239

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 145558883 1024 feermavflsqlkLPAAMLSAQAHGRPGPPGKDGLPGPPGDPGPQGYRGQKGERGEPGI----GLPGSPGLPG 1092
Cdd:NF038329  240 -------------DPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPagkdGQNGKDGLPG 299
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 516-795 9.08e-17

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 84.19  E-value: 9.08e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  516 GLKGQQGPAGSMGPRGPPGDVGLPGEHGIPGKQGVKGEKGDPGgrlgPPGLPGLKGDAGPPGisLPGKPGLDGNPGSPGP 595
Cdd:NF038329  117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERG----EKGPAGPQGEAGPQG--PAGKDGEAGAKGPAGE 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  596 RGPKGERGLPGLHGSPGDTGPPGvgipgrtgsqgPAGEPGIQGPRGLPGLPGtpgmpgndgapgkdgkpglpgppgdpia 675
Cdd:NF038329  191 KGPQGPRGETGPAGEQGPAGPAG-----------PDGEAGPAGEDGPAGPAG---------------------------- 231

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  676 lpllgdigallknfcgncqanvpglksiKGDDGSTGEPGKYDPAARKGDvgprgpPGFPGREGPKGSKGERGYPGIHGEK 755
Cdd:NF038329  232 ----------------------------DGQQGPDGDPGPTGEDGPQGP------DGPAGKDGPRGDRGEAGPDGPDGKD 277

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 145558883  756 GDEGLQGIPGLSGAPGPTGPPGLTGRTGHPGPTGAKGDKG 795
Cdd:NF038329  278 GERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDG 317
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 741-983 2.30e-16

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 83.03  E-value: 2.30e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  741 GSKGERGYPGIHGEKGDEGLQGIPGLSGAPGPTGPPGLTGRTGHPGPTGAKGDKGSEGPPGKPGppgppgvplnegngms 820
Cdd:NF038329  117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDG---------------- 180

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  821 slykiqggvnvpgypgppgppgpkgdpgpvgEPGAMGLPGLEGFPGVKGDRGPAGPPGIAGISGKPGAPGPPGVPGEQGE 900
Cdd:NF038329  181 -------------------------------EAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGP 229

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  901 RGPiGDTGFPGPEGPSGKPGINGKDGLPGAQGimgKPGDRGPKGERGDQGIPGDRGPQGERGKPGLTGMKGAIGPVGPAG 980
Cdd:NF038329  230 AGD-GQQGPDGDPGPTGEDGPQGPDGPAGKDG---PRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDG 305


                  ...
gi 145558883  981 SKG 983
Cdd:NF038329  306 QNG 308
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 852-1095 1.19e-12

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 71.47  E-value: 1.19e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  852 EPGAMGLPGLEGFPGVKGDRGPAGPPGIAGISGKPGAPGPPGVPGEQGERGPIG---------DTGFPGPEGPSGKPGIN 922
Cdd:NF038329  121 EPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGpagkdgeagAKGPAGEKGPQGPRGET 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  923 GKDGLPGAQGIMGKPGDRGPKGERGDQGIPGDrGPQGERGKPGLTGMKGAIGPVGPAGSKGSTGPPGHQGPPGNPGIPGT 1002
Cdd:NF038329  201 GPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGD-GQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGE 279

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883 1003 paDAVSFEEIKHYINQEVlrifeermavflsqlKLPAAmlsaqaHGRPGPPGKDGLPgppgdpgpqgyrGQKGERGEPG- 1081
Cdd:NF038329  280 --RGPVGPAGKDGQNGKD---------------GLPGK------DGKDGQNGKDGLP------------GKDGKDGQPGk 324

                         250
                  ....*....|....*..
gi 145558883 1082 ---IGLPGSPGLPGSSA 1095
Cdd:NF038329  325 dglPGKDGKDGQPGKPA 341
SPT5 COG5164
Transcription elongation factor SPT5 [Transcription];
313-643 1.99e-07

Transcription elongation factor SPT5 [Transcription];


Pssm-ID: 444063 [Multi-domain]  Cd Length: 495  Bit Score: 55.04  E-value: 1.99e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  313 GLDGTPGLPGQKGEQGLEGIKGEIGEKGEPGAKGDSGLDGLNGQDGLKGDSGPQGPPGPKGDKGDMGPPGPPALTGSIGI 392
Cdd:COG5164     7 GKTGPSDPGGVTTPAGSQGSTKPAQNQGSTRPAGNTGGTRPAQNQGSTTPAGNTGGTRPAGNQGATGPAQNQGGTTPAQN 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  393 QGPQGPPGKEGQRGRRGKTGPPGNPGPPGPPGPPGLQGLQQPFGGyfnkgtgehGASGPKGEKGDTglPGFPGSVGPKGH 472
Cdd:COG5164    87 QGGTRPAGNTGGTTPAGDGGATGPPDDGGATGPPDDGGSTTPPSG---------GSTTPPGDGGST--PPGPGSTGPGGS 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  473 KGEPGEPLTKGEKGDRGEPGLLGPQGIKGepgdpgpPGLLGSPGLKGQQGPAGSMGPRGPPGDVGLPGEHGIPGKQGVKG 552
Cdd:COG5164   156 TTPPGDGGSTTPPGPGGSTTPPDDGGSTT-------PPNKGETGTDIPTGGTPRQGPDGPVKKDDKNGKGNPPDDRGGKT 228

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  553 EKGDPGGRLGPPGLPGLKGDAGPPGISLP---GKPGLDGNPGSPGPRGPKGERGLPGLHGSPGDTGPPGVGIPGRTGSQG 629
Cdd:COG5164   229 GPKDQRPKTNPIERRGPERPEAAALPAELtalEAENRAANPEPATKTIPETTTVKDLATVLGKKGSDLVTNLMKKGKGTN 308

                         330
                  ....*....|....
gi 145558883  630 PAGEPGIQGPRGLP 643
Cdd:COG5164   309 INAALDFETAATIA 322
Collagen pfam01391
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ...
 923-979 7.44e-05

Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.


Pssm-ID: 460189 [Multi-domain]  Cd Length: 57  Bit Score: 41.33  E-value: 7.44e-05
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 145558883   923 GKDGLPGAQGIMGKPGDRGPKGERGDQGIPGDRGPQGERGKPGLTGMKGAIGPVGPA 979
Cdd:pfam01391    1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGPP 57
Collagen pfam01391
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ...
 914-968 8.21e-05

Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.


Pssm-ID: 460189 [Multi-domain]  Cd Length: 57  Bit Score: 41.33  E-value: 8.21e-05
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 145558883   914 GPSGKPGINGKDGLPGAQGIMGKPGDRGPKGERGDQGIPGDRGPQGERGKPGLTG 968
Cdd:pfam01391    1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPG 55
Collagen pfam01391
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ...
 522-578 1.13e-04

Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.


Pssm-ID: 460189 [Multi-domain]  Cd Length: 57  Bit Score: 40.94  E-value: 1.13e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 145558883   522 GPAGSMGPRGPPGDVGLPGEHGIPGKQGVKGEKGDPGgrlgPPGLPGLKGDAGPPGI 578
Cdd:pfam01391    1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPG----PPGPPGPPGPPGAPGA 53
Collagen pfam01391
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ...
 568-618 2.47e-04

Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.


Pssm-ID: 460189 [Multi-domain]  Cd Length: 57  Bit Score: 40.17  E-value: 2.47e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 145558883   568 GLKGDAGPPGIslPGKPGLDGNPGSPGPRGPKGERGLPGLHGSPGDTGPPG 618
Cdd:pfam01391    1 GPPGPPGPPGP--PGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPG 49
Collagen pfam01391
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ...
 897-950 3.28e-04

Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.


Pssm-ID: 460189 [Multi-domain]  Cd Length: 57  Bit Score: 39.78  E-value: 3.28e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 145558883   897 EQGERGPIGDTGFPGPEGPSGKPGINGKDGLPGAQGIMGKPGDRGPKGERGDQG 950
Cdd:pfam01391    2 PPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPG 55
SPT5 COG5164
Transcription elongation factor SPT5 [Transcription];
749-985 1.67e-03

Transcription elongation factor SPT5 [Transcription];


Pssm-ID: 444063 [Multi-domain]  Cd Length: 495  Bit Score: 42.32  E-value: 1.67e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  749 PGIHGEKGDEGLQGIPGLSGAPGPTGPPGLTGRTGHPGPTGAKGDKGSEGPPGKPGPPGPPgvplnEGNGMSSLYKIQGG 828
Cdd:COG5164     6 PGKTGPSDPGGVTTPAGSQGSTKPAQNQGSTRPAGNTGGTRPAQNQGSTTPAGNTGGTRPA-----GNQGATGPAQNQGG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  829 VNVPGYPGPPGPPGPKGDPGPVGEPGAMGLPGLEGFPGVKGDRGPAGPPGIAGISGKPGAPGPPGVPGEQGERG---PIG 905
Cdd:COG5164    81 TTPAQNQGGTRPAGNTGGTTPAGDGGATGPPDDGGATGPPDDGGSTTPPSGGSTTPPGDGGSTPPGPGSTGPGGsttPPG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  906 DTGFPGPEGPSGKPGINGKDGL--PGAQGIMGKPGDRGPKGERGDQGIPGDRGPQGERGKP----GLTGMKGAIGPVGPA 979
Cdd:COG5164   161 DGGSTTPPGPGGSTTPPDDGGSttPPNKGETGTDIPTGGTPRQGPDGPVKKDDKNGKGNPPddrgGKTGPKDQRPKTNPI 240


                  ....*.
gi 145558883  980 GSKGST 985
Cdd:COG5164   241 ERRGPE 246
Collagen pfam01391
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ...
 941-984 2.05e-03

Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.


Pssm-ID: 460189 [Multi-domain]  Cd Length: 57  Bit Score: 37.47  E-value: 2.05e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 145558883   941 GPKGERGDQGIPGDRGPQGERGKPGLTGMKGAIGPVGPAGSKGS 984
Cdd:pfam01391    1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGP 44
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
 558-653 8.73e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 40.05  E-value: 8.73e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145558883  558 GGRLGPPGLPGLKGDAGPPGISLPgkpgldgNPGSPGPRGPKGERGLPGLHGSPGDTGPPGVGIPGRTGSQGPAGEPGIQ 637
Cdd:PRK14959  375 GGGASAPSGSAAEGPASGGAATIP-------TPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDDAPPAPPRSG 447

                          90
                  ....*....|....*..
gi 145558883  638 G-PRGLPGLPGTPGMPG 653
Cdd:PRK14959  448 IpPRPAPRMPEASPVPG 464
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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