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Conserved domains on  [gi|1446207991|gb|AXL96338|]
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tyrosine-protein kinase Wzc [Providencia alcalifaciens]

Protein Classification

P-loop NTPase family protein( domain architecture ID 1562424)

P-loop NTPase (nucleoside triphosphate hydrolase) family protein contains two conserved sequence signatures, the Walker A motif (the P-loop proper) and Walker B motif which bind, respectively, the beta and gamma phosphate moieties of the bound nucleotide (typically ATP or GTP), and a Mg(2+) cation

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
P-loop_NTPase super family cl38936
P-loop containing Nucleoside Triphosphate Hydrolases; Members of the P-loop NTPase domain ...
 1-650 0e+00

P-loop containing Nucleoside Triphosphate Hydrolases; Members of the P-loop NTPase domain superfamily are characterized by a conserved nucleotide phosphate-binding motif, also referred to as the Walker A motif (GxxxxGK[S/T], where x is any residue), and the Walker B motif (hhhh[D/E], where h is a hydrophobic residue). The Walker A and B motifs bind the beta-gamma phosphate moiety of the bound nucleotide (typically ATP or GTP) and the Mg2+ cation, respectively. The P-loop NTPases are involved in diverse cellular functions, and they can be divided into two major structural classes: the KG (kinase-GTPase) class which includes Ras-like GTPases and its circularly permutated YlqF-like; and the ASCE (additional strand catalytic E) class which includes ATPase Binding Cassette (ABC), DExD/H-like helicases, 4Fe-4S iron sulfur cluster binding proteins of NifH family, RecA-like F1-ATPases, and ATPases Associated with a wide variety of Activities (AAA). Also included are a diverse set of nucleotide/nucleoside kinase families.


The actual alignment was detected with superfamily member PRK11519:

Pssm-ID: 476819 [Multi-domain]  Cd Length: 719  Bit Score: 584.04  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991   1 MYCWFASPIYQANATLQYDKVNQASLLEKMNDGMLfgGNNGQIDSEIEIIKSRMVLGKTVSDLNLDIQILPS--KIFSKF 78
Cdd:PRK11519   47 VYTFFATPIYSADALVQIEQNSGNSLVQDIGSALA--NKPPASDAEIQLIRSRLVLGKTVDDLDLDIAVSKNtfPIFGAG 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991  79 LS-----DAAIVHIAEYQLPPNLIGQPATLTFLNDRQYTLAFADQI-YHGQIGTMLKQGEIHLLIDSYIAQGGEKLTLVK 152
Cdd:PRK11519  125 WDrlmgrQNETVKVTTFNRPKEMADQVFTLNVLDDKNYQLSSDGGFsARGQVGQMLKKDGVTLMVEAIHARPGTEFTVTK 204

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 153 KDRYSAIENLRHRLSMNEASKGSGIINLIVKGTNQRENIEILDNVIQNYINQNRAHRKQATNNTLIFLDNYIPKVKNKLD 232
Cdd:PRK11519  205 YSTLGMINNLQNNLTVTENGKDTGVLSLTYTGEDREQIRDILNSITRNYLEQNIERKSEEASKSLAFLAQQLPEVRSRLD 284

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 233 HYENQLNTFRKQNESIDLTLEAKSALESALHIEEKLNELTFKEVELQQRYTRSHPTYQSLLDKRQKLLLEKEKASKNIQQ 312
Cdd:PRK11519  285 VAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLYTKEHPAYRTLLEKRKALEDEKAKLNGRVTA 364

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 313 LPNTQQQIIRLTRDVESEQAIYNQLVTKQRELSVLNSGITADVRIIDSAESYPVAIAPKKSLIMMLASLLGLVMGCAFVI 392
Cdd:PRK11519  365 MPKTQQEIVRLTRDVESGQQVYMQLLNKQQELKITEASTVGDVRIVDPAITQPGVLKPKKALIILGAIILGLMLSIVGVL 444

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 393 GKELLNNKIKSTEDLEALDLRVYATVPFS----------LDEKKSRYRESKKpLSIENPADMAIESIRSLRTSVYFSVMN 462
Cdd:PRK11519  445 LRSLFNRGIESPQVLEEHGISVYASIPLSewqkardsvkTIKGIKRYKQSQL-LAVGNPTDLAIEAIRSLRTSLHFAMMQ 523

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 463 QDNNIVMVTSASPNVGKSFITANMAVVLANAGKKILLIDTDLRKGHIHKTFGLDNKSGLSEFLSQHGGDSISKHQQVIEN 542
Cdd:PRK11519  524 AQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSIAN 603

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 543 LDIISRGKSTTHSSELLMSEQFKHLLDSVKHQYDMVLLDTAPIFAITDPAIIGKYAGTSLLVAYYGVNTVKEIERALKHF 622
Cdd:PRK11519  604 FDLIPRGQVPPNPSELLMSERFAELVNWASKNYDLVLIDTPPILAVTDAAIVGRHVGTTLMVARYAVNTLKEVETSLSRF 683

                         650       660       670
                  ....*....|....*....|....*....|..
gi 1446207991 623 KQNNIEITGAILNGIDEKSDDYS----YVYQY 650
Cdd:PRK11519  684 EQNGIPVKGVILNSIFRRASAYQdygyYEYEY 715
 
Name Accession Description Interval E-value
PRK11519 PRK11519
tyrosine-protein kinase Wzc;
1-650 0e+00

tyrosine-protein kinase Wzc;


Pssm-ID: 183173 [Multi-domain]  Cd Length: 719  Bit Score: 584.04  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991   1 MYCWFASPIYQANATLQYDKVNQASLLEKMNDGMLfgGNNGQIDSEIEIIKSRMVLGKTVSDLNLDIQILPS--KIFSKF 78
Cdd:PRK11519   47 VYTFFATPIYSADALVQIEQNSGNSLVQDIGSALA--NKPPASDAEIQLIRSRLVLGKTVDDLDLDIAVSKNtfPIFGAG 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991  79 LS-----DAAIVHIAEYQLPPNLIGQPATLTFLNDRQYTLAFADQI-YHGQIGTMLKQGEIHLLIDSYIAQGGEKLTLVK 152
Cdd:PRK11519  125 WDrlmgrQNETVKVTTFNRPKEMADQVFTLNVLDDKNYQLSSDGGFsARGQVGQMLKKDGVTLMVEAIHARPGTEFTVTK 204

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 153 KDRYSAIENLRHRLSMNEASKGSGIINLIVKGTNQRENIEILDNVIQNYINQNRAHRKQATNNTLIFLDNYIPKVKNKLD 232
Cdd:PRK11519  205 YSTLGMINNLQNNLTVTENGKDTGVLSLTYTGEDREQIRDILNSITRNYLEQNIERKSEEASKSLAFLAQQLPEVRSRLD 284

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 233 HYENQLNTFRKQNESIDLTLEAKSALESALHIEEKLNELTFKEVELQQRYTRSHPTYQSLLDKRQKLLLEKEKASKNIQQ 312
Cdd:PRK11519  285 VAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLYTKEHPAYRTLLEKRKALEDEKAKLNGRVTA 364

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 313 LPNTQQQIIRLTRDVESEQAIYNQLVTKQRELSVLNSGITADVRIIDSAESYPVAIAPKKSLIMMLASLLGLVMGCAFVI 392
Cdd:PRK11519  365 MPKTQQEIVRLTRDVESGQQVYMQLLNKQQELKITEASTVGDVRIVDPAITQPGVLKPKKALIILGAIILGLMLSIVGVL 444

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 393 GKELLNNKIKSTEDLEALDLRVYATVPFS----------LDEKKSRYRESKKpLSIENPADMAIESIRSLRTSVYFSVMN 462
Cdd:PRK11519  445 LRSLFNRGIESPQVLEEHGISVYASIPLSewqkardsvkTIKGIKRYKQSQL-LAVGNPTDLAIEAIRSLRTSLHFAMMQ 523

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 463 QDNNIVMVTSASPNVGKSFITANMAVVLANAGKKILLIDTDLRKGHIHKTFGLDNKSGLSEFLSQHGGDSISKHQQVIEN 542
Cdd:PRK11519  524 AQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSIAN 603

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 543 LDIISRGKSTTHSSELLMSEQFKHLLDSVKHQYDMVLLDTAPIFAITDPAIIGKYAGTSLLVAYYGVNTVKEIERALKHF 622
Cdd:PRK11519  604 FDLIPRGQVPPNPSELLMSERFAELVNWASKNYDLVLIDTPPILAVTDAAIVGRHVGTTLMVARYAVNTLKEVETSLSRF 683

                         650       660       670
                  ....*....|....*....|....*....|..
gi 1446207991 623 KQNNIEITGAILNGIDEKSDDYS----YVYQY 650
Cdd:PRK11519  684 EQNGIPVKGVILNSIFRRASAYQdygyYEYEY 715
eps_transp_fam TIGR01005
exopolysaccharide transport protein family; The model describes the exopolysaccharide ...
 2-650 1.88e-90

exopolysaccharide transport protein family; The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]


Pssm-ID: 273391 [Multi-domain]  Cd Length: 764  Bit Score: 297.02  E-value: 1.88e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991   2 YCWFASPIYQANATLQYDKvNQASLLEKMNDGMLFGGNNGQIDSEIEIIKSRMVLGKTVSDLNLDI-------QILPSKI 74
Cdd:TIGR01005  34 YAFFARPVYEADIMILLDD-NLNKAAEEEGDPSNLFDLDTDAAAAIEILKSGELAGKAVDKLHLSEnakilnpPRFPVDL 112

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991  75 FSKFLSDAAI-------------------VHIAEYQLPPNLIGQPATLTFLNDRQYTL------AFADQIYHGQIGTMLK 129
Cdd:TIGR01005 113 IGAWIKSAAGlfsepggfdlgeeaagnerIDKAAADIPEALAGEPFKLISLGAGAFRLedkllaAPIAGGVAEALEADQL 192

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 130 QGEIHLLIDSYIAQGGEKLTLVKKDRYSAIENLRHRLSMNEASKGSGIINLI-VKGTNQRENIEILDNVIQNYINQNRAH 208
Cdd:TIGR01005 193 IANFEAQENALTAKAEALFDLEQDSQAAALEMAHDKAEIAEKAAQGEIIGEAqLADLNPALIAAIADQAAAEARADNIKR 272

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 209 RKQATNNTLIFLDNYIPKVKNKLDHYENQLNTFRKQNESIDLTLEAKSALESALHIEEKLNELTFKEVELQQRYTRSHPT 288
Cdd:TIGR01005 273 IADEAEENAVFLAGILPKEGDELEIADLKTNELRNGKGEFDLSDEFGADHPEAVCSAPSLQELKAKIAEELQQFTASHKG 352

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 289 YQSLLDKRQKLLLEK-EKASKNIQQLPNTQQQIIRLTRDVESEQAIYNQLVTKQRELSVLNSGITADVRIIDSAESYPVA 367
Cdd:TIGR01005 353 EQAIAQQIEESLRGKiNGIAGKLKDAPEIEQDLRELEQDAAADKELYESLLGDMEQAKLQKAFKIAKARLIDEAAVPEEP 432

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 368 IAPKKSLIMMLASLLGLVMGCAFVIGKELLNNKIKSTEDLEA-LDLRVYATVPFS------------------------L 422
Cdd:TIGR01005 433 SKPKKLMTLALAAVLGMMLGGAAAAFLEALEGGFRDEGDIEEhLGHRSLATVPLLdtqmdkkaqlthahfgsvkrhdeaV 512

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 423 DEKKSRYRESKKplSIENPADMAIESIRSLRTSVYFSVMNQDNNIVMVTSASPNVGKSFITANMAVVLANAGKKILLIDT 502
Cdd:TIGR01005 513 DDTMPFQLLARI--VPDAPRSTFAEAFRNAKLACDFALADAENNLIAIAGALPDEGKSFIAANFAALIAAGGKRTLLIDA 590

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 503 DLRKGHIHKTFGLDNKSGLSEFLSqhGGDSISK--HQQVIENLDIISRGKSTT---HSSELLMSEQFKHLLDSVKHQYDM 577
Cdd:TIGR01005 591 DIRKGGLHQMFGKAPKPGLLDLLA--GEASIEAgiHRDQRPGLAFIAAGGASHfphNPNELLANPAMAELIDNARNAFDL 668

                         650       660       670       680       690       700       710
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1446207991 578 VLLDTAPIFAITDPAIIGKYAGTSLLVAYYGVNTVKEIERALKHFKQNNIEITGAILNGIDEKS-DDYSYVYQY 650
Cdd:TIGR01005 669 VLVDLAALAAVADAAAFAALADGILFVTEFERSPLGEIRDLIHQEPHANSDVLGVIFNALDMNElGKYGDFDGA 742
BY-kinase cd05387
bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on ...
 447-636 3.16e-64

bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.


Pssm-ID: 349772 [Multi-domain]  Cd Length: 190  Bit Score: 210.12  E-value: 3.16e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 447 ESIRSLRTSVYFSVMNQDNNIVMVTSASPNVGKSFITANMAVVLANAGKKILLIDTDLRKGHIHKTFGLDNKSGLSEFLS 526
Cdd:cd05387     1 EAFRTLRTNLLFAGSDAGPKVIAVTSASPGEGKSTVAANLAVALAQSGKRVLLIDADLRRPSLHRLLGLPNEPGLSEVLS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 527 qhGGDSISK--HQQVIENLDIISRGKSTTHSSELLMSEQFKHLLDSVKHQYDMVLLDTAPIFAITDPAIIGKYAGTSLLV 604
Cdd:cd05387    81 --GQASLEDviQSTNIPNLDVLPAGTVPPNPSELLSSPRFAELLEELKEQYDYVIIDTPPVLAVADALILAPLVDGVLLV 158

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1446207991 605 AYYGVNTVKEIERALKHFKQNNIEITGAILNG 636
Cdd:cd05387   159 VRAGKTRRREVKEALERLEQAGAKVLGVVLNK 190
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
2-650 6.83e-64

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 223.74  E-value: 6.83e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991   2 YCWFASPIYQANATLQYDKVNQASLLEKMNDgmlFGGNNGQIDSEIEIIKSRMVLGKTVSDLNLDIQILPSKifskflsd 81
Cdd:COG3206    45 YALLLPPVYEASATLLVEPQSSDVLLSGLSS---LSASDSPLETQIEILKSRPVLERVVDKLNLDEDPLGEE-------- 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991  82 aaivhiaeyqlppnligqpatltflndrqytlafadqiyhgqigtmlkqgeihllidsyiaqggekltlvkKDRYSAIEN 161
Cdd:COG3206   114 -----------------------------------------------------------------------ASREAAIER 122

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 162 LRHRLSMnEASKGSGIINLIVKGTNQRENIEILDNVIQNYINQNRAHRKQATNNTLIFLDNYIPKVKNKLDHYENQLNTF 241
Cdd:COG3206   123 LRKNLTV-EPVKGSNVIEISYTSPDPELAAAVANALAEAYLEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEF 201

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 242 RKQNESIDLTLEAK------SALESALH--------------------------------------IEEKLNELTFKEVE 277
Cdd:COG3206   202 RQKNGLVDLSEEAKlllqqlSELESQLAearaelaeaearlaalraqlgsgpdalpellqspviqqLRAQLAELEAELAE 281

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 278 LQQRYTRSHPTYQSLLDKRQKLL---------------------------LEKEKAS--KNIQQLPNTQQQIIRLTRDVE 328
Cdd:COG3206   282 LSARYTPNHPDVIALRAQIAALRaqlqqeaqrilasleaelealqareasLQAQLAQleARLAELPELEAELRRLEREVE 361

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 329 SEQAIYNQLVTKQRELSVLNSGITADVRIIDSAESYPVAIAPKKSLIMMLASLLGLVMGCAFVIGKELLNNKIKSTEDLE 408
Cdd:COG3206   362 VARELYESLLQRLEEARLAEALTVGNVRVIDPAVVPLKPVSPKKLLILALGLLLGLLLGLGLALLLELLDRTIEEELELL 441

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 409 ALDLRVYATVPFSLDEKKSRYRESKKPLSI--ENPADMAIESIRSLRTSVYFSVMNQDNNIVMVTSASPNVGKSFITANM 486
Cdd:COG3206   442 LLLGLPLLGPLPPLKSKRERRRARLALLLLaaALAALLALLLALLLLLLLLLLLLLVSSSSGGGSSSTSSALAAASAAAA 521

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 487 AVVLANAGKKILLIDTDLRKGHIHKTFGLDNKSGLSEFLSQHGGDSISKHQQVIENLDIISRGKSTTHSSELLMSEQFKH 566
Cdd:COG3206   522 AAAALLLLLLLLLLLDLLLLLLLLLLLLLLLLGGLLLLLLLLLLLLLLLLLLLLLLLLLLPPPLLLPLLLLLLLLLLLLL 601

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 567 LLDSVKHQYDMVLLDTAPIFAITDPAIIGKYAGTSLLVAYYGVNTVKEIERALKHFKQNNIEITGAILNGIDEKSDDYSY 646
Cdd:COG3206   602 LLLLLLLSDDLILDLVPLLAALLAAAVLAVLVVVLLLVVALVALARLALLAAALLLLLVLVVVGGVVLGGVVYGYYYYYY 681


                  ....
gi 1446207991 647 VYQY 650
Cdd:COG3206   682 YYYY 685
GNVR pfam13807
G-rich domain on putative tyrosine kinase; This domain is found between two families, Wzz, ...
 315-396 2.39e-25

G-rich domain on putative tyrosine kinase; This domain is found between two families, Wzz, pfam02706 and CbiA pfam01656. There is a highly conserved GNVR sequence motif which characterizes this domain. The function is not known.


Pssm-ID: 433492 [Multi-domain]  Cd Length: 82  Bit Score: 99.98  E-value: 2.39e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 315 NTQQQIIRLTRDVESEQAIYNQLVTKQRELSVLNSGITADVRIIDSAESYPVAIAPKKSLIMMLASLLGLVMGCAFVIGK 394
Cdd:pfam13807   1 DTQQEILRLTRDVEVNTEIYTQLLNSNQELEVVKAGTVGNVRIVDTAVVPPKPVKPKKALIVVLALLLGLMLGVGLVLLR 80


                  ..
gi 1446207991 395 EL 396
Cdd:pfam13807  81 RA 82
ParA_partition NF041546
ParA family partition ATPase;
477-503 4.27e-03

ParA family partition ATPase;


Pssm-ID: 469431 [Multi-domain]  Cd Length: 202  Bit Score: 39.07  E-value: 4.27e-03
                          10        20
                  ....*....|....*....|....*..
gi 1446207991 477 VGKSFITANMAVVLANAGKKILLIDTD 503
Cdd:NF041546   11 VGKTTLATHLAAALARRGYRVLLVDAD 37
 
Name Accession Description Interval E-value
PRK11519 PRK11519
tyrosine-protein kinase Wzc;
1-650 0e+00

tyrosine-protein kinase Wzc;


Pssm-ID: 183173 [Multi-domain]  Cd Length: 719  Bit Score: 584.04  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991   1 MYCWFASPIYQANATLQYDKVNQASLLEKMNDGMLfgGNNGQIDSEIEIIKSRMVLGKTVSDLNLDIQILPS--KIFSKF 78
Cdd:PRK11519   47 VYTFFATPIYSADALVQIEQNSGNSLVQDIGSALA--NKPPASDAEIQLIRSRLVLGKTVDDLDLDIAVSKNtfPIFGAG 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991  79 LS-----DAAIVHIAEYQLPPNLIGQPATLTFLNDRQYTLAFADQI-YHGQIGTMLKQGEIHLLIDSYIAQGGEKLTLVK 152
Cdd:PRK11519  125 WDrlmgrQNETVKVTTFNRPKEMADQVFTLNVLDDKNYQLSSDGGFsARGQVGQMLKKDGVTLMVEAIHARPGTEFTVTK 204

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 153 KDRYSAIENLRHRLSMNEASKGSGIINLIVKGTNQRENIEILDNVIQNYINQNRAHRKQATNNTLIFLDNYIPKVKNKLD 232
Cdd:PRK11519  205 YSTLGMINNLQNNLTVTENGKDTGVLSLTYTGEDREQIRDILNSITRNYLEQNIERKSEEASKSLAFLAQQLPEVRSRLD 284

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 233 HYENQLNTFRKQNESIDLTLEAKSALESALHIEEKLNELTFKEVELQQRYTRSHPTYQSLLDKRQKLLLEKEKASKNIQQ 312
Cdd:PRK11519  285 VAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLYTKEHPAYRTLLEKRKALEDEKAKLNGRVTA 364

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 313 LPNTQQQIIRLTRDVESEQAIYNQLVTKQRELSVLNSGITADVRIIDSAESYPVAIAPKKSLIMMLASLLGLVMGCAFVI 392
Cdd:PRK11519  365 MPKTQQEIVRLTRDVESGQQVYMQLLNKQQELKITEASTVGDVRIVDPAITQPGVLKPKKALIILGAIILGLMLSIVGVL 444

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 393 GKELLNNKIKSTEDLEALDLRVYATVPFS----------LDEKKSRYRESKKpLSIENPADMAIESIRSLRTSVYFSVMN 462
Cdd:PRK11519  445 LRSLFNRGIESPQVLEEHGISVYASIPLSewqkardsvkTIKGIKRYKQSQL-LAVGNPTDLAIEAIRSLRTSLHFAMMQ 523

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 463 QDNNIVMVTSASPNVGKSFITANMAVVLANAGKKILLIDTDLRKGHIHKTFGLDNKSGLSEFLSQHGGDSISKHQQVIEN 542
Cdd:PRK11519  524 AQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSIAN 603

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 543 LDIISRGKSTTHSSELLMSEQFKHLLDSVKHQYDMVLLDTAPIFAITDPAIIGKYAGTSLLVAYYGVNTVKEIERALKHF 622
Cdd:PRK11519  604 FDLIPRGQVPPNPSELLMSERFAELVNWASKNYDLVLIDTPPILAVTDAAIVGRHVGTTLMVARYAVNTLKEVETSLSRF 683

                         650       660       670
                  ....*....|....*....|....*....|..
gi 1446207991 623 KQNNIEITGAILNGIDEKSDDYS----YVYQY 650
Cdd:PRK11519  684 EQNGIPVKGVILNSIFRRASAYQdygyYEYEY 715
PRK09841 PRK09841
tyrosine-protein kinase;
1-650 6.53e-169

tyrosine-protein kinase;


Pssm-ID: 182106 [Multi-domain]  Cd Length: 726  Bit Score: 499.82  E-value: 6.53e-169
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991   1 MYCWFASPIYQANATLQYDKVNQASLLEKMNDgmlFGGNNG-QIDSEIEIIKSRMVLGKTVSDLNLDIQILPS--KIFSK 77
Cdd:PRK09841   47 AYSLLSTPIYQADTLVQVEQKQGNAILSGLSD---MIPNSSpESAPEIQLLQSRMILGKTIAELNLRDIVEQKyfPIVGR 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991  78 FLS-----DAAIVHIAEYQLPP-NLIGQPATLTFLNDRQYTLAFADQIYHGQIGTMLKQGEIHLLIDSYIAQGGEKLTLV 151
Cdd:PRK09841  124 GWArltkeKPGELAISWMHIPQlNGQDQQLTLTVGENGHYTLEGEEFTVNGMVGQRLEKDGVALTIADIKAKPGTQFVLS 203

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 152 KKDRYSAIENLRHRLSMNEASKGSGIINLIVKGTNQRENIEILDNVIQNYINQNRAHRKQATNNTLIFLDNYIPKVKNKL 231
Cdd:PRK09841  204 QRTELEAINALQETFTVSERSKESGMLELTMTGDDPQLITRILNSIANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSEL 283

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 232 DHYENQLNTFRKQNESIDLTLEAKSALESALHIEEKLNELTFKEVELQQRYTRSHPTYQSLLDKRQKLLLEKEKASKNIQ 311
Cdd:PRK09841  284 DQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLYKKDHPTYRALLEKRQTLEQERKRLNKRVS 363

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 312 QLPNTQQQIIRLTRDVESEQAIYNQLVTKQRELSVLNSGITADVRIIDSAESYPVAIAPKKSLIMMLASLLGLVMGCAFV 391
Cdd:PRK09841  364 AMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELSISKSSAIGNVRIIDPAVTQPQPVKPKKALNVVLGFILGLFISVGAV 443

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 392 IGKELLNNKIKSTEDLEALDLRVYATVPFS--LDEK-----------KSRYRESKKP-LSIENPADMAIESIRSLRTSVY 457
Cdd:PRK09841  444 LARAMLRRGVEAPEQLEEHGISVYATIPMSewLDKRtrlrkknlfsnQQRHRTKNIPfLAVDNPADSAVEAVRALRTSLH 523

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 458 FSVMNQDNNIVMVTSASPNVGKSFITANMAVVLANAGKKILLIDTDLRKGHIHKTFGLDNKSGLSEFLSqhGGDSISKHQ 537
Cdd:PRK09841  524 FAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLA--GKDELNKVI 601

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 538 QVIE--NLDIISRGKSTTHSSELLMSEQFKHLLDSVKHQYDMVLLDTAPIFAITDPAIIGKYAGTSLLVAYYGVNTVKEI 615
Cdd:PRK09841  602 QHFGkgGFDVITRGQVPPNPSELLMRDRMRQLLEWANDHYDLVIVDTPPMLAVSDAAVVGRSVGTSLLVARFGLNTAKEV 681

                         650       660       670
                  ....*....|....*....|....*....|....*.
gi 1446207991 616 ERALKHFKQNNIEITGAILNG-IDEKSDDYSYVYQY 650
Cdd:PRK09841  682 SLSMQRLEQAGVNIKGAILNGvIKRASTAYSYGYNY 717
eps_transp_fam TIGR01005
exopolysaccharide transport protein family; The model describes the exopolysaccharide ...
 2-650 1.88e-90

exopolysaccharide transport protein family; The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]


Pssm-ID: 273391 [Multi-domain]  Cd Length: 764  Bit Score: 297.02  E-value: 1.88e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991   2 YCWFASPIYQANATLQYDKvNQASLLEKMNDGMLFGGNNGQIDSEIEIIKSRMVLGKTVSDLNLDI-------QILPSKI 74
Cdd:TIGR01005  34 YAFFARPVYEADIMILLDD-NLNKAAEEEGDPSNLFDLDTDAAAAIEILKSGELAGKAVDKLHLSEnakilnpPRFPVDL 112

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991  75 FSKFLSDAAI-------------------VHIAEYQLPPNLIGQPATLTFLNDRQYTL------AFADQIYHGQIGTMLK 129
Cdd:TIGR01005 113 IGAWIKSAAGlfsepggfdlgeeaagnerIDKAAADIPEALAGEPFKLISLGAGAFRLedkllaAPIAGGVAEALEADQL 192

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 130 QGEIHLLIDSYIAQGGEKLTLVKKDRYSAIENLRHRLSMNEASKGSGIINLI-VKGTNQRENIEILDNVIQNYINQNRAH 208
Cdd:TIGR01005 193 IANFEAQENALTAKAEALFDLEQDSQAAALEMAHDKAEIAEKAAQGEIIGEAqLADLNPALIAAIADQAAAEARADNIKR 272

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 209 RKQATNNTLIFLDNYIPKVKNKLDHYENQLNTFRKQNESIDLTLEAKSALESALHIEEKLNELTFKEVELQQRYTRSHPT 288
Cdd:TIGR01005 273 IADEAEENAVFLAGILPKEGDELEIADLKTNELRNGKGEFDLSDEFGADHPEAVCSAPSLQELKAKIAEELQQFTASHKG 352

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 289 YQSLLDKRQKLLLEK-EKASKNIQQLPNTQQQIIRLTRDVESEQAIYNQLVTKQRELSVLNSGITADVRIIDSAESYPVA 367
Cdd:TIGR01005 353 EQAIAQQIEESLRGKiNGIAGKLKDAPEIEQDLRELEQDAAADKELYESLLGDMEQAKLQKAFKIAKARLIDEAAVPEEP 432

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 368 IAPKKSLIMMLASLLGLVMGCAFVIGKELLNNKIKSTEDLEA-LDLRVYATVPFS------------------------L 422
Cdd:TIGR01005 433 SKPKKLMTLALAAVLGMMLGGAAAAFLEALEGGFRDEGDIEEhLGHRSLATVPLLdtqmdkkaqlthahfgsvkrhdeaV 512

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 423 DEKKSRYRESKKplSIENPADMAIESIRSLRTSVYFSVMNQDNNIVMVTSASPNVGKSFITANMAVVLANAGKKILLIDT 502
Cdd:TIGR01005 513 DDTMPFQLLARI--VPDAPRSTFAEAFRNAKLACDFALADAENNLIAIAGALPDEGKSFIAANFAALIAAGGKRTLLIDA 590

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 503 DLRKGHIHKTFGLDNKSGLSEFLSqhGGDSISK--HQQVIENLDIISRGKSTT---HSSELLMSEQFKHLLDSVKHQYDM 577
Cdd:TIGR01005 591 DIRKGGLHQMFGKAPKPGLLDLLA--GEASIEAgiHRDQRPGLAFIAAGGASHfphNPNELLANPAMAELIDNARNAFDL 668

                         650       660       670       680       690       700       710
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1446207991 578 VLLDTAPIFAITDPAIIGKYAGTSLLVAYYGVNTVKEIERALKHFKQNNIEITGAILNGIDEKS-DDYSYVYQY 650
Cdd:TIGR01005 669 VLVDLAALAAVADAAAFAALADGILFVTEFERSPLGEIRDLIHQEPHANSDVLGVIFNALDMNElGKYGDFDGA 742
BY-kinase cd05387
bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on ...
 447-636 3.16e-64

bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.


Pssm-ID: 349772 [Multi-domain]  Cd Length: 190  Bit Score: 210.12  E-value: 3.16e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 447 ESIRSLRTSVYFSVMNQDNNIVMVTSASPNVGKSFITANMAVVLANAGKKILLIDTDLRKGHIHKTFGLDNKSGLSEFLS 526
Cdd:cd05387     1 EAFRTLRTNLLFAGSDAGPKVIAVTSASPGEGKSTVAANLAVALAQSGKRVLLIDADLRRPSLHRLLGLPNEPGLSEVLS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 527 qhGGDSISK--HQQVIENLDIISRGKSTTHSSELLMSEQFKHLLDSVKHQYDMVLLDTAPIFAITDPAIIGKYAGTSLLV 604
Cdd:cd05387    81 --GQASLEDviQSTNIPNLDVLPAGTVPPNPSELLSSPRFAELLEELKEQYDYVIIDTPPVLAVADALILAPLVDGVLLV 158

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1446207991 605 AYYGVNTVKEIERALKHFKQNNIEITGAILNG 636
Cdd:cd05387   159 VRAGKTRRREVKEALERLEQAGAKVLGVVLNK 190
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
2-650 6.83e-64

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 223.74  E-value: 6.83e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991   2 YCWFASPIYQANATLQYDKVNQASLLEKMNDgmlFGGNNGQIDSEIEIIKSRMVLGKTVSDLNLDIQILPSKifskflsd 81
Cdd:COG3206    45 YALLLPPVYEASATLLVEPQSSDVLLSGLSS---LSASDSPLETQIEILKSRPVLERVVDKLNLDEDPLGEE-------- 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991  82 aaivhiaeyqlppnligqpatltflndrqytlafadqiyhgqigtmlkqgeihllidsyiaqggekltlvkKDRYSAIEN 161
Cdd:COG3206   114 -----------------------------------------------------------------------ASREAAIER 122

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 162 LRHRLSMnEASKGSGIINLIVKGTNQRENIEILDNVIQNYINQNRAHRKQATNNTLIFLDNYIPKVKNKLDHYENQLNTF 241
Cdd:COG3206   123 LRKNLTV-EPVKGSNVIEISYTSPDPELAAAVANALAEAYLEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEF 201

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 242 RKQNESIDLTLEAK------SALESALH--------------------------------------IEEKLNELTFKEVE 277
Cdd:COG3206   202 RQKNGLVDLSEEAKlllqqlSELESQLAearaelaeaearlaalraqlgsgpdalpellqspviqqLRAQLAELEAELAE 281

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 278 LQQRYTRSHPTYQSLLDKRQKLL---------------------------LEKEKAS--KNIQQLPNTQQQIIRLTRDVE 328
Cdd:COG3206   282 LSARYTPNHPDVIALRAQIAALRaqlqqeaqrilasleaelealqareasLQAQLAQleARLAELPELEAELRRLEREVE 361

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 329 SEQAIYNQLVTKQRELSVLNSGITADVRIIDSAESYPVAIAPKKSLIMMLASLLGLVMGCAFVIGKELLNNKIKSTEDLE 408
Cdd:COG3206   362 VARELYESLLQRLEEARLAEALTVGNVRVIDPAVVPLKPVSPKKLLILALGLLLGLLLGLGLALLLELLDRTIEEELELL 441

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 409 ALDLRVYATVPFSLDEKKSRYRESKKPLSI--ENPADMAIESIRSLRTSVYFSVMNQDNNIVMVTSASPNVGKSFITANM 486
Cdd:COG3206   442 LLLGLPLLGPLPPLKSKRERRRARLALLLLaaALAALLALLLALLLLLLLLLLLLLVSSSSGGGSSSTSSALAAASAAAA 521

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 487 AVVLANAGKKILLIDTDLRKGHIHKTFGLDNKSGLSEFLSQHGGDSISKHQQVIENLDIISRGKSTTHSSELLMSEQFKH 566
Cdd:COG3206   522 AAAALLLLLLLLLLLDLLLLLLLLLLLLLLLLGGLLLLLLLLLLLLLLLLLLLLLLLLLLPPPLLLPLLLLLLLLLLLLL 601

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 567 LLDSVKHQYDMVLLDTAPIFAITDPAIIGKYAGTSLLVAYYGVNTVKEIERALKHFKQNNIEITGAILNGIDEKSDDYSY 646
Cdd:COG3206   602 LLLLLLLSDDLILDLVPLLAALLAAAVLAVLVVVLLLVVALVALARLALLAAALLLLLVLVVVGGVVLGGVVYGYYYYYY 681


                  ....
gi 1446207991 647 VYQY 650
Cdd:COG3206   682 YYYY 685
Mrp COG0489
Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family [Cell cycle control, cell division, ...
 467-650 1.20e-56

Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440255 [Multi-domain]  Cd Length: 289  Bit Score: 193.48  E-value: 1.20e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 467 IVMVTSASPNVGKSFITANMAVVLANAGKKILLIDTDLRKGHIHKTFGLDNKSGLSEFLSQHGGDSISKHQQVIENLDII 546
Cdd:COG0489    94 VIAVTSGKGGEGKSTVAANLALALAQSGKRVLLIDADLRGPSLHRMLGLENRPGLSDVLAGEASLEDVIQPTEVEGLDVL 173

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 547 SRGKSTTHSSELLMSEQFKHLLDSVKHQYDMVLLDTAPIFAITDPAIIGKYAGTSLLVAYYGVNTVKEIERALKHFKQNN 626
Cdd:COG0489   174 PAGPLPPNPSELLASKRLKQLLEELRGRYDYVIIDTPPGLGVADATLLASLVDGVLLVVRPGKTALDDVRKALEMLEKAG 253

                         170       180
                  ....*....|....*....|....*....
gi 1446207991 627 IEITGAILNGIDEKSDDY-----SYVYQY 650
Cdd:COG0489   254 VPVLGVVLNMVCPKGERYygggeEYGYRE 282
eps_fam TIGR01007
capsular exopolysaccharide family; This model describes the capsular exopolysaccharide ...
 447-650 7.02e-42

capsular exopolysaccharide family; This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]


Pssm-ID: 273392 [Multi-domain]  Cd Length: 204  Bit Score: 150.67  E-value: 7.02e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 447 ESIRSLRTSVYFSvmNQDNNIVMVTSASPNVGKSFITANMAVVLANAGKKILLIDTDLRKGHIHKTFGLDNK-SGLSEFL 525
Cdd:TIGR01007   1 EYYNAIRTNIQFS--GAEIKVLLITSVKPGEGKSTTSANIAIAFAQAGYKTLLIDGDMRNSVMSGTFKSQNKiTGLTNFL 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 526 SQHGGDSISKHQQVIENLDIISRGKSTTHSSELLMSEQFKHLLDSVKHQYDMVLLDTAPIFAITDPAIIGKYAGTSLLVA 605
Cdd:TIGR01007  79 SGTTDLSDAICDTNIENLDVITAGPVPPNPTELLQSSNFKTLIETLRKRFDYIIIDTPPIGTVTDAAIIARACDASILVT 158

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1446207991 606 YYGVNTVKEIERALKHFKQNNIEITGAILNGIDEKSDDYSYVYQY 650
Cdd:TIGR01007 159 DAGKIKKREVKKAKEQLEQAGSNFLGVVLNKVDISVSKYGYYGYY 203
GNVR pfam13807
G-rich domain on putative tyrosine kinase; This domain is found between two families, Wzz, ...
 315-396 2.39e-25

G-rich domain on putative tyrosine kinase; This domain is found between two families, Wzz, pfam02706 and CbiA pfam01656. There is a highly conserved GNVR sequence motif which characterizes this domain. The function is not known.


Pssm-ID: 433492 [Multi-domain]  Cd Length: 82  Bit Score: 99.98  E-value: 2.39e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 315 NTQQQIIRLTRDVESEQAIYNQLVTKQRELSVLNSGITADVRIIDSAESYPVAIAPKKSLIMMLASLLGLVMGCAFVIGK 394
Cdd:pfam13807   1 DTQQEILRLTRDVEVNTEIYTQLLNSNQELEVVKAGTVGNVRIVDTAVVPPKPVKPKKALIVVLALLLGLMLGVGLVLLR 80


                  ..
gi 1446207991 395 EL 396
Cdd:pfam13807  81 RA 82
YveK COG3944
Capsular polysaccharide biosynthesis protein YveK [Cell wall/membrane/envelope biogenesis];
309-520 7.08e-15

Capsular polysaccharide biosynthesis protein YveK [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443144 [Multi-domain]  Cd Length: 309  Bit Score: 75.87  E-value: 7.08e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 309 NIQQLPNTQqqIIRLTrdVESE---------QAIYNQLVTKQRELSVlnsgiTADVRIIDSAESYPVAIAPKKSLIMMLA 379
Cdd:COG3944   104 SVTSPPDTQ--VITIT--VTDTdperaadiaNAVAEVFAEEVKELMK-----VDNVTVLDPATVPASPVSPNPKLNLAIG 174

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 380 SLLGLVMGCAFVIGKELLNNKIKSTEDLEA-LDLRVyatvpfsLDEKKSRYRESKKPLSIENPADMAIESIRSLRTSVYF 458
Cdd:COG3944   175 LVLGLLLGVGLAFLRELLDTTIRSEEDIERlLGLLL-------GGAVPAARSARPLLLLLADASPRAAAARRRRRNLLFA 247

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1446207991 459 SVMNQDNNIVMVTSASPNVGKSFITANMAVVLANAGKKILLIDTDLRKGHIHKTFGLDNKSG 520
Cdd:COG3944   248 LAAVDARTVVVVSSSLSEGKSTTTAALALALAAAAAGVVLVLADLDRRRRVALLGLLEGAGL 309
FlhG COG0455
MinD-like ATPase FlhG/YlxH, activator of the FlhF-type GTPase [Cell cycle control, cell ...
 481-593 1.03e-14

MinD-like ATPase FlhG/YlxH, activator of the FlhF-type GTPase [Cell cycle control, cell division, chromosome partitioning, Cell motility];


Pssm-ID: 440223 [Multi-domain]  Cd Length: 230  Bit Score: 73.77  E-value: 1.03e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 481 FITANMAVVLANAGKKILLIDTDLRKGHIHKTFGLDNKSGLSEFLSqhGGDSISKH-QQVIENLDIISRGKSTTHSSELL 559
Cdd:COG0455     1 TVAVNLAAALARLGKRVLLVDADLGLANLDVLLGLEPKATLADVLA--GEADLEDAiVQGPGGLDVLPGGSGPAELAELD 78

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1446207991 560 MSEQFKHLLDSVKHQYDMVLLDTAPifAITDPAI 593
Cdd:COG0455    79 PEERLIRVLEELERFYDVVLVDTGA--GISDSVL 110
CpaE COG4963
Flp pilus assembly ATPase CpaE/TadZ, contains N-terminal REC/TadZ_N domain [Intracellular ...
 467-586 9.19e-14

Flp pilus assembly ATPase CpaE/TadZ, contains N-terminal REC/TadZ_N domain [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 443989 [Multi-domain]  Cd Length: 358  Bit Score: 73.22  E-value: 9.19e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 467 IVMVTSASPNVGKSFITANMAVVLA-NAGKKILLIDTDLRKGHIHKTFGLDNKSGLSEFLSQHG-------GDSISKHQq 538
Cdd:COG4963   104 VIAVVGAKGGVGATTLAVNLAWALArESGRRVLLVDLDLQFGDVALYLDLEPRRGLADALRNPDrldetllDRALTRHS- 182

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1446207991 539 viENLDIISrGKSTTHSSELLMSEQFKHLLDSVKHQYDMVLLDTAPIF 586
Cdd:COG4963   183 --SGLSVLA-APADLERAEEVSPEAVERLLDLLRRHFDYVVVDLPRGL 227
ParA COG1192
ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein ...
 477-649 4.13e-13

ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ [Cell cycle control, cell division, chromosome partitioning, Cell motility];


Pssm-ID: 440805 [Multi-domain]  Cd Length: 253  Bit Score: 69.50  E-value: 4.13e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 477 VGKSFITANMAVVLANAGKKILLIDTDLRkGHIHKTFGLDNKS---GLSEFL--SQHGGDSISKHQqvIENLDIIS---- 547
Cdd:COG1192    13 VGKTTTAVNLAAALARRGKRVLLIDLDPQ-GNLTSGLGLDPDDldpTLYDLLldDAPLEDAIVPTE--IPGLDLIPanid 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 548 -RGKSTTHSSELLMSEQFKHLLDSVKHQYDMVLLDTAPIF-AITDPAIIgkyAGTSLLV-------AYYGV----NTVKE 614
Cdd:COG1192    90 lAGAEIELVSRPGRELRLKRALAPLADDYDYILIDCPPSLgLLTLNALA---AADSVLIpvqpeylSLEGLaqllETIEE 166

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1446207991 615 IERALKHfkqnNIEITGAILNGIDEKSDDYSYVYQ 649
Cdd:COG1192   167 VREDLNP----KLEILGILLTMVDPRTRLSREVLE 197
FlhG-like cd02038
MinD-like ATPase FlhG; FlhG is a member of the SIMIBI superfamily. FlhG (also known as YlxH) ...
 466-584 8.87e-13

MinD-like ATPase FlhG; FlhG is a member of the SIMIBI superfamily. FlhG (also known as YlxH) is a major determinant for a variety of flagellation patterns. It effects location and number of bacterial flagella during C-ring assembly.


Pssm-ID: 349758 [Multi-domain]  Cd Length: 230  Bit Score: 68.36  E-value: 8.87e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 466 NIVMVTSASPNVGKSFITANMAVVLANAGKKILLIDTDLRKGHIHKTFGLDNKSGLSEFLSqhggDSISKHQQVIE---N 542
Cdd:cd02038     1 RIIAVTSGKGGVGKTNVSANLALALSKLGKRVLLLDADLGLANLDILLGLAPKKTLGDVLK----GRVSLEDIIVEgpeG 76

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1446207991 543 LDIISrGKSTTHSSELLMSEQFKHLLDSVKH---QYDMVLLDTAP 584
Cdd:cd02038    77 LDIIP-GGSGMEELANLDPEQKAKLIEELSSlesNYDYLLIDTGA 120
CbiA pfam01656
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid ...
 468-635 1.79e-12

CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyze amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.


Pssm-ID: 426369 [Multi-domain]  Cd Length: 228  Bit Score: 67.37  E-value: 1.79e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 468 VMVTSASPNVGKSFITANMAVVLANAGKKILLIDTD-------LRKGHIHKTFGLDNKSGLSEfLSQHGGDSISKHQQVI 540
Cdd:pfam01656   1 IAIAGTKGGVGKTTLAANLARALARRGLRVLLIDLDpqsnnssVEGLEGDIAPALQALAEGLK-GRVNLDPILLKEKSDE 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 541 ENLDIISRGKSTTHSSELLMSEQFKH----LLDSVKHQYDMVLLDTAPifAITDPAIIGKYAGTSLLVA----YYGVNTV 612
Cdd:pfam01656  80 GGLDLIPGNIDLEKFEKELLGPRKEErlreALEALKEDYDYVIIDGAP--GLGELLRNALIAADYVIIPlepeVILVEDA 157

                         170       180
                  ....*....|....*....|....*..
gi 1446207991 613 KEIERALKHFKQNN----IEITGAILN 635
Cdd:pfam01656 158 KRLGGVIAALVGGYallgLKIIGVVLN 184
MinD cd02036
septum site-determining protein MinD; Septum site-determining protein MinD is part of the ...
 466-581 2.64e-09

septum site-determining protein MinD; Septum site-determining protein MinD is part of the operon MinCDE that determines the site of the formation of a septum at mid-cell, an important part of bacterial cell division. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein.


Pssm-ID: 349756 [Multi-domain]  Cd Length: 236  Bit Score: 57.98  E-value: 2.64e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 466 NIVMVTSASPNVGKSFITANMAVVLANAGKKILLIDTD--LRKGHIHktFGLDNKS--GLSEFLSQHG--GDSISKHQQV 539
Cdd:cd02036     1 RVIVITSGKGGVGKTTTTANLGVALAKLGKKVLLIDADigLRNLDLI--LGLENRIvyTLVDVLEGECrlEQALIKDKRW 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1446207991 540 iENLDIISRGKSTTHSSelLMSEQFKHLLDSVKHQYDMVLLD 581
Cdd:cd02036    79 -ENLYLLPASQTRDKDA--LTPEKLEELVKELKDSFDFILID 117
AAA_31 pfam13614
AAA domain; This family includes a wide variety of AAA domains including some that have lost ...
 477-584 3.67e-07

AAA domain; This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.


Pssm-ID: 433350 [Multi-domain]  Cd Length: 177  Bit Score: 50.66  E-value: 3.67e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 477 VGKSFITANMAVVLANAGKKILLIDTDlrkGHIHKTFGLDNKSGLSEFLSQH---GGDSISK--HQQVIENLDIISRGKS 551
Cdd:pfam13614  13 VGKTTTSVNLAAALAKKGKKVLLIDLD---PQGNATSGLGIDKNNVEKTIYElliGECNIEEaiIKTVIENLDLIPSNID 89

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1446207991 552 TTHSSELLMSEQ-----FKHLLDSVKHQYDMVLLDTAP 584
Cdd:pfam13614  90 LAGAEIELIGIEnreniLKEALEPVKDNYDYIIIDCPP 127
Mrp_NBP35 cd02037
Mrp/NBP35 ATP-binding protein family; Mrp/NBP35 ATP-binding family protein are typically ...
 466-519 1.46e-06

Mrp/NBP35 ATP-binding protein family; Mrp/NBP35 ATP-binding family protein are typically iron-sulfur (FeS) cluster scaffolds that function to assemble nascent FeS clusters for transfer to FeS-requiring enzymes. Members include the eukaryotic nucleotide-binding protein 1 (NUBP1) which is a component of the cytosolic iron-sulfur (Fe/S) protein assembly (CIA) machinery and the archael [NiFe] hydrogenase maturation protein HypB which is required for nickel insertion into [NiFe] hydrogenase.


Pssm-ID: 349757 [Multi-domain]  Cd Length: 213  Bit Score: 49.42  E-value: 1.46e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1446207991 466 NIVMVTSASPNVGKSFITANMAVVLANAGKKILLIDTDLRKGHIHKTFGLDNKS 519
Cdd:cd02037     1 HIIAVLSGKGGVGKSTVAVNLALALAKKGYKVGLLDADIYGPSIPRLLGVEGKP 54
CpaE-like cd03111
pilus assembly ATPase CpaE; This protein family consists of proteins similar to the cpaE ...
 467-642 1.71e-06

pilus assembly ATPase CpaE; This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.


Pssm-ID: 349765 [Multi-domain]  Cd Length: 235  Bit Score: 49.58  E-value: 1.71e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 467 IVMVTSASPNVGKSFITANMAVVLAN-AGKKILLIDTDLRKGHIHKTFGLDNKSGLSEFLsqhggdsiskhqQVIENLDI 545
Cdd:cd03111     2 VVAVVGAKGGVGASTLAVNLAQELAQrAKDKVLLIDLDLPFGDLGLYLNLRPDYDLADVI------------QNLDRLDR 69

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 546 IS-RGKSTTHSSEL--------------LMSEQFKHLLDSVKHQYDMVLLDTAPIF-AITDPAIIGkyAGTSLLVAYYGV 609
Cdd:cd03111    70 TLlDSAVTRHSSGLsllpapqeledleaLGAEQVDKLLQVLRAFYDHIIVDLGHFLdEVTLAVLEA--ADEILLVTQQDL 147

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1446207991 610 NTVKEIERALKHFKQ-----NNIEItgaILNGIDEKSD 642
Cdd:cd03111   148 PSLRNARRLLDSLRElegssDRLRL---VLNRYDKKSE 182
SIMIBI cd01983
SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal ...
 466-503 5.66e-06

SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal recognition particle, MinD, and BioD), consists of signal recognition particle (SRP) GTPases, the assemblage of MinD-like ATPases, which are involved in protein localization, chromosome partitioning, and membrane transport, and a group of metabolic enzymes with kinase or related phosphate transferase activity. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.


Pssm-ID: 349751 [Multi-domain]  Cd Length: 107  Bit Score: 45.50  E-value: 5.66e-06
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1446207991 466 NIVMVTSASPNVGKSFITANMAVVLANAGKKILLIDTD 503
Cdd:cd01983     1 RVIAVTGGKGGVGKTTLAAALAVALAAKGYKVLLIDLD 38
ParA pfam10609
NUBPL iron-transfer P-loop NTPase; This family contains ATPases involved in plasmid ...
 466-519 1.17e-05

NUBPL iron-transfer P-loop NTPase; This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.


Pssm-ID: 431392 [Multi-domain]  Cd Length: 246  Bit Score: 47.06  E-value: 1.17e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1446207991 466 NIVMVTSASPNVGKSFITANMAVVLANAGKKILLIDTDLRkGH-IHKTFGLDNKS 519
Cdd:pfam10609   4 HVIAVASGKGGVGKSTVAVNLALALARLGYKVGLLDADIY-GPsIPRMLGLEGER 57
ParAB_family cd02042
partition proteins ParAB family; ParA and ParB of Caulobacter crescentus belong to a conserved ...
 477-503 1.80e-05

partition proteins ParAB family; ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.


Pssm-ID: 349760 [Multi-domain]  Cd Length: 130  Bit Score: 44.45  E-value: 1.80e-05
                          10        20
                  ....*....|....*....|....*..
gi 1446207991 477 VGKSFITANMAVVLANAGKKILLIDTD 503
Cdd:cd02042    12 VGKTTLAVNLAAALALRGKRVLLIDLD 38
WzzB COG3765
LPS O-antigen chain length determinant protein, WzzB/FepE family [Cell wall/membrane/envelope ...
 219-397 2.05e-05

LPS O-antigen chain length determinant protein, WzzB/FepE family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442979 [Multi-domain]  Cd Length: 364  Bit Score: 47.27  E-value: 2.05e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 219 FLDNYIPKVKNK-LDHYENQL--------NTFRKQNESIDLTLEAK-----SALESALHIEEKLNeltfkevelQQRYTR 284
Cdd:COG3765   179 LLRGYIDFANQRvLKELNEELqgaiaarlQSLKAQIKRLEEVAKAQrqrriERLKYALKIAQAAG---------IKKPVY 249

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 285 SHPTYQSLLDKRQKLLLekeKASKNIQQlpntQQQIIRLTRDVESEQAIYNQLvtkQRELSVLNSGITADVRI----IDS 360
Cdd:COG3765   250 SNGQTPAVKLDPSYLFL---LGTDALQA----ELEILKARGDDYPLNADLYQL---QAQLAQLNALPIDDVGFqpfrYLR 319

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1446207991 361 AESYPVA-IAPKKSLIMMLASLLGLVMGCAFVIGKELL 397
Cdd:COG3765   320 TPEEPVKkDKPKRALILVLGALLGGMLGVGVVLIRHAL 357
PRK10818 PRK10818
septum site-determining protein MinD;
467-619 3.69e-04

septum site-determining protein MinD;


Pssm-ID: 182756 [Multi-domain]  Cd Length: 270  Bit Score: 43.00  E-value: 3.69e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 467 IVMVTSASPNVGKSFITANMAVVLANAGKKILLIDTDLRKGHIHKTFGLDNKSgLSEFLSQHGGDSiSKHQQVI-----E 541
Cdd:PRK10818    4 IIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRV-VYDFVNVIQGDA-TLNQALIkdkrtE 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 542 NLDIISrgKSTTHSSELLMSEQFKHLLDSVKHQ-YDMVLLDTAPifAITDPAIIGKY-AGTSLLVAYYGVNTVKEIERAL 619
Cdd:PRK10818   82 NLYILP--ASQTRDKDALTREGVAKVLDDLKAMdFEFIVCDSPA--GIETGALMALYfADEAIITTNPEVSSVRDSDRIL 157
minD CHL00175
septum-site determining protein; Validated
 462-581 8.59e-04

septum-site determining protein; Validated


Pssm-ID: 214385 [Multi-domain]  Cd Length: 281  Bit Score: 41.68  E-value: 8.59e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 462 NQDNNIVMVTSASPNVGKSFITANMAVVLANAGKKILLIDTDLRKGHIHKTFGLDNK---SGLSEFLSQHGGDSISKHQQ 538
Cdd:CHL00175   12 ATMSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLDLLLGLENRvlyTAMDVLEGECRLDQALIRDK 91

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1446207991 539 VIENLDIISRGKSTTHSSelLMSEQFKHLLDSVKHQ-YDMVLLD 581
Cdd:CHL00175   92 RWKNLSLLAISKNRQRYN--VTRKNMNMLVDSLKNRgYDYILID 133
Wzz pfam02706
Chain length determinant protein; This family includes proteins involved in lipopolysaccharide ...
 2-62 1.69e-03

Chain length determinant protein; This family includes proteins involved in lipopolysaccharide (lps) biosynthesis. This family comprises the whole length of chain length determinant protein (or wzz protein) that confers a modal distribution of chain length on the O-antigen component of lps. This region is also found as part of bacterial tyrosine kinases.


Pssm-ID: 460658 [Multi-domain]  Cd Length: 90  Bit Score: 38.04  E-value: 1.69e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1446207991   2 YCWFASPIYQANATLQYDKVNQASLLEKMNDGMlfgGNNGQIDSEIEIIKSRMVLGKTVSD 62
Cdd:pfam02706  33 YAFLATPKYTATAQILVPQKKGEAGSLLGSDLQ---AGLQLASTEIEILKSRDVLEKVIDE 90
PRK12704 PRK12704
phosphodiesterase; Provisional
 252-363 2.14e-03

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 40.92  E-value: 2.14e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 252 LEAKSALESalHIEEKLNELTFKEVELQQRytrshptyQSLLDKRQKLLLEKEkaskniQQLPNTQQQIIRLTRDVESEQ 331
Cdd:PRK12704   67 HKLRNEFEK--ELRERRNELQKLEKRLLQK--------EENLDRKLELLEKRE------EELEKKEKELEQKQQELEKKE 130

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1446207991 332 AIYNQLVTKQR-ELSVLnSGITAD---VRIIDSAES 363
Cdd:PRK12704  131 EELEELIEEQLqELERI-SGLTAEeakEILLEKVEE 165
ParA_partition NF041546
ParA family partition ATPase;
477-503 4.27e-03

ParA family partition ATPase;


Pssm-ID: 469431 [Multi-domain]  Cd Length: 202  Bit Score: 39.07  E-value: 4.27e-03
                          10        20
                  ....*....|....*....|....*..
gi 1446207991 477 VGKSFITANMAVVLANAGKKILLIDTD 503
Cdd:NF041546   11 VGKTTLATHLAAALARRGYRVLLVDAD 37
YveK COG3944
Capsular polysaccharide biosynthesis protein YveK [Cell wall/membrane/envelope biogenesis];
4-67 7.72e-03

Capsular polysaccharide biosynthesis protein YveK [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443144 [Multi-domain]  Cd Length: 309  Bit Score: 38.90  E-value: 7.72e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1446207991   4 WFASPIYQANATLQYDKVNQASLLEKMNDGMLfggNNGQIDSEIEIIKSRMVLGKTVSDLNLDI 67
Cdd:COG3944    34 FLITPVYQASTTLLVSTSSGSDASDLYQGIQT---AQQLVNTYAELLKSPAVLEEVIDELGLDL 94
CooC COG3640
CO dehydrogenase nickel-insertion accessory protein CooC1 [Posttranslational modification, ...
 477-582 7.84e-03

CO dehydrogenase nickel-insertion accessory protein CooC1 [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 442857 [Multi-domain]  Cd Length: 249  Bit Score: 38.61  E-value: 7.84e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 477 VGKSFITANMAVVLANAGKKILLIDTD----LrkghiHKTFGLDNKSGLSEFLSQH----------GGDSISK------- 535
Cdd:COG3640    11 VGKTTLSALLARYLAEKGKPVLAVDADpnanL-----AEALGLEVEADLIKPLGEMrelikertgaPGGGMFKlnpkvdd 85

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1446207991 536 --HQQVIE--NLDIISRGKSTT--------HSSelLMSEQFKHLLDSvkhQYDMVLLDT 582
Cdd:COG3640    86 ipEEYLVEgdGVDLLVMGTIEEggsgcycpENA--LLRALLNHLVLG---NYEYVVVDM 139
PRK11670 PRK11670
iron-sulfur cluster carrier protein ApbC;
466-504 7.89e-03

iron-sulfur cluster carrier protein ApbC;


Pssm-ID: 183270 [Multi-domain]  Cd Length: 369  Bit Score: 38.87  E-value: 7.89e-03
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1446207991 466 NIVMVTSASPNVGKSFITANMAVVLANAGKKILLIDTDL 504
Cdd:PRK11670  108 NIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADI 146
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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