|
Name |
Accession |
Description |
Interval |
E-value |
| PRK11519 |
PRK11519 |
tyrosine-protein kinase Wzc; |
1-650 |
0e+00 |
|
tyrosine-protein kinase Wzc;
Pssm-ID: 183173 [Multi-domain] Cd Length: 719 Bit Score: 584.04 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 1 MYCWFASPIYQANATLQYDKVNQASLLEKMNDGMLfgGNNGQIDSEIEIIKSRMVLGKTVSDLNLDIQILPS--KIFSKF 78
Cdd:PRK11519 47 VYTFFATPIYSADALVQIEQNSGNSLVQDIGSALA--NKPPASDAEIQLIRSRLVLGKTVDDLDLDIAVSKNtfPIFGAG 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 79 LS-----DAAIVHIAEYQLPPNLIGQPATLTFLNDRQYTLAFADQI-YHGQIGTMLKQGEIHLLIDSYIAQGGEKLTLVK 152
Cdd:PRK11519 125 WDrlmgrQNETVKVTTFNRPKEMADQVFTLNVLDDKNYQLSSDGGFsARGQVGQMLKKDGVTLMVEAIHARPGTEFTVTK 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 153 KDRYSAIENLRHRLSMNEASKGSGIINLIVKGTNQRENIEILDNVIQNYINQNRAHRKQATNNTLIFLDNYIPKVKNKLD 232
Cdd:PRK11519 205 YSTLGMINNLQNNLTVTENGKDTGVLSLTYTGEDREQIRDILNSITRNYLEQNIERKSEEASKSLAFLAQQLPEVRSRLD 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 233 HYENQLNTFRKQNESIDLTLEAKSALESALHIEEKLNELTFKEVELQQRYTRSHPTYQSLLDKRQKLLLEKEKASKNIQQ 312
Cdd:PRK11519 285 VAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLYTKEHPAYRTLLEKRKALEDEKAKLNGRVTA 364
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 313 LPNTQQQIIRLTRDVESEQAIYNQLVTKQRELSVLNSGITADVRIIDSAESYPVAIAPKKSLIMMLASLLGLVMGCAFVI 392
Cdd:PRK11519 365 MPKTQQEIVRLTRDVESGQQVYMQLLNKQQELKITEASTVGDVRIVDPAITQPGVLKPKKALIILGAIILGLMLSIVGVL 444
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 393 GKELLNNKIKSTEDLEALDLRVYATVPFS----------LDEKKSRYRESKKpLSIENPADMAIESIRSLRTSVYFSVMN 462
Cdd:PRK11519 445 LRSLFNRGIESPQVLEEHGISVYASIPLSewqkardsvkTIKGIKRYKQSQL-LAVGNPTDLAIEAIRSLRTSLHFAMMQ 523
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 463 QDNNIVMVTSASPNVGKSFITANMAVVLANAGKKILLIDTDLRKGHIHKTFGLDNKSGLSEFLSQHGGDSISKHQQVIEN 542
Cdd:PRK11519 524 AQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSIAN 603
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 543 LDIISRGKSTTHSSELLMSEQFKHLLDSVKHQYDMVLLDTAPIFAITDPAIIGKYAGTSLLVAYYGVNTVKEIERALKHF 622
Cdd:PRK11519 604 FDLIPRGQVPPNPSELLMSERFAELVNWASKNYDLVLIDTPPILAVTDAAIVGRHVGTTLMVARYAVNTLKEVETSLSRF 683
|
650 660 670
....*....|....*....|....*....|..
gi 1446207991 623 KQNNIEITGAILNGIDEKSDDYS----YVYQY 650
Cdd:PRK11519 684 EQNGIPVKGVILNSIFRRASAYQdygyYEYEY 715
|
|
| PRK09841 |
PRK09841 |
tyrosine-protein kinase; |
1-650 |
6.53e-169 |
|
tyrosine-protein kinase;
Pssm-ID: 182106 [Multi-domain] Cd Length: 726 Bit Score: 499.82 E-value: 6.53e-169
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 1 MYCWFASPIYQANATLQYDKVNQASLLEKMNDgmlFGGNNG-QIDSEIEIIKSRMVLGKTVSDLNLDIQILPS--KIFSK 77
Cdd:PRK09841 47 AYSLLSTPIYQADTLVQVEQKQGNAILSGLSD---MIPNSSpESAPEIQLLQSRMILGKTIAELNLRDIVEQKyfPIVGR 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 78 FLS-----DAAIVHIAEYQLPP-NLIGQPATLTFLNDRQYTLAFADQIYHGQIGTMLKQGEIHLLIDSYIAQGGEKLTLV 151
Cdd:PRK09841 124 GWArltkeKPGELAISWMHIPQlNGQDQQLTLTVGENGHYTLEGEEFTVNGMVGQRLEKDGVALTIADIKAKPGTQFVLS 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 152 KKDRYSAIENLRHRLSMNEASKGSGIINLIVKGTNQRENIEILDNVIQNYINQNRAHRKQATNNTLIFLDNYIPKVKNKL 231
Cdd:PRK09841 204 QRTELEAINALQETFTVSERSKESGMLELTMTGDDPQLITRILNSIANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSEL 283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 232 DHYENQLNTFRKQNESIDLTLEAKSALESALHIEEKLNELTFKEVELQQRYTRSHPTYQSLLDKRQKLLLEKEKASKNIQ 311
Cdd:PRK09841 284 DQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLYKKDHPTYRALLEKRQTLEQERKRLNKRVS 363
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 312 QLPNTQQQIIRLTRDVESEQAIYNQLVTKQRELSVLNSGITADVRIIDSAESYPVAIAPKKSLIMMLASLLGLVMGCAFV 391
Cdd:PRK09841 364 AMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELSISKSSAIGNVRIIDPAVTQPQPVKPKKALNVVLGFILGLFISVGAV 443
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 392 IGKELLNNKIKSTEDLEALDLRVYATVPFS--LDEK-----------KSRYRESKKP-LSIENPADMAIESIRSLRTSVY 457
Cdd:PRK09841 444 LARAMLRRGVEAPEQLEEHGISVYATIPMSewLDKRtrlrkknlfsnQQRHRTKNIPfLAVDNPADSAVEAVRALRTSLH 523
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 458 FSVMNQDNNIVMVTSASPNVGKSFITANMAVVLANAGKKILLIDTDLRKGHIHKTFGLDNKSGLSEFLSqhGGDSISKHQ 537
Cdd:PRK09841 524 FAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLA--GKDELNKVI 601
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 538 QVIE--NLDIISRGKSTTHSSELLMSEQFKHLLDSVKHQYDMVLLDTAPIFAITDPAIIGKYAGTSLLVAYYGVNTVKEI 615
Cdd:PRK09841 602 QHFGkgGFDVITRGQVPPNPSELLMRDRMRQLLEWANDHYDLVIVDTPPMLAVSDAAVVGRSVGTSLLVARFGLNTAKEV 681
|
650 660 670
....*....|....*....|....*....|....*.
gi 1446207991 616 ERALKHFKQNNIEITGAILNG-IDEKSDDYSYVYQY 650
Cdd:PRK09841 682 SLSMQRLEQAGVNIKGAILNGvIKRASTAYSYGYNY 717
|
|
| eps_transp_fam |
TIGR01005 |
exopolysaccharide transport protein family; The model describes the exopolysaccharide ... |
2-650 |
1.88e-90 |
|
exopolysaccharide transport protein family; The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273391 [Multi-domain] Cd Length: 764 Bit Score: 297.02 E-value: 1.88e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 2 YCWFASPIYQANATLQYDKvNQASLLEKMNDGMLFGGNNGQIDSEIEIIKSRMVLGKTVSDLNLDI-------QILPSKI 74
Cdd:TIGR01005 34 YAFFARPVYEADIMILLDD-NLNKAAEEEGDPSNLFDLDTDAAAAIEILKSGELAGKAVDKLHLSEnakilnpPRFPVDL 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 75 FSKFLSDAAI-------------------VHIAEYQLPPNLIGQPATLTFLNDRQYTL------AFADQIYHGQIGTMLK 129
Cdd:TIGR01005 113 IGAWIKSAAGlfsepggfdlgeeaagnerIDKAAADIPEALAGEPFKLISLGAGAFRLedkllaAPIAGGVAEALEADQL 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 130 QGEIHLLIDSYIAQGGEKLTLVKKDRYSAIENLRHRLSMNEASKGSGIINLI-VKGTNQRENIEILDNVIQNYINQNRAH 208
Cdd:TIGR01005 193 IANFEAQENALTAKAEALFDLEQDSQAAALEMAHDKAEIAEKAAQGEIIGEAqLADLNPALIAAIADQAAAEARADNIKR 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 209 RKQATNNTLIFLDNYIPKVKNKLDHYENQLNTFRKQNESIDLTLEAKSALESALHIEEKLNELTFKEVELQQRYTRSHPT 288
Cdd:TIGR01005 273 IADEAEENAVFLAGILPKEGDELEIADLKTNELRNGKGEFDLSDEFGADHPEAVCSAPSLQELKAKIAEELQQFTASHKG 352
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 289 YQSLLDKRQKLLLEK-EKASKNIQQLPNTQQQIIRLTRDVESEQAIYNQLVTKQRELSVLNSGITADVRIIDSAESYPVA 367
Cdd:TIGR01005 353 EQAIAQQIEESLRGKiNGIAGKLKDAPEIEQDLRELEQDAAADKELYESLLGDMEQAKLQKAFKIAKARLIDEAAVPEEP 432
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 368 IAPKKSLIMMLASLLGLVMGCAFVIGKELLNNKIKSTEDLEA-LDLRVYATVPFS------------------------L 422
Cdd:TIGR01005 433 SKPKKLMTLALAAVLGMMLGGAAAAFLEALEGGFRDEGDIEEhLGHRSLATVPLLdtqmdkkaqlthahfgsvkrhdeaV 512
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 423 DEKKSRYRESKKplSIENPADMAIESIRSLRTSVYFSVMNQDNNIVMVTSASPNVGKSFITANMAVVLANAGKKILLIDT 502
Cdd:TIGR01005 513 DDTMPFQLLARI--VPDAPRSTFAEAFRNAKLACDFALADAENNLIAIAGALPDEGKSFIAANFAALIAAGGKRTLLIDA 590
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 503 DLRKGHIHKTFGLDNKSGLSEFLSqhGGDSISK--HQQVIENLDIISRGKSTT---HSSELLMSEQFKHLLDSVKHQYDM 577
Cdd:TIGR01005 591 DIRKGGLHQMFGKAPKPGLLDLLA--GEASIEAgiHRDQRPGLAFIAAGGASHfphNPNELLANPAMAELIDNARNAFDL 668
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1446207991 578 VLLDTAPIFAITDPAIIGKYAGTSLLVAYYGVNTVKEIERALKHFKQNNIEITGAILNGIDEKS-DDYSYVYQY 650
Cdd:TIGR01005 669 VLVDLAALAAVADAAAFAALADGILFVTEFERSPLGEIRDLIHQEPHANSDVLGVIFNALDMNElGKYGDFDGA 742
|
|
| BY-kinase |
cd05387 |
bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on ... |
447-636 |
3.16e-64 |
|
bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.
Pssm-ID: 349772 [Multi-domain] Cd Length: 190 Bit Score: 210.12 E-value: 3.16e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 447 ESIRSLRTSVYFSVMNQDNNIVMVTSASPNVGKSFITANMAVVLANAGKKILLIDTDLRKGHIHKTFGLDNKSGLSEFLS 526
Cdd:cd05387 1 EAFRTLRTNLLFAGSDAGPKVIAVTSASPGEGKSTVAANLAVALAQSGKRVLLIDADLRRPSLHRLLGLPNEPGLSEVLS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 527 qhGGDSISK--HQQVIENLDIISRGKSTTHSSELLMSEQFKHLLDSVKHQYDMVLLDTAPIFAITDPAIIGKYAGTSLLV 604
Cdd:cd05387 81 --GQASLEDviQSTNIPNLDVLPAGTVPPNPSELLSSPRFAELLEELKEQYDYVIIDTPPVLAVADALILAPLVDGVLLV 158
|
170 180 190
....*....|....*....|....*....|..
gi 1446207991 605 AYYGVNTVKEIERALKHFKQNNIEITGAILNG 636
Cdd:cd05387 159 VRAGKTRRREVKEALERLEQAGAKVLGVVLNK 190
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
2-650 |
6.83e-64 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 223.74 E-value: 6.83e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 2 YCWFASPIYQANATLQYDKVNQASLLEKMNDgmlFGGNNGQIDSEIEIIKSRMVLGKTVSDLNLDIQILPSKifskflsd 81
Cdd:COG3206 45 YALLLPPVYEASATLLVEPQSSDVLLSGLSS---LSASDSPLETQIEILKSRPVLERVVDKLNLDEDPLGEE-------- 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 82 aaivhiaeyqlppnligqpatltflndrqytlafadqiyhgqigtmlkqgeihllidsyiaqggekltlvkKDRYSAIEN 161
Cdd:COG3206 114 -----------------------------------------------------------------------ASREAAIER 122
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 162 LRHRLSMnEASKGSGIINLIVKGTNQRENIEILDNVIQNYINQNRAHRKQATNNTLIFLDNYIPKVKNKLDHYENQLNTF 241
Cdd:COG3206 123 LRKNLTV-EPVKGSNVIEISYTSPDPELAAAVANALAEAYLEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEF 201
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 242 RKQNESIDLTLEAK------SALESALH--------------------------------------IEEKLNELTFKEVE 277
Cdd:COG3206 202 RQKNGLVDLSEEAKlllqqlSELESQLAearaelaeaearlaalraqlgsgpdalpellqspviqqLRAQLAELEAELAE 281
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 278 LQQRYTRSHPTYQSLLDKRQKLL---------------------------LEKEKAS--KNIQQLPNTQQQIIRLTRDVE 328
Cdd:COG3206 282 LSARYTPNHPDVIALRAQIAALRaqlqqeaqrilasleaelealqareasLQAQLAQleARLAELPELEAELRRLEREVE 361
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 329 SEQAIYNQLVTKQRELSVLNSGITADVRIIDSAESYPVAIAPKKSLIMMLASLLGLVMGCAFVIGKELLNNKIKSTEDLE 408
Cdd:COG3206 362 VARELYESLLQRLEEARLAEALTVGNVRVIDPAVVPLKPVSPKKLLILALGLLLGLLLGLGLALLLELLDRTIEEELELL 441
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 409 ALDLRVYATVPFSLDEKKSRYRESKKPLSI--ENPADMAIESIRSLRTSVYFSVMNQDNNIVMVTSASPNVGKSFITANM 486
Cdd:COG3206 442 LLLGLPLLGPLPPLKSKRERRRARLALLLLaaALAALLALLLALLLLLLLLLLLLLVSSSSGGGSSSTSSALAAASAAAA 521
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 487 AVVLANAGKKILLIDTDLRKGHIHKTFGLDNKSGLSEFLSQHGGDSISKHQQVIENLDIISRGKSTTHSSELLMSEQFKH 566
Cdd:COG3206 522 AAAALLLLLLLLLLLDLLLLLLLLLLLLLLLLGGLLLLLLLLLLLLLLLLLLLLLLLLLLPPPLLLPLLLLLLLLLLLLL 601
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 567 LLDSVKHQYDMVLLDTAPIFAITDPAIIGKYAGTSLLVAYYGVNTVKEIERALKHFKQNNIEITGAILNGIDEKSDDYSY 646
Cdd:COG3206 602 LLLLLLLSDDLILDLVPLLAALLAAAVLAVLVVVLLLVVALVALARLALLAAALLLLLVLVVVGGVVLGGVVYGYYYYYY 681
|
....
gi 1446207991 647 VYQY 650
Cdd:COG3206 682 YYYY 685
|
|
| Mrp |
COG0489 |
Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family [Cell cycle control, cell division, ... |
467-650 |
1.20e-56 |
|
Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440255 [Multi-domain] Cd Length: 289 Bit Score: 193.48 E-value: 1.20e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 467 IVMVTSASPNVGKSFITANMAVVLANAGKKILLIDTDLRKGHIHKTFGLDNKSGLSEFLSQHGGDSISKHQQVIENLDII 546
Cdd:COG0489 94 VIAVTSGKGGEGKSTVAANLALALAQSGKRVLLIDADLRGPSLHRMLGLENRPGLSDVLAGEASLEDVIQPTEVEGLDVL 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 547 SRGKSTTHSSELLMSEQFKHLLDSVKHQYDMVLLDTAPIFAITDPAIIGKYAGTSLLVAYYGVNTVKEIERALKHFKQNN 626
Cdd:COG0489 174 PAGPLPPNPSELLASKRLKQLLEELRGRYDYVIIDTPPGLGVADATLLASLVDGVLLVVRPGKTALDDVRKALEMLEKAG 253
|
170 180
....*....|....*....|....*....
gi 1446207991 627 IEITGAILNGIDEKSDDY-----SYVYQY 650
Cdd:COG0489 254 VPVLGVVLNMVCPKGERYygggeEYGYRE 282
|
|
| eps_fam |
TIGR01007 |
capsular exopolysaccharide family; This model describes the capsular exopolysaccharide ... |
447-650 |
7.02e-42 |
|
capsular exopolysaccharide family; This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273392 [Multi-domain] Cd Length: 204 Bit Score: 150.67 E-value: 7.02e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 447 ESIRSLRTSVYFSvmNQDNNIVMVTSASPNVGKSFITANMAVVLANAGKKILLIDTDLRKGHIHKTFGLDNK-SGLSEFL 525
Cdd:TIGR01007 1 EYYNAIRTNIQFS--GAEIKVLLITSVKPGEGKSTTSANIAIAFAQAGYKTLLIDGDMRNSVMSGTFKSQNKiTGLTNFL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 526 SQHGGDSISKHQQVIENLDIISRGKSTTHSSELLMSEQFKHLLDSVKHQYDMVLLDTAPIFAITDPAIIGKYAGTSLLVA 605
Cdd:TIGR01007 79 SGTTDLSDAICDTNIENLDVITAGPVPPNPTELLQSSNFKTLIETLRKRFDYIIIDTPPIGTVTDAAIIARACDASILVT 158
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1446207991 606 YYGVNTVKEIERALKHFKQNNIEITGAILNGIDEKSDDYSYVYQY 650
Cdd:TIGR01007 159 DAGKIKKREVKKAKEQLEQAGSNFLGVVLNKVDISVSKYGYYGYY 203
|
|
| GNVR |
pfam13807 |
G-rich domain on putative tyrosine kinase; This domain is found between two families, Wzz, ... |
315-396 |
2.39e-25 |
|
G-rich domain on putative tyrosine kinase; This domain is found between two families, Wzz, pfam02706 and CbiA pfam01656. There is a highly conserved GNVR sequence motif which characterizes this domain. The function is not known.
Pssm-ID: 433492 [Multi-domain] Cd Length: 82 Bit Score: 99.98 E-value: 2.39e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 315 NTQQQIIRLTRDVESEQAIYNQLVTKQRELSVLNSGITADVRIIDSAESYPVAIAPKKSLIMMLASLLGLVMGCAFVIGK 394
Cdd:pfam13807 1 DTQQEILRLTRDVEVNTEIYTQLLNSNQELEVVKAGTVGNVRIVDTAVVPPKPVKPKKALIVVLALLLGLMLGVGLVLLR 80
|
..
gi 1446207991 395 EL 396
Cdd:pfam13807 81 RA 82
|
|
| YveK |
COG3944 |
Capsular polysaccharide biosynthesis protein YveK [Cell wall/membrane/envelope biogenesis]; |
309-520 |
7.08e-15 |
|
Capsular polysaccharide biosynthesis protein YveK [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443144 [Multi-domain] Cd Length: 309 Bit Score: 75.87 E-value: 7.08e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 309 NIQQLPNTQqqIIRLTrdVESE---------QAIYNQLVTKQRELSVlnsgiTADVRIIDSAESYPVAIAPKKSLIMMLA 379
Cdd:COG3944 104 SVTSPPDTQ--VITIT--VTDTdperaadiaNAVAEVFAEEVKELMK-----VDNVTVLDPATVPASPVSPNPKLNLAIG 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 380 SLLGLVMGCAFVIGKELLNNKIKSTEDLEA-LDLRVyatvpfsLDEKKSRYRESKKPLSIENPADMAIESIRSLRTSVYF 458
Cdd:COG3944 175 LVLGLLLGVGLAFLRELLDTTIRSEEDIERlLGLLL-------GGAVPAARSARPLLLLLADASPRAAAARRRRRNLLFA 247
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1446207991 459 SVMNQDNNIVMVTSASPNVGKSFITANMAVVLANAGKKILLIDTDLRKGHIHKTFGLDNKSG 520
Cdd:COG3944 248 LAAVDARTVVVVSSSLSEGKSTTTAALALALAAAAAGVVLVLADLDRRRRVALLGLLEGAGL 309
|
|
| FlhG |
COG0455 |
MinD-like ATPase FlhG/YlxH, activator of the FlhF-type GTPase [Cell cycle control, cell ... |
481-593 |
1.03e-14 |
|
MinD-like ATPase FlhG/YlxH, activator of the FlhF-type GTPase [Cell cycle control, cell division, chromosome partitioning, Cell motility];
Pssm-ID: 440223 [Multi-domain] Cd Length: 230 Bit Score: 73.77 E-value: 1.03e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 481 FITANMAVVLANAGKKILLIDTDLRKGHIHKTFGLDNKSGLSEFLSqhGGDSISKH-QQVIENLDIISRGKSTTHSSELL 559
Cdd:COG0455 1 TVAVNLAAALARLGKRVLLVDADLGLANLDVLLGLEPKATLADVLA--GEADLEDAiVQGPGGLDVLPGGSGPAELAELD 78
|
90 100 110
....*....|....*....|....*....|....
gi 1446207991 560 MSEQFKHLLDSVKHQYDMVLLDTAPifAITDPAI 593
Cdd:COG0455 79 PEERLIRVLEELERFYDVVLVDTGA--GISDSVL 110
|
|
| CpaE |
COG4963 |
Flp pilus assembly ATPase CpaE/TadZ, contains N-terminal REC/TadZ_N domain [Intracellular ... |
467-586 |
9.19e-14 |
|
Flp pilus assembly ATPase CpaE/TadZ, contains N-terminal REC/TadZ_N domain [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 443989 [Multi-domain] Cd Length: 358 Bit Score: 73.22 E-value: 9.19e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 467 IVMVTSASPNVGKSFITANMAVVLA-NAGKKILLIDTDLRKGHIHKTFGLDNKSGLSEFLSQHG-------GDSISKHQq 538
Cdd:COG4963 104 VIAVVGAKGGVGATTLAVNLAWALArESGRRVLLVDLDLQFGDVALYLDLEPRRGLADALRNPDrldetllDRALTRHS- 182
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1446207991 539 viENLDIISrGKSTTHSSELLMSEQFKHLLDSVKHQYDMVLLDTAPIF 586
Cdd:COG4963 183 --SGLSVLA-APADLERAEEVSPEAVERLLDLLRRHFDYVVVDLPRGL 227
|
|
| ParA |
COG1192 |
ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein ... |
477-649 |
4.13e-13 |
|
ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ [Cell cycle control, cell division, chromosome partitioning, Cell motility];
Pssm-ID: 440805 [Multi-domain] Cd Length: 253 Bit Score: 69.50 E-value: 4.13e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 477 VGKSFITANMAVVLANAGKKILLIDTDLRkGHIHKTFGLDNKS---GLSEFL--SQHGGDSISKHQqvIENLDIIS---- 547
Cdd:COG1192 13 VGKTTTAVNLAAALARRGKRVLLIDLDPQ-GNLTSGLGLDPDDldpTLYDLLldDAPLEDAIVPTE--IPGLDLIPanid 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 548 -RGKSTTHSSELLMSEQFKHLLDSVKHQYDMVLLDTAPIF-AITDPAIIgkyAGTSLLV-------AYYGV----NTVKE 614
Cdd:COG1192 90 lAGAEIELVSRPGRELRLKRALAPLADDYDYILIDCPPSLgLLTLNALA---AADSVLIpvqpeylSLEGLaqllETIEE 166
|
170 180 190
....*....|....*....|....*....|....*
gi 1446207991 615 IERALKHfkqnNIEITGAILNGIDEKSDDYSYVYQ 649
Cdd:COG1192 167 VREDLNP----KLEILGILLTMVDPRTRLSREVLE 197
|
|
| FlhG-like |
cd02038 |
MinD-like ATPase FlhG; FlhG is a member of the SIMIBI superfamily. FlhG (also known as YlxH) ... |
466-584 |
8.87e-13 |
|
MinD-like ATPase FlhG; FlhG is a member of the SIMIBI superfamily. FlhG (also known as YlxH) is a major determinant for a variety of flagellation patterns. It effects location and number of bacterial flagella during C-ring assembly.
Pssm-ID: 349758 [Multi-domain] Cd Length: 230 Bit Score: 68.36 E-value: 8.87e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 466 NIVMVTSASPNVGKSFITANMAVVLANAGKKILLIDTDLRKGHIHKTFGLDNKSGLSEFLSqhggDSISKHQQVIE---N 542
Cdd:cd02038 1 RIIAVTSGKGGVGKTNVSANLALALSKLGKRVLLLDADLGLANLDILLGLAPKKTLGDVLK----GRVSLEDIIVEgpeG 76
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1446207991 543 LDIISrGKSTTHSSELLMSEQFKHLLDSVKH---QYDMVLLDTAP 584
Cdd:cd02038 77 LDIIP-GGSGMEELANLDPEQKAKLIEELSSlesNYDYLLIDTGA 120
|
|
| CbiA |
pfam01656 |
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid ... |
468-635 |
1.79e-12 |
|
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyze amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.
Pssm-ID: 426369 [Multi-domain] Cd Length: 228 Bit Score: 67.37 E-value: 1.79e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 468 VMVTSASPNVGKSFITANMAVVLANAGKKILLIDTD-------LRKGHIHKTFGLDNKSGLSEfLSQHGGDSISKHQQVI 540
Cdd:pfam01656 1 IAIAGTKGGVGKTTLAANLARALARRGLRVLLIDLDpqsnnssVEGLEGDIAPALQALAEGLK-GRVNLDPILLKEKSDE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 541 ENLDIISRGKSTTHSSELLMSEQFKH----LLDSVKHQYDMVLLDTAPifAITDPAIIGKYAGTSLLVA----YYGVNTV 612
Cdd:pfam01656 80 GGLDLIPGNIDLEKFEKELLGPRKEErlreALEALKEDYDYVIIDGAP--GLGELLRNALIAADYVIIPlepeVILVEDA 157
|
170 180
....*....|....*....|....*..
gi 1446207991 613 KEIERALKHFKQNN----IEITGAILN 635
Cdd:pfam01656 158 KRLGGVIAALVGGYallgLKIIGVVLN 184
|
|
| MinD |
cd02036 |
septum site-determining protein MinD; Septum site-determining protein MinD is part of the ... |
466-581 |
2.64e-09 |
|
septum site-determining protein MinD; Septum site-determining protein MinD is part of the operon MinCDE that determines the site of the formation of a septum at mid-cell, an important part of bacterial cell division. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein.
Pssm-ID: 349756 [Multi-domain] Cd Length: 236 Bit Score: 57.98 E-value: 2.64e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 466 NIVMVTSASPNVGKSFITANMAVVLANAGKKILLIDTD--LRKGHIHktFGLDNKS--GLSEFLSQHG--GDSISKHQQV 539
Cdd:cd02036 1 RVIVITSGKGGVGKTTTTANLGVALAKLGKKVLLIDADigLRNLDLI--LGLENRIvyTLVDVLEGECrlEQALIKDKRW 78
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1446207991 540 iENLDIISRGKSTTHSSelLMSEQFKHLLDSVKHQYDMVLLD 581
Cdd:cd02036 79 -ENLYLLPASQTRDKDA--LTPEKLEELVKELKDSFDFILID 117
|
|
| AAA_31 |
pfam13614 |
AAA domain; This family includes a wide variety of AAA domains including some that have lost ... |
477-584 |
3.67e-07 |
|
AAA domain; This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.
Pssm-ID: 433350 [Multi-domain] Cd Length: 177 Bit Score: 50.66 E-value: 3.67e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 477 VGKSFITANMAVVLANAGKKILLIDTDlrkGHIHKTFGLDNKSGLSEFLSQH---GGDSISK--HQQVIENLDIISRGKS 551
Cdd:pfam13614 13 VGKTTTSVNLAAALAKKGKKVLLIDLD---PQGNATSGLGIDKNNVEKTIYElliGECNIEEaiIKTVIENLDLIPSNID 89
|
90 100 110
....*....|....*....|....*....|....*...
gi 1446207991 552 TTHSSELLMSEQ-----FKHLLDSVKHQYDMVLLDTAP 584
Cdd:pfam13614 90 LAGAEIELIGIEnreniLKEALEPVKDNYDYIIIDCPP 127
|
|
| Mrp_NBP35 |
cd02037 |
Mrp/NBP35 ATP-binding protein family; Mrp/NBP35 ATP-binding family protein are typically ... |
466-519 |
1.46e-06 |
|
Mrp/NBP35 ATP-binding protein family; Mrp/NBP35 ATP-binding family protein are typically iron-sulfur (FeS) cluster scaffolds that function to assemble nascent FeS clusters for transfer to FeS-requiring enzymes. Members include the eukaryotic nucleotide-binding protein 1 (NUBP1) which is a component of the cytosolic iron-sulfur (Fe/S) protein assembly (CIA) machinery and the archael [NiFe] hydrogenase maturation protein HypB which is required for nickel insertion into [NiFe] hydrogenase.
Pssm-ID: 349757 [Multi-domain] Cd Length: 213 Bit Score: 49.42 E-value: 1.46e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 1446207991 466 NIVMVTSASPNVGKSFITANMAVVLANAGKKILLIDTDLRKGHIHKTFGLDNKS 519
Cdd:cd02037 1 HIIAVLSGKGGVGKSTVAVNLALALAKKGYKVGLLDADIYGPSIPRLLGVEGKP 54
|
|
| CpaE-like |
cd03111 |
pilus assembly ATPase CpaE; This protein family consists of proteins similar to the cpaE ... |
467-642 |
1.71e-06 |
|
pilus assembly ATPase CpaE; This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Pssm-ID: 349765 [Multi-domain] Cd Length: 235 Bit Score: 49.58 E-value: 1.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 467 IVMVTSASPNVGKSFITANMAVVLAN-AGKKILLIDTDLRKGHIHKTFGLDNKSGLSEFLsqhggdsiskhqQVIENLDI 545
Cdd:cd03111 2 VVAVVGAKGGVGASTLAVNLAQELAQrAKDKVLLIDLDLPFGDLGLYLNLRPDYDLADVI------------QNLDRLDR 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 546 IS-RGKSTTHSSEL--------------LMSEQFKHLLDSVKHQYDMVLLDTAPIF-AITDPAIIGkyAGTSLLVAYYGV 609
Cdd:cd03111 70 TLlDSAVTRHSSGLsllpapqeledleaLGAEQVDKLLQVLRAFYDHIIVDLGHFLdEVTLAVLEA--ADEILLVTQQDL 147
|
170 180 190
....*....|....*....|....*....|....*...
gi 1446207991 610 NTVKEIERALKHFKQ-----NNIEItgaILNGIDEKSD 642
Cdd:cd03111 148 PSLRNARRLLDSLRElegssDRLRL---VLNRYDKKSE 182
|
|
| SIMIBI |
cd01983 |
SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal ... |
466-503 |
5.66e-06 |
|
SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal recognition particle, MinD, and BioD), consists of signal recognition particle (SRP) GTPases, the assemblage of MinD-like ATPases, which are involved in protein localization, chromosome partitioning, and membrane transport, and a group of metabolic enzymes with kinase or related phosphate transferase activity. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Pssm-ID: 349751 [Multi-domain] Cd Length: 107 Bit Score: 45.50 E-value: 5.66e-06
10 20 30
....*....|....*....|....*....|....*...
gi 1446207991 466 NIVMVTSASPNVGKSFITANMAVVLANAGKKILLIDTD 503
Cdd:cd01983 1 RVIAVTGGKGGVGKTTLAAALAVALAAKGYKVLLIDLD 38
|
|
| ParA |
pfam10609 |
NUBPL iron-transfer P-loop NTPase; This family contains ATPases involved in plasmid ... |
466-519 |
1.17e-05 |
|
NUBPL iron-transfer P-loop NTPase; This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.
Pssm-ID: 431392 [Multi-domain] Cd Length: 246 Bit Score: 47.06 E-value: 1.17e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 1446207991 466 NIVMVTSASPNVGKSFITANMAVVLANAGKKILLIDTDLRkGH-IHKTFGLDNKS 519
Cdd:pfam10609 4 HVIAVASGKGGVGKSTVAVNLALALARLGYKVGLLDADIY-GPsIPRMLGLEGER 57
|
|
| ParAB_family |
cd02042 |
partition proteins ParAB family; ParA and ParB of Caulobacter crescentus belong to a conserved ... |
477-503 |
1.80e-05 |
|
partition proteins ParAB family; ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.
Pssm-ID: 349760 [Multi-domain] Cd Length: 130 Bit Score: 44.45 E-value: 1.80e-05
10 20
....*....|....*....|....*..
gi 1446207991 477 VGKSFITANMAVVLANAGKKILLIDTD 503
Cdd:cd02042 12 VGKTTLAVNLAAALALRGKRVLLIDLD 38
|
|
| WzzB |
COG3765 |
LPS O-antigen chain length determinant protein, WzzB/FepE family [Cell wall/membrane/envelope ... |
219-397 |
2.05e-05 |
|
LPS O-antigen chain length determinant protein, WzzB/FepE family [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442979 [Multi-domain] Cd Length: 364 Bit Score: 47.27 E-value: 2.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 219 FLDNYIPKVKNK-LDHYENQL--------NTFRKQNESIDLTLEAK-----SALESALHIEEKLNeltfkevelQQRYTR 284
Cdd:COG3765 179 LLRGYIDFANQRvLKELNEELqgaiaarlQSLKAQIKRLEEVAKAQrqrriERLKYALKIAQAAG---------IKKPVY 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 285 SHPTYQSLLDKRQKLLLekeKASKNIQQlpntQQQIIRLTRDVESEQAIYNQLvtkQRELSVLNSGITADVRI----IDS 360
Cdd:COG3765 250 SNGQTPAVKLDPSYLFL---LGTDALQA----ELEILKARGDDYPLNADLYQL---QAQLAQLNALPIDDVGFqpfrYLR 319
|
170 180 190
....*....|....*....|....*....|....*...
gi 1446207991 361 AESYPVA-IAPKKSLIMMLASLLGLVMGCAFVIGKELL 397
Cdd:COG3765 320 TPEEPVKkDKPKRALILVLGALLGGMLGVGVVLIRHAL 357
|
|
| PRK10818 |
PRK10818 |
septum site-determining protein MinD; |
467-619 |
3.69e-04 |
|
septum site-determining protein MinD;
Pssm-ID: 182756 [Multi-domain] Cd Length: 270 Bit Score: 43.00 E-value: 3.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 467 IVMVTSASPNVGKSFITANMAVVLANAGKKILLIDTDLRKGHIHKTFGLDNKSgLSEFLSQHGGDSiSKHQQVI-----E 541
Cdd:PRK10818 4 IIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRV-VYDFVNVIQGDA-TLNQALIkdkrtE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 542 NLDIISrgKSTTHSSELLMSEQFKHLLDSVKHQ-YDMVLLDTAPifAITDPAIIGKY-AGTSLLVAYYGVNTVKEIERAL 619
Cdd:PRK10818 82 NLYILP--ASQTRDKDALTREGVAKVLDDLKAMdFEFIVCDSPA--GIETGALMALYfADEAIITTNPEVSSVRDSDRIL 157
|
|
| minD |
CHL00175 |
septum-site determining protein; Validated |
462-581 |
8.59e-04 |
|
septum-site determining protein; Validated
Pssm-ID: 214385 [Multi-domain] Cd Length: 281 Bit Score: 41.68 E-value: 8.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 462 NQDNNIVMVTSASPNVGKSFITANMAVVLANAGKKILLIDTDLRKGHIHKTFGLDNK---SGLSEFLSQHGGDSISKHQQ 538
Cdd:CHL00175 12 ATMSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLDLLLGLENRvlyTAMDVLEGECRLDQALIRDK 91
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1446207991 539 VIENLDIISRGKSTTHSSelLMSEQFKHLLDSVKHQ-YDMVLLD 581
Cdd:CHL00175 92 RWKNLSLLAISKNRQRYN--VTRKNMNMLVDSLKNRgYDYILID 133
|
|
| Wzz |
pfam02706 |
Chain length determinant protein; This family includes proteins involved in lipopolysaccharide ... |
2-62 |
1.69e-03 |
|
Chain length determinant protein; This family includes proteins involved in lipopolysaccharide (lps) biosynthesis. This family comprises the whole length of chain length determinant protein (or wzz protein) that confers a modal distribution of chain length on the O-antigen component of lps. This region is also found as part of bacterial tyrosine kinases.
Pssm-ID: 460658 [Multi-domain] Cd Length: 90 Bit Score: 38.04 E-value: 1.69e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1446207991 2 YCWFASPIYQANATLQYDKVNQASLLEKMNDGMlfgGNNGQIDSEIEIIKSRMVLGKTVSD 62
Cdd:pfam02706 33 YAFLATPKYTATAQILVPQKKGEAGSLLGSDLQ---AGLQLASTEIEILKSRDVLEKVIDE 90
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
252-363 |
2.14e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.92 E-value: 2.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 252 LEAKSALESalHIEEKLNELTFKEVELQQRytrshptyQSLLDKRQKLLLEKEkaskniQQLPNTQQQIIRLTRDVESEQ 331
Cdd:PRK12704 67 HKLRNEFEK--ELRERRNELQKLEKRLLQK--------EENLDRKLELLEKRE------EELEKKEKELEQKQQELEKKE 130
|
90 100 110
....*....|....*....|....*....|....*.
gi 1446207991 332 AIYNQLVTKQR-ELSVLnSGITAD---VRIIDSAES 363
Cdd:PRK12704 131 EELEELIEEQLqELERI-SGLTAEeakEILLEKVEE 165
|
|
| ParA_partition |
NF041546 |
ParA family partition ATPase; |
477-503 |
4.27e-03 |
|
ParA family partition ATPase;
Pssm-ID: 469431 [Multi-domain] Cd Length: 202 Bit Score: 39.07 E-value: 4.27e-03
10 20
....*....|....*....|....*..
gi 1446207991 477 VGKSFITANMAVVLANAGKKILLIDTD 503
Cdd:NF041546 11 VGKTTLATHLAAALARRGYRVLLVDAD 37
|
|
| YveK |
COG3944 |
Capsular polysaccharide biosynthesis protein YveK [Cell wall/membrane/envelope biogenesis]; |
4-67 |
7.72e-03 |
|
Capsular polysaccharide biosynthesis protein YveK [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443144 [Multi-domain] Cd Length: 309 Bit Score: 38.90 E-value: 7.72e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1446207991 4 WFASPIYQANATLQYDKVNQASLLEKMNDGMLfggNNGQIDSEIEIIKSRMVLGKTVSDLNLDI 67
Cdd:COG3944 34 FLITPVYQASTTLLVSTSSGSDASDLYQGIQT---AQQLVNTYAELLKSPAVLEEVIDELGLDL 94
|
|
| CooC |
COG3640 |
CO dehydrogenase nickel-insertion accessory protein CooC1 [Posttranslational modification, ... |
477-582 |
7.84e-03 |
|
CO dehydrogenase nickel-insertion accessory protein CooC1 [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 442857 [Multi-domain] Cd Length: 249 Bit Score: 38.61 E-value: 7.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1446207991 477 VGKSFITANMAVVLANAGKKILLIDTD----LrkghiHKTFGLDNKSGLSEFLSQH----------GGDSISK------- 535
Cdd:COG3640 11 VGKTTLSALLARYLAEKGKPVLAVDADpnanL-----AEALGLEVEADLIKPLGEMrelikertgaPGGGMFKlnpkvdd 85
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 1446207991 536 --HQQVIE--NLDIISRGKSTT--------HSSelLMSEQFKHLLDSvkhQYDMVLLDT 582
Cdd:COG3640 86 ipEEYLVEgdGVDLLVMGTIEEggsgcycpENA--LLRALLNHLVLG---NYEYVVVDM 139
|
|
| PRK11670 |
PRK11670 |
iron-sulfur cluster carrier protein ApbC; |
466-504 |
7.89e-03 |
|
iron-sulfur cluster carrier protein ApbC;
Pssm-ID: 183270 [Multi-domain] Cd Length: 369 Bit Score: 38.87 E-value: 7.89e-03
10 20 30
....*....|....*....|....*....|....*....
gi 1446207991 466 NIVMVTSASPNVGKSFITANMAVVLANAGKKILLIDTDL 504
Cdd:PRK11670 108 NIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADI 146
|
|
|