bifunctional lytic transglycosylase/C40 family peptidase may catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), and/or cleave peptide cross-bridges between glycan chains
CwlT-like N-terminal lysozyme domain and similar domains; CwlT is a bifunctional cell wall ...
65-215
1.41e-77
CwlT-like N-terminal lysozyme domain and similar domains; CwlT is a bifunctional cell wall hydrolase containing an N-terminal lysozyme domain and a C-terminal NlpC/P60 endopeptidase domain (gamma-d-D-glutamyl-L-diamino acid endopeptidase), and has been implicated in the spread of transposons. Proteins similar to this family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL).
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Pssm-ID: 381612 [Multi-domain] Cd Length: 151 Bit Score: 235.19 E-value: 1.41e-77
CwlT-like N-terminal lysozyme domain and similar domains; CwlT is a bifunctional cell wall ...
65-215
1.41e-77
CwlT-like N-terminal lysozyme domain and similar domains; CwlT is a bifunctional cell wall hydrolase containing an N-terminal lysozyme domain and a C-terminal NlpC/P60 endopeptidase domain (gamma-d-D-glutamyl-L-diamino acid endopeptidase), and has been implicated in the spread of transposons. Proteins similar to this family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL).
Pssm-ID: 381612 [Multi-domain] Cd Length: 151 Bit Score: 235.19 E-value: 1.41e-77
NlpC/P60 family peptidoglycan-binding protein RipD; RipD proteins, such as founding member ...
259-339
1.04e-13
NlpC/P60 family peptidoglycan-binding protein RipD; RipD proteins, such as founding member Rv1566c from Mycobacterium tuberculosis, is a catalytically inactive paralog of the peptidoglycan endopeptidases RipA and RipB. A catalytically important Cys and His pair is replaced by Ala-83 and Ser-132.
Pssm-ID: 468164 [Multi-domain] Cd Length: 177 Bit Score: 68.56 E-value: 1.04e-13
CwlT-like N-terminal lysozyme domain and similar domains; CwlT is a bifunctional cell wall ...
65-215
1.41e-77
CwlT-like N-terminal lysozyme domain and similar domains; CwlT is a bifunctional cell wall hydrolase containing an N-terminal lysozyme domain and a C-terminal NlpC/P60 endopeptidase domain (gamma-d-D-glutamyl-L-diamino acid endopeptidase), and has been implicated in the spread of transposons. Proteins similar to this family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL).
Pssm-ID: 381612 [Multi-domain] Cd Length: 151 Bit Score: 235.19 E-value: 1.41e-77
NlpC/P60 family peptidoglycan-binding protein RipD; RipD proteins, such as founding member ...
259-339
1.04e-13
NlpC/P60 family peptidoglycan-binding protein RipD; RipD proteins, such as founding member Rv1566c from Mycobacterium tuberculosis, is a catalytically inactive paralog of the peptidoglycan endopeptidases RipA and RipB. A catalytically important Cys and His pair is replaced by Ala-83 and Ser-132.
Pssm-ID: 468164 [Multi-domain] Cd Length: 177 Bit Score: 68.56 E-value: 1.04e-13
Transglycosylase SLT domain; This family is distantly related to pfam00062. Members are found ...
71-157
1.01e-06
Transglycosylase SLT domain; This family is distantly related to pfam00062. Members are found in phages, type II, type III and type IV secretion systems.
Pssm-ID: 396169 [Multi-domain] Cd Length: 114 Bit Score: 46.92 E-value: 1.01e-06
lytic transglycosylase(LT)-like domain; Members include the soluble and insoluble ...
85-166
9.08e-04
lytic transglycosylase(LT)-like domain; Members include the soluble and insoluble membrane-bound LTs in bacteria and LTs in bacteriophage lambda. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue.
Pssm-ID: 381594 [Multi-domain] Cd Length: 111 Bit Score: 38.35 E-value: 9.08e-04
Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
References:
Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
of the residues that compose this conserved feature have been mapped to the query sequence.
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