NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1444445625|ref|XP_025884598|]
View 

extensin-2-like, partial [Solanum lycopersicum]

Protein Classification

pollen Ole e 1 allergen/extensin family protein( domain architecture ID 10471875)

pollen Ole e 1 allergen/extensin family protein similar to Olea europaea major pollen allergen Ole e 1 that may be involved in recognition between pollen-stigma and\n pollen tube-style cells

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Pollen_Ole_e_1 pfam01190
Pollen protein Ole e 1 like;
897-986 8.88e-18

Pollen protein Ole e 1 like;


:

Pssm-ID: 460103 [Multi-domain]  Cd Length: 94  Bit Score: 79.32  E-value: 8.88e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1444445625  897 VVGKVYCFRCYDWkhPKMSHGKKHLKGAIVEVTCKAGDKE------IISYGTTKINGKFSITVEGFEYRK-YGAKACKAK 969
Cdd:pfam01190    1 VEGLVYCDSCSRG--SFSLKGAKPLPGAKVRVTCKNGKDGtkgevtSYASGTTDKNGYFKVELPGFDEKDdLKIKECKAK 78

                           90
                   ....*....|....*..
gi 1444445625  970 LHNAPkDSKCSIPTNLH 986
Cdd:pfam01190   79 LVSSP-DPTCNVPTNVN 94
Pollen_Ole_e_1 pfam01190
Pollen protein Ole e 1 like;
372-461 2.57e-17

Pollen protein Ole e 1 like;


:

Pssm-ID: 460103 [Multi-domain]  Cd Length: 94  Bit Score: 78.16  E-value: 2.57e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1444445625  372 VVGKVYCFRCYDWkhPKMSHDKKHLKGAVVEVTCKA------GDKKIVSYGTTKNNGKFSITVKGFEYRK-YGAKACKAK 444
Cdd:pfam01190    1 VEGLVYCDSCSRG--SFSLKGAKPLPGAKVRVTCKNgkdgtkGEVTSYASGTTDKNGYFKVELPGFDEKDdLKIKECKAK 78

                           90
                   ....*....|....*..
gi 1444445625  445 LHYAPKgSKCSIPTNLH 461
Cdd:pfam01190   79 LVSSPD-PTCNVPTNVN 94
 
Name Accession Description Interval E-value
Pollen_Ole_e_1 pfam01190
Pollen protein Ole e 1 like;
897-986 8.88e-18

Pollen protein Ole e 1 like;


Pssm-ID: 460103 [Multi-domain]  Cd Length: 94  Bit Score: 79.32  E-value: 8.88e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1444445625  897 VVGKVYCFRCYDWkhPKMSHGKKHLKGAIVEVTCKAGDKE------IISYGTTKINGKFSITVEGFEYRK-YGAKACKAK 969
Cdd:pfam01190    1 VEGLVYCDSCSRG--SFSLKGAKPLPGAKVRVTCKNGKDGtkgevtSYASGTTDKNGYFKVELPGFDEKDdLKIKECKAK 78

                           90
                   ....*....|....*..
gi 1444445625  970 LHNAPkDSKCSIPTNLH 986
Cdd:pfam01190   79 LVSSP-DPTCNVPTNVN 94
Pollen_Ole_e_1 pfam01190
Pollen protein Ole e 1 like;
372-461 2.57e-17

Pollen protein Ole e 1 like;


Pssm-ID: 460103 [Multi-domain]  Cd Length: 94  Bit Score: 78.16  E-value: 2.57e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1444445625  372 VVGKVYCFRCYDWkhPKMSHDKKHLKGAVVEVTCKA------GDKKIVSYGTTKNNGKFSITVKGFEYRK-YGAKACKAK 444
Cdd:pfam01190    1 VEGLVYCDSCSRG--SFSLKGAKPLPGAKVRVTCKNgkdgtkGEVTSYASGTTDKNGYFKVELPGFDEKDdLKIKECKAK 78

                           90
                   ....*....|....*..
gi 1444445625  445 LHYAPKgSKCSIPTNLH 461
Cdd:pfam01190   79 LVSSPD-PTCNVPTNVN 94
 
Name Accession Description Interval E-value
Pollen_Ole_e_1 pfam01190
Pollen protein Ole e 1 like;
897-986 8.88e-18

Pollen protein Ole e 1 like;


Pssm-ID: 460103 [Multi-domain]  Cd Length: 94  Bit Score: 79.32  E-value: 8.88e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1444445625  897 VVGKVYCFRCYDWkhPKMSHGKKHLKGAIVEVTCKAGDKE------IISYGTTKINGKFSITVEGFEYRK-YGAKACKAK 969
Cdd:pfam01190    1 VEGLVYCDSCSRG--SFSLKGAKPLPGAKVRVTCKNGKDGtkgevtSYASGTTDKNGYFKVELPGFDEKDdLKIKECKAK 78

                           90
                   ....*....|....*..
gi 1444445625  970 LHNAPkDSKCSIPTNLH 986
Cdd:pfam01190   79 LVSSP-DPTCNVPTNVN 94
Pollen_Ole_e_1 pfam01190
Pollen protein Ole e 1 like;
372-461 2.57e-17

Pollen protein Ole e 1 like;


Pssm-ID: 460103 [Multi-domain]  Cd Length: 94  Bit Score: 78.16  E-value: 2.57e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1444445625  372 VVGKVYCFRCYDWkhPKMSHDKKHLKGAVVEVTCKA------GDKKIVSYGTTKNNGKFSITVKGFEYRK-YGAKACKAK 444
Cdd:pfam01190    1 VEGLVYCDSCSRG--SFSLKGAKPLPGAKVRVTCKNgkdgtkGEVTSYASGTTDKNGYFKVELPGFDEKDdLKIKECKAK 78

                           90
                   ....*....|....*..
gi 1444445625  445 LHYAPKgSKCSIPTNLH 461
Cdd:pfam01190   79 LVSSPD-PTCNVPTNVN 94
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH