|
Name |
Accession |
Description |
Interval |
E-value |
| PLN03081 |
PLN03081 |
pentatricopeptide (PPR) repeat-containing protein; Provisional |
125-554 |
3.66e-133 |
|
pentatricopeptide (PPR) repeat-containing protein; Provisional
Pssm-ID: 215563 [Multi-domain] Cd Length: 697 Bit Score: 403.48 E-value: 3.66e-133
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1444425378 125 MISRFMKMGTVDVAKMIFNEVPLRDLVTWNSLIGGYVKNDLCKEALSVFRKMLRSNVEPDGYTFASIITACARLGAIDHA 204
Cdd:PLN03081 265 LIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHA 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1444425378 205 KWVHHLMTERRIELNYILSSALIDMYSKCGRIEIARGIFDSVERTNVSVWNAMINGLGIHGLALDAIEIFSLMEPENVSP 284
Cdd:PLN03081 345 KQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1444425378 285 DSITFIGLLTACSHCGLVEEGQKYFQLMKSLYLIQPQLEHYGTMVDLLGRAGLLDEAYTVIKEMPIEPDAIMWRTFLSAC 364
Cdd:PLN03081 425 NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTAC 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1444425378 365 RIHKNSEMGEVASTKISHLGS---GDYVLLSNIYCSTKKWDNAEKVRCLMKWKGVRKNSGKSWVEVGNVVHQFKAGDRSH 441
Cdd:PLN03081 505 RIHKNLELGRLAAEKLYGMGPeklNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLH 584
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1444425378 442 PEAELIYKTLKKLIHQTKLEGFSSTTELVLMDISDEEKEENLSYHSEKLALAYGILKSSPGTHIQVSKNLRTCPDCHSWM 521
Cdd:PLN03081 585 PQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVI 664
|
410 420 430
....*....|....*....|....*....|...
gi 1444425378 522 KMVAKLLNREIIVRDRIRFHHFADGYCSCGDYW 554
Cdd:PLN03081 665 KFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697
|
|
| DYW_deaminase |
pfam14432 |
DYW family of nucleic acid deaminases; This is the DYW domain found in nucleic acid deaminases ... |
462-554 |
1.13e-37 |
|
DYW family of nucleic acid deaminases; This is the DYW domain found in nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members containing this domain are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. This domain contains a characteriztic zinc-binding motif (CXXC, HXE) which has been shown to bind zinc ions. This domain is often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems.
Pssm-ID: 464172 [Multi-domain] Cd Length: 93 Bit Score: 134.09 E-value: 1.13e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1444425378 462 GFSSTTELVLMDISDEEKEENLSYHSEKLALAYGILKSSPGTHIQVSKNLRTCPDCHSWMKMVAKLLNREIIVRDRIRFH 541
Cdd:pfam14432 1 GYVPDLKFVLHDVDEEEKKQLLHGHSEKLALAYGLLTTPDGATIRITKNLRVCGDCHTAFKYISKIFGREIVVRDASRFH 80
|
90
....*....|...
gi 1444425378 542 HFADGYCSCGDYW 554
Cdd:pfam14432 81 HFKNGLCSCGDFW 93
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
151-184 |
2.54e-06 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 43.98 E-value: 2.54e-06
10 20 30
....*....|....*....|....*....|....
gi 1444425378 151 VTWNSLIGGYVKNDLCKEALSVFRKMLRSNVEPD 184
Cdd:TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PLN03081 |
PLN03081 |
pentatricopeptide (PPR) repeat-containing protein; Provisional |
125-554 |
3.66e-133 |
|
pentatricopeptide (PPR) repeat-containing protein; Provisional
Pssm-ID: 215563 [Multi-domain] Cd Length: 697 Bit Score: 403.48 E-value: 3.66e-133
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1444425378 125 MISRFMKMGTVDVAKMIFNEVPLRDLVTWNSLIGGYVKNDLCKEALSVFRKMLRSNVEPDGYTFASIITACARLGAIDHA 204
Cdd:PLN03081 265 LIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHA 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1444425378 205 KWVHHLMTERRIELNYILSSALIDMYSKCGRIEIARGIFDSVERTNVSVWNAMINGLGIHGLALDAIEIFSLMEPENVSP 284
Cdd:PLN03081 345 KQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1444425378 285 DSITFIGLLTACSHCGLVEEGQKYFQLMKSLYLIQPQLEHYGTMVDLLGRAGLLDEAYTVIKEMPIEPDAIMWRTFLSAC 364
Cdd:PLN03081 425 NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTAC 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1444425378 365 RIHKNSEMGEVASTKISHLGS---GDYVLLSNIYCSTKKWDNAEKVRCLMKWKGVRKNSGKSWVEVGNVVHQFKAGDRSH 441
Cdd:PLN03081 505 RIHKNLELGRLAAEKLYGMGPeklNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLH 584
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1444425378 442 PEAELIYKTLKKLIHQTKLEGFSSTTELVLMDISDEEKEENLSYHSEKLALAYGILKSSPGTHIQVSKNLRTCPDCHSWM 521
Cdd:PLN03081 585 PQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVI 664
|
410 420 430
....*....|....*....|....*....|...
gi 1444425378 522 KMVAKLLNREIIVRDRIRFHHFADGYCSCGDYW 554
Cdd:PLN03081 665 KFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697
|
|
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
120-552 |
2.18e-124 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 385.36 E-value: 2.18e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1444425378 120 VSANLMISRFMKMGTVDVAKMIFNEVPLRDLVTWNSLIGGYVKNDLCKEALSVFRKMLRSnVEPDGYTFASIITACARLG 199
Cdd:PLN03077 425 VVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIG 503
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1444425378 200 AIDHAKWVHHLMTERRIELNYILSSALIDMYSKCGRIEIARGIFDSVERtNVSVWNAMINGLGIHGLALDAIEIFSLMEP 279
Cdd:PLN03077 504 ALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEK-DVVSWNILLTGYVAHGKGSMAVELFNRMVE 582
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1444425378 280 ENVSPDSITFIGLLTACSHCGLVEEGQKYFQLMKSLYLIQPQLEHYGTMVDLLGRAGLLDEAYTVIKEMPIEPDAIMWRT 359
Cdd:PLN03077 583 SGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGA 662
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1444425378 360 FLSACRIHKNSEMGEVASTKISHLGSGD---YVLLSNIYCSTKKWDNAEKVRCLMKWKGVRKNSGKSWVEVGNVVHQFKA 436
Cdd:PLN03077 663 LLNACRIHRHVELGELAAQHIFELDPNSvgyYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLT 742
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1444425378 437 GDRSHPEAELIYKTLKKLIHQTKLEGFSStTELVLMDISDEEKEENLSYHSEKLALAYGILKSSPGTHIQVSKNLRTCPD 516
Cdd:PLN03077 743 DDESHPQIKEINTVLEGFYEKMKASGLAG-SESSSMDEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCEN 821
|
410 420 430
....*....|....*....|....*....|....*.
gi 1444425378 517 CHSWMKMVAKLLNREIIVRDRIRFHHFADGYCSCGD 552
Cdd:PLN03077 822 CHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857
|
|
| DYW_deaminase |
pfam14432 |
DYW family of nucleic acid deaminases; This is the DYW domain found in nucleic acid deaminases ... |
462-554 |
1.13e-37 |
|
DYW family of nucleic acid deaminases; This is the DYW domain found in nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members containing this domain are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. This domain contains a characteriztic zinc-binding motif (CXXC, HXE) which has been shown to bind zinc ions. This domain is often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems.
Pssm-ID: 464172 [Multi-domain] Cd Length: 93 Bit Score: 134.09 E-value: 1.13e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1444425378 462 GFSSTTELVLMDISDEEKEENLSYHSEKLALAYGILKSSPGTHIQVSKNLRTCPDCHSWMKMVAKLLNREIIVRDRIRFH 541
Cdd:pfam14432 1 GYVPDLKFVLHDVDEEEKKQLLHGHSEKLALAYGLLTTPDGATIRITKNLRVCGDCHTAFKYISKIFGREIVVRDASRFH 80
|
90
....*....|...
gi 1444425378 542 HFADGYCSCGDYW 554
Cdd:pfam14432 81 HFKNGLCSCGDFW 93
|
|
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
123-364 |
6.27e-31 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 128.04 E-value: 6.27e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1444425378 123 NLMISRFMKMGTVDVAKMIFNEVPLRDLVTWNSLIGGYVKNDLCKEALSVFRKMLRSNVEPDGYTFASIITACARLGAID 202
Cdd:PLN03077 125 NAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLA 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1444425378 203 HAKWVHHLMTERRIELNYILSSALIDMYSKCGRIEIARGIFDSVERTNVSVWNAMINGLGIHGLALDAIEIFSLMEPENV 282
Cdd:PLN03077 205 RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSV 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1444425378 283 SPDSITFIGLLTACSHCGLVEEGQKYFQL-MKSLYLIqpQLEHYGTMVDLLGRAGLLDEAYTVIKEMPIEpDAIMWRTFL 361
Cdd:PLN03077 285 DPDLMTITSVISACELLGDERLGREMHGYvVKTGFAV--DVSVCNSLIQMYLSLGSWGEAEKVFSRMETK-DAVSWTAMI 361
|
...
gi 1444425378 362 SAC 364
Cdd:PLN03077 362 SGY 364
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
169-369 |
1.23e-14 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 77.22 E-value: 1.23e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1444425378 169 ALSVFRKMLRSNVEPDGYTFASIITACARLGAIDHAKWVHHLMTERRIELNYILSSALIDMYSKCGRIEIARGIFDSVER 248
Cdd:PLN03218 456 ALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRS 535
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1444425378 249 TNVS----VWNAMINGLGIHGLALDAIEIFSLMEPEN--VSPDSITFIGLLTACSHCGLVEEGQKYFQLMK--------- 313
Cdd:PLN03218 536 KNVKpdrvVFNALISACGQSGAVDRAFDVLAEMKAEThpIDPDHITVGALMKACANAGQVDRAKEVYQMIHeynikgtpe 615
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1444425378 314 -------------------SLYL------IQPQLEHYGTMVDLLGRAGLLDEAYTVIKEMP---IEPDAIMWRTFLSACR 365
Cdd:PLN03218 616 vytiavnscsqkgdwdfalSIYDdmkkkgVKPDEVFFSALVDVAGHAGDLDKAFEILQDARkqgIKLGTVSYSSLMGACS 695
|
....
gi 1444425378 366 IHKN 369
Cdd:PLN03218 696 NAKN 699
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
149-373 |
2.09e-12 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 70.29 E-value: 2.09e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1444425378 149 DLVTWNSLIGGYVKNDLCKEALSVFRKMLRSN--VEPDGYTFASIITACARLGAIDHAKWVHHLMTERRIELNYILSSAL 226
Cdd:PLN03218 541 DRVVFNALISACGQSGAVDRAFDVLAEMKAEThpIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIA 620
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1444425378 227 IDMYSKCGRIEIARGIFDSVERTNVS----VWNAMINGLGIHGLALDAIEIFSLMEPENVSPDSITFIGLLTACSHCGLV 302
Cdd:PLN03218 621 VNSCSQKGDWDFALSIYDDMKKKGVKpdevFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNW 700
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1444425378 303 EEGQKYFQLMKSLYLiQPQLEHYGTMVDLLGRAGLLDEAYTVIKEMP---IEPDAIMWRTFLSACRIHKNSEMG 373
Cdd:PLN03218 701 KKALELYEDIKSIKL-RPTVSTMNALITALCEGNQLPKALEVLSEMKrlgLCPNTITYSILLVASERKDDADVG 773
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
148-197 |
5.92e-12 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 60.45 E-value: 5.92e-12
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 1444425378 148 RDLVTWNSLIGGYVKNDLCKEALSVFRKMLRSNVEPDGYTFASIITACAR 197
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
|
|
| E_motif |
pfam20431 |
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) ... |
367-426 |
6.57e-11 |
|
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) proteins which contain a DYW deaminase domain. The DYW domain is required for RNA editing, a process that deaminates specific cytidines to uridines. This motif, together with the E+ motif, precedes the DYW domain and, although their role is not clear, they are essential in the RNA editing reaction. The E/E+ motifs may contain two degenerate PPR motifs that could be involved in RNA or protein binding.
Pssm-ID: 466580 [Multi-domain] Cd Length: 63 Bit Score: 57.94 E-value: 6.57e-11
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1444425378 367 HKNSEMGEVASTKISHL---GSGDYVLLSNIYCSTKKWDNAEKVRCLMKWKGVRKNSGKSWVE 426
Cdd:pfam20431 1 YSNVELAEKAANILLELektNDGNYTLLSNIYAYAGRWKDVERIRKLMKSSGIKKRPGCSWIE 63
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
167-348 |
2.71e-10 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 63.36 E-value: 2.71e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1444425378 167 KEALSvFRKMLRsnvEPDGYTFASIITACARLGAIDHAKWVHHLMTERRIELNYILSSALIDMYSKCGRIEIARGIFDSV 246
Cdd:PLN03218 423 KEAFR-FAKLIR---NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEM 498
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1444425378 247 E----RTNVSVWNAMINGLGIHGLALDAIEIFSLMEPENVSPDSITFIGLLTACSHCGLVEEGQKYFQLMKS-LYLIQPQ 321
Cdd:PLN03218 499 VnagvEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAeTHPIDPD 578
|
170 180
....*....|....*....|....*..
gi 1444425378 322 LEHYGTMVDLLGRAGLLDEAYTVIKEM 348
Cdd:PLN03218 579 HITVGALMKACANAGQVDRAKEVYQMI 605
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
250-298 |
6.97e-07 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 46.20 E-value: 6.97e-07
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 1444425378 250 NVSVWNAMINGLGIHGLALDAIEIFSLMEPENVSPDSITFIGLLTACSH 298
Cdd:pfam13041 2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
151-181 |
7.05e-07 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 45.53 E-value: 7.05e-07
10 20 30
....*....|....*....|....*....|.
gi 1444425378 151 VTWNSLIGGYVKNDLCKEALSVFRKMLRSNV 181
Cdd:pfam01535 1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
151-184 |
2.54e-06 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 43.98 E-value: 2.54e-06
10 20 30
....*....|....*....|....*....|....
gi 1444425378 151 VTWNSLIGGYVKNDLCKEALSVFRKMLRSNVEPD 184
Cdd:TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
|
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
154-416 |
2.55e-06 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 50.62 E-value: 2.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1444425378 154 NSLIGGYVKNDLCKEALSVFRKMLRSNVEPDGYTFASIITACARLGAIDHAKWVHHLMTERRIELNYILSSALIDMYSKC 233
Cdd:PLN03077 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRF 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1444425378 234 GRIEIARGIFDSVERTNVSVWNAMINGLGIHGLALDAIEIFSLMEPENVSPDSITFIGLLTACS---------------- 297
Cdd:PLN03077 135 GELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGgipdlargrevhahvv 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1444425378 298 -------------------HCGLVEEGQKYFQLMKSLYLIQPQLEHYGTMVDLLGRAGLldEAYTVIKEMPIEPDAIMWR 358
Cdd:PLN03077 215 rfgfeldvdvvnalitmyvKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGL--ELFFTMRELSVDPDLMTIT 292
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1444425378 359 TFLSACRIHKNSEMG-EVASTKISHLGSGDYVL---LSNIYCSTKKWDNAEKVRCLMKWKGV 416
Cdd:PLN03077 293 SVISACELLGDERLGrEMHGYVVKTGFAVDVSVcnsLIQMYLSLGSWGEAEKVFSRMETKDA 354
|
|
| PPR_3 |
pfam13812 |
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ... |
171-232 |
3.81e-06 |
|
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.
Pssm-ID: 316342 [Multi-domain] Cd Length: 63 Bit Score: 44.27 E-value: 3.81e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1444425378 171 SVFRKMLRSNVEPDGYTFASIITACARLGAIDHAKWVHHLMTERRIELNYILSSALIDMYSK 232
Cdd:pfam13812 1 SILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGG 62
|
|
| PPR_1 |
pfam12854 |
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ... |
149-176 |
1.98e-03 |
|
PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.
Pssm-ID: 403914 [Multi-domain] Cd Length: 34 Bit Score: 35.78 E-value: 1.98e-03
10 20
....*....|....*....|....*...
gi 1444425378 149 DLVTWNSLIGGYVKNDLCKEALSVFRKM 176
Cdd:pfam12854 6 DVVTYNTLINGLCRAGRVDEAFELLDEM 33
|
|
| Eplus_motif |
pfam20430 |
E+ motif; This is the E+ motif found in some plant pentatricopeptide repeat (PPR) proteins ... |
431-455 |
2.61e-03 |
|
E+ motif; This is the E+ motif found in some plant pentatricopeptide repeat (PPR) proteins which contain a C-terminal DYW deaminase domain. The DYW domain is required for RNA editing, a process that deaminates specific cytidines to uridines. This motif, together with the E motif, precedes the DYW domain and, although their role is not clear, they are essential in th RNA editing reaction. The E/E+ motifs may contain two degenerate PPR motifs that could be involved in RNA or protein binding.
Pssm-ID: 466579 [Multi-domain] Cd Length: 28 Bit Score: 35.33 E-value: 2.61e-03
|
| |
