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Conserved domains on  [gi|1443097822|ref|XP_025875988|]
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uncharacterized protein [Oryza sativa Japonica Group]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
WcaA super family cl33890
Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]; ...
 14-48 6.08e-05

Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis];


The actual alignment was detected with superfamily member COG0463:

Pssm-ID: 440231 [Multi-domain]  Cd Length: 208  Bit Score: 38.91  E-value: 6.08e-05
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1443097822  14 RMRISVNTITQNRAKSLRRLLASLRNTYYVDDEVV 48
Cdd:COG0463     1 MPLVSVVIPTYNEEEYLEEALESLLAQTYPDFEII 35
 
Name Accession Description Interval E-value
WcaA COG0463
Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]; ...
 14-48 6.08e-05

Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440231 [Multi-domain]  Cd Length: 208  Bit Score: 38.91  E-value: 6.08e-05
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1443097822  14 RMRISVNTITQNRAKSLRRLLASLRNTYYVDDEVV 48
Cdd:COG0463     1 MPLVSVVIPTYNEEEYLEEALESLLAQTYPDFEII 35
 
Name Accession Description Interval E-value
WcaA COG0463
Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]; ...
 14-48 6.08e-05

Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440231 [Multi-domain]  Cd Length: 208  Bit Score: 38.91  E-value: 6.08e-05
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1443097822  14 RMRISVNTITQNRAKSLRRLLASLRNTYYVDDEVV 48
Cdd:COG0463     1 MPLVSVVIPTYNEEEYLEEALESLLAQTYPDFEII 35
WcaE COG1216
Glycosyltransferase, GT2 family [Carbohydrate transport and metabolism];
14-48 5.49e-04

Glycosyltransferase, GT2 family [Carbohydrate transport and metabolism];


Pssm-ID: 440829 [Multi-domain]  Cd Length: 202  Bit Score: 36.51  E-value: 5.49e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1443097822  14 RMRISVNTITQNRAKSLRRLLASLRNTYYVDDEVV 48
Cdd:COG1216     2 RPKVSVVIPTYNRPELLRRCLESLLAQTYPPFEVI 36
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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