|
Name |
Accession |
Description |
Interval |
E-value |
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
21-625 |
7.08e-93 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 307.16 E-value: 7.08e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 21 MSSLGFSSPGFLqlLYILKFFCLLPLVIGSNETEsdrqALLCLKSQLTGSAEVLSSWsNASMEFCSWHGVTCSTQypRRV 100
Cdd:PLN00113 1 MAKKGPQHCPYL--IFMLFFLFLNFSMLHAEELE----LLLSFKSSINDPLKYLSNW-NSSADVCLWQGITCNNS--SRV 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 101 TALDLSSEGITGSISPCIANLTYLTKLQLSNNSFYGSIPSELgfltqlsilnismnslegnipseLTSCFKLQKIDLSNN 180
Cdd:PLN00113 72 VSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDI-----------------------FTTSSSLRYLNLSNN 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 181 KLQGSIPSafGDLTELRTLILTSNRLSGDIPQSLGSNLSLTYVDLGRNALAGRIPQSLASSTSLQFLILTSNTLSGELPK 260
Cdd:PLN00113 129 NFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR 206
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 261 ALLNSSSLifldlqqnnfvgsippvtaispKMYYLDlrFNHLTGTIPSSLGNLSSLTYLCLIGNNLVGSIPDTLGHVPTL 340
Cdd:PLN00113 207 ELGQMKSL----------------------KWIYLG--YNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNL 262
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 341 ETLAVNVNNLSGPVPPSIFNVTSLTYLGMANNSLTGRLPSNIgYTLPNIQQLILPNNKFSGSIPSSLLNASHLQRLFLTN 420
Cdd:PLN00113 263 QYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELV-IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWS 341
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 421 NSFTGHIPF-FGSLQNLEILDMAYNMLEAgdwSFVSSLTNCSKLTQLLLDGNNLQGNLPSCIGNlSSSLEHLWLRNNMIS 499
Cdd:PLN00113 342 NKFSGEIPKnLGKHNNLTVLDLSTNNLTG---EIPEGLCSSGNLFKLILFSNSLEGEIPKSLGA-CRSLRRVRLQDNSFS 417
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 500 GLIPPGIGNLKSLNTLYMDDNYLTGNIPPTIGYLHNMNKLYMDYNYLTGNIPPTIGYlHSMVFLSFSHNRLSGQIPGTIG 579
Cdd:PLN00113 418 GELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLG 496
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 1443084927 580 NLVQLNELRLDENNLSGSIPASIRHCTQLTKLNLAHNSLHGTTIAS 625
Cdd:PLN00113 497 SLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPAS 542
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
98-406 |
3.34e-45 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 172.73 E-value: 3.34e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 98 RRVTALDLSSEGITGSISPCIANLTYLTKLQLSNNSFYGSIPSELGFLTQLSILNISMNSLEGNIPSELTSCFKLQKIDL 177
Cdd:PLN00113 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDL 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 178 SNNKLQGSIPSAFGDLTELRTLILTSNRLSGDIPQSLGSNLSLTYVDLGRNALAGRIPQSLASSTSLQFLILTSNTLSGE 257
Cdd:PLN00113 364 STNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGR 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 258 LPKALLNSSSLIFLDLQQNNFVGSIPPVTAiSPKMYYLDLRFNHLTGTIPSSLGNLSSLTYLCLIGNNLVGSIPDTLGHV 337
Cdd:PLN00113 444 INSRKWDMPSLQMLSLARNKFFGGLPDSFG-SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSC 522
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1443084927 338 PTLETLAVNVNNLSGPVPPSIFNVTSLTYLGMANNSLTGRLPSNIGyTLPNIQQLILPNNKFSGSIPSS 406
Cdd:PLN00113 523 KKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLG-NVESLVQVNISHNHLHGSLPST 590
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
118-374 |
3.73e-23 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 102.32 E-value: 3.73e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 118 IANLTYLTKLQLSNNSFyGSIPSELGFLTQLSILNISMNSLEgNIPSELTSCFKLQKIDLSNNKLQgSIPSAFGDLTELR 197
Cdd:COG4886 109 LSNLTNLESLDLSGNQL-TDLPEELANLTNLKELDLSNNQLT-DLPEPLGNLTNLKSLDLSNNQLT-DLPEELGNLTNLK 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 198 TLILTSNRLSgDIPQSLGSNLSLTYVDLGRNALAgRIPQSLASSTSLQFLILTSNTLSgELPkALLNSSSLIFLDLqQNN 277
Cdd:COG4886 186 ELDLSNNQIT-DLPEPLGNLTNLEELDLSGNQLT-DLPEPLANLTNLETLDLSNNQLT-DLP-ELGNLTNLEELDL-SNN 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 278 FVGSIPPVTAIsPKMYYLDLRFNHLTGTIPSSLGNLSSLTYLCLIGNNLVGSIPDTLGHVPTLETLAVNVNNLSGPVPPS 357
Cdd:COG4886 261 QLTDLPPLANL-TNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTT 339
|
250
....*....|....*..
gi 1443084927 358 IFNVTSLTYLGMANNSL 374
Cdd:COG4886 340 LALSLSLLALLTLLLLL 356
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
51-496 |
4.08e-21 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 96.16 E-value: 4.08e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 51 NETESDRQALLCLKSQLTGSAEVLSSWSNASMEFCSWHGVTCSTQYPRRVTALDLSSEGITGSISPCIANLTYLTKLQLS 130
Cdd:COG4886 1 LLLLLLSLTLKLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 131 NNSFYGSIPSELGFLTQLSILNISMNSlegnipsELTSCFKLQKIDLSNNKLQgSIPSAFGDLTELRTLILTSNRLSgDI 210
Cdd:COG4886 81 LLSLLLLGLTDLGDLTNLTELDLSGNE-------ELSNLTNLESLDLSGNQLT-DLPEELANLTNLKELDLSNNQLT-DL 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 211 PQSLGSNLSLTYVDLGRNALAGrIPQSLASSTSLQFLILTSNTLSgELPKALLNSSSLIFLDLQQNNFvgsippvtaisp 290
Cdd:COG4886 152 PEPLGNLTNLKSLDLSNNQLTD-LPEELGNLTNLKELDLSNNQIT-DLPEPLGNLTNLEELDLSGNQL------------ 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 291 kmyyldlrfnhltGTIPSSLGNLSSLTYLCLIGNNLVgSIPDtLGHVPTLETLAVNVNNLSGPvpPSIFNVTSLTYLGMA 370
Cdd:COG4886 218 -------------TDLPEPLANLTNLETLDLSNNQLT-DLPE-LGNLTNLEELDLSNNQLTDL--PPLANLTNLKTLDLS 280
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 371 NNSLTGRLPSNIgYTLPNIQQLILPNNKFSGSIPSSLLNASHLQRLFLTNNSFTGHIPFFGSLQNLEILDMAYNMLEAGD 450
Cdd:COG4886 281 NNQLTDLKLKEL-ELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLL 359
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 1443084927 451 WSFVSSLTNCSKLTQLLLDGNNLQGNLPSCIGNLSSSLEHLWLRNN 496
Cdd:COG4886 360 SLLLTLLLTLGLLGLLEATLLTLALLLLTLLLLLLTTTAGVLLLTL 405
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
300-620 |
3.60e-19 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 90.38 E-value: 3.60e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 300 NHLTGTIPSSLGNLSSLTYLCLIGNNLVGSIPDTLGHVPTLETLAVNVNNLSGPVPPSIFNVTSLTYLGMANNSLTGRLP 379
Cdd:COG4886 1 LLLLLLSLTLKLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 380 SNIGYTLPNIQQLILPNNK-FSGSIPSSLLNASHLQRLFLTNNSFTGHIPFFGSLQNLEILDMAYNMLEagdwSFVSSLT 458
Cdd:COG4886 81 LLSLLLLGLTDLGDLTNLTeLDLSGNEELSNLTNLESLDLSGNQLTDLPEELANLTNLKELDLSNNQLT----DLPEPLG 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 459 NCSKLTQLLLDGNNLQgNLPSCIGNLsSSLEHLWLRNNMISGLiPPGIGNLKSLNTLYMDDNYLTgNIPPTIGYLHNMNK 538
Cdd:COG4886 157 NLTNLKSLDLSNNQLT-DLPEELGNL-TNLKELDLSNNQITDL-PEPLGNLTNLEELDLSGNQLT-DLPEPLANLTNLET 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 539 LYMDYNYLTgnIPPTIGYLHSMVFLSFSHNRLSGqIPgTIGNLVQLNELRLDENNLSGSIPASIRHCTQLTKLNLAHNSL 618
Cdd:COG4886 233 LDLSNNQLT--DLPELGNLTNLEELDLSNNQLTD-LP-PLANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLL 308
|
..
gi 1443084927 619 HG 620
Cdd:COG4886 309 NL 310
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
152-550 |
9.07e-19 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 89.22 E-value: 9.07e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 152 NISMNSLEGNIPSELTSCFKLQKIDLSNNKLQGSIPSAFGDLTELRTLILTSNRLSGDIPQSLGSNLSLTYVDLGRNALA 231
Cdd:COG4886 1 LLLLLLSLTLKLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 232 GRIPQSLASSTSLQFLILTSNTLSGelPKALLNSSSLIFLDLQQNNfVGSIPPVTAISPKMYYLDLRFNHLTgTIPSSLG 311
Cdd:COG4886 81 LLSLLLLGLTDLGDLTNLTELDLSG--NEELSNLTNLESLDLSGNQ-LTDLPEELANLTNLKELDLSNNQLT-DLPEPLG 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 312 NLSSLTYLCLIGNNLvGSIPDTLGHVPTLETLAVNVNNLSgPVPPSIFNVTSLTYLGMANNSLTgRLPSNIGyTLPNIQQ 391
Cdd:COG4886 157 NLTNLKSLDLSNNQL-TDLPEELGNLTNLKELDLSNNQIT-DLPEPLGNLTNLEELDLSGNQLT-DLPEPLA-NLTNLET 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 392 LILPNNKFSgSIPSsLLNASHLQRLFLTNNSFTgHIPFFGSLQNLEILDMAYNMLEAGDWSFVSSLTNCSKLTQLLLDGN 471
Cdd:COG4886 233 LDLSNNQLT-DLPE-LGNLTNLEELDLSNNQLT-DLPPLANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLN 309
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1443084927 472 NLQGNLPSCIGNLSSSLEHLWLRNNMISGLIPPGIGNLKSLNTLYMDDNYLTGNIPPTIGYLHNMNKLYMDYNYLTGNI 550
Cdd:COG4886 310 LLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLALLLLT 388
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
237-598 |
1.09e-17 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 85.76 E-value: 1.09e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 237 SLASSTSLQFLILTSNTLSGELPKALLNSSSLIFLDLQQNNFVGSIPPVTAISPKMYYLDLRFNHLTGTIPSSLGNLSSL 316
Cdd:COG4886 16 LLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 317 TYLcligNNLVGSIPDTLGHVPTLETLAVNVNNLSGpVPPSIFNVTSLTYLGMANNSLTgRLPSNIGYtLPNIQQLILPN 396
Cdd:COG4886 96 TNL----TELDLSGNEELSNLTNLESLDLSGNQLTD-LPEELANLTNLKELDLSNNQLT-DLPEPLGN-LTNLKSLDLSN 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 397 NKFSgSIPSSLLNASHLQRLFLTNNSFTGHIPFFGSLQNLEILDMAYNMLEagdwSFVSSLTNCSKLTQLLLDGNNLQgN 476
Cdd:COG4886 169 NQLT-DLPEELGNLTNLKELDLSNNQITDLPEPLGNLTNLEELDLSGNQLT----DLPEPLANLTNLETLDLSNNQLT-D 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 477 LPScIGNLSSsLEHLWLRNNMISGLipPGIGNLKSLNTLYMDDNYLTGNIPPTIGYLHNMNKLYMDYNYLTGNIPPTIGY 556
Cdd:COG4886 243 LPE-LGNLTN-LEELDLSNNQLTDL--PPLANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLL 318
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 1443084927 557 LHSMVFLSFSHNRLSGQIPGTIGNLVQLNELRLDENNLSGSI 598
Cdd:COG4886 319 LLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLS 360
|
|
| PLN03150 |
PLN03150 |
hypothetical protein; Provisional |
127-218 |
8.17e-17 |
|
hypothetical protein; Provisional
Pssm-ID: 178695 [Multi-domain] Cd Length: 623 Bit Score: 84.10 E-value: 8.17e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 127 LQLSNNSFYGSIPSELGFLTQLSILNISMNSLEGNIPSELTSCFKLQKIDLSNNKLQGSIPSAFGDLTELRTLILTSNRL 206
Cdd:PLN03150 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502
|
90
....*....|..
gi 1443084927 207 SGDIPQSLGSNL 218
Cdd:PLN03150 503 SGRVPAALGGRL 514
|
|
| PLN03150 |
PLN03150 |
hypothetical protein; Provisional |
175-292 |
1.51e-15 |
|
hypothetical protein; Provisional
Pssm-ID: 178695 [Multi-domain] Cd Length: 623 Bit Score: 80.24 E-value: 1.51e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 175 IDLSNNKLQGSIPSAFGDLTELRTLILTSNRLSGDIPQSLGSNLSLTYVDLGRNALAGRIPQSLASSTSLQFLILTSNTL 254
Cdd:PLN03150 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1443084927 255 SGELPKAL----LNSSSLIFLDlqqNNFVGSIPPVTAISPKM 292
Cdd:PLN03150 503 SGRVPAALggrlLHRASFNFTD---NAGLCGIPGLRACGPHL 541
|
|
| PLN03150 |
PLN03150 |
hypothetical protein; Provisional |
151-238 |
7.69e-15 |
|
hypothetical protein; Provisional
Pssm-ID: 178695 [Multi-domain] Cd Length: 623 Bit Score: 77.93 E-value: 7.69e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 151 LNISMNSLEGNIPSELTSCFKLQKIDLSNNKLQGSIPSAFGDLTELRTLILTSNRLSGDIPQSLGSNLSLTYVDLGRNAL 230
Cdd:PLN03150 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502
|
....*...
gi 1443084927 231 AGRIPQSL 238
Cdd:PLN03150 503 SGRVPAAL 510
|
|
| PLN03150 |
PLN03150 |
hypothetical protein; Provisional |
515-602 |
4.31e-14 |
|
hypothetical protein; Provisional
Pssm-ID: 178695 [Multi-domain] Cd Length: 623 Bit Score: 75.24 E-value: 4.31e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 515 LYMDDNYLTGNIPPTIGYLHNMNKLYMDYNYLTGNIPPTIGYLHSMVFLSFSHNRLSGQIPGTIGNLVQLNELRLDENNL 594
Cdd:PLN03150 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502
|
....*...
gi 1443084927 595 SGSIPASI 602
Cdd:PLN03150 503 SGRVPAAL 510
|
|
| PLN03150 |
PLN03150 |
hypothetical protein; Provisional |
491-579 |
4.19e-12 |
|
hypothetical protein; Provisional
Pssm-ID: 178695 [Multi-domain] Cd Length: 623 Bit Score: 69.07 E-value: 4.19e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 491 LWLRNNMISGLIPPGIGNLKSLNTLYMDDNYLTGNIPPTIGYLHNMNKLYMDYNYLTGNIPPTIGYLHSMVFLSFSHNRL 570
Cdd:PLN03150 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502
|
....*....
gi 1443084927 571 SGQIPGTIG 579
Cdd:PLN03150 503 SGRVPAALG 511
|
|
| PLN03150 |
PLN03150 |
hypothetical protein; Provisional |
295-383 |
1.09e-11 |
|
hypothetical protein; Provisional
Pssm-ID: 178695 [Multi-domain] Cd Length: 623 Bit Score: 67.92 E-value: 1.09e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 295 LDLRFNHLTGTIPSSLGNLSSLTYLCLIGNNLVGSIPDTLGHVPTLETLAVNVNNLSGPVPPSIFNVTSLTYLGMANNSL 374
Cdd:PLN03150 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502
|
....*....
gi 1443084927 375 TGRLPSNIG 383
Cdd:PLN03150 503 SGRVPAALG 511
|
|
| PLN03150 |
PLN03150 |
hypothetical protein; Provisional |
98-166 |
1.29e-11 |
|
hypothetical protein; Provisional
Pssm-ID: 178695 [Multi-domain] Cd Length: 623 Bit Score: 67.53 E-value: 1.29e-11
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1443084927 98 RRVTALDLSSEGITGSISPCIANLTYLTKLQLSNNSFYGSIPSELGFLTQLSILNISMNSLEGNIPSEL 166
Cdd:PLN03150 442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510
|
|
| PLN03150 |
PLN03150 |
hypothetical protein; Provisional |
466-576 |
9.81e-11 |
|
hypothetical protein; Provisional
Pssm-ID: 178695 [Multi-domain] Cd Length: 623 Bit Score: 64.84 E-value: 9.81e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 466 LLLDGNNLQGNLPSCIGNLSSsLEHLWLRNNMISGLIPPGIGNLKSLNTLYMDDNYLTGNIPPTIGYLHNMNKLYMDYNY 545
Cdd:PLN03150 423 LGLDNQGLRGFIPNDISKLRH-LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501
|
90 100 110
....*....|....*....|....*....|...
gi 1443084927 546 LTGNIPPTIG--YLHSMVFlSFSHNRLSGQIPG 576
Cdd:PLN03150 502 LSGRVPAALGgrLLHRASF-NFTDNAGLCGIPG 533
|
|
| PLN03150 |
PLN03150 |
hypothetical protein; Provisional |
539-625 |
1.28e-10 |
|
hypothetical protein; Provisional
Pssm-ID: 178695 [Multi-domain] Cd Length: 623 Bit Score: 64.45 E-value: 1.28e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 539 LYMDYNYLTGNIPPTIGYLHSMVFLSFSHNRLSGQIPGTIGNLVQLNELRLDENNLSGSIPASIRHCTQLTKLNLAHNSL 618
Cdd:PLN03150 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502
|
....*..
gi 1443084927 619 HGTTIAS 625
Cdd:PLN03150 503 SGRVPAA 509
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
101-345 |
3.13e-10 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 62.64 E-value: 3.13e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 101 TALDLSSEGITgSISPCIANLTYLTKLQLSNNSFyGSIPSELGFLTQLSILNISMNSLEgNIPSELTSCFKLQKIDLSNN 180
Cdd:COG4886 162 KSLDLSNNQLT-DLPEELGNLTNLKELDLSNNQI-TDLPEPLGNLTNLEELDLSGNQLT-DLPEPLANLTNLETLDLSNN 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 181 KLQgSIPSaFGDLTELRTLILTSNRLSgDIPQSLG--------------SNLSLTYVDLGRNALAGRIPQSLASSTSLQF 246
Cdd:COG4886 239 QLT-DLPE-LGNLTNLEELDLSNNQLT-DLPPLANltnlktldlsnnqlTDLKLKELELLLGLNSLLLLLLLLNLLELLI 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 247 LILTSNTLSGELPKALLNSSSLIFLDLQQNNFVGSIPPVTAISPKMYYLDLRFNHLTGTIPSSLGNLSSLTYLCLIGNNL 326
Cdd:COG4886 316 LLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLALLLLTLLLLLLT 395
|
250
....*....|....*....
gi 1443084927 327 VGSIPDTLGHVPTLETLAV 345
Cdd:COG4886 396 TTAGVLLLTLALLDAVNTE 414
|
|
| PLN03150 |
PLN03150 |
hypothetical protein; Provisional |
389-482 |
4.46e-10 |
|
hypothetical protein; Provisional
Pssm-ID: 178695 [Multi-domain] Cd Length: 623 Bit Score: 62.53 E-value: 4.46e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 389 IQQLILPNNKFSGSIPSSLLNASHLQRLFLTNNSFTGHIPF-FGSLQNLEILDMAYNMLEAgdwSFVSSLTNCSKLTQLL 467
Cdd:PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPsLGSITSLEVLDLSYNSFNG---SIPESLGQLTSLRILN 496
|
90
....*....|....*
gi 1443084927 468 LDGNNLQGNLPSCIG 482
Cdd:PLN03150 497 LNGNSLSGRVPAALG 511
|
|
| LRRNT_2 |
pfam08263 |
Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence ... |
54-93 |
7.91e-09 |
|
Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats.
Pssm-ID: 462411 [Multi-domain] Cd Length: 41 Bit Score: 51.53 E-value: 7.91e-09
10 20 30 40
....*....|....*....|....*....|....*....|
gi 1443084927 54 ESDRQALLCLKSQLTGSAEVLSSWSNASMEFCSWHGVTCS 93
Cdd:pfam08263 2 NDDGQALLAFKSSLNDPPGALSSWNSSSSDPCSWTGVTCD 41
|
|
| PLN03150 |
PLN03150 |
hypothetical protein; Provisional |
462-531 |
7.93e-09 |
|
hypothetical protein; Provisional
Pssm-ID: 178695 [Multi-domain] Cd Length: 623 Bit Score: 58.67 E-value: 7.93e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 462 KLTQLLLDGNNLQGNLPSCIGNLsSSLEHLWLRNNMISGLIPPGIGNLKSLNTLYMDDNYLTGNIPPTIG 531
Cdd:PLN03150 443 HLQSINLSGNSIRGNIPPSLGSI-TSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511
|
|
| PLN03150 |
PLN03150 |
hypothetical protein; Provisional |
223-352 |
8.13e-09 |
|
hypothetical protein; Provisional
Pssm-ID: 178695 [Multi-domain] Cd Length: 623 Bit Score: 58.67 E-value: 8.13e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 223 VDLGRNALAGRIPQSLASSTSLQFLILTSNTLSGELPKALlnssslifldlqqnnfvGSIPPVTAispkmyyLDLRFNHL 302
Cdd:PLN03150 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL-----------------GSITSLEV-------LDLSYNSF 478
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1443084927 303 TGTIPSSLGNLSSLTYLCLIGNNLVGSIPDTLGHVPtLETLAVNVNNLSG 352
Cdd:PLN03150 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRL-LHRASFNFTDNAG 527
|
|
| PLN03150 |
PLN03150 |
hypothetical protein; Provisional |
326-407 |
8.49e-09 |
|
hypothetical protein; Provisional
Pssm-ID: 178695 [Multi-domain] Cd Length: 623 Bit Score: 58.67 E-value: 8.49e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 326 LVGSIPDTLGHVPTLETLAVNVNNLSGPVPPSIFNVTSLTYLGMANNSLTGRLPSNIGyTLPNIQQLILPNNKFSGSIPS 405
Cdd:PLN03150 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLG-QLTSLRILNLNGNSLSGRVPA 508
|
..
gi 1443084927 406 SL 407
Cdd:PLN03150 509 AL 510
|
|
| PLN03150 |
PLN03150 |
hypothetical protein; Provisional |
344-428 |
1.62e-08 |
|
hypothetical protein; Provisional
Pssm-ID: 178695 [Multi-domain] Cd Length: 623 Bit Score: 57.52 E-value: 1.62e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 344 AVNVNN--LSGPVPPSIFNVTSLTYLGMANNSLTGRLPSNIGyTLPNIQQLILPNNKFSGSIPSSLLNASHLQRLFLTNN 421
Cdd:PLN03150 422 GLGLDNqgLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG-SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500
|
....*..
gi 1443084927 422 SFTGHIP 428
Cdd:PLN03150 501 SLSGRVP 507
|
|
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
462-616 |
6.86e-08 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 53.64 E-value: 6.86e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 462 KLTQLLLDGNNLqgnlpSCIGNLSS--SLEHLWLRNNMISGLipPGIGNLKSLNTLYMDDNYLTgNIPPtIGYLHNMNKL 539
Cdd:cd21340 3 RITHLYLNDKNI-----TKIDNLSLckNLKVLYLYDNKITKI--ENLEFLTNLTHLYLQNNQIE-KIEN-LENLVNLKKL 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 540 YMDYNYLT---G---------------NIPP---------TIGYL-HSMVFLSFSHNRLSgqIPGTIGNLVQLNELRLDE 591
Cdd:cd21340 74 YLGGNRISvveGlenltnleelhienqRLPPgekltfdprSLAALsNSLRVLNISGNNID--SLEPLAPLRNLEQLDASN 151
|
170 180
....*....|....*....|....*..
gi 1443084927 592 NNLS--GSIPASIRHCTQLTKLNLAHN 616
Cdd:cd21340 152 NQISdlEELLDLLSSWPSLRELDLTGN 178
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
105-310 |
4.22e-05 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 46.32 E-value: 4.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 105 LSSEGITGSISPCIANlTYLTKLQLSNNSFYGS----IPSELGFLTQLSILNISMNSL--EG--NIPSELTSCFKLQKID 176
Cdd:COG5238 192 IGDEGIEELAEALTQN-TTVTTLWLKRNPIGDEgaeiLAEALKGNKSLTTLDLSNNQIgdEGviALAEALKNNTTVETLY 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 177 LSNNKL--QG--SIPSAFGDLTELRTLILTSNRLSGD----IPQSLGSNLSLTYVDLGRNAL----AGRIPQSLASSTSL 244
Cdd:COG5238 271 LSGNQIgaEGaiALAKALQGNTTLTSLDLSVNRIGDEgaiaLAEGLQGNKTLHTLNLAYNGIgaqgAIALAKALQENTTL 350
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1443084927 245 QFLILTSNTLSGE----LPKALLNSSSLIFLDLQQNNfvgsIPPVTAIS-------PKMYYLDLRFNHLTGTIPSSL 310
Cdd:COG5238 351 HSLDLSDNQIGDEgaiaLAKYLEGNTTLRELNLGKNN----IGKQGAEAlidalqtNRLHTLILDGNLIGAEAQQRL 423
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
138-351 |
6.07e-05 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 45.42 E-value: 6.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 138 IPSELGFLTQLSILNISMNSLEGN------IPSELTSCFKLQKIDLSNNKLQGSIPSAFGDLT---ELRTLILTSNRLSG 208
Cdd:cd00116 43 LASALRPQPSLKELCLSLNETGRIprglqsLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLrssSLQELKLNNNGLGD 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 209 DIPQ----SLGSN-LSLTYVDLGRNALAGRIPQSLA----SSTSLQFLILTSNTLSGE----LPKALLNSSSLIFLDLQQ 275
Cdd:cd00116 123 RGLRllakGLKDLpPALEKLVLGRNRLEGASCEALAkalrANRDLKELNLANNGIGDAgiraLAEGLKANCNLEVLDLNN 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 276 NNF----VGSIPPVTAISPKMYYLDLRFNHLTGTI-----PSSLGNLSSLTYLCLIGNNLVGSIPDTLGHV----PTLET 342
Cdd:cd00116 203 NGLtdegASALAETLASLKSLEVLNLGDNNLTDAGaaalaSALLSPNISLLTLSLSCNDITDDGAKDLAEVlaekESLLE 282
|
....*....
gi 1443084927 343 LAVNVNNLS 351
Cdd:cd00116 283 LDLRGNKFG 291
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
171-230 |
7.10e-05 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 40.97 E-value: 7.10e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 171 KLQKIDLSNNKLQGSIPSAFGDLTELRTLILTSNRLSGDIPQSLGSNLSLTYVDLGRNAL 230
Cdd:pfam13855 2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
|
|
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
98-289 |
3.28e-04 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 42.47 E-value: 3.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 98 RRVTALDLSSEGIT--GSISPCIAnltyLTKLQLSNNSFYgSIPSeLGFLTQLSIL-----NISmnSLEGnipseLTSCF 170
Cdd:cd21340 2 KRITHLYLNDKNITkiDNLSLCKN----LKVLYLYDNKIT-KIEN-LEFLTNLTHLylqnnQIE--KIEN-----LENLV 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 171 KLQKIDLSNNKLqgSIPSAFGDLTELRTLILTSNRLSGDI-----PQSLGSNL-SLTYVDLGRNALagRIPQSLASSTSL 244
Cdd:cd21340 69 NLKKLYLGGNRI--SVVEGLENLTNLEELHIENQRLPPGEkltfdPRSLAALSnSLRVLNISGNNI--DSLEPLAPLRNL 144
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1443084927 245 QFLILTSNTLS--GELPKALLNSSSLIFLDLQQNnfvgsipPVTAIS 289
Cdd:cd21340 145 EQLDASNNQISdlEELLDLLSSWPSLRELDLTGN-------PVCKKP 184
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
194-252 |
6.49e-04 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 38.27 E-value: 6.49e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 1443084927 194 TELRTLILTSNRLSGDIPQSLGSNLSLTYVDLGRNALAGRIPQSLASSTSLQFLILTSN 252
Cdd:pfam13855 1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGN 59
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
209-469 |
8.49e-04 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 41.96 E-value: 8.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 209 DIPQSLGSNLSLTYVDLGRNALA------GRIPQSLASSTSLQFLILTSNTLSGELP---KALLNSSSLIFLDLQQNNFV 279
Cdd:cd00116 42 ALASALRPQPSLKELCLSLNETGriprglQSLLQGLTKGCGLQELDLSDNALGPDGCgvlESLLRSSSLQELKLNNNGLG 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 280 GSIPPVTAISPKMYYLDLRFNHLTGtipsslgnlssltylCLIGNNLVGSIPDTLGHVPTLETLAVNVNNLSGPVPPSIF 359
Cdd:cd00116 122 DRGLRLLAKGLKDLPPALEKLVLGR---------------NRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALA 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 360 ----NVTSLTYLGMANNSLT---GRLPSNIGYTLPNIQQLILPNNKFSGSIPSSLLNASH-----LQRLFLTNNSFT--G 425
Cdd:cd00116 187 eglkANCNLEVLDLNNNGLTdegASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLspnisLLTLSLSCNDITddG 266
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 1443084927 426 HIPFFGSLQN---LEILDMAYNMLEAGDWSFVSSLTNCSKLTQLLLD 469
Cdd:cd00116 267 AKDLAEVLAEkesLLELDLRGNKFGEEGAQLLAESLLEPGNELESLW 313
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
120-278 |
1.12e-03 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 41.57 E-value: 1.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 120 NLTYLTKLQLSNNSFY----GSIPSEL--GFLTQLSILNISM--------------------------NSLEGN----IP 163
Cdd:cd00116 79 KGCGLQELDLSDNALGpdgcGVLESLLrsSSLQELKLNNNGLgdrglrllakglkdlppaleklvlgrNRLEGAsceaLA 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 164 SELTSCFKLQKIDLSNNKLQGS-IPS---AFGDLTELRTLILTSNRL----SGDIPQSLGSNLSLTYVDLGRNALAGRI- 234
Cdd:cd00116 159 KALRANRDLKELNLANNGIGDAgIRAlaeGLKANCNLEVLDLNNNGLtdegASALAETLASLKSLEVLNLGDNNLTDAGa 238
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1443084927 235 ----PQSLASSTSLQFLILTSNTLSGE----LPKALLNSSSLIFLDLQQNNF 278
Cdd:cd00116 239 aalaSALLSPNISLLTLSLSCNDITDDgakdLAEVLAEKESLLELDLRGNKF 290
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
563-618 |
3.43e-03 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 36.35 E-value: 3.43e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 1443084927 563 LSFSHNRLSGQIPGTIGNLVQLNELRLDENNLSGSIPASIRHCTQLTKLNLAHNSL 618
Cdd:pfam13855 6 LDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
95-264 |
3.91e-03 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 40.16 E-value: 3.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 95 QYPRRVTALDLSSEGITG----SISPCIANLTYLTKLQLSNNsfygsipsELGFLTQLSIlnisMNSLEGNIPseltscf 170
Cdd:COG5238 261 KNNTTVETLYLSGNQIGAegaiALAKALQGNTTLTSLDLSVN--------RIGDEGAIAL----AEGLQGNKT------- 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443084927 171 kLQKIDLSNNKL--QGSIP--SAFGDLTELRTLILTSNRLSGD----IPQSLGSNLSLTYVDLGRNALAGRIPQSLASS- 241
Cdd:COG5238 322 -LHTLNLAYNGIgaQGAIAlaKALQENTTLHSLDLSDNQIGDEgaiaLAKYLEGNTTLRELNLGKNNIGKQGAEALIDAl 400
|
170 180
....*....|....*....|....*
gi 1443084927 242 --TSLQFLILTSNTLsGELPKALLN 264
Cdd:COG5238 401 qtNRLHTLILDGNLI-GAEAQQRLE 424
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
290-350 |
5.34e-03 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 35.58 E-value: 5.34e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1443084927 290 PKMYYLDLRFNHLTGTIPSSLGNLSSLTYLCLIGNNLVGSIPDTLGHVPTLETLAVNVNNL 350
Cdd:pfam13855 1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
411-473 |
7.25e-03 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 35.19 E-value: 7.25e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1443084927 411 SHLQRLFLTNNSFTgHIP--FFGSLQNLEILDMAYNMLeagdwSFVS--SLTNCSKLTQLLLDGNNL 473
Cdd:pfam13855 1 PNLRSLDLSNNRLT-SLDdgAFKGLSNLKVLDLSNNLL-----TTLSpgAFSGLPSLRYLDLSGNRL 61
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