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Conserved domains on  [gi|1439536240|gb|AXI69768|]
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cytochrome b, partial (mitochondrion) [Simondia metchnikovi]

Protein Classification

cytochrome b( domain architecture ID 999997)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Symbol:  CYTB
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl33360
cytochrome b; Provisional
 1-327 7.43e-97

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00156:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 290.53  E-value: 7.43e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240   1 WNYGFLLGIVFCIQILTGVLLATCYTPEVSYAYYSVQHILRELWSGWCFRYMHATGASFVFILTYLHILRGLNYSYSYLP 80
Cdd:MTH00156   21 WNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLK 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240  81 LSWISGLIIFLISIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLVSWICGGYLVSDPTLKRFFVLHFIFPFVAL 156
Cdd:MTH00156  101 HTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPylgtDLVQWIWGGFSVDNATLTRFFTFHFLLPFIIL 180

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240 157 CIVFIHIFFLHLQGSTNPLGYDTAL-KIPFYPNLLSLDIKGFNNVLVLFLAQSLFGILPLSHPDNAITVDRYATPLHIVP 235
Cdd:MTH00156  181 AMVMIHLLFLHQTGSNNPLGLNSNIdKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQP 260

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240 236 EWYFLPFYAMLKTIPNKTAGL--LVMLASLQLLFLLAEQRNVTTlIQF----KLAFgareysvptIWFICSFYALLWIGC 309
Cdd:MTH00156  261 EWYFLFAYAILRSIPNKLGGViaLVMSILILMILPFTNKSKFRG-NQFypinKILF---------WIFVNIVILLTWIGA 330

                         330
                  ....*....|....*...
gi 1439536240 310 QLPQDIYILYGRLFIILF 327
Cdd:MTH00156  331 RPVEEPYILTGQILTILY 348
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-327 7.43e-97

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 290.53  E-value: 7.43e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240   1 WNYGFLLGIVFCIQILTGVLLATCYTPEVSYAYYSVQHILRELWSGWCFRYMHATGASFVFILTYLHILRGLNYSYSYLP 80
Cdd:MTH00156   21 WNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLK 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240  81 LSWISGLIIFLISIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLVSWICGGYLVSDPTLKRFFVLHFIFPFVAL 156
Cdd:MTH00156  101 HTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPylgtDLVQWIWGGFSVDNATLTRFFTFHFLLPFIIL 180

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240 157 CIVFIHIFFLHLQGSTNPLGYDTAL-KIPFYPNLLSLDIKGFNNVLVLFLAQSLFGILPLSHPDNAITVDRYATPLHIVP 235
Cdd:MTH00156  181 AMVMIHLLFLHQTGSNNPLGLNSNIdKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQP 260

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240 236 EWYFLPFYAMLKTIPNKTAGL--LVMLASLQLLFLLAEQRNVTTlIQF----KLAFgareysvptIWFICSFYALLWIGC 309
Cdd:MTH00156  261 EWYFLFAYAILRSIPNKLGGViaLVMSILILMILPFTNKSKFRG-NQFypinKILF---------WIFVNIVILLTWIGA 330

                         330
                  ....*....|....*...
gi 1439536240 310 QLPQDIYILYGRLFIILF 327
Cdd:MTH00156  331 RPVEEPYILTGQILTILY 348
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-259 1.13e-74

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 234.68  E-value: 1.13e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240   1 WNYGFLLG----IVFCIQILTGVLLATCYTPEVSYAYYSVQHILRELWSGWCFRYMHATGASFVFILTYLHILRGLNY-S 75
Cdd:COG1290    36 WNFSYWFGelalYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYgA 115

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240  76 YSYlP--LSWISGLIIFLISIVTAFMGYVLPWGQMSFWGATVITNLLYFIPG----LVSWICGGYLVSDPTLKRFFVLH- 148
Cdd:COG1290   116 YKK-PreLNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVigtwLVTWLFGGEFPGDATLNRFFALHv 194

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240 149 FIFPFVALCIVFIHIFFLHLQGSTNPLGYDTALK-----IPFYPNLLSLDIKGFNNVLVLFLAqsLFGILPLSHPDNAIT 223
Cdd:COG1290   195 LLLPALLLALVVLHLWLLHRHGHNNPPGPERKKTekvdgVPFHPYYTVKDGFGFFVFLGVFAL--LAFFFPINPPPNYGP 272

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1439536240 224 VDRYATPLHIVPEWYFLPFYAMLKTIP--NKTAGLLVM 259
Cdd:COG1290   273 ANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAM 310
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-172 3.98e-54

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 175.63  E-value: 3.98e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240   1 WNYGFLLGIVFCIQILTGVLLATCYTPEVSYAYYSVQHILRELWSGWCFRYMHATGASFVFILTYLHILRGLNYSYSYLP 80
Cdd:cd00284    23 WNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKKP 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240  81 --LSWISGLIIFLISIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLVSWICGGYLVSDPTLKRFFVLHFIFPFV 154
Cdd:cd00284   103 reLTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPvigiTLVEWLWGGFSVDNATLTRFFALHFLLPFI 182

                         170
                  ....*....|....*...
gi 1439536240 155 ALCIVFIHIFFLHLQGST 172
Cdd:cd00284   183 IAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-170 1.15e-46

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 156.00  E-value: 1.15e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240   1 WNYGFLLGIVFCIQILTGVLLATCYTPEVSYAYYSVQHILRELWSGWCFRYMHATGASFVFILTYLHILRGLNY-SYSY- 78
Cdd:pfam00033  14 YNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYgGFSYp 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240  79 LPLSWISGLIIFLISIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLVSWICGGYLVSDPTLKRFFVLHFIFPFV 154
Cdd:pfam00033  94 RELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPvigdTLVEWIWGSFSVDQATLTRFFSLHFLLPFI 173

                         170
                  ....*....|....*.
gi 1439536240 155 ALCIVFIHIFFLHLQG 170
Cdd:pfam00033 174 LAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 225-320 1.31e-06

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 47.48  E-value: 1.31e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240 225 DRYATPLHIVPEWYFLPFYAMLKTIPNKTAGLLVMLASLQLLFLLAEQRNVTtliQFKLAFgaREYSVPTIWFICSFYAL 304
Cdd:TIGR01156  67 NPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVN---KFQNPF--RRPVATTVFLFGTVVAL 141

                          90
                  ....*....|....*..
gi 1439536240 305 -LWIGCQLPQDIYILYG 320
Cdd:TIGR01156 142 wLGIGATLPIDKSLTLG 158
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-327 7.43e-97

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 290.53  E-value: 7.43e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240   1 WNYGFLLGIVFCIQILTGVLLATCYTPEVSYAYYSVQHILRELWSGWCFRYMHATGASFVFILTYLHILRGLNYSYSYLP 80
Cdd:MTH00156   21 WNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLK 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240  81 LSWISGLIIFLISIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLVSWICGGYLVSDPTLKRFFVLHFIFPFVAL 156
Cdd:MTH00156  101 HTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPylgtDLVQWIWGGFSVDNATLTRFFTFHFLLPFIIL 180

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240 157 CIVFIHIFFLHLQGSTNPLGYDTAL-KIPFYPNLLSLDIKGFNNVLVLFLAQSLFGILPLSHPDNAITVDRYATPLHIVP 235
Cdd:MTH00156  181 AMVMIHLLFLHQTGSNNPLGLNSNIdKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQP 260

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240 236 EWYFLPFYAMLKTIPNKTAGL--LVMLASLQLLFLLAEQRNVTTlIQF----KLAFgareysvptIWFICSFYALLWIGC 309
Cdd:MTH00156  261 EWYFLFAYAILRSIPNKLGGViaLVMSILILMILPFTNKSKFRG-NQFypinKILF---------WIFVNIVILLTWIGA 330

                         330
                  ....*....|....*...
gi 1439536240 310 QLPQDIYILYGRLFIILF 327
Cdd:MTH00156  331 RPVEEPYILTGQILTILY 348
CYTB MTH00145
cytochrome b; Provisional
 1-327 3.08e-93

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 282.18  E-value: 3.08e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240   1 WNYGFLLGIVFCIQILTGVLLATCYTPEVSYAYYSVQHILRELWSGWCFRYMHATGASFVFILTYLHILRGLNYSySYLP 80
Cdd:MTH00145   32 WNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYG-SYLM 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240  81 L-SWISGLIIFLISIVTAFMGYVLPWGQMSFWGATVITNLLYFIPG----LVSWICGGYLVSDPTLKRFFVLHFIFPFVA 155
Cdd:MTH00145  111 QhTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYvgkmLVEWVWGGFSVGNATLKRFFSLHFLLPFVI 190

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240 156 LCIVFIHIFFLHLQGSTNPLGYDTAL-KIPFYPNLLSLDIKGFNNVLVLFLAQSLFGILPLSHPDNAITVDRYATPLHIV 234
Cdd:MTH00145  191 LGLSVLHLLFLHETGSNNPLGLDSDGdKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQ 270

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240 235 PEWYFLPFYAMLKTIPNKTAGLLVMLAslqllfllaeqrnvTTLIQFKLAFGAREYSVPTIW----------FICSFYAL 304
Cdd:MTH00145  271 PEWYFLFAYAILRSIPNKLGGVIALVM--------------SIVILFFLPLLHVGKFRSLSFyplnqvlfwiFVGNFFIL 336

                         330       340
                  ....*....|....*....|...
gi 1439536240 305 LWIGCQLPQDIYILYGRLFIILF 327
Cdd:MTH00145  337 TWIGACPVEEPYETIGQVFTVLY 359
CYTB MTH00191
cytochrome b; Provisional
 1-327 5.40e-90

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 273.33  E-value: 5.40e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240   1 WNYGFLLGIVFCIQILTGVLLATCYTPEVSYAYYSVQHILRELWSGWCFRYMHATGASFVFILTYLHILRGLNYSYSYLP 80
Cdd:MTH00191   28 WNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNK 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240  81 LSWISGLIIFLISIVTAFMGYVLPWGQMSFWGATVITNLL----YFIPGLVSWICGGYLVSDPTLKRFFVLHFIFPFVAL 156
Cdd:MTH00191  108 ETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLsaipYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIA 187

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240 157 CIVFIHIFFLHLQGSTNPLGYDT-ALKIPFYPNLLSLDIKGFNNVLVLFLAQSLFGILPLSHPDNAITVDRYATPLHIVP 235
Cdd:MTH00191  188 ALSLIHLLFLHETGSNNPLGLNSdSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKP 267

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240 236 EWYFLPFYAMLKTIPNKTAGLL-----VMLASLQLLFLLAEQRNVTTLIQFKLAFgareysvptiW-FICSFYALLWIGC 309
Cdd:MTH00191  268 EWYFLFAYAILRSIPNKLGGVLalvmsILVLFLLPLLHTSKQRSNTFRPLTQVVF----------WlWVANFILLTWLGG 337

                         330
                  ....*....|....*...
gi 1439536240 310 QLPQDIYILYGRLFIILF 327
Cdd:MTH00191  338 QPVEDPFILLGQISSFLY 355
CYTB MTH00119
cytochrome b; Provisional
 1-327 1.45e-89

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 272.55  E-value: 1.45e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240   1 WNYGFLLGIVFCIQILTGVLLATCYTPEVSYAYYSVQHILRELWSGWCFRYMHATGASFVFILTYLHILRGLNYSySYL- 79
Cdd:MTH00119   32 WNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYG-SYLy 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240  80 PLSWISGLIIFLISIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLVSWICGGYLVSDPTLKRFFVLHFIFPFVA 155
Cdd:MTH00119  111 KETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPyigqTLVEWIWGGFSVDNPTLTRFFALHFLLPFLI 190

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240 156 LCIVFIHIFFLHLQGSTNPLGYDTAL-KIPFYPNLLSLDIKGFNNVLVLFLAQSLFGILPLSHPDNAITVDRYATPLHIV 234
Cdd:MTH00119  191 AGLTLIHLLFLHETGSNNPLGLNSNTdKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIK 270

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240 235 PEWYFLPFYAMLKTIPNKTAGLL-----VMLASLQLLFLLAEQRNVTTliqfklafgaREYSVPTIW-FICSFYALLWIG 308
Cdd:MTH00119  271 PEWYFLFAYAILRSIPNKLGGVLalaasILILFLMPFLHTSKQRSMTF----------RPLSQLLFWtLVANLLILTWIG 340

                         330       340
                  ....*....|....*....|....
gi 1439536240 309 CQLPQDIYILYGRL-----FIILF 327
Cdd:MTH00119  341 SQPVEHPFIIIGQLasilyFTILL 364
CYTB MTH00016
cytochrome b; Validated
 1-327 6.53e-87

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 265.77  E-value: 6.53e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240   1 WNYGFLLGIVFCIQILTGVLLATCYTPEVSYAYYSVQHILRELWSGWCFRYMHATGASFVFILTYLHILRGLNYSYSYLP 80
Cdd:MTH00016   32 WNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLM 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240  81 LSWISGLIIFLISIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLVSWICGGYLVSDPTLKRFFVLHFIFPFVAL 156
Cdd:MTH00016  112 ETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPyigkMLVQWLWGGFSVDNATLTRFFALHFLLPFVIA 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240 157 CIVFIHIFFLHLQGSTNPLGYDTAL-KIPFYPNLLSLDIKGFNNVLVLFLAQSLFGILPLSHPDNAITVDRYATPLHIVP 235
Cdd:MTH00016  192 ALSMIHLLFLHQTGSNNPLGVNSNSdKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKP 271

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240 236 EWYFLPFYAMLKTIPNKTAGLLVMLASLQLLFLLAeqrnvttlIQFKLAF-GAREYSVPTI---WFICSFYALLWIGCQL 311
Cdd:MTH00016  272 EWYFLWAYAILRSIPNKLGGVVAMFASILILFFLP--------FIFKQKFrGLSFYPLNQIlfwLLVSNFLLLTWIGGRP 343

                         330
                  ....*....|....*.
gi 1439536240 312 PQDIYILYGRLFIILF 327
Cdd:MTH00016  344 VEPPYEFLGQIFTVFY 359
CYTB MTH00100
cytochrome b; Provisional
 1-327 3.30e-85

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 261.50  E-value: 3.30e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240   1 WNYGFLLGIVFCIQILTGVLLATCYTPEVSYAYYSVQHILRELWSGWCFRYMHATGASFVFILTYLHILRGLNY-SYSYL 79
Cdd:MTH00100   31 WNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYgSYLFL 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240  80 PlSWISGLIIFLISIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLVSWICGGYLVSDPTLKRFFVLHFIFPFVA 155
Cdd:MTH00100  111 E-TWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPyigtTLVEWIWGGFSVDKATLTRFFAFHFILPFII 189

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240 156 LCIVFIHIFFLHLQGSTNPLGYDT-ALKIPFYPNLLSLDIKGFNNVLVLFLAQSLFGILPLSHPDNAITVDRYATPLHIV 234
Cdd:MTH00100  190 TALAMVHLLFLHETGSNNPSGIPSdSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIK 269

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240 235 PEWYFLPFYAMLKTIPNKTAGLL-----VMLASLQLLFLLAEQRNVTTliqfklafgaREYSVPTIWF-ICSFYALLWIG 308
Cdd:MTH00100  270 PEWYFLFAYAILRSIPNKLGGVLalllsILILAIIPLLHTSKQRSMMF----------RPLSQCLFWLlVADLLTLTWIG 339

                         330
                  ....*....|....*....
gi 1439536240 309 CQLPQDIYILYGRLFIILF 327
Cdd:MTH00100  340 GQPVEHPFIIIGQLASILY 358
CYTB MTH00131
cytochrome b; Provisional
 1-257 6.95e-85

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 260.74  E-value: 6.95e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240   1 WNYGFLLGIVFCIQILTGVLLATCYTPEVSYAYYSVQHILRELWSGWCFRYMHATGASFVFILTYLHILRGLNY-SYSYL 79
Cdd:MTH00131   31 WNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYgSYLYK 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240  80 PlSWISGLIIFLISIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLVSWICGGYLVSDPTLKRFFVLHFIFPFVA 155
Cdd:MTH00131  111 E-TWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPyvgnTLVQWIWGGFSVDNATLTRFFAFHFLFPFVI 189

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240 156 LCIVFIHIFFLHLQGSTNPLGYDT-ALKIPFYPNLLSLDIKGFNNVLVLFLAQSLFGILPLSHPDNAITVDRYATPLHIV 234
Cdd:MTH00131  190 AAATILHLLFLHETGSNNPLGLNSdADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIK 269

                         250       260
                  ....*....|....*....|...
gi 1439536240 235 PEWYFLPFYAMLKTIPNKTAGLL 257
Cdd:MTH00131  270 PEWYFLFAYAILRSIPNKLGGVL 292
CYTB MTH00074
cytochrome b; Provisional
 1-327 2.42e-80

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 249.21  E-value: 2.42e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240   1 WNYGFLLGIVFCIQILTGVLLATCYTPEVSYAYYSVQHILRELWSGWCFRYMHATGASFVFILTYLHILRGLNYSYSYLP 80
Cdd:MTH00074   32 WNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYK 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240  81 LSWISGLIIFLISIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLVSWICGGYLVSDPTLKRFFVLHFIFPFVAL 156
Cdd:MTH00074  112 ETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPymgdTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIA 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240 157 CIVFIHIFFLHLQGSTNPLGYDTAL-KIPFYPNLLSLDIKGFNNVLVLFLAQSLFGILPLSHPDNAITVDRYATPLHIVP 235
Cdd:MTH00074  192 GASIIHLLFLHETGSNNPTGLNSNPdKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQP 271

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240 236 EWYFLPFYAMLKTIPNKTAGLL-----VMLASLQLLFLLAEQRNVTTLIQFKLAFgareysvptiWFICSFYALL-WIGC 309
Cdd:MTH00074  272 EWYFLFAYAILRSIPNKLGGVLallasILILMLIPMLHTSKQRSLMFRPLTQILF----------WLLVANTLILtWIGG 341

                         330
                  ....*....|....*...
gi 1439536240 310 QLPQDIYILYGRLFIILF 327
Cdd:MTH00074  342 QPVEDPFIEIGQAASILY 359
CYTB MTH00034
cytochrome b; Validated
 1-327 4.92e-79

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 245.77  E-value: 4.92e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240   1 WNYGFLLGIVFCIQILTGVLLATCYTPEVSYAYYSVQHILRELWSGWCFRYMHATGASFVFILTYLHILRGLNYSYSYLP 80
Cdd:MTH00034   31 WNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNI 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240  81 LSWISGLIIFLISIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLVSWICGGYLVSDPTLKRFFVLHFIFPFVAL 156
Cdd:MTH00034  111 ETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPyigtDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIA 190

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240 157 CIVFIHIFFLHLQGSTNPLGYDTAL-KIPFYPNLLSLDIKGFNNVLVLFLAQSLFGILPLSHPDNAITVDRYATPLHIVP 235
Cdd:MTH00034  191 ALSIIHLLFLHQTGSNNPTGLNSNYdKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQP 270

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240 236 EWYFLPFYAMLKTIPNKTAGLL-----VMLASLQLLFLLAEQRNVTTliqfklafgaREYSVPTIW-FICSFYALLWIGC 309
Cdd:MTH00034  271 EWYFLFAYAILRSIPNKLGGVIalvaaILVLFLVPILHTSNNQSSTF----------RPLSQIAFWlLIATFFILTWIGS 340

                         330
                  ....*....|....*...
gi 1439536240 310 QLPQDIYILYGRLFIILF 327
Cdd:MTH00034  341 QPVEYPFILLGQVASVLY 358
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-259 1.13e-74

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 234.68  E-value: 1.13e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240   1 WNYGFLLG----IVFCIQILTGVLLATCYTPEVSYAYYSVQHILRELWSGWCFRYMHATGASFVFILTYLHILRGLNY-S 75
Cdd:COG1290    36 WNFSYWFGelalYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYgA 115

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240  76 YSYlP--LSWISGLIIFLISIVTAFMGYVLPWGQMSFWGATVITNLLYFIPG----LVSWICGGYLVSDPTLKRFFVLH- 148
Cdd:COG1290   116 YKK-PreLNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVigtwLVTWLFGGEFPGDATLNRFFALHv 194

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240 149 FIFPFVALCIVFIHIFFLHLQGSTNPLGYDTALK-----IPFYPNLLSLDIKGFNNVLVLFLAqsLFGILPLSHPDNAIT 223
Cdd:COG1290   195 LLLPALLLALVVLHLWLLHRHGHNNPPGPERKKTekvdgVPFHPYYTVKDGFGFFVFLGVFAL--LAFFFPINPPPNYGP 272

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1439536240 224 VDRYATPLHIVPEWYFLPFYAMLKTIP--NKTAGLLVM 259
Cdd:COG1290   273 ANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAM 310
CYTB MTH00022
cytochrome b; Validated
 1-327 1.52e-74

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 234.21  E-value: 1.52e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240   1 WNYGFLLGIVFCIQILTGVLLATCYTPEVSYAYYSVQHILRELWSGWCFRYMHATGASFVFILTYLHILRGLNY-SYSYL 79
Cdd:MTH00022   30 WNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYgGYLKF 109

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240  80 PLsWISGLIIFLISIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLVSWICGGYLVSDPTLKRFFVLHFIFPFVA 155
Cdd:MTH00022  110 HV-WNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPyvgtDIVQWVWGGFSVSNATLNRFFSLHFLFPFIL 188

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240 156 LCIVFIHIFFLHLQGSTNPLGYDTAL-KIPFYPNLLSLDIKGFNNVLVLFLAQSLFGILPLSHPDNAITVDRYATPLHIV 234
Cdd:MTH00022  189 AFLVIVHLIYLHVDGSNNPIGLNSSVdKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQ 268

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240 235 PEWYFLPFYAMLKTIPNKTAGLLVMLASLQLLFLLAEqrnVTTLIQFKLAFgaREYSVPTIWF-ICSFYALLWIGCQLPQ 313
Cdd:MTH00022  269 PEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPL---LHTSWLRGLTF--RPLGRMAFWFlIVDFILLTWIGSQVVE 343

                         330
                  ....*....|....
gi 1439536240 314 DIYILYGRLFIILF 327
Cdd:MTH00022  344 EPFILIGQLLSFFY 357
CYTB MTH00224
cytochrome b; Provisional
 1-327 1.56e-73

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 231.73  E-value: 1.56e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240   1 WNYGFLLGIVFCIQILTGVLLATCYTPEVSYAYYSVQHILRELWSGWCFRYMHATGASFVFILTYLHILRGLNYSYSYLP 80
Cdd:MTH00224   32 WNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLS 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240  81 LSWISGLIIFLISIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLVSWICGGYLVSDPTLKRFFVLHFIFPFVAL 156
Cdd:MTH00224  112 ETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPyigkDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIM 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240 157 CIVFIHIFFLHLQGSTNPLGYDT-ALKIPFYPNLLSLDIKGFNNVLVLFLAQSLFGILPLSHPDNAITVDRYATPLHIVP 235
Cdd:MTH00224  192 GATILHIMFLHQTGSNNPIGINAdSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKP 271

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240 236 EWYFLPFYAMLKTIPNKTAGLL-----VMLASLQLLFLLAEQRNVTTLIQFKLAFgareysvptiW-FICSFYALLWIGC 309
Cdd:MTH00224  272 EWYFLWMYAILRSIPNKLGGVValfaaILILFILPLTSVMNKRSLPFYPLNQLLF----------WlLVTSWAILTWIGG 341

                         330
                  ....*....|....*...
gi 1439536240 310 QLPQDIYILYGRLFIILF 327
Cdd:MTH00224  342 RPVEDPFEGIGQVFTILY 359
CYTB MTH00086
cytochrome b; Provisional
 1-327 8.34e-72

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 226.36  E-value: 8.34e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240   1 WNYGFLLGIVFCIQILTGVLLATCYTPEVSYAYYSVQHILRELWSGWCFRYMHATGASFVFILTYLHILRGLNYSYSYLP 80
Cdd:MTH00086   20 WNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLK 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240  81 LSWISGLIIFLISIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLVSWICGGYLVSDPTLKRFFVLHFIFPFVAL 156
Cdd:MTH00086  100 KVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPiwgpSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLL 179

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240 157 CIVFIHIFFLHLQGSTNPLG-YDTALKIPFYPNLLSLDIKGFNNVLVLFLAqSLFGILPLSHPDNAITVDRYATPLHIVP 235
Cdd:MTH00086  180 VLVLFHLIFLHSTGSTSSLYcHGDYDKICFGPEYWNKDAYNIIFWLVFIIF-SLFYPFNLGDPEMFIEADPMMSPVHIVP 258

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240 236 EWYFLPFYAMLKTIPNKTAGLLVMLASLQLLFLLAEQRNVTTLIQFKLAFgareysvPTIWFICSFYALLWIGCQLPQDI 315
Cdd:MTH00086  259 EWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNYTSCLNKLNKF-------LVFSFIVVNVILSWLGQCLVEYP 331

                         330
                  ....*....|..
gi 1439536240 316 YILYGRLFIILF 327
Cdd:MTH00086  332 FLFLSQIFSFIY 343
CYTB MTH00053
cytochrome b; Provisional
 1-327 2.63e-69

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 220.73  E-value: 2.63e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240   1 WNYGFLLGIVFCIQILTGVLLATCYTPEVSYAYYSVQHILRELWSGWCFRYMHATGASFVFILTYLHILRGLNYSYSYLP 80
Cdd:MTH00053   32 WNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKI 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240  81 LSWISGLIIFLISIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLVSWICGGYLVSDPTLKRFFVLHFIFPFVAL 156
Cdd:MTH00053  112 IVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPyvgdDIVRWVWGGFSVSNATLNRFYSLHYLLPFILA 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240 157 CIVFIHIFFLHLQGSTNPLGYDTAL-KIPFYPNLLSLDIKGfnNVLVLFLAQSLFGILP--LSHPDNAITVDRYATPLHI 233
Cdd:MTH00053  192 GLALVHLIALHEDGSNNPIGVRSDIdKIPFHYYYVLKDLYG--AVILLIILSIIVFLFPysLGDAENFKQANPLVTPVHI 269

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240 234 VPEWYFLPFYAMLKTIPNKTAGLLVMLASLQLLFLLAeqrnVTTLIQFK-LAFgaREYSVPTIWF-ICSFYALLWIGCQL 311
Cdd:MTH00053  270 KPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLP----YLHKSRFRgLSF--RPLSKILFWFlVGDFFLLTWIGGQP 343

                         330
                  ....*....|....*.
gi 1439536240 312 PQDIYILYGRLFIILF 327
Cdd:MTH00053  344 VEEPYILIGQIASIFY 359
CYTB MTH00033
cytochrome b; Provisional
 1-327 4.72e-63

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 204.79  E-value: 4.72e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240   1 WNYGFLLGIVFCIQILTGVLLATCYTPEVSYAYYSVQHILRELWSGWCFRYMHATGASFVFILTYLHILRGLNYSYSYLP 80
Cdd:MTH00033   28 WNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRV 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240  81 LSWISGLIIFLISIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLVSWICGGYLVSDPTLKRFFVLHFIFPFVAL 156
Cdd:MTH00033  108 LTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPsvggSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLV 187

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240 157 CIVFIHIFFLHLQGSTNPLGY-DTALKIPFYPNLLSLDIKGFnnvLVLFLAQSLFGILP-----LSHPDNAITVDRYATP 230
Cdd:MTH00033  188 GLVLAHLLTLHEKGSNEPLGLvGLSDRTAFHVYFTIKDILGF---LILFGVFVIIGIEPrietlLQDPENFIQANPLVTP 264

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240 231 LHIVPEWYFLPFYAMLKTIPNKTAGLLVMLASLQLLFLL-----AEQRNVTTLIQFKLAFgareysvptiWFIC-SFYAL 304
Cdd:MTH00033  265 VHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMpildrSKIRSLTFNPTGKFFF----------WFIVgDFIIL 334

                         330       340
                  ....*....|....*....|....
gi 1439536240 305 LWIG-CQLPQDIYILYGRLFIILF 327
Cdd:MTH00033  335 TWIGsAPAGADPYVLIGRIATIFY 358
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-172 3.98e-54

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 175.63  E-value: 3.98e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240   1 WNYGFLLGIVFCIQILTGVLLATCYTPEVSYAYYSVQHILRELWSGWCFRYMHATGASFVFILTYLHILRGLNYSYSYLP 80
Cdd:cd00284    23 WNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKKP 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240  81 --LSWISGLIIFLISIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLVSWICGGYLVSDPTLKRFFVLHFIFPFV 154
Cdd:cd00284   103 reLTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPvigiTLVEWLWGGFSVDNATLTRFFALHFLLPFI 182

                         170
                  ....*....|....*...
gi 1439536240 155 ALCIVFIHIFFLHLQGST 172
Cdd:cd00284   183 IAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-170 1.15e-46

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 156.00  E-value: 1.15e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240   1 WNYGFLLGIVFCIQILTGVLLATCYTPEVSYAYYSVQHILRELWSGWCFRYMHATGASFVFILTYLHILRGLNY-SYSY- 78
Cdd:pfam00033  14 YNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYgGFSYp 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240  79 LPLSWISGLIIFLISIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLVSWICGGYLVSDPTLKRFFVLHFIFPFV 154
Cdd:pfam00033  94 RELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPvigdTLVEWIWGSFSVDQATLTRFFSLHFLLPFI 173

                         170
                  ....*....|....*.
gi 1439536240 155 ALCIVFIHIFFLHLQG 170
Cdd:pfam00033 174 LAILMLLHLLFLHETG 189
CYTB MTH00046
cytochrome b; Validated
 1-257 4.02e-45

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 157.07  E-value: 4.02e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240   1 WNYGFLLGIVFCIQILTGVLLATCYTPEVSYAYYSVQHILRELWSGWCFRYMHATGASFVFILTYLHILRGLNYSYSYLP 80
Cdd:MTH00046   22 WCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKK 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240  81 LSWISGLIIFLISIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLVSWICGGYLVSDPTLKRFFVLHFIFPFVAL 156
Cdd:MTH00046  102 GVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPivgsLVYKYIVGGFSVTGVTLVRVFSVHICLGFVIL 181

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240 157 CIVFIHIFFLHLQGSTNPLgydtalkipFYPNLLSlDIKGFN------NVLVLFLAQSLFGILPLSHPDNAITVDRY--- 227
Cdd:MTH00046  182 GLMVVHLFYLHKSGSSNPL---------FSSNGYS-DVVYFHsyftvkDLFLFMVVCSLLVFWLFVSPDLVLDIEAYlea 251

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1439536240 228 ---ATPLHIVPEWYFLPFYAMLKTIPNKTAGLL 257
Cdd:MTH00046  252 dplVTPVSIKPEWYFLAFYAMLRSINSKIGGLV 284
PRK03735 PRK03735
cytochrome b6; Provisional
 3-175 2.26e-24

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 98.63  E-value: 2.26e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240   3 YGFLLGIVFCIQILTGVLLATCYTPEVSYAYYSVQHILRELWSGWCFRYMHATGASFVFILTYLHILRgLNYSYSY---L 79
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLR-VFFTGGYkkpR 122

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240  80 PLSWISGLIIFLISIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLVSWICGGYLVSDPTLKRFFVLH-FIFPFV 154
Cdd:PRK03735  123 ELNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPvigdFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWA 202

                         170       180
                  ....*....|....*....|.
gi 1439536240 155 ALCIVFIHIFFLHLQGSTNPL 175
Cdd:PRK03735  203 LAVLMLAHFLMIRKQGISGPL 223
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
58-218 4.50e-21

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 88.45  E-value: 4.50e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240  58 SFVFILTYLHILRGLnYSYSYL---PLSWISGLIIFLISIVTAFMGYVLPWGQMSFWGATVITNLLYFIPG----LVSWI 130
Cdd:pfam13631   1 YIFIAAIYVHMLRIF-FTGAYRkprELNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVvgtwLVWLL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240 131 CGGYLVSDPTLKRFFVLHF-IFPFVALCIVFIHIFFLHLQGSTNPLG-YDTALKIPFYPNLLSLDIKGFNNVLVLFLAQS 208
Cdd:pfam13631  80 FGGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGtEKNVVGVPFWPVFAVKMLLFFLITVALLIGLA 159

                         170
                  ....*....|
gi 1439536240 209 LFGILPLSHP 218
Cdd:pfam13631 160 QINPIWLGGP 169
petB CHL00070
cytochrome b6
 11-175 4.69e-19

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 84.00  E-value: 4.69e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240  11 FCIQILTGVLLATCYTPEVSYAYYSVQHILRELWSGWCFRYMHATGASFVFILTYLHILRGLNYSYSYLP--LSWISGLI 88
Cdd:CHL00070   44 FLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPreLTWVTGVV 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240  89 IFLISIVTAFMGYVLPWGQMSFWGATVITNLLYFIPG----LVSWICGGYLVSDPTLKRFFVLH-FIFPFVALCIVFIHI 163
Cdd:CHL00070  124 LAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVigspLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHF 203

                         170
                  ....*....|..
gi 1439536240 164 FFLHLQGSTNPL 175
Cdd:CHL00070  204 LMIRKQGISGPL 215
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
229-327 3.52e-17

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 75.59  E-value: 3.52e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240 229 TPLHIVPEWYFLPFYAMLKTIPNKTAGLLVMLASLQLLFLLAE-QRNVTTLIQFKLAFgareySVPTIWFICSFYALLWI 307
Cdd:pfam00032   7 TPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWlDRSPVRSIRYRPLF-----KIFFWLFVVDFVVLGWL 81

                          90       100
                  ....*....|....*....|
gi 1439536240 308 GCQLPQDIYILYGRLFIILF 327
Cdd:pfam00032  82 GKQPPTGPYTLLGQIATVYY 101
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 182-323 7.96e-16

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 73.45  E-value: 7.96e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240 182 KIPFYPNLLSLDIKGFNNVLVLFLAQSLFGILPLSHPDNAITVDRYATPLHIVPEWYFLPFYAMLKTIPNKTAGLLVMLA 261
Cdd:cd00290    11 KISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPNKLLGVLAMAA 90

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1439536240 262 SLQLLFLLAEQRNVTTLIQFKLAfgareYSVPTIWFICSFYALLWIGCQLPQDIYILYGRLF 323
Cdd:cd00290    91 SILSLFLVPFLENSNKRSQFRPL-----RPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 198-259 6.65e-08

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 51.33  E-value: 6.65e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1439536240 198 NNVLVLF---LAQSLFGILPLSHPDNAIT---VDRYATPLHIVPEWYFLPFYAMLKTIPNKTAGLLVM 259
Cdd:COG5679    35 NDLLYIFpvvILGTIALCIGLAVLDPAMMgepADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMM 102
petD CHL00058
cytochrome b6/f complex subunit IV
 225-259 8.62e-08

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 51.16  E-value: 8.62e-08
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1439536240 225 DRYATPLHIVPEWYFLPFYAMLKTIPNKTAGLLVM 259
Cdd:CHL00058   67 DPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLM 101
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 225-320 1.31e-06

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 47.48  E-value: 1.31e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439536240 225 DRYATPLHIVPEWYFLPFYAMLKTIPNKTAGLLVMLASLQLLFLLAEQRNVTtliQFKLAFgaREYSVPTIWFICSFYAL 304
Cdd:TIGR01156  67 NPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVN---KFQNPF--RRPVATTVFLFGTVVAL 141

                          90
                  ....*....|....*..
gi 1439536240 305 -LWIGCQLPQDIYILYG 320
Cdd:TIGR01156 142 wLGIGATLPIDKSLTLG 158
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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