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Conserved domains on  [gi|1438971263|gb|AXI25529|]
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ferredoxin [Methanofervidicoccus sp. A16]

Protein Classification

ferredoxin family protein( domain architecture ID 11439153)

ferredoxin-like protein that may be a iron-sulfur cluster-containing protein which mediates electron transfer

CATH:  3.30.70.20
Gene Ontology:  GO:0046872|GO:0009055|GO:0051536
PubMed:  3078742|2185975

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PreA COG1146
NAD-dependent dihydropyrimidine dehydrogenase, PreA subunit [Nucleotide transport and ...
 1-64 1.09e-12

NAD-dependent dihydropyrimidine dehydrogenase, PreA subunit [Nucleotide transport and metabolism];


:

Pssm-ID: 440761 [Multi-domain]  Cd Length: 67  Bit Score: 56.26  E-value: 1.09e-12
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1438971263  1 MKIEINENYCKGCDICIFICPRDVFVKSEKLNKkgiypPIPKYPENCTKCQLCVLQCPDQAISL 64
Cdd:COG1146    1 MMPVIDTDKCIGCGACVEVCPVDVLELDEEGKK-----ALVINPEECIGCGACELVCPVGAITV 59
 
Name Accession Description Interval E-value
PreA COG1146
NAD-dependent dihydropyrimidine dehydrogenase, PreA subunit [Nucleotide transport and ...
 1-64 1.09e-12

NAD-dependent dihydropyrimidine dehydrogenase, PreA subunit [Nucleotide transport and metabolism];


Pssm-ID: 440761 [Multi-domain]  Cd Length: 67  Bit Score: 56.26  E-value: 1.09e-12
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1438971263  1 MKIEINENYCKGCDICIFICPRDVFVKSEKLNKkgiypPIPKYPENCTKCQLCVLQCPDQAISL 64
Cdd:COG1146    1 MMPVIDTDKCIGCGACVEVCPVDVLELDEEGKK-----ALVINPEECIGCGACELVCPVGAITV 59
oorD PRK09626
2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
 5-66 1.22e-07

2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed


Pssm-ID: 236597 [Multi-domain]  Cd Length: 103  Bit Score: 44.33  E-value: 1.22e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1438971263   5 INENYCKGCDICIFICPRDVFvkSEKLNKKGIYPPIPK--YPENCTKCQLCVLQCPDQAISLLD 66
Cdd:PRK09626   13 VDESRCKACDICVSVCPAGVL--AMRIDPHAVLGKMIKvvHPESCIGCRECELHCPDFAIYVAD 74
RNAP_D cd07030
D subunit of Archaeal RNA polymerase; The D subunit of archaeal RNA polymerase (RNAP) is ...
 2-62 2.34e-06

D subunit of Archaeal RNA polymerase; The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit which is involved in dimerization, and the other is an inserted beta sheet subdomain. The assembly of the two largest archaeal RNAP subunits that provide most of the enzyme's catalytic functions depends on the presence of the archaeal D/L heterodimer.


Pssm-ID: 132908 [Multi-domain]  Cd Length: 259  Bit Score: 42.25  E-value: 2.34e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1438971263   2 KIEINENyCKGCDICIFICPRDVFVKSEKLNKKGiyppipkYPENCTKCQLCVLQCPDQAI 62
Cdd:cd07030   164 VIEIDED-CDGCGKCVEECPRGVLELEEGKVVVE-------DLEDCSLCKLCERACDAGAI 216
rnfB TIGR01944
electron transport complex, RnfABCDGE type, B subunit; The six subunit complex RnfABCDGE in ...
 5-64 5.98e-05

electron transport complex, RnfABCDGE type, B subunit; The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit. [Energy metabolism, Electron transport]


Pssm-ID: 273887 [Multi-domain]  Cd Length: 165  Bit Score: 38.24  E-value: 5.98e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1438971263   5 INENYCKGCDICIFICPRDVFVKSEKLNKKGIyppipkyPENCTKCQLCVLQCPDQAISL 64
Cdd:TIGR01944 110 IDEDNCIGCTKCIQACPVDAIVGAAKAMHTVI-------ADECTGCDLCVEPCPTDCIEM 162
Fer4_9 pfam13187
4Fe-4S dicluster domain;
9-62 2.38e-03

4Fe-4S dicluster domain;


Pssm-ID: 463801 [Multi-domain]  Cd Length: 50  Bit Score: 32.14  E-value: 2.38e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 1438971263  9 YCKGCDICIFICPRDVFVKSEKlnkkGIYPPIPKYPENCTKCQLCVLQCPDQAI 62
Cdd:pfam13187  1 KCTGCGACVAACPAGAIVPDLV----GQTIRGDIAGLACIGCGACVDACPRGAI 50
 
Name Accession Description Interval E-value
PreA COG1146
NAD-dependent dihydropyrimidine dehydrogenase, PreA subunit [Nucleotide transport and ...
 1-64 1.09e-12

NAD-dependent dihydropyrimidine dehydrogenase, PreA subunit [Nucleotide transport and metabolism];


Pssm-ID: 440761 [Multi-domain]  Cd Length: 67  Bit Score: 56.26  E-value: 1.09e-12
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1438971263  1 MKIEINENYCKGCDICIFICPRDVFVKSEKLNKkgiypPIPKYPENCTKCQLCVLQCPDQAISL 64
Cdd:COG1146    1 MMPVIDTDKCIGCGACVEVCPVDVLELDEEGKK-----ALVINPEECIGCGACELVCPVGAITV 59
IorA COG4231
TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit [Energy production and ...
 1-64 5.86e-08

TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit [Energy production and conversion];


Pssm-ID: 443375 [Multi-domain]  Cd Length: 76  Bit Score: 44.65  E-value: 5.86e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1438971263  1 MKIEINENYCKGCDICIFICPRDVFVKSEKlnkkgiypPIPKYPENCTKCQLCVLQCPDQAISL 64
Cdd:COG4231   15 MRYVIDEDKCTGCGACVKVCPADAIEEGDG--------KAVIDPDLCIGCGSCVQVCPVDAIKL 70
oorD PRK09626
2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
 5-66 1.22e-07

2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed


Pssm-ID: 236597 [Multi-domain]  Cd Length: 103  Bit Score: 44.33  E-value: 1.22e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1438971263   5 INENYCKGCDICIFICPRDVFvkSEKLNKKGIYPPIPK--YPENCTKCQLCVLQCPDQAISLLD 66
Cdd:PRK09626   13 VDESRCKACDICVSVCPAGVL--AMRIDPHAVLGKMIKvvHPESCIGCRECELHCPDFAIYVAD 74
PRK06991 PRK06991
electron transport complex subunit RsxB;
5-65 5.41e-07

electron transport complex subunit RsxB;


Pssm-ID: 235903 [Multi-domain]  Cd Length: 270  Bit Score: 44.40  E-value: 5.41e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1438971263   5 INENYCKGCDICIFICPRDVFVKSEKLNKKGIyppipkyPENCTKCQLCVLQCPDQAISLL 65
Cdd:PRK06991   82 IDEQLCIGCTLCMQACPVDAIVGAPKQMHTVL-------ADLCTGCDLCVPPCPVDCIDMV 135
PRK00783 PRK00783
DNA-directed RNA polymerase subunit D; Provisional
 2-64 8.42e-07

DNA-directed RNA polymerase subunit D; Provisional


Pssm-ID: 234837 [Multi-domain]  Cd Length: 263  Bit Score: 43.72  E-value: 8.42e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1438971263   2 KIEINENyCKGCDICIFICPRDVFvkSEKLNKKGIyppipKYPENCTKCQLCVLQCPDQAISL 64
Cdd:PRK00783  164 RIEVSED-CDECEKCVEACPRGVL--ELKEGKLVV-----TDLLNCSLCKLCERACPGKAIRV 218
COG1149 COG1149
MinD superfamily P-loop ATPase, contains an inserted ferredoxin domain [General function ...
 1-64 2.10e-06

MinD superfamily P-loop ATPase, contains an inserted ferredoxin domain [General function prediction only];


Pssm-ID: 440763 [Multi-domain]  Cd Length: 68  Bit Score: 40.48  E-value: 2.10e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1438971263  1 MKIEINENYCKGCDICIFICPRDVFVKseklnKKGIYPPIpkYPENCTKCQLCVLQCPDQAISL 64
Cdd:COG1149    4 KIPVIDEEKCIGCGLCVEVCPEGAIKL-----DDGGAPVV--DPDLCTGCGACVGVCPTGAITL 60
RNAP_D cd07030
D subunit of Archaeal RNA polymerase; The D subunit of archaeal RNA polymerase (RNAP) is ...
 2-62 2.34e-06

D subunit of Archaeal RNA polymerase; The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit which is involved in dimerization, and the other is an inserted beta sheet subdomain. The assembly of the two largest archaeal RNAP subunits that provide most of the enzyme's catalytic functions depends on the presence of the archaeal D/L heterodimer.


Pssm-ID: 132908 [Multi-domain]  Cd Length: 259  Bit Score: 42.25  E-value: 2.34e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1438971263   2 KIEINENyCKGCDICIFICPRDVFVKSEKLNKKGiyppipkYPENCTKCQLCVLQCPDQAI 62
Cdd:cd07030   164 VIEIDED-CDGCGKCVEECPRGVLELEEGKVVVE-------DLEDCSLCKLCERACDAGAI 216
NapF COG1145
Ferredoxin [Energy production and conversion];
2-64 4.35e-06

Ferredoxin [Energy production and conversion];


Pssm-ID: 440760 [Multi-domain]  Cd Length: 238  Bit Score: 42.02  E-value: 4.35e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1438971263   2 KIEINENYCKGCDICIFICPRDVFVKSEKlnkkgiYPPIPKYPENCTKCQLCVLQCPDQAISL 64
Cdd:COG1145   176 KAVIDAEKCIGCGLCVKVCPTGAIRLKDG------KPQIVVDPDKCIGCGACVKVCPVGAISL 232
NuoI COG1143
Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy ...
 10-64 2.11e-05

Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]; Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440758 [Multi-domain]  Cd Length: 66  Bit Score: 37.80  E-value: 2.11e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 1438971263 10 CKGCDICIFICPRDVFvkseKLNKKGIYPPIPKYPENCTKCQLCVLQCPDQAISL 64
Cdd:COG1143    4 CIGCGLCVRVCPVDAI----TIEDGEPGKVYVIDPDKCIGCGLCVEVCPTGAISM 54
PorD COG1144
Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta ...
 1-64 2.90e-05

Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta subunit [Energy production and conversion]; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta subunit is part of the Pathway/BioSystem: Pyruvate oxidation


Pssm-ID: 440759 [Multi-domain]  Cd Length: 84  Bit Score: 37.72  E-value: 2.90e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1438971263  1 MKIEINENYCKGCDICIFICPRDVFVKSEKlnkkGIYPPIPKYpenCTKCQLCVLQCPDQAISL 64
Cdd:COG1144   23 ERPVVDEDKCIGCGLCWIVCPDGAIRVDDG----KYYGIDYDY---CKGCGICAEVCPVKAIEM 79
PRK07118 PRK07118
Fe-S cluster domain-containing protein;
3-66 5.41e-05

Fe-S cluster domain-containing protein;


Pssm-ID: 235941 [Multi-domain]  Cd Length: 280  Bit Score: 38.76  E-value: 5.41e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1438971263   3 IEINENYCKGCDICIFICPRDVFV---KSEKL----NKKGIYPPIPKYPEN-CTKCQLCVLQCPDQAISLLD 66
Cdd:PRK07118  163 PVVDEDKCTGCGACVKACPRNVIElipKSARVfvacNSKDKGKAVKKVCEVgCIGCGKCVKACPAGAITMEN 234
rnfB TIGR01944
electron transport complex, RnfABCDGE type, B subunit; The six subunit complex RnfABCDGE in ...
 5-64 5.98e-05

electron transport complex, RnfABCDGE type, B subunit; The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit. [Energy metabolism, Electron transport]


Pssm-ID: 273887 [Multi-domain]  Cd Length: 165  Bit Score: 38.24  E-value: 5.98e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1438971263   5 INENYCKGCDICIFICPRDVFVKSEKLNKKGIyppipkyPENCTKCQLCVLQCPDQAISL 64
Cdd:TIGR01944 110 IDEDNCIGCTKCIQACPVDAIVGAAKAMHTVI-------ADECTGCDLCVEPCPTDCIEM 162
PRK05113 PRK05113
electron transport complex protein RnfB; Provisional
 5-65 6.49e-05

electron transport complex protein RnfB; Provisional


Pssm-ID: 235347 [Multi-domain]  Cd Length: 191  Bit Score: 38.39  E-value: 6.49e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1438971263   5 INENYCKGCDICIFICPRDVFVKSEKLNKKGIyppipkyPENCTKCQLCVLQCPDQAISLL 65
Cdd:PRK05113  111 IDEDNCIGCTKCIQACPVDAIVGATKAMHTVI-------SDLCTGCDLCVAPCPTDCIEMI 164
PRK13795 PRK13795
hypothetical protein; Provisional
 10-58 6.87e-05

hypothetical protein; Provisional


Pssm-ID: 237510 [Multi-domain]  Cd Length: 636  Bit Score: 38.44  E-value: 6.87e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1438971263  10 CKGCDICIFICPrdvfVKSEKLNKKGIYppIPKYPENCTKCQLCVLQCP 58
Cdd:PRK13795  583 CVGCGVCVGACP----TGAIRIEEGKRK--ISVDEEKCIHCGKCTEVCP 625
HdrA COG1148
Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];
4-64 1.22e-04

Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];


Pssm-ID: 440762 [Multi-domain]  Cd Length: 563  Bit Score: 37.53  E-value: 1.22e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1438971263   4 EINENYCKGCDICIFICPRDVFvkseKLNKKGIYPPIpkyPENCTKCQLCVLQCPDQAISL 64
Cdd:COG1148   492 EVDPEKCTGCGRCVEVCPYGAI----SIDEKGVAEVN---PALCKGCGTCAAACPSGAISL 545
COG2768 COG2768
Uncharacterized Fe-S cluster protein [Function unknown];
1-64 1.41e-04

Uncharacterized Fe-S cluster protein [Function unknown];


Pssm-ID: 442050 [Multi-domain]  Cd Length: 74  Bit Score: 35.86  E-value: 1.41e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1438971263  1 MKIEINENYCKGCDICIFICPRDVFVKSEKlnkkgiypPIPKYPENCTKCQLCVLQCPDQAISL 64
Cdd:COG2768    4 GKPYVDEEKCIGCGACVKVCPVGAISIEDG--------KAVIDPEKCIGCGACIEVCPVGAIKI 59
DsrA COG2221
Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Inorganic ion ...
 2-63 1.68e-04

Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Inorganic ion transport and metabolism];


Pssm-ID: 441823 [Multi-domain]  Cd Length: 69  Bit Score: 35.41  E-value: 1.68e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1438971263  2 KIEINENYCKGCDICIFICPRDVFVKSEKlnkkgiypPIPKYPENCTKCQLCVLQCPDQAIS 63
Cdd:COG2221    9 PPKIDEEKCIGCGLCVAVCPTGAISLDDG--------KLVIDEEKCIGCGACIRVCPTGAIK 62
PsaC COG5703
Photosystem I reaction center iron-sulfur center subunit VII, PsaC [Energy production and ...
 10-62 3.07e-04

Photosystem I reaction center iron-sulfur center subunit VII, PsaC [Energy production and conversion]; Photosystem I reaction center iron-sulfur center subunit VII, PsaC is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444413 [Multi-domain]  Cd Length: 82  Bit Score: 35.18  E-value: 3.07e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 1438971263 10 CKGCDICIFICPRDVFVKSEKLNKKGIYPPIPKYPENCTKCQLCVLQCPDQAI 62
Cdd:COG5703   11 CIGCTQCVRACPTDVLEMVPWDGCKAGQIAASPRTEDCVGCKRCETACPTDFL 63
Nar1 COG4624
Iron only hydrogenase large subunit, C-terminal domain [Energy production and conversion];
2-63 4.47e-04

Iron only hydrogenase large subunit, C-terminal domain [Energy production and conversion];


Pssm-ID: 443663 [Multi-domain]  Cd Length: 450  Bit Score: 36.16  E-value: 4.47e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1438971263   2 KIEINENYCKGCDICIFICPrdvfVKSEKLNKKGIyppiPKYPENCTKCQLCVLQCPDQAIS 63
Cdd:COG4624    85 SIIRDKEKCKNCYPCVRACP----VKAIKVDDGKA----EIDEEKCISCGQCVAVCPFGAIT 138
PRK08348 PRK08348
NADH-plastoquinone oxidoreductase subunit; Provisional
 2-66 5.63e-04

NADH-plastoquinone oxidoreductase subunit; Provisional


Pssm-ID: 181399 [Multi-domain]  Cd Length: 120  Bit Score: 35.20  E-value: 5.63e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1438971263   2 KIEINENYCKGCDICIFICPRDVFVKSEKLNKKGIyppipkYPENCTKCQLCVLQCPDQAISLLD 66
Cdd:PRK08348   36 KILYDVDKCVGCRMCVTVCPAGVFVYLPEIRKVAL------WTGRCVFCGQCVDVCPTGALQMSD 94
NapH COG0348
Polyferredoxin NapH [Energy production and conversion];
1-64 1.50e-03

Polyferredoxin NapH [Energy production and conversion];


Pssm-ID: 440117 [Multi-domain]  Cd Length: 263  Bit Score: 34.65  E-value: 1.50e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1438971263   1 MKIEINENYCKGCDICIFICPRDVFVKSEKLNkkgiyppipkyPENCTKCQLCVLQCPDQAISL 64
Cdd:COG0348   203 LRVRYDRGDCIDCGLCVKVCPMGIDIRKGEIN-----------QSECINCGRCIDACPKDAIRF 255
PRK12809 PRK12809
putative oxidoreductase Fe-S binding subunit; Reviewed
 3-66 1.62e-03

putative oxidoreductase Fe-S binding subunit; Reviewed


Pssm-ID: 183762 [Multi-domain]  Cd Length: 639  Bit Score: 34.62  E-value: 1.62e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1438971263   3 IEINENYCKGCDICIFICPRDVFVKSEKLNKKgiyppipkypenCTKC-------QLCVLQCPDQAISLLD 66
Cdd:PRK12809   80 VQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK------------CDLCnqrssgtQACIEVCPTQALRLMD 138
MtMvhB_like cd10549
Uncharacterized polyferredoxin-like protein; This family contains uncharacterized ...
 1-64 1.70e-03

Uncharacterized polyferredoxin-like protein; This family contains uncharacterized polyferredoxin protein similar to Methanobacterium thermoautotrophicum MvhB. The mvhB is a gene of the methylviologen-reducing hydrogenase operon. It is predicted to contain 12 [4Fe-4S] clusters, and was therefore suggested to be a polyferredoxin. As a subfamily of the beta subunit of the DMSO Reductase (DMSOR) family, it is predicted to function as electron carrier in the reducing reaction.


Pssm-ID: 319871 [Multi-domain]  Cd Length: 128  Bit Score: 33.91  E-value: 1.70e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1438971263   1 MKIEINENYCKGCDICIFICPRDVFVKSEKLNKKGIyppipkyPENCTKCQLCVLQCPDQAISL 64
Cdd:cd10549    71 KEAEIDEEKCIGCGLCVKVCPVDAITLEDELEIVID-------KEKCIGCGICAEVCPVNAIKL 127
Fer COG1141
Ferredoxin [Energy production and conversion];
1-66 1.75e-03

Ferredoxin [Energy production and conversion];


Pssm-ID: 440756 [Multi-domain]  Cd Length: 63  Bit Score: 32.93  E-value: 1.75e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1438971263  1 MKIEINENYCKGCDICIFICPrDVFvkseKLNKKG----IYPPIPKYPENCtkCQLCVLQCPDQAISLLD 66
Cdd:COG1141    1 MKVTVDRDTCIGCGLCVALAP-EVF----ELDDDGkavvLDEEVPEELEED--VREAADACPVGAITVEE 63
DMSOR_beta_like cd16372
uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the ...
 5-66 1.94e-03

uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319894 [Multi-domain]  Cd Length: 125  Bit Score: 33.85  E-value: 1.94e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1438971263   5 INENYCKGCDICIFICPRDVFVKSEKLNKkgiyppipkyPENCTKCQLCVLQCPDQAISLLD 66
Cdd:cd16372    74 INKKLCVGCLMCVGFCPEGAMFKHEDYPE----------PFKCIACGICVKACPTGALELVE 125
Fer4_9 pfam13187
4Fe-4S dicluster domain;
9-62 2.38e-03

4Fe-4S dicluster domain;


Pssm-ID: 463801 [Multi-domain]  Cd Length: 50  Bit Score: 32.14  E-value: 2.38e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 1438971263  9 YCKGCDICIFICPRDVFVKSEKlnkkGIYPPIPKYPENCTKCQLCVLQCPDQAI 62
Cdd:pfam13187  1 KCTGCGACVAACPAGAIVPDLV----GQTIRGDIAGLACIGCGACVDACPRGAI 50
PRK13409 PRK13409
ribosome biogenesis/translation initiation ATPase RLI;
5-63 2.84e-03

ribosome biogenesis/translation initiation ATPase RLI;


Pssm-ID: 184037 [Multi-domain]  Cd Length: 590  Bit Score: 33.63  E-value: 2.84e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1438971263   5 INENYCKG--CDI-CIFICPR-----DVFVKSEKLNKkgiyPPIpkYPENCTKCQLCVLQCPDQAIS 63
Cdd:PRK13409    7 VDYDRCQPkkCNYeCIKYCPVvrtgeETIEIDEDDGK----PVI--SEELCIGCGICVKKCPFDAIS 67
PRK08764 PRK08764
Rnf electron transport complex subunit RnfB;
5-64 2.93e-03

Rnf electron transport complex subunit RnfB;


Pssm-ID: 181550 [Multi-domain]  Cd Length: 135  Bit Score: 33.36  E-value: 2.93e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1438971263   5 INENYCKGCDICIFICPRDVFVKSEKLNKKGIYPPipkypenCTKCQLCVLQCPDQAISL 64
Cdd:PRK08764   82 IVEADCIGCTKCIQACPVDAIVGGAKHMHTVIAPL-------CTGCELCVPACPVDCIEL 134
PRK12771 PRK12771
putative glutamate synthase (NADPH) small subunit; Provisional
 10-62 5.55e-03

putative glutamate synthase (NADPH) small subunit; Provisional


Pssm-ID: 237198 [Multi-domain]  Cd Length: 564  Bit Score: 32.92  E-value: 5.55e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1438971263  10 CKGCDICIFICPRDVFVKseklnkkgiYPPIPKYPENCTKCQ---LCVLQCPDQAI 62
Cdd:PRK12771  512 CFECDNCYGACPQDAIIK---------LGPGRRYHFDYDKCTgchICADVCPCGAI 558
PorD COG1144
Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta ...
 44-66 6.50e-03

Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta subunit [Energy production and conversion]; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta subunit is part of the Pathway/BioSystem: Pyruvate oxidation


Pssm-ID: 440759 [Multi-domain]  Cd Length: 84  Bit Score: 31.56  E-value: 6.50e-03
                         10        20
                 ....*....|....*....|...
gi 1438971263 44 PENCTKCQLCVLQCPDQAISLLD 66
Cdd:COG1144   29 EDKCIGCGLCWIVCPDGAIRVDD 51
Rli1 COG1245
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ...
 5-63 7.14e-03

Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];


Pssm-ID: 440858 [Multi-domain]  Cd Length: 592  Bit Score: 32.83  E-value: 7.14e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1438971263   5 INENYCKG--CDI-CIFICPR-----DVFVKSEKLNKkgiyPPIpkYPENCTKCQLCVLQCPDQAIS 63
Cdd:COG1245     7 VDRDRCQPkkCNYeCIKYCPVnrtgkEAIEIDEDDGK----PVI--SEELCIGCGICVKKCPFDAIS 67
HdrA COG1148
Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];
25-64 9.28e-03

Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];


Pssm-ID: 440762 [Multi-domain]  Cd Length: 563  Bit Score: 32.52  E-value: 9.28e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1438971263  25 FVKSEKLNKKGIYPPIpkYPENCTKCQLCVLQCPDQAISL 64
Cdd:COG1148   478 LLSKGELGVEPSVAEV--DPEKCTGCGRCVEVCPYGAISI 515
Fer4_7 pfam12838
4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to ...
 10-58 9.40e-03

4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.


Pssm-ID: 463724 [Multi-domain]  Cd Length: 51  Bit Score: 30.57  E-value: 9.40e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 1438971263 10 CKGCDICIFICPRDVFVKSEKLNKKGIYPPIPKyPENCTKCQLCVLQCP 58
Cdd:pfam12838  1 CIGCGACVAACPVGAITLDEVGEKKGTKTVVID-PERCVGCGACVAVCP 48
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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