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Conserved domains on  [gi|1438323648|emb|SUG17797|]
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xanthine/uracil permease family protein [Salmonella enterica subsp. arizonae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HCO3_cotransp super family cl46638
HCO3- transporter family; This family contains Band 3 anion exchange proteins that exchange ...
 1-65 1.37e-21

HCO3- transporter family; This family contains Band 3 anion exchange proteins that exchange CL-/HCO3-. This family also includes cotransporters of Na+/HCO3-.


The actual alignment was detected with superfamily member COG2252:

Pssm-ID: 480978  Cd Length: 435  Bit Score: 86.25  E-value: 1.37e-21
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1438323648   1 MDTSAVFVTTCLIGGFRQYSDGPVANLPVALAPAMGLNAFFAFVVVQAMGLPWQVGMGAIFWGAI 65
Cdd:COG2252    48 MDFGAVFTATALAAAIGTLLMGLYANYPFALAPGMGLNAFFAYTVVLGMGVSWQTALGAVFISGI 112
 
Name Accession Description Interval E-value
NCS2 COG2252
Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 ( NCS2) ...
 1-65 1.37e-21

Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 ( NCS2) family [Nucleotide transport and metabolism];


Pssm-ID: 441853  Cd Length: 435  Bit Score: 86.25  E-value: 1.37e-21
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1438323648   1 MDTSAVFVTTCLIGGFRQYSDGPVANLPVALAPAMGLNAFFAFVVVQAMGLPWQVGMGAIFWGAI 65
Cdd:COG2252    48 MDFGAVFTATALAAAIGTLLMGLYANYPFALAPGMGLNAFFAYTVVLGMGVSWQTALGAVFISGI 112
 
Name Accession Description Interval E-value
NCS2 COG2252
Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 ( NCS2) ...
 1-65 1.37e-21

Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 ( NCS2) family [Nucleotide transport and metabolism];


Pssm-ID: 441853  Cd Length: 435  Bit Score: 86.25  E-value: 1.37e-21
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1438323648   1 MDTSAVFVTTCLIGGFRQYSDGPVANLPVALAPAMGLNAFFAFVVVQAMGLPWQVGMGAIFWGAI 65
Cdd:COG2252    48 MDFGAVFTATALAAAIGTLLMGLYANYPFALAPGMGLNAFFAYTVVLGMGVSWQTALGAVFISGI 112
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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