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Conserved domains on  [gi|1436568781|emb|STO00123|]
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Putative arginine/ornithine antiporter [Slackia exigua]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
arg_ornith_anti super family cl30103
arginine-ornithine antiporter; Members of this protein family are the arginine/ornithine ...
 4-477 3.43e-119

arginine-ornithine antiporter; Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2. [Transport and binding proteins, Amino acids, peptides and amines]


The actual alignment was detected with superfamily member TIGR03810:

Pssm-ID: 163522  Cd Length: 468  Bit Score: 357.05  E-value: 3.43e-119
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781   4 KKLGLFPLVAAILAGMIGSGVYDIGYQLASVASPGGAILAWIICFVGMLFLVLSLQNLLEKEPEGD-GIYIYARKVAGPI 82
Cdd:TIGR03810   1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDgGVYSYAKAGFGPF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781  83 GEFMSAWGYWVSGWIGNIAFATIMMIALGTFFPALGDtGASWPAIAIASIVLWGIFFFIRQGVESAMMINSIITILKIVP 162
Cdd:TIGR03810  81 MGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGG-GNNPPSIIGASVLLWCVHFLVLRGVEGAAFINTITTIAKLVP 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781 163 LAVFVIVTVTSFDFSVFTQDFWtnfagnaAAAGEGFSLESVFSQATNSMLSIIWLFMGIEYAALMSSRAKSKSIASKASI 242
Cdd:TIGR03810 160 LFVFIVIGIFAFKGDTFTNDFW-------GNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEKRSDVGKATV 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781 243 LGLLVGTLLLFVMSMLPYGLYSADELVALGEPCVGKVLVDFIGPVGAGFVGGAMILSIFGSWINYTYGPTESLQTLSEHG 322
Cdd:TIGR03810 233 IGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAKDK 312

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781 323 LLTERWGRKNAHGVASFSLLITTVLCQLLLITMHFTEDAYNFGFSLSGSAILVTWTFIVLYNFVRAVKNPHEKGRTKNLV 402
Cdd:TIGR03810 313 LMPKYFGKENANGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLATSAILVPYLWSAAYQVKLSWRGGQERGRRKQLL 392

                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1436568781 403 IGGIGTLYMLYAMMVSGFAYILLLSIPFAIGLGFYFNARKKAGDEhVFSAKEKIVVAAVVLVAIGSAIAYAAGLV 477
Cdd:TIGR03810 393 IGLVALLYAVWLIYAAGLKYLLLSAILYAPGIYFYARARKEKGGP-VFTKGELLIFAAIVAGAVIAIYLLATGLI 466
 
Name Accession Description Interval E-value
arg_ornith_anti TIGR03810
arginine-ornithine antiporter; Members of this protein family are the arginine/ornithine ...
 4-477 3.43e-119

arginine-ornithine antiporter; Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2. [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 163522  Cd Length: 468  Bit Score: 357.05  E-value: 3.43e-119
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781   4 KKLGLFPLVAAILAGMIGSGVYDIGYQLASVASPGGAILAWIICFVGMLFLVLSLQNLLEKEPEGD-GIYIYARKVAGPI 82
Cdd:TIGR03810   1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDgGVYSYAKAGFGPF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781  83 GEFMSAWGYWVSGWIGNIAFATIMMIALGTFFPALGDtGASWPAIAIASIVLWGIFFFIRQGVESAMMINSIITILKIVP 162
Cdd:TIGR03810  81 MGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGG-GNNPPSIIGASVLLWCVHFLVLRGVEGAAFINTITTIAKLVP 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781 163 LAVFVIVTVTSFDFSVFTQDFWtnfagnaAAAGEGFSLESVFSQATNSMLSIIWLFMGIEYAALMSSRAKSKSIASKASI 242
Cdd:TIGR03810 160 LFVFIVIGIFAFKGDTFTNDFW-------GNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEKRSDVGKATV 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781 243 LGLLVGTLLLFVMSMLPYGLYSADELVALGEPCVGKVLVDFIGPVGAGFVGGAMILSIFGSWINYTYGPTESLQTLSEHG 322
Cdd:TIGR03810 233 IGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAKDK 312

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781 323 LLTERWGRKNAHGVASFSLLITTVLCQLLLITMHFTEDAYNFGFSLSGSAILVTWTFIVLYNFVRAVKNPHEKGRTKNLV 402
Cdd:TIGR03810 313 LMPKYFGKENANGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLATSAILVPYLWSAAYQVKLSWRGGQERGRRKQLL 392

                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1436568781 403 IGGIGTLYMLYAMMVSGFAYILLLSIPFAIGLGFYFNARKKAGDEhVFSAKEKIVVAAVVLVAIGSAIAYAAGLV 477
Cdd:TIGR03810 393 IGLVALLYAVWLIYAAGLKYLLLSAILYAPGIYFYARARKEKGGP-VFTKGELLIFAAIVAGAVIAIYLLATGLI 466
PotE COG0531
Serine transporter YbeC, amino acid:H+ symporter family [Amino acid transport and metabolism];
4-447 2.82e-42

Serine transporter YbeC, amino acid:H+ symporter family [Amino acid transport and metabolism];


Pssm-ID: 440297 [Multi-domain]  Cd Length: 438  Bit Score: 155.44  E-value: 2.82e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781   4 KKLGLFPLVAAILAGMIGSGVYDIGYQLASVAsPGGAILAWIICFVGMLFLVLSLQNLLEKEPEGDGIYIYARKVAGPIG 83
Cdd:COG0531    11 RKLGLFDLVALGVGAIIGAGIFVLPGLAAGLA-GPAAILAWLIAGLLALLVALSYAELASAFPRAGGAYTYARRALGPLL 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781  84 EFMSAWGYWVSGWIGNIAFATIMMIALGTFFPALGDtgaswpaIAIASIVLWGIFFFIRQGVESAMMINSIITILKIVPL 163
Cdd:COG0531    90 GFLAGWALLLSYVLAVAAVAVAFGGYLSSLFPAGGS-------VLIALVLILLLTLLNLRGVKESAKVNNILTVLKLLVL 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781 164 AVFVIVTVTSFDFSVFTQdfwtnfagnaaaageGFSLESVFSQATNSMLSIIWLFMGIEYAALMSSRAK-SKSIASKASI 242
Cdd:COG0531   163 LLFIVVGLFAFDPANFTP---------------FLPAGGGLSGVLAALALAFFAFTGFEAIANLAEEAKnPKRNIPRAII 227

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781 243 LGLLVGTLLLFVMSMLPYGLYSADELVALGEPcVGKVLVDFIGPVGAGFVGGAMILSIFGSWINYTYGPTESLQTLSEHG 322
Cdd:COG0531   228 LSLLIVGVLYILVSLALTGVVPYDELAASGAP-LADAAEAVFGPWGAILIALGALLSLLGALNASILGASRLLYAMARDG 306

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781 323 LLTERWGRKNA-HGVASFSLLITTVLCQLLLItmhFTEDAYNFGFSLSGSAILVTWTFIVLYNFVRAVKNPHEKG--RTK 399
Cdd:COG0531   307 LLPKVFAKVHPrFGTPVNAILLTGVIALLLLL---LGAASFTALASLASVGVLLAYLLVALAVIVLRRRRPDLPRpfRVP 383

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*...
gi 1436568781 400 NLVIGGIGTLYMLYAMMVSGFAYILLLSIPFAIGLGFYFNARKKAGDE 447
Cdd:COG0531   384 LPLIPILGILLCLFLLYLLGPGALLIGLVLLAIGLLLYLLYRRRHPKL 431
AA_permease_2 pfam13520
Amino acid permease;
6-420 1.16e-24

Amino acid permease;


Pssm-ID: 404414 [Multi-domain]  Cd Length: 427  Bit Score: 105.86  E-value: 1.16e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781   6 LGLFPLVAAILAGMIGSGvydiGYQLASVASPGGAIL--AWIICFVGMLFLVLSLQNLLEKEPEGDGIYIYARKVAGPIG 83
Cdd:pfam13520   1 LGLLSAFALVIGSVIGSG----IFVAPLVASGGPALIvwGWIAAIIFSLAVGLVYAELSSALPRSGGIYVYLENAFGKFV 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781  84 EFMSAWGYWVSGWIGNIAFATIMMIALGTFFPALGdTGASWPAIAIASIVLWGIFFFIRQGVESAMMINSIITILKIV-P 162
Cdd:pfam13520  77 AFLAGWSNWFAYVLGLASSASVAASYLLSALGPDL-VPTTWLTYGIAIAILIIFAIINIRGVRESAKIQNILGILKLLlP 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781 163 LAVFVIVTVTSFDFSVFTQDFWtnfagnaaaaGEGFSLESVFSQATNSMLSIIWLFMGIEYAALMSSRAKSKSIaSKASI 242
Cdd:pfam13520 156 LILIIILGLVTADGGGFNLLSG----------EWHTFFPDGWPGVFAGFLGVLWSFTGFESAANVSEEVKKRNV-PKAIF 224

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781 243 LGLLVGTLLLFVMSMLPYGLYSADELVALGE-PCVGKVLVDFIG-PVGAGFVGGAMILSIFGSWINYTYGPTESLQTLSE 320
Cdd:pfam13520 225 IGVIIVGVLYILVNIAFFGVVPDDEIALSSGlGQVAALLFQAVGgKWGAIIVVILLALSLLGAVNTAIVGASRLLYALAR 304

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781 321 HGLL--TERWGRKNAHGVASFSLLITTVLCQLLLITMHFTEDAYNFGFSLSGSAILVTWTFIVLYNFVRAVKNPHEKGRT 398
Cdd:pfam13520 305 DGVLpfSRFFAKVNKFGSPIRAIILTAILSLILLLLFLLSPAAYNALLSLSAYGYLLSYLLPIIGLLILRKKRPDLGRIP 384

                         410       420
                  ....*....|....*....|..
gi 1436568781 399 KNLVIGGIGTLYMLYAMMVSGF 420
Cdd:pfam13520 385 GRWPVAIFGILFSLFLIVALFF 406
PRK10644 PRK10644
arginine/agmatine antiporter;
2-419 1.36e-17

arginine/agmatine antiporter;


Pssm-ID: 182613 [Multi-domain]  Cd Length: 445  Bit Score: 84.84  E-value: 1.36e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781   2 EEKKLGLFPLVAAILAGMIGSGVYDIGYQLASVAspGGAILAWIICFVGMLFLVLSLQNLLEKEPEGDGIYIYARKVAGP 81
Cdd:PRK10644    6 DAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTG--GIAIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAYARRCFGP 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781  82 IGEFMSAWGYWVSGWIGNIAFATIMMIALGTFFPALGDtgaswPAI-AIASIVLWGIFFFIRQ-GVESAMMINSIITILK 159
Cdd:PRK10644   84 FLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKD-----PLVlTITCVVVLWIFVLLNIvGPKMITRVQAVATVLA 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781 160 IVPlavfvIVTVTSFDFSVFTQDFWtnfagnaaAAGEGFSLESVFSQATNSMLSIIWLFMGIEYAALMSSRAKSKS---- 235
Cdd:PRK10644  159 LIP-----IVGIAVFGWFWFRGETY--------MAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKrnvp 225

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781 236 IASKAS--ILGLLVGTLLLFVMSMLPYGlysadELVALGEPcVGKVLVDFIGPVGAGFVGGAMILSIFGSWINYTYGPTE 313
Cdd:PRK10644  226 IATIGGvlIAAVCYVLSSTAIMGMIPNA-----ALRVSASP-FGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQ 299

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781 314 SLQTLSEHGLLTERWGRKNAHGVASFSLLITTVLCQLLLITMHFTEDAYNFGFSLSGSAILVTWTFIVLYNFVRAVKNPH 393
Cdd:PRK10644  300 TAKAAADDGLFPPIFARVNKAGTPVAGLLIVGVLMTIFQLSSISPNASKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGH 379

                         410       420
                  ....*....|....*....|....*..
gi 1436568781 394 -EKGRTKNLVIGGIGTLYMLYAMMVSG 419
Cdd:PRK10644  380 fGKARPAYLAVTLIAFVYCIWAVVGSG 406
 
Name Accession Description Interval E-value
arg_ornith_anti TIGR03810
arginine-ornithine antiporter; Members of this protein family are the arginine/ornithine ...
 4-477 3.43e-119

arginine-ornithine antiporter; Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2. [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 163522  Cd Length: 468  Bit Score: 357.05  E-value: 3.43e-119
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781   4 KKLGLFPLVAAILAGMIGSGVYDIGYQLASVASPGGAILAWIICFVGMLFLVLSLQNLLEKEPEGD-GIYIYARKVAGPI 82
Cdd:TIGR03810   1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDgGVYSYAKAGFGPF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781  83 GEFMSAWGYWVSGWIGNIAFATIMMIALGTFFPALGDtGASWPAIAIASIVLWGIFFFIRQGVESAMMINSIITILKIVP 162
Cdd:TIGR03810  81 MGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGG-GNNPPSIIGASVLLWCVHFLVLRGVEGAAFINTITTIAKLVP 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781 163 LAVFVIVTVTSFDFSVFTQDFWtnfagnaAAAGEGFSLESVFSQATNSMLSIIWLFMGIEYAALMSSRAKSKSIASKASI 242
Cdd:TIGR03810 160 LFVFIVIGIFAFKGDTFTNDFW-------GNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEKRSDVGKATV 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781 243 LGLLVGTLLLFVMSMLPYGLYSADELVALGEPCVGKVLVDFIGPVGAGFVGGAMILSIFGSWINYTYGPTESLQTLSEHG 322
Cdd:TIGR03810 233 IGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAKDK 312

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781 323 LLTERWGRKNAHGVASFSLLITTVLCQLLLITMHFTEDAYNFGFSLSGSAILVTWTFIVLYNFVRAVKNPHEKGRTKNLV 402
Cdd:TIGR03810 313 LMPKYFGKENANGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLATSAILVPYLWSAAYQVKLSWRGGQERGRRKQLL 392

                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1436568781 403 IGGIGTLYMLYAMMVSGFAYILLLSIPFAIGLGFYFNARKKAGDEhVFSAKEKIVVAAVVLVAIGSAIAYAAGLV 477
Cdd:TIGR03810 393 IGLVALLYAVWLIYAAGLKYLLLSAILYAPGIYFYARARKEKGGP-VFTKGELLIFAAIVAGAVIAIYLLATGLI 466
2A0302 TIGR00905
transporter, basic amino acid/polyamine antiporter (APA) family; This family includes several ...
 4-475 3.47e-101

transporter, basic amino acid/polyamine antiporter (APA) family; This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions. [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 129983  Cd Length: 473  Bit Score: 311.22  E-value: 3.47e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781   4 KKLGLFPLVAAILAGMIGSGVYDIGYQLASVASPGGAILAWIICFVGMLFLVLSLQNLLEKEPEGD-GIYIYARKVAGPI 82
Cdd:TIGR00905   7 KKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDgGIYAYAREGFGPY 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781  83 GEFMSAWGYWVSGWIGNIAFATIMMIALGTFFPALGDtGASWPAIAIASIVLWGIFFFIRQGVESAMMINSIITILKIVP 162
Cdd:TIGR00905  87 IGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGS-GNPVPSILGASVLLWVFTFLVLRGVRQAAFINTITTIAKLIP 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781 163 LAVFVIVTVTSFDFSVFTQDFWTNFAGnaaaagegfSLESVFSQATNSMLSIIWLFMGIEYAALMSSRAKSKSIASKASI 242
Cdd:TIGR00905 166 LFLFIIIGWFWFKLDLFTADFWGHDVP---------SLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKNKSDVGKATV 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781 243 LGLLVGTLLLFVMSMLPYGLYSADELVALGEPCVGKVLVDFIGPVGAGFVGGAMILSIFGSWINYTYGPTESLQTLSEHG 322
Cdd:TIGR00905 237 LGTLGALVIYILITLLSLGVLPQQELANLPNPSMAAVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAAEVPFSAAKDG 316

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781 323 LLTERWGRKNAHGVASFSLLITTVLCQLLLITMHFTEDAYNFGFSLSGSAILVTWTFIVLYNFVRA-VKNPHEKGRTKNL 401
Cdd:TIGR00905 317 LFPKIFGRVNKNGAPSVALLLTNILIQLFLLLTLLTSSAYNVLVSLAVVMILVPYLLSAAYLLKLAkVGTYPKIKNRKAL 396

                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1436568781 402 VIGGIGTLYMLYAMMVSGFAYILLLSIPFAIGLGFYFNARKKAGdEHVFSAKEKIVVAAVVLVAIGSAIAYAAG 475
Cdd:TIGR00905 397 IVGVIACVYSIWLLYAAGLKYLLLGFILYAPGIIFYGRARKERG-KHVFNKKEILIATIIVIAAIIAIWLLVNG 469
PotE COG0531
Serine transporter YbeC, amino acid:H+ symporter family [Amino acid transport and metabolism];
4-447 2.82e-42

Serine transporter YbeC, amino acid:H+ symporter family [Amino acid transport and metabolism];


Pssm-ID: 440297 [Multi-domain]  Cd Length: 438  Bit Score: 155.44  E-value: 2.82e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781   4 KKLGLFPLVAAILAGMIGSGVYDIGYQLASVAsPGGAILAWIICFVGMLFLVLSLQNLLEKEPEGDGIYIYARKVAGPIG 83
Cdd:COG0531    11 RKLGLFDLVALGVGAIIGAGIFVLPGLAAGLA-GPAAILAWLIAGLLALLVALSYAELASAFPRAGGAYTYARRALGPLL 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781  84 EFMSAWGYWVSGWIGNIAFATIMMIALGTFFPALGDtgaswpaIAIASIVLWGIFFFIRQGVESAMMINSIITILKIVPL 163
Cdd:COG0531    90 GFLAGWALLLSYVLAVAAVAVAFGGYLSSLFPAGGS-------VLIALVLILLLTLLNLRGVKESAKVNNILTVLKLLVL 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781 164 AVFVIVTVTSFDFSVFTQdfwtnfagnaaaageGFSLESVFSQATNSMLSIIWLFMGIEYAALMSSRAK-SKSIASKASI 242
Cdd:COG0531   163 LLFIVVGLFAFDPANFTP---------------FLPAGGGLSGVLAALALAFFAFTGFEAIANLAEEAKnPKRNIPRAII 227

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781 243 LGLLVGTLLLFVMSMLPYGLYSADELVALGEPcVGKVLVDFIGPVGAGFVGGAMILSIFGSWINYTYGPTESLQTLSEHG 322
Cdd:COG0531   228 LSLLIVGVLYILVSLALTGVVPYDELAASGAP-LADAAEAVFGPWGAILIALGALLSLLGALNASILGASRLLYAMARDG 306

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781 323 LLTERWGRKNA-HGVASFSLLITTVLCQLLLItmhFTEDAYNFGFSLSGSAILVTWTFIVLYNFVRAVKNPHEKG--RTK 399
Cdd:COG0531   307 LLPKVFAKVHPrFGTPVNAILLTGVIALLLLL---LGAASFTALASLASVGVLLAYLLVALAVIVLRRRRPDLPRpfRVP 383

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*...
gi 1436568781 400 NLVIGGIGTLYMLYAMMVSGFAYILLLSIPFAIGLGFYFNARKKAGDE 447
Cdd:COG0531   384 LPLIPILGILLCLFLLYLLGPGALLIGLVLLAIGLLLYLLYRRRHPKL 431
AA_permease_2 pfam13520
Amino acid permease;
6-420 1.16e-24

Amino acid permease;


Pssm-ID: 404414 [Multi-domain]  Cd Length: 427  Bit Score: 105.86  E-value: 1.16e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781   6 LGLFPLVAAILAGMIGSGvydiGYQLASVASPGGAIL--AWIICFVGMLFLVLSLQNLLEKEPEGDGIYIYARKVAGPIG 83
Cdd:pfam13520   1 LGLLSAFALVIGSVIGSG----IFVAPLVASGGPALIvwGWIAAIIFSLAVGLVYAELSSALPRSGGIYVYLENAFGKFV 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781  84 EFMSAWGYWVSGWIGNIAFATIMMIALGTFFPALGdTGASWPAIAIASIVLWGIFFFIRQGVESAMMINSIITILKIV-P 162
Cdd:pfam13520  77 AFLAGWSNWFAYVLGLASSASVAASYLLSALGPDL-VPTTWLTYGIAIAILIIFAIINIRGVRESAKIQNILGILKLLlP 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781 163 LAVFVIVTVTSFDFSVFTQDFWtnfagnaaaaGEGFSLESVFSQATNSMLSIIWLFMGIEYAALMSSRAKSKSIaSKASI 242
Cdd:pfam13520 156 LILIIILGLVTADGGGFNLLSG----------EWHTFFPDGWPGVFAGFLGVLWSFTGFESAANVSEEVKKRNV-PKAIF 224

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781 243 LGLLVGTLLLFVMSMLPYGLYSADELVALGE-PCVGKVLVDFIG-PVGAGFVGGAMILSIFGSWINYTYGPTESLQTLSE 320
Cdd:pfam13520 225 IGVIIVGVLYILVNIAFFGVVPDDEIALSSGlGQVAALLFQAVGgKWGAIIVVILLALSLLGAVNTAIVGASRLLYALAR 304

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781 321 HGLL--TERWGRKNAHGVASFSLLITTVLCQLLLITMHFTEDAYNFGFSLSGSAILVTWTFIVLYNFVRAVKNPHEKGRT 398
Cdd:pfam13520 305 DGVLpfSRFFAKVNKFGSPIRAIILTAILSLILLLLFLLSPAAYNALLSLSAYGYLLSYLLPIIGLLILRKKRPDLGRIP 384

                         410       420
                  ....*....|....*....|..
gi 1436568781 399 KNLVIGGIGTLYMLYAMMVSGF 420
Cdd:pfam13520 385 GRWPVAIFGILFSLFLIVALFF 406
PRK10644 PRK10644
arginine/agmatine antiporter;
2-419 1.36e-17

arginine/agmatine antiporter;


Pssm-ID: 182613 [Multi-domain]  Cd Length: 445  Bit Score: 84.84  E-value: 1.36e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781   2 EEKKLGLFPLVAAILAGMIGSGVYDIGYQLASVAspGGAILAWIICFVGMLFLVLSLQNLLEKEPEGDGIYIYARKVAGP 81
Cdd:PRK10644    6 DAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTG--GIAIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAYARRCFGP 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781  82 IGEFMSAWGYWVSGWIGNIAFATIMMIALGTFFPALGDtgaswPAI-AIASIVLWGIFFFIRQ-GVESAMMINSIITILK 159
Cdd:PRK10644   84 FLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKD-----PLVlTITCVVVLWIFVLLNIvGPKMITRVQAVATVLA 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781 160 IVPlavfvIVTVTSFDFSVFTQDFWtnfagnaaAAGEGFSLESVFSQATNSMLSIIWLFMGIEYAALMSSRAKSKS---- 235
Cdd:PRK10644  159 LIP-----IVGIAVFGWFWFRGETY--------MAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKrnvp 225

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781 236 IASKAS--ILGLLVGTLLLFVMSMLPYGlysadELVALGEPcVGKVLVDFIGPVGAGFVGGAMILSIFGSWINYTYGPTE 313
Cdd:PRK10644  226 IATIGGvlIAAVCYVLSSTAIMGMIPNA-----ALRVSASP-FGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQ 299

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781 314 SLQTLSEHGLLTERWGRKNAHGVASFSLLITTVLCQLLLITMHFTEDAYNFGFSLSGSAILVTWTFIVLYNFVRAVKNPH 393
Cdd:PRK10644  300 TAKAAADDGLFPPIFARVNKAGTPVAGLLIVGVLMTIFQLSSISPNASKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGH 379

                         410       420
                  ....*....|....*....|....*..
gi 1436568781 394 -EKGRTKNLVIGGIGTLYMLYAMMVSG 419
Cdd:PRK10644  380 fGKARPAYLAVTLIAFVYCIWAVVGSG 406
cadB PRK10435
cadaverine/lysine antiporter;
4-448 3.31e-17

cadaverine/lysine antiporter;


Pssm-ID: 182458  Cd Length: 435  Bit Score: 83.65  E-value: 3.31e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781   4 KKLGLFPLVAAILAGMIGSGVYDIGYQLASVASPggAILAWIICFVGMLFLVLSLQNLLEKEPEGDGIYIYARKVaGPIG 83
Cdd:PRK10435    5 KKIGLFACTGVVAGNMMGSGIALLPANLASIGSI--AIWGWIISIIGAMSLAYVYARLATKNPQQGGPIAYAGEI-SPAF 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781  84 EFMSAWGYWVSGWIGNIAFATIMMIALGTFFPALGDtgaSWPAiAIASIVLWGIFFFIRQ-GVESAMMINSIITILKIVP 162
Cdd:PRK10435   82 GFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLND---PIPA-GIACIAIVWVFTFVNMlGGTWVSRLTTIGLVLVLIP 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781 163 LAVFVIVTVTSFDFSVFTQDFWTnfagnaaaagegfSLESVFSQATNSMLSIIWLFMGIEYAALMSSRAKS-KSIASKAS 241
Cdd:PRK10435  158 VVGTAIVGWHWFDAATYAANWNT-------------SDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNpKRTVPLAT 224

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781 242 ILGLLVGTLLLFVMSMLPYGLYSADELVALGEP---CVGKVLVDFIGPVGAGFVGGAMILSIfGSWINYTygpTESLQTL 318
Cdd:PRK10435  225 MLGTGLAGIIYIAATQVISGMFPASVMAASGAPfaiSASTILGNWAAPLVSAFTAFACLTSL-GSWMMLV---GQAGVRA 300

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781 319 SEHGLLTERWGRKNAHGVASFSLLITTVLCQLLLITMHF-------TEDAYNfgfSLSGSAILVTwTFIVLYNFVRAVKn 391
Cdd:PRK10435  301 ANDGNFPKVYGEVDKNGIPKKGLLLAAVKMTALMILITLmnssggkASDLFG---ELTGIAVLLT-MLPYFYSCVDLIR- 375

                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781 392 pHEKGRTKN---LVIGGIGTLYMLYAMMVSGFAYILLLSIPFAIGLGFYfnARKKAGDEH 448
Cdd:PRK10435  376 -FEGVNIRNfvsLICSVLGCVFCFIALMGASSFELAGTFIVSLIILMFY--ARKMHERQS 432
AA_permease pfam00324
Amino acid permease;
16-382 6.22e-13

Amino acid permease;


Pssm-ID: 366028 [Multi-domain]  Cd Length: 467  Bit Score: 70.43  E-value: 6.22e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781  16 LAGMIGSGVYDIGYQLASVASPGGAILAWIICFVGMLFLVLSLQNLLEKEPEGDGIYIYARKVAGPIGEFMSAWGYWVSg 95
Cdd:pfam00324   7 LGGVIGTGLFVGSGSVLGQAGPAGALLGYLISGVVIFLVMLSLGEISTNGPVSGGFYTYASRFLGPSLGFATGWNYWLS- 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781  96 WIGNIAFATIMMIALGTFFPALGDTGASWPAIAIASIVLWGIFFFirqGVESAMMINSIITILKIVPLAVFVIVTVTSF- 174
Cdd:pfam00324  86 WITVLALELTAASILIQFWELVPDIPYLWVWGAVFLVLLTIINLV---GVKWYGEAEFWFALIKIIAIIGFIIVGIILLs 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781 175 ----DFSVFTQDFWTNFAGNAAAAGEGFSLESVFSQATNSmlsiiwlFMGIEYAALMSSRAKSKSIASKASILGLLVGTL 250
Cdd:pfam00324 163 ggnpNDGAIFRYLGDNGGKNNFPPGFGKGFISVFVIAFFA-------FTGIELVGIAAGEVKNPEKSIPKAILQVIWRIT 235

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781 251 LLFVMSMLPYGL---YSADELVALGEPCVGKVLV--DFIGPVGAGFVGGAMIL-SIFGSWINYTYGPTESLQTLSEHGLL 324
Cdd:pfam00324 236 IFYILSLLAIGLlvpWNDPGLLNDSASAASPFVIffKFLGISGLAPLINAVILtAALSAANSSLYSGSRMLYSLARDGLA 315

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1436568781 325 TERWGRKNAHGVASFSLLITTVLCQLLLITMHF-TEDAYNFGFSLSGSAILVTWTFIVL 382
Cdd:pfam00324 316 PKFLKKVDKRGVPLRAILVSMVISLLALLLASLnPAIVFNFLLAISGLSGLIVWGLISL 374
potE PRK10655
putrescine transporter; Provisional
 4-437 3.56e-05

putrescine transporter; Provisional


Pssm-ID: 182622  Cd Length: 438  Bit Score: 46.18  E-value: 3.56e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781   4 KKLGLFPLVAAILAGMIGSGVYDIGYQLASVASPggAILAWIICFVGMLFLVLSLQNLLEKEPEGDGIYIYARKVAGPIG 83
Cdd:PRK10655    6 NKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGTI--SILSWLVTAVGSMALAYAFAKCGMFSRKSGGMGGYAEYAFGKSG 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781  84 EFMSAWGYWVSGWIGNIAFAtIMMIALGT-FFPAlgdtGASWPAIAIASI-VLWGIFFFIRQGVESAMMINSIITILKIV 161
Cdd:PRK10655   84 NFMANYTYGVSLLIANVAIA-ISAVGYGTeLFGA----TLSPVQICLATIgVLWLCTVANFGGARITGQISSVTVWGVII 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781 162 PLAVFVIVTVTSFDFSVFTQDfWTNFAGNaaaagegfslesvFSQATNSMLSI-IWLFMGIEYAALMSSRAKS-KSIASK 239
Cdd:PRK10655  159 PVVGLSIIGWFWFSPSLYVAA-WNPHHLP-------------FFSAVGSSIAMtLWAFLGLESACANSDAVENpERNVPI 224

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781 240 ASILGLLVGTLLLFVMSMLPYGLYSADELVALGEPcVGKVLVDFIGPVGAGFVGGAMILSIFGSWINYTYGPTESLQTLS 319
Cdd:PRK10655  225 AVLGGTLGAAVIYIVSTNVIAGIVPNMELANSTAP-FGLAFAQMFNPTVGKIVMALMVMSCCGSLLGWQFTIAQVFKSSA 303

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781 320 EHGLLTERWGRKNAHGVASFSLLITTVLcQLLLITMHFTEDAYNFGFSLSGSAILvtwTFIVLYNFVRA-------VKNP 392
Cdd:PRK10655  304 DEGYFPKIFSRVTKVDAPVQGMLIIVVI-QSLLSLMTISPSLNSQFNVLVNLAVV---TNIIPYILSMAalviiqkVANV 379

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*
gi 1436568781 393 HEKGRTKNLVIGGIGTLYMLYAMMVSGFAYILLLSIPFAIGLGFY 437
Cdd:PRK10655  380 PPSKAKVANFIAFVGALYSFYALYSSGEEAMLYGSIVTFLGWTLY 424
frlA PRK11357
amino acid permease;
3-274 6.58e-04

amino acid permease;


Pssm-ID: 183096 [Multi-domain]  Cd Length: 445  Bit Score: 42.15  E-value: 6.58e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781   3 EKKLGLFPLVAAILAGMIGSGVY-DIGYQLASVASPGGAILAWIICFVGMLFLVLSLQNLLEKEPEGDGIYIYARKVAGP 81
Cdd:PRK11357    7 QRKLGFWAVLAIAVGTTVGSGIFvSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVYLKNAGSR 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781  82 IGEFMSAWGYWvsgWIGNIAFATIMMIALGTFFPALgdtgASWPAIAIASIVLWGIFFFI---RQGVESAMMINSIITIL 158
Cdd:PRK11357   87 PLAFLSGWASF---WANDAPSLSIMALAIVSNLGFL----TPIDPLLGKFIAAGLIIAFMllhLRSVEGGAAFQTLITIA 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781 159 KIVPLAVFVIVTVtsfdfsvftqdFWTNFAGNAAAAGEGFSLESVFSQATNSMLSIIWLFMGIEYAALMSSRAKS-KSIA 237
Cdd:PRK11357  160 KIIPFTIVIGLGI-----------FWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNpGKTM 228

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 1436568781 238 SKASILGLLVGTLLLFVMSMLPYGLYSADELVALGEP 274
Cdd:PRK11357  229 PRALIGSCLLVLVLYTLLALVISGLMPFDKLANSETP 265
2A0308 TIGR00911
L-type amino acid transporter; [Transport and binding proteins, Amino acids, peptides and ...
 3-168 1.79e-03

L-type amino acid transporter; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273332 [Multi-domain]  Cd Length: 501  Bit Score: 40.89  E-value: 1.79e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781   3 EKKLGLFPLVAAILAGMIGSGVYDIGYQ-LASVASPGGAILAWIICFVGMLFLVLSLQNLLEKEPEGDGIYIYARKVAGP 81
Cdd:TIGR00911  41 KKEITLLSGVGIIVGTIIGSGIFVSPKGvLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGGEYNYILEVFGP 120

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781  82 IGEFMSAWGYWV---SGWIGNIAFATIMMIaLGTFFPALGDTgaSWPAIAIASIVLWGIFFFIRQGVESAMMINSIITIL 158
Cdd:TIGR00911 121 LLAFLRLWIELLvirPGSQAVNALNFAIYI-LTPVFPDCEVP--EWAIRLVAVLCVLLLTLVNCLSVKWATRVQDIFTAC 197

                         170
                  ....*....|
gi 1436568781 159 KIVPLAVFVI 168
Cdd:TIGR00911 198 KLLALLLIII 207
LysP COG0833
Amino acid permease [Amino acid transport and metabolism];
16-94 3.61e-03

Amino acid permease [Amino acid transport and metabolism];


Pssm-ID: 440595 [Multi-domain]  Cd Length: 467  Bit Score: 39.77  E-value: 3.61e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781  16 LAGMIGSGVY-DIGYQLASvASPGGAILAWIICFVGMLFLVLSLQNLLEKEPEGDGIYIYARKVAGPIGEFMSAWGYWVS 94
Cdd:COG0833    24 LGGVIGTGLFlASGYTISQ-AGPGGALLAYLLGGLMVYFLMTSLGELAVAMPVSGSFQTYATRFIDPAFGFAVGWNYWLN 102
2A0303 TIGR00906
cationic amino acid transport permease; [Transport and binding proteins, Amino acids, peptides ...
 4-177 5.41e-03

cationic amino acid transport permease; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273330 [Multi-domain]  Cd Length: 557  Bit Score: 39.41  E-value: 5.41e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781   4 KKLGLFPLVAAILAGMIGSGVYDIGYQLASVASPGGAILAWIICFVGMLFLVLSLQNLLEKEPEGDGIYIYARKVAGPIG 83
Cdd:TIGR00906  28 RCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYSYVTVGELW 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436568781  84 EFMSAWGYWVSGWIGNIA--------FATIMMIALGTFFP---ALGDTGASWPAIAIASIVLWGIFFFIRQGVESAMMIN 152
Cdd:TIGR00906 108 AFITGWNLILEYVIGTAAvarswsayFDELLNKQIGQFRRtyfKLNYDGLAEYPDFFAVCLILLLAVLLSFGVKESAWVN 187

                         170       180
                  ....*....|....*....|....*
gi 1436568781 153 SIITILKIVPLAVFVIVTVTSFDFS 177
Cdd:TIGR00906 188 KIFTAINILVLLFVIIAGFTKADVA 212
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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