|
Name |
Accession |
Description |
Interval |
E-value |
| type_IV_pilB |
TIGR02538 |
type IV-A pilus assembly ATPase PilB; This model describes a protein of type IV pilus ... |
12-570 |
0e+00 |
|
type IV-A pilus assembly ATPase PilB; This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems. [Cell envelope, Surface structures, Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274186 [Multi-domain] Cd Length: 564 Bit Score: 915.56 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 12 GFFRRLVEEKHVSAATMQTALDAAKRAKQDTVAYLIEEVHLSPSLLAETISAEFAEPYFDLDVYDTSQIPKDLVDQKLIL 91
Cdd:TIGR02538 1 GLGRILVKAGLLTETQAQAALEEAQASGQPLVQYLIQNGLLDPKQLAEFLSREFGVPLLDLNAFDPDALPVQLVSEELIQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 92 KHRILPLIQRGQILYVATSNPSNIEAIDAIRFNSKLLVEPVIVEHHKLEKVLGQHFAEESSF--DFNDEEFDLDVNLD-G 168
Cdd:TIGR02538 81 KHQALPLFKRGNTLFVAVSDPTNISALDDIRFATGLNVEVVIVEEDKLSALIEKYYGGSDSLakELGDEDIGDLEELDvD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 169 PTTQEDEEEAPQ---GDEAPIVKYINKLLIDAIRMGASDLHFEPYEKSYRVRYRVDGVLRQIANPPLQLANRLASRLKVM 245
Cdd:TIGR02538 161 AIDDEGPDDIEQdavDDDAPIVKFVNKILLDAIRKGASDIHFEPYEKSYRVRFRIDGILHEVAQPPLALANRIAARIKVM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 246 SQMDISEKRVPQDGRIKLKLSKSKAIDFRVNSLPTLFGEKLVLRILDPSSAMLGIDALGYEEDQKALFMEALDKPQGMLL 325
Cdd:TIGR02538 241 SRLDIAEKRIPQDGRIKLKLSKSKAIDFRVSTLPTLFGEKVVLRILDSSAAQLDIDKLGFEPDQKALFLEAIHKPQGMVL 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 326 ITGPTGSGKTVSLYTGLNILNTESSNISTAEDPVEINLEGINQVNVNPKVGLTFAAALKSFLRQDPDIIMVGEIRDLETA 405
Cdd:TIGR02538 321 VTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINLPGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIRDLETA 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 406 EIAIKAAQTGHMVMSTLHTNSAPETLTRLRNMGVPSFNIATSVNLVIAQRLARRLCSQCKIPADIPKQSLLEMGFTEQDL 485
Cdd:TIGR02538 401 EIAIKAAQTGHLVLSTLHTNDAPETLARLVNMGIAPFNIASSVNLIMAQRLARRLCSHCKAPEEVPAEALLELGFTQEDL 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 486 AhpDFRVFQPVGCSECR-EGYKGRVGIYEVMKVTPEISKIIMEDGNALEIAAASEKLGFNNLRRSGLKKVMQGVTSLQEV 564
Cdd:TIGR02538 481 A--DLKLYGPVGCDECSnTGYKGRVGIYEVMPMSEEIAELILKGGNALQIAELAQKEGMRTLRRSGLLKVKQGVTSLEEV 558
|
....*.
gi 1428898976 565 NRVTSE 570
Cdd:TIGR02538 559 LRVTVD 564
|
|
| PulE |
COG2804 |
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell ... |
12-570 |
0e+00 |
|
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell motility, Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442055 [Multi-domain] Cd Length: 561 Bit Score: 796.71 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 12 GFFRRLVEEKHVSAATMQTALDAAKRAKQDTVAYLIEEVHLSPSLLAETISAEFAEPYFDLDVYDTSQIPKDLVDQKLIL 91
Cdd:COG2804 8 RLGDLLVEAGLISEEQLLAALAEQKKTGKPLGELLVELGLVTEELLAEALAEQLGLPFVDLDELEIDPEVLELLPEELAR 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 92 KHRILPLIQRGQILYVATSNPSNIEAIDAIRFNSKLLVEPVIVEHHKLEKVLGQHFAEESSFDFNDEEFDLDVNLDGPTT 171
Cdd:COG2804 88 RHRVLPLRLEGGTLTVAMADPLDLEALDELRRLTGRPVEPVVATESDIERALDRLYGSESSIEELLEELAEDLTSEEEDL 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 172 QEDEEEApqgDEAPIVKYINKLLIDAIRMGASDLHFEPYEKSYRVRYRVDGVLRQIANPPLQLANRLASRLKVMSQMDIS 251
Cdd:COG2804 168 EDLLEEA---DDAPVVRLVNAILEDAIKEGASDIHIEPYEKRLRVRFRIDGVLREVLRLPKSLAPALVSRIKIMANLDIA 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 252 EKRVPQDGRIKLKLSkSKAIDFRVNSLPTLFGEKLVLRILDPSSAMLGIDALGYEEDQKALFMEALDKPQGMLLITGPTG 331
Cdd:COG2804 245 ERRLPQDGRIKLRLG-GREIDLRVSTLPTVYGEKVVLRILDKSAALLDLEQLGFSPDQLERLRRLIRRPHGIILVTGPTG 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 332 SGKTVSLYTGLNILNTESSNISTAEDPVEINLEGINQVNVNPKVGLTFAAALKSFLRQDPDIIMVGEIRDLETAEIAIKA 411
Cdd:COG2804 324 SGKTTTLYAALNELNTPERNIITVEDPVEYQLPGINQVQVNPKIGLTFASALRSILRQDPDVIMVGEIRDLETAEIAVQA 403
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 412 AQTGHMVMSTLHTNSAPETLTRLRNMGVPSFNIATSVNLVIAQRLARRLCSQCKIPADIPKQSLLEMGFTEQDLAhpDFR 491
Cdd:COG2804 404 ALTGHLVLSTLHTNDAPSAITRLLDMGVEPFLLASSLLGVLAQRLVRRLCPHCKEPYEPDPEELERLGLPPEELA--PLT 481
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 492 VFQPVGCSECRE-GYKGRVGIYEVMKVTPEISKIIMEDGNALEIAAASEKLGFNNLRRSGLKKVMQGVTSLQEVNRVTSE 570
Cdd:COG2804 482 FYRGVGCEHCNGtGYKGRTGIYELLVIDDELRELIAEGASAAELREAARKEGMRTLREDGLEKVLQGITTLEEVLRVTGE 561
|
|
| PRK10436 |
PRK10436 |
hypothetical protein; Provisional |
87-568 |
2.28e-169 |
|
hypothetical protein; Provisional
Pssm-ID: 236694 Cd Length: 462 Bit Score: 488.67 E-value: 2.28e-169
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 87 QKLILKHRILPLIQRGQILYVATSNPSNIEAIDAIRFNSKLLVEPVIVEHHKLEKVLgqhfaeessfdfndeefdldvNL 166
Cdd:PRK10436 10 HALCQRYQAVLLDSDEETLHVAVVDAPSHELLDALRFATGKRIEIECWPRAQMEQHL---------------------QR 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 167 DGPTTQEDEEEapqgDEAPIVKYINKLLIDAIRMGASDLHFEPYEKSYRVRYRVDGVLRQIANPPLQLANRLASRLKVMS 246
Cdd:PRK10436 69 TQQTLPVADQE----KDTPVAQLINQTLQSALQKRASDIHFEPAQNHYRIRLRIDGVLHPLPDPSPELGAALTARLKVLG 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 247 QMDISEKRVPQDGRIKLKLSKsKAIDFRVNSLPTLFGEKLVLRILDPSSAMLGIDALGYEEDQKALFMEALDKPQGMLLI 326
Cdd:PRK10436 145 NLDIAERRLPQDGQFTVELAG-NAYSFRIATLPCRGGEKVVLRLLQQVQQALDLETLGMTPAQLAQFRQALQQPQGLILV 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 327 TGPTGSGKTVSLYTGLNILNTESSNISTAEDPVEINLEGINQVNVNPKVGLTFAAALKSFLRQDPDIIMVGEIRDLETAE 406
Cdd:PRK10436 224 TGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIRDGETAE 303
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 407 IAIKAAQTGHMVMSTLHTNSAPETLTRLRNMGVPSFNIATSVNLVIAQRLARRLCSQCKIPADIPkqslleMGFTEQDLA 486
Cdd:PRK10436 304 IAIKAAQTGHLVLSTLHTNSTSETLVRLQQMGIARWMLASALKLVIAQRLVRKLCPHCRQQASEP------IHLPPNIWP 377
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 487 HPdFRVFQPVGCSECREGYKGRVGIYEVMKVTPEISKIIMEDGNALEIAAASEKLGFNNLRRSGLKKVMQGVTSLQEVNR 566
Cdd:PRK10436 378 GP-LPHWQAVGCEHCYHGYYGRTALFEVLPITPVLQQAIASNASPEELETHARQQGMTTLFENGLLAVEQGLTTLEELYR 456
|
..
gi 1428898976 567 VT 568
Cdd:PRK10436 457 VL 458
|
|
| T2SSE |
pfam00437 |
Type II/IV secretion system protein; This family contains components of both the Type II ... |
191-460 |
5.22e-142 |
|
Type II/IV secretion system protein; This family contains components of both the Type II protein secretion system (T2SS), including Type 4 pilus (T4P), and Type IV protein secretion system (T4SS) from Gram-negative bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection. The cytoplasmic T2S E ATPase is a Zn-containing protein thought to provide the mechanical force for the secretion process. T2S-E contains Walker A and B motifs, that are essential for secretion and ATPase activity. ATPase PulE and XcpR from Klebsiella oxytoca and Pseudomonas aeruginosa respectively are required for protein secretion via the T2SS. ATPase PilB is required for T4P extension.
Pssm-ID: 425681 [Multi-domain] Cd Length: 269 Bit Score: 411.29 E-value: 5.22e-142
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 191 NKLLIDAIRMGASDLHFEPYEKSYRVRYRVDGVLRQIANPPLQLANRLASRLKVMSQMDISEKRVPQDGRIKLKLsKSKA 270
Cdd:pfam00437 1 NLIPLEALDEGASDIHVEPPERIVWIRFRVDGVLREIPFPDADALARLISRIKVMARLDISERRPPQDGRLPLRI-GGKG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 271 IDFRVNSLPTLFGEKLVLRILDPSSAMLGIDALGYEEDQKALFMEALDKPQGMLLITGPTGSGKTVSLYTGLNILNTESS 350
Cdd:pfam00437 80 VRVRVSTLPTAGGEKLVIRLLDPSNVALSLDELGMTGAQDEALLEFLRQPRGNILVTGPTGSGKTTTLYAALGELNTRDE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 351 NISTAEDPVEINLEGINQVNVNPKVGLTFAAALKSFLRQDPDIIMVGEIRDLETAEIAIKAAQTGHMVMSTLHTNSAPET 430
Cdd:pfam00437 160 NIVTVEDPVEIQLEGINQVQLNARAGVTFADLLRAILRQDPDRIMVGEIRDLETAEIALQAANTGHLVLSTLHTNSAAGA 239
|
250 260 270
....*....|....*....|....*....|
gi 1428898976 431 LTRLRNMGVPSFNIATSVNLVIAQRLARRL 460
Cdd:pfam00437 240 LTRLQDMGVPPFELASSLLLVIAQRLVRKL 269
|
|
| ATPase_ComGA |
NF041000 |
competence type IV pilus ATPase ComGA; |
191-456 |
1.57e-91 |
|
competence type IV pilus ATPase ComGA;
Pssm-ID: 468930 [Multi-domain] Cd Length: 265 Bit Score: 282.03 E-value: 1.57e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 191 NKLLIDAIRMGASDLHFEPYEKSYRVRYRVDGVLRQIANPPLQLANRLASRLKVMSQMDISEKRVPQDGRIKLKLSKSKa 270
Cdd:NF041000 1 EELIEEAIELRASDIHFLPREDGYQIKFRIGGGLIPYRELSLEEGQRLISYFKFLAGMDIGEKRRPQSGAFTYELNEQQ- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 271 IDFRVNSLPTLFG-EKLVLRILDPSSAMLGIDalgYEEDQKALFMEALDKPQGMLLITGPTGSGKTVSLYTGLNILNTES 349
Cdd:NF041000 80 ISLRLSTVGDFLGrESLVIRLLYQLEQIKPQL---FFPEQFQLLKQLLQRRSGLILFSGPTGSGKTTTMYSLARKLALNK 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 350 sNISTAEDPVEINLEGINQVNVNPKVGLTFAAALKSFLRQDPDIIMVGEIRDLETAEIAIKAAQTGHMVMSTLHTNSAPE 429
Cdd:NF041000 157 -QVITIEDPVEIKEPNFLQLQVNEKAGMTYDTLLKAALRHRPDILIIGEIRDAETAKAAIRAALTGHLVLSTVHAKSAAG 235
|
250 260
....*....|....*....|....*..
gi 1428898976 430 TLTRLRNMGVPSFNIATSVNLVIAQRL 456
Cdd:NF041000 236 VIYRLLELGISKEELEQTLIGISYQRL 262
|
|
| PulE-GspE-like |
cd01129 |
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II ... |
311-459 |
6.02e-85 |
|
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II secretory pathway, the main terminal branch of the general secretory pathway (GSP). PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PilB, a type IV pilus assembly ATPase, DotB, an ATPase of the type IVb secretion system, also known as the dot/icm system, Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ, and HofB.
Pssm-ID: 410873 [Multi-domain] Cd Length: 159 Bit Score: 260.88 E-value: 6.02e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 311 ALFMEALDKPQGMLLITGPTGSGKTVSLYTGLNILNTESSNISTAEDPVEINLEGINQVNVNPKVGLTFAAALKSFLRQD 390
Cdd:cd01129 1 ARLRRLIKRPHGLILVTGPTGSGKTTTLYAMLRELNGPERNIITIEDPVEYQIPGINQSQVNEKIGLTFADALRAILRQD 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1428898976 391 PDIIMVGEIRDLETAEIAIKAAQTGHMVMSTLHTNSAPETLTRLRNMGVPSFNIATSVNLVIAQRLARR 459
Cdd:cd01129 81 PDIIMVGEIRDAETAEIAIRAALTGHLVLSTLHTNDALGAITRLLDMGIEPFLLASALRGVIAQRLVGR 149
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| type_IV_pilB |
TIGR02538 |
type IV-A pilus assembly ATPase PilB; This model describes a protein of type IV pilus ... |
12-570 |
0e+00 |
|
type IV-A pilus assembly ATPase PilB; This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems. [Cell envelope, Surface structures, Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274186 [Multi-domain] Cd Length: 564 Bit Score: 915.56 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 12 GFFRRLVEEKHVSAATMQTALDAAKRAKQDTVAYLIEEVHLSPSLLAETISAEFAEPYFDLDVYDTSQIPKDLVDQKLIL 91
Cdd:TIGR02538 1 GLGRILVKAGLLTETQAQAALEEAQASGQPLVQYLIQNGLLDPKQLAEFLSREFGVPLLDLNAFDPDALPVQLVSEELIQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 92 KHRILPLIQRGQILYVATSNPSNIEAIDAIRFNSKLLVEPVIVEHHKLEKVLGQHFAEESSF--DFNDEEFDLDVNLD-G 168
Cdd:TIGR02538 81 KHQALPLFKRGNTLFVAVSDPTNISALDDIRFATGLNVEVVIVEEDKLSALIEKYYGGSDSLakELGDEDIGDLEELDvD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 169 PTTQEDEEEAPQ---GDEAPIVKYINKLLIDAIRMGASDLHFEPYEKSYRVRYRVDGVLRQIANPPLQLANRLASRLKVM 245
Cdd:TIGR02538 161 AIDDEGPDDIEQdavDDDAPIVKFVNKILLDAIRKGASDIHFEPYEKSYRVRFRIDGILHEVAQPPLALANRIAARIKVM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 246 SQMDISEKRVPQDGRIKLKLSKSKAIDFRVNSLPTLFGEKLVLRILDPSSAMLGIDALGYEEDQKALFMEALDKPQGMLL 325
Cdd:TIGR02538 241 SRLDIAEKRIPQDGRIKLKLSKSKAIDFRVSTLPTLFGEKVVLRILDSSAAQLDIDKLGFEPDQKALFLEAIHKPQGMVL 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 326 ITGPTGSGKTVSLYTGLNILNTESSNISTAEDPVEINLEGINQVNVNPKVGLTFAAALKSFLRQDPDIIMVGEIRDLETA 405
Cdd:TIGR02538 321 VTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINLPGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIRDLETA 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 406 EIAIKAAQTGHMVMSTLHTNSAPETLTRLRNMGVPSFNIATSVNLVIAQRLARRLCSQCKIPADIPKQSLLEMGFTEQDL 485
Cdd:TIGR02538 401 EIAIKAAQTGHLVLSTLHTNDAPETLARLVNMGIAPFNIASSVNLIMAQRLARRLCSHCKAPEEVPAEALLELGFTQEDL 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 486 AhpDFRVFQPVGCSECR-EGYKGRVGIYEVMKVTPEISKIIMEDGNALEIAAASEKLGFNNLRRSGLKKVMQGVTSLQEV 564
Cdd:TIGR02538 481 A--DLKLYGPVGCDECSnTGYKGRVGIYEVMPMSEEIAELILKGGNALQIAELAQKEGMRTLRRSGLLKVKQGVTSLEEV 558
|
....*.
gi 1428898976 565 NRVTSE 570
Cdd:TIGR02538 559 LRVTVD 564
|
|
| PulE |
COG2804 |
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell ... |
12-570 |
0e+00 |
|
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell motility, Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442055 [Multi-domain] Cd Length: 561 Bit Score: 796.71 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 12 GFFRRLVEEKHVSAATMQTALDAAKRAKQDTVAYLIEEVHLSPSLLAETISAEFAEPYFDLDVYDTSQIPKDLVDQKLIL 91
Cdd:COG2804 8 RLGDLLVEAGLISEEQLLAALAEQKKTGKPLGELLVELGLVTEELLAEALAEQLGLPFVDLDELEIDPEVLELLPEELAR 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 92 KHRILPLIQRGQILYVATSNPSNIEAIDAIRFNSKLLVEPVIVEHHKLEKVLGQHFAEESSFDFNDEEFDLDVNLDGPTT 171
Cdd:COG2804 88 RHRVLPLRLEGGTLTVAMADPLDLEALDELRRLTGRPVEPVVATESDIERALDRLYGSESSIEELLEELAEDLTSEEEDL 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 172 QEDEEEApqgDEAPIVKYINKLLIDAIRMGASDLHFEPYEKSYRVRYRVDGVLRQIANPPLQLANRLASRLKVMSQMDIS 251
Cdd:COG2804 168 EDLLEEA---DDAPVVRLVNAILEDAIKEGASDIHIEPYEKRLRVRFRIDGVLREVLRLPKSLAPALVSRIKIMANLDIA 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 252 EKRVPQDGRIKLKLSkSKAIDFRVNSLPTLFGEKLVLRILDPSSAMLGIDALGYEEDQKALFMEALDKPQGMLLITGPTG 331
Cdd:COG2804 245 ERRLPQDGRIKLRLG-GREIDLRVSTLPTVYGEKVVLRILDKSAALLDLEQLGFSPDQLERLRRLIRRPHGIILVTGPTG 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 332 SGKTVSLYTGLNILNTESSNISTAEDPVEINLEGINQVNVNPKVGLTFAAALKSFLRQDPDIIMVGEIRDLETAEIAIKA 411
Cdd:COG2804 324 SGKTTTLYAALNELNTPERNIITVEDPVEYQLPGINQVQVNPKIGLTFASALRSILRQDPDVIMVGEIRDLETAEIAVQA 403
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 412 AQTGHMVMSTLHTNSAPETLTRLRNMGVPSFNIATSVNLVIAQRLARRLCSQCKIPADIPKQSLLEMGFTEQDLAhpDFR 491
Cdd:COG2804 404 ALTGHLVLSTLHTNDAPSAITRLLDMGVEPFLLASSLLGVLAQRLVRRLCPHCKEPYEPDPEELERLGLPPEELA--PLT 481
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 492 VFQPVGCSECRE-GYKGRVGIYEVMKVTPEISKIIMEDGNALEIAAASEKLGFNNLRRSGLKKVMQGVTSLQEVNRVTSE 570
Cdd:COG2804 482 FYRGVGCEHCNGtGYKGRTGIYELLVIDDELRELIAEGASAAELREAARKEGMRTLREDGLEKVLQGITTLEEVLRVTGE 561
|
|
| type_II_gspE |
TIGR02533 |
type II secretion system protein E; This family describes GspE, the E protein of the type II ... |
92-568 |
5.64e-177 |
|
type II secretion system protein E; This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 131585 [Multi-domain] Cd Length: 486 Bit Score: 508.84 E-value: 5.64e-177
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 92 KHRILPLIQRGQILYVATSNPSNIEAIDAIRFNSKLLVEPVIVEHHKLEKVLGQHFAEESS-----FDFNDEEFDLDVnL 166
Cdd:TIGR02533 11 QSRVLPLSEHDGTLVVAVSDPLDLAALDEVRRLFGAPVQLIIATASEIDDAINSVYARTGSaaaqiVEEIEGEDDLSA-L 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 167 DGPTTQEDEEEAPQgDEAPIVKYINKLLIDAIRMGASDLHFEPYEKSYRVRYRVDGVLRQIANPPLQLANRLASRLKVMS 246
Cdd:TIGR02533 90 ELDEPKIEDLLDLE-DDAPVIRLVNSLLSRAVKERASDIHIEPFEKALVVRFRVDGVLRDVLSPPKKLHAALVSRVKIMA 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 247 QMDISEKRVPQDGRIKLKLSkSKAIDFRVNSLPTLFGEKLVLRILDPSSAMLGIDALGYEEDQKALFMEALDKPQGMLLI 326
Cdd:TIGR02533 169 KLNIAEKRLPQDGRISLRVG-GRDIDIRVSTVPTSHGERVVMRLLDKTAVRLDLETLGMSPELLSRFERLIRRPHGIILV 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 327 TGPTGSGKTVSLYTGLNILNTESSNISTAEDPVEINLEGINQVNVNPKVGLTFAAALKSFLRQDPDIIMVGEIRDLETAE 406
Cdd:TIGR02533 248 TGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRDLETAQ 327
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 407 IAIKAAQTGHMVMSTLHTNSAPETLTRLRNMGVPSFNIATSVNLVIAQRLARRLCSQCKIPADIPKQSLLEMGFTEQDla 486
Cdd:TIGR02533 328 IAIQASLTGHLVLSTLHTNDAAGAVTRLIDMGVEPFLLASSLLGVLAQRLVRRLCPHCKEPYEATPEEIALFGISPEG-- 405
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 487 hpDFRVFQPVGCSEC-REGYKGRVGIYEVMKVTPEISKIIMEDGNALEIAAASEKLGFNNLRRSGLKKVMQGVTSLQEVN 565
Cdd:TIGR02533 406 --PINLYRPVGCPHCnHTGYLGRTGIYELLIVDDDLRSLIHSRADEGEIKEIARAAGMRTLRDDGLRKVLAGITTIEEVL 483
|
...
gi 1428898976 566 RVT 568
Cdd:TIGR02533 484 RVT 486
|
|
| PRK10436 |
PRK10436 |
hypothetical protein; Provisional |
87-568 |
2.28e-169 |
|
hypothetical protein; Provisional
Pssm-ID: 236694 Cd Length: 462 Bit Score: 488.67 E-value: 2.28e-169
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 87 QKLILKHRILPLIQRGQILYVATSNPSNIEAIDAIRFNSKLLVEPVIVEHHKLEKVLgqhfaeessfdfndeefdldvNL 166
Cdd:PRK10436 10 HALCQRYQAVLLDSDEETLHVAVVDAPSHELLDALRFATGKRIEIECWPRAQMEQHL---------------------QR 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 167 DGPTTQEDEEEapqgDEAPIVKYINKLLIDAIRMGASDLHFEPYEKSYRVRYRVDGVLRQIANPPLQLANRLASRLKVMS 246
Cdd:PRK10436 69 TQQTLPVADQE----KDTPVAQLINQTLQSALQKRASDIHFEPAQNHYRIRLRIDGVLHPLPDPSPELGAALTARLKVLG 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 247 QMDISEKRVPQDGRIKLKLSKsKAIDFRVNSLPTLFGEKLVLRILDPSSAMLGIDALGYEEDQKALFMEALDKPQGMLLI 326
Cdd:PRK10436 145 NLDIAERRLPQDGQFTVELAG-NAYSFRIATLPCRGGEKVVLRLLQQVQQALDLETLGMTPAQLAQFRQALQQPQGLILV 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 327 TGPTGSGKTVSLYTGLNILNTESSNISTAEDPVEINLEGINQVNVNPKVGLTFAAALKSFLRQDPDIIMVGEIRDLETAE 406
Cdd:PRK10436 224 TGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIRDGETAE 303
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 407 IAIKAAQTGHMVMSTLHTNSAPETLTRLRNMGVPSFNIATSVNLVIAQRLARRLCSQCKIPADIPkqslleMGFTEQDLA 486
Cdd:PRK10436 304 IAIKAAQTGHLVLSTLHTNSTSETLVRLQQMGIARWMLASALKLVIAQRLVRKLCPHCRQQASEP------IHLPPNIWP 377
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 487 HPdFRVFQPVGCSECREGYKGRVGIYEVMKVTPEISKIIMEDGNALEIAAASEKLGFNNLRRSGLKKVMQGVTSLQEVNR 566
Cdd:PRK10436 378 GP-LPHWQAVGCEHCYHGYYGRTALFEVLPITPVLQQAIASNASPEELETHARQQGMTTLFENGLLAVEQGLTTLEELYR 456
|
..
gi 1428898976 567 VT 568
Cdd:PRK10436 457 VL 458
|
|
| T2SSE |
pfam00437 |
Type II/IV secretion system protein; This family contains components of both the Type II ... |
191-460 |
5.22e-142 |
|
Type II/IV secretion system protein; This family contains components of both the Type II protein secretion system (T2SS), including Type 4 pilus (T4P), and Type IV protein secretion system (T4SS) from Gram-negative bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection. The cytoplasmic T2S E ATPase is a Zn-containing protein thought to provide the mechanical force for the secretion process. T2S-E contains Walker A and B motifs, that are essential for secretion and ATPase activity. ATPase PulE and XcpR from Klebsiella oxytoca and Pseudomonas aeruginosa respectively are required for protein secretion via the T2SS. ATPase PilB is required for T4P extension.
Pssm-ID: 425681 [Multi-domain] Cd Length: 269 Bit Score: 411.29 E-value: 5.22e-142
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 191 NKLLIDAIRMGASDLHFEPYEKSYRVRYRVDGVLRQIANPPLQLANRLASRLKVMSQMDISEKRVPQDGRIKLKLsKSKA 270
Cdd:pfam00437 1 NLIPLEALDEGASDIHVEPPERIVWIRFRVDGVLREIPFPDADALARLISRIKVMARLDISERRPPQDGRLPLRI-GGKG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 271 IDFRVNSLPTLFGEKLVLRILDPSSAMLGIDALGYEEDQKALFMEALDKPQGMLLITGPTGSGKTVSLYTGLNILNTESS 350
Cdd:pfam00437 80 VRVRVSTLPTAGGEKLVIRLLDPSNVALSLDELGMTGAQDEALLEFLRQPRGNILVTGPTGSGKTTTLYAALGELNTRDE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 351 NISTAEDPVEINLEGINQVNVNPKVGLTFAAALKSFLRQDPDIIMVGEIRDLETAEIAIKAAQTGHMVMSTLHTNSAPET 430
Cdd:pfam00437 160 NIVTVEDPVEIQLEGINQVQLNARAGVTFADLLRAILRQDPDRIMVGEIRDLETAEIALQAANTGHLVLSTLHTNSAAGA 239
|
250 260 270
....*....|....*....|....*....|
gi 1428898976 431 LTRLRNMGVPSFNIATSVNLVIAQRLARRL 460
Cdd:pfam00437 240 LTRLQDMGVPPFELASSLLLVIAQRLVRKL 269
|
|
| ATPase_ComGA |
NF041000 |
competence type IV pilus ATPase ComGA; |
191-456 |
1.57e-91 |
|
competence type IV pilus ATPase ComGA;
Pssm-ID: 468930 [Multi-domain] Cd Length: 265 Bit Score: 282.03 E-value: 1.57e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 191 NKLLIDAIRMGASDLHFEPYEKSYRVRYRVDGVLRQIANPPLQLANRLASRLKVMSQMDISEKRVPQDGRIKLKLSKSKa 270
Cdd:NF041000 1 EELIEEAIELRASDIHFLPREDGYQIKFRIGGGLIPYRELSLEEGQRLISYFKFLAGMDIGEKRRPQSGAFTYELNEQQ- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 271 IDFRVNSLPTLFG-EKLVLRILDPSSAMLGIDalgYEEDQKALFMEALDKPQGMLLITGPTGSGKTVSLYTGLNILNTES 349
Cdd:NF041000 80 ISLRLSTVGDFLGrESLVIRLLYQLEQIKPQL---FFPEQFQLLKQLLQRRSGLILFSGPTGSGKTTTMYSLARKLALNK 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 350 sNISTAEDPVEINLEGINQVNVNPKVGLTFAAALKSFLRQDPDIIMVGEIRDLETAEIAIKAAQTGHMVMSTLHTNSAPE 429
Cdd:NF041000 157 -QVITIEDPVEIKEPNFLQLQVNEKAGMTYDTLLKAALRHRPDILIIGEIRDAETAKAAIRAALTGHLVLSTVHAKSAAG 235
|
250 260
....*....|....*....|....*..
gi 1428898976 430 TLTRLRNMGVPSFNIATSVNLVIAQRL 456
Cdd:NF041000 236 VIYRLLELGISKEELEQTLIGISYQRL 262
|
|
| PulE-GspE-like |
cd01129 |
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II ... |
311-459 |
6.02e-85 |
|
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II secretory pathway, the main terminal branch of the general secretory pathway (GSP). PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PilB, a type IV pilus assembly ATPase, DotB, an ATPase of the type IVb secretion system, also known as the dot/icm system, Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ, and HofB.
Pssm-ID: 410873 [Multi-domain] Cd Length: 159 Bit Score: 260.88 E-value: 6.02e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 311 ALFMEALDKPQGMLLITGPTGSGKTVSLYTGLNILNTESSNISTAEDPVEINLEGINQVNVNPKVGLTFAAALKSFLRQD 390
Cdd:cd01129 1 ARLRRLIKRPHGLILVTGPTGSGKTTTLYAMLRELNGPERNIITIEDPVEYQIPGINQSQVNEKIGLTFADALRAILRQD 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1428898976 391 PDIIMVGEIRDLETAEIAIKAAQTGHMVMSTLHTNSAPETLTRLRNMGVPSFNIATSVNLVIAQRLARR 459
Cdd:cd01129 81 PDIIMVGEIRDAETAEIAIRAALTGHLVLSTLHTNDALGAITRLLDMGIEPFLLASALRGVIAQRLVGR 149
|
|
| PilT |
COG2805 |
Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular ... |
190-563 |
1.79e-65 |
|
Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular structures];
Pssm-ID: 442056 Cd Length: 342 Bit Score: 216.88 E-value: 1.79e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 190 INKLLIDAIRMGASDLHFEPyekSYRVRYRVDGVLRQIANPPL------QLANRLAS-----RLKVMSQMDISeKRVPQD 258
Cdd:COG2805 5 LDELLKLAVEQGASDLHLTV---GSPPMLRIDGELVPLDDPPLtpedleALLKEILTeeqreRLEEEGELDFS-YSLPGL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 259 GRiklklskskaidFRVNSLPTLFGEKLVLRILdpSSAMLGIDALGYEEDqkalFMEALDKPQGMLLITGPTGSGKTVSL 338
Cdd:COG2805 81 GR------------FRVNIFRQRGGVAAVLRLI--PSEIPTLEELGLPPV----LKELAELPRGLVLVTGPTGSGKSTTL 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 339 YTGLNILN-TESSNISTAEDPVEINLEG----INQVNVNPKVgLTFAAALKSFLRQDPDIIMVGEIRDLETAEIAIKAAQ 413
Cdd:COG2805 143 AAMIDYINeTRAKHIITIEDPIEFVHKHkkslINQREVGRDT-PSFANALRAALREDPDVILVGEMRDLETIEAALTAAE 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 414 TGHMVMSTLHTNSAPETLTRL------------RNMgvpsfnIATSVNLVIAQRLarrlcsqckIPadipkqsllemgft 481
Cdd:COG2805 222 TGHLVFATLHTNSAAQTIDRIidvfppeeqaqiRSQ------LAESLRGVISQRL---------LP-------------- 272
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 482 eqdlahpdfrvfqpvgcsecREGYKGRVGIYEVMKVTPEISKIIMEdGNALEIAAA---SEKLGFNNLRRSGLKKVMQGV 558
Cdd:COG2805 273 --------------------RADGGGRVAAREILVNTPAVRNLIRE-GKTHQIPSLiqtGKKLGMQTMDQSLAELVKEGL 331
|
....*
gi 1428898976 559 TSLQE 563
Cdd:COG2805 332 ITEET 336
|
|
| pilT_fam |
TIGR01420 |
pilus retraction protein PilT; This model represents the PilT subfamily of proteins related to ... |
190-563 |
1.51e-54 |
|
pilus retraction protein PilT; This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. [Cell envelope, Surface structures, Cellular processes, Chemotaxis and motility]
Pssm-ID: 273613 Cd Length: 343 Bit Score: 187.91 E-value: 1.51e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 190 INKLLIDAIRMGASDLHFEPYEKsyrVRYRVDGVLRQIANPPLQLANRLASRLKVMSqmDISEKRVPQDGRIKLKLSKSK 269
Cdd:TIGR01420 2 LEEILREAVKLGASDIHLTAGAP---PAMRIDGDLVRIEFEPLTPEDTQKLAREILS--EKQREEFEENGELDFSFSLPG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 270 AIDFRVNSLPTLFGEKLVLRILdpSSAMLGIDALGYEEdqkaLFMEALDKPQGMLLITGPTGSGKTVSLYTGLNILNTES 349
Cdd:TIGR01420 77 VGRFRVNAFYQRGGVALVLRLI--PSKIPTFEELGLPP----VLRELAERPRGLILVTGPTGSGKSTTLASMIDYINKNK 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 350 S-NISTAEDPVEINLEGINQVNVNPKVG---LTFAAALKSFLRQDPDIIMVGEIRDLETAEIAIKAAQTGHMVMSTLHTN 425
Cdd:TIGR01420 151 AyHIITIEDPIEYVHTNKRSLINQREVGedtLSFANALRAALREDPDVILIGEMRDLETVELALTAAETGHLVFGTLHTN 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 426 SAPETLTRL------------RNMgvpsfnIATSVNLVIAQRLARrlcsqckipadipkqsllemgfteqdlahpdfrvf 493
Cdd:TIGR01420 231 SAAQTIERIidvfpaeeqeqiRTQ------LAESLVAIISQRLLP----------------------------------- 269
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1428898976 494 qpvgcsecREGYKGRVGIYEVMKVTPEISKIIMEdGNALEIAAA---SEKLGFNNLRRSGLKKVMQGVTSLQE 563
Cdd:TIGR01420 270 --------KADGGGRVLAVEILINTPAVRNLIRE-GKTHQIKSLiqtGQQLGMQTFDQHLAQLYKKGLITLED 333
|
|
| PilT |
cd01131 |
Pilus retraction ATPase PilT; Pilus retraction ATPase PilT is a nucleotide-binding protein ... |
319-528 |
1.44e-47 |
|
Pilus retraction ATPase PilT; Pilus retraction ATPase PilT is a nucleotide-binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Pssm-ID: 410875 [Multi-domain] Cd Length: 223 Bit Score: 165.40 E-value: 1.44e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 319 KPQGMLLITGPTGSGKTVSLYTGLNILN-TESSNISTAEDPVEINLEG----INQVNVNPKVgLTFAAALKSFLRQDPDI 393
Cdd:cd01131 19 KPRGLVLVTGPTGSGKSTTLAAMIDYINeTRSKHIITIEDPIEFVHKHkkslINQREVGRDT-ESFAAALRAALREDPDV 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 394 IMVGEIRDLETAEIAIKAAQTGHMVMSTLHTNSAPETLTRLRNMgVPS-------FNIATSVNLVIAQRLARrlcsqcki 466
Cdd:cd01131 98 ILVGEMRDLETIELALTAAETGHLVFSTLHTNSAAQTIDRIIDV-FPPeqqeqvrIQLASSLRGVISQRLLP-------- 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1428898976 467 padipkqsllemgfteqdlahpdfrvfqpvgcsecREGYKGRVGIYEVMKVTPEISKIIMED 528
Cdd:cd01131 169 -----------------------------------KKDGGGRVAAFEILINTPAIRNLIREG 195
|
|
| type_II_IV_secretion_ATPases |
cd19477 |
type II/type IV hexameric secretion ATPases; RecA-like NTPases. This family includes the NTP ... |
322-460 |
3.21e-33 |
|
type II/type IV hexameric secretion ATPases; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410885 [Multi-domain] Cd Length: 168 Bit Score: 124.81 E-value: 3.21e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 322 GMLLITGPTGSGKTVSLYTGLNILNTESsNISTAEDPVEINL---EGINQVNVNPKVglTFAAALKSFLRQDPDIIMVGE 398
Cdd:cd19477 11 KNVIVCGGTGSGKTTYIKSILEFIPKEE-RIISIEDTEEIVFkhhKNYTQLFFGGNI--TSADCLKSCLRQRPDRIILGE 87
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1428898976 399 IRDlETAEIAIKAAQTGH-MVMSTLHTNSAPETLTRLRNMGVPS------------FNIATSVNLVIAQRLARRL 460
Cdd:cd19477 88 LRS-SEAYDFYNVLCSGHkGTLTTLHAGSSEEAFIRLAN*SSSNsaarnikfesliEGFKDLIDGIVHINHHKQC 161
|
|
| PilU |
COG5008 |
Type IV pilus assembly protein, ATPase PilU [Cell motility, Extracellular structures]; |
190-459 |
2.41e-32 |
|
Type IV pilus assembly protein, ATPase PilU [Cell motility, Extracellular structures];
Pssm-ID: 444032 Cd Length: 370 Bit Score: 127.91 E-value: 2.41e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 190 INKLLIDAIRMGASDL----HFEPYeksyrvrYRVDGVLRQIANPPL---QLANRLASrlkVMSQMDISEkrVPQDGRIK 262
Cdd:COG5008 3 LEDLLKLMVEKKASDLfitaGAPPS-------IKIDGKLTPLSQQPLtpeQVRELAYS---IMNEEQREE--FERTKECN 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 263 LKLSKSKAIDFRVNslptLFGEK----LVLR-----IldPSsamlgIDALGYEEDQKALFMEaldkPQGMLLITGPTGSG 333
Cdd:COG5008 71 FAISLPGVGRFRVN----AFRQRgsvgMVLRrieteI--PT-----LDELGLPPVLKDLIME----KRGLVLFVGATGSG 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 334 KTVSLYTGLNILNTESSN-ISTAEDPVE--------InlegINQvnvnPKVGL---TFAAALKSFLRQDPDIIMVGEIRD 401
Cdd:COG5008 136 KSTTLAAMIDHRNENSSGhILTIEDPIEfvhkhkksI----VTQ----REVGVdteSYEVALKNALRQAPDVILIGEIRD 207
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1428898976 402 LETAEIAIKAAQTGHMVMSTLHTNSAPETLTRLRNMgVPSFNIAT-----SVNL--VIAQRLARR 459
Cdd:COG5008 208 RETMEHAIAFAETGHLCLATLHANNANQALDRIINF-FPEERRPQllmdlSLNLraIVSQRLVPT 271
|
|
| DotB_TraJ |
cd19516 |
dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of ... |
313-458 |
2.71e-30 |
|
dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of the type IVb secretion (T4bS) system, also known as the dot/icm system, and is the main energy supplier of the secretion system. It is an ATPase, similar to the VirB11 component of the T4aS systems. This family also includes Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ encoded on the tra (transfer) operon.
Pssm-ID: 410924 [Multi-domain] Cd Length: 179 Bit Score: 116.71 E-value: 2.71e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 313 FMEALDKPQGMLLITGPTGSGKTvSLYTGLN--ILNTESS--NISTAEDPVEINLEGIN-------QVNVnPKVGLTFAA 381
Cdd:cd19516 3 LVEALFPREGLVYVAGATGSGKS-TLLAAIYryILENDPPdrKIITYEDPIEFVYDGIKskhsiivQSQI-PRHFKSFAK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 382 ALKSFLRQDPDIIMVGEIRDLETAEIAIKAAQTGHMVMSTLHTNSAPETLTRLRNMGVPSFNIATSVNLV------IAQR 455
Cdd:cd19516 81 AVREALRRKPSLIGVGELRDQETISAAVEASLTGHPVYSTVHTKSVAETIRRLISLFPPEERDAAAYDLLstlrfiIVQR 160
|
...
gi 1428898976 456 LAR 458
Cdd:cd19516 161 LVR 163
|
|
| plasmid_TraJ |
TIGR02525 |
plasmid transfer ATPase TraJ; Members of this protein family are predicted ATPases associated ... |
259-458 |
3.61e-24 |
|
plasmid transfer ATPase TraJ; Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524). [Mobile and extrachromosomal element functions, Plasmid functions]
Pssm-ID: 131577 [Multi-domain] Cd Length: 372 Bit Score: 104.50 E-value: 3.61e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 259 GRIKLKlsKSKAIDFRVNSLPTLFGE-----KLVLRILdpSSAMLGIDALGYEEDqkaLFmEALDKPQGMLLITGPTGSG 333
Cdd:TIGR02525 90 GRYGLG--RGERVRFRCNFIQATIGKletaiSLTLRVI--PSDIPDLKQMGIEPD---LF-NSLLPAAGLGLICGETGSG 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 334 KTV---SLYTglNILNT-ESSNISTAEDPVEINLEGIN------QVNVNPKVGlTFAAALKSFLRQDPDIIMVGEIRDLE 403
Cdd:TIGR02525 162 KSTlaaSIYQ--HCGETyPDRKIVTYEDPIEYILGSPDdllppaQSQIGRDVD-SFANGIRLALRRAPKIIGVGEIRDLE 238
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1428898976 404 TAEIAIKAAQTGHMVMSTLHTNSAPETLTRLRNMGVP------SFNIATSVNLVIAQRLAR 458
Cdd:TIGR02525 239 TFQAAVLAGQSGHFCLGTLHVKSPGEAISRCLQMYPPemreaaAFDLLSILQYIIVQRLLR 299
|
|
| VirB11-like_ATPase |
cd01130 |
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, ... |
325-452 |
4.21e-20 |
|
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir (virulence) proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the bacterial Ti (tumor-inducing)-plasmid into plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11-related ATPases include Sulfolobus acidocaldarius FlaI, which plays key roles in archaellum (archaeal flagellum) assembly and motility functions, and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Pssm-ID: 410874 [Multi-domain] Cd Length: 177 Bit Score: 87.98 E-value: 4.21e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 325 LITGPTGSGKTvslyTGLNILNTESSN---ISTAEDPVEINLEGINQV------NVNPKVGLTFAAALKSFLRQDPDIIM 395
Cdd:cd01130 16 LISGGTGSGKT----TLLNALLSFIPPderIVTIEDTRELQLPHPNVVhlltrpGGGEKGEVTMADLLKAALRMRPDRII 91
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1428898976 396 VGEIRDLETAEiAIKAAQTGHM-VMSTLHTNSAPETLTRLRNMGVPSFN----------IATSVNLVI 452
Cdd:cd01130 92 VGEVRGGEAYD-MLQAMNTGHPgSITTIHANSAEDAIDRLATLVLEAGVnldeealrrlIASAIDVIV 158
|
|
| VirB11 |
COG0630 |
Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell ... |
322-459 |
5.08e-19 |
|
Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell motility, Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440395 [Multi-domain] Cd Length: 462 Bit Score: 90.14 E-value: 5.08e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 322 GMLLITGPTGSGKTvslyTGLN-ILNT--ESSNISTAEDPVEINL-------------EGINQVNVnpkvglTFAAALKS 385
Cdd:COG0630 291 KSVLVAGGTASGKT----TLLNaLLSFipPDAKIVTIEDTRELNLphenwislvtresFGGEEGDV------TMFDLLKA 360
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1428898976 386 FLRQDPDIIMVGEIRDLEtAEIAIKAAQTGHMVMSTLHTNSAPETLTRLRN--MGVPSFNIaTSVNLVIAQRLARR 459
Cdd:COG0630 361 ALRQRPDYIVVGEVRGEE-AYTLFQAMATGHGVLSTFHADSVESAINRLTSppINVPRTLL-QALDLVVFQKRVRV 434
|
|
| T2SSE_N |
pfam05157 |
Type II secretion system (T2SS), protein E, N-terminal domain; This domain is found at the ... |
46-152 |
6.25e-18 |
|
Type II secretion system (T2SS), protein E, N-terminal domain; This domain is found at the N-terminus of members of the Type II secretion system protein E. Proteins in this subfamily are typically involved in Type 4 pilus biogenesis, though some are involved in other processes; for instance aggregation in Myxococcus xanthus. The structure of this domain is now known.
Pssm-ID: 428339 [Multi-domain] Cd Length: 108 Bit Score: 79.30 E-value: 6.25e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 46 LIEEVHLSPSLLAETISAEFAEPYFDLDVYDTSQIPKDLVDQKLILKHRILPLIQRGQILYVATSNPSNIEAIDAIRFNS 125
Cdd:pfam05157 1 LVELGLLSEEQLAQALAEQLGLPFVDLEALEIDPELLRLLPREFARRHRVLPLREDGGTLVVAVADPLDLALLDELRFLT 80
|
90 100
....*....|....*....|....*..
gi 1428898976 126 KLLVEPVIVEHHKLEKVLGQHFAEESS 152
Cdd:pfam05157 81 GKRVEPVLATPSDIRRALERLYGSEES 107
|
|
| CpaF |
COG4962 |
Pilus assembly protein, ATPase of CpaF family [Intracellular trafficking, secretion, and ... |
324-458 |
9.00e-16 |
|
Pilus assembly protein, ATPase of CpaF family [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 443988 [Multi-domain] Cd Length: 386 Bit Score: 79.44 E-value: 9.00e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 324 LLITGPTGSGKTvslyTGLNILnteSSNIS------TAEDPVEINLEGINQV-------NVNPKVGLTFAAALKSFLRQD 390
Cdd:COG4962 185 ILVSGGTGSGKT----TLLNAL---SGFIPpderivTIEDAAELQLQHPHVVrletrppNVEGAGEVTLRDLVRNALRMR 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 391 PDIIMVGEIRDletAEIA--IKAAQTGH-MVMSTLHTNSAPETLTRLRNMG------VPSFN----IATSVNLVIAQRLA 457
Cdd:COG4962 258 PDRIIVGEVRG---AEALdmLQAMNTGHdGSMSTLHANSARDALARLETLAlmagenLPREAvrrqIASAIDLVVHLERL 334
|
.
gi 1428898976 458 R 458
Cdd:COG4962 335 R 335
|
|
| PRK13894 |
PRK13894 |
conjugal transfer ATPase TrbB; Provisional |
324-437 |
3.17e-10 |
|
conjugal transfer ATPase TrbB; Provisional
Pssm-ID: 184377 Cd Length: 319 Bit Score: 61.68 E-value: 3.17e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 324 LLITGPTGSGKTVSLYTGLN--ILNTESSNISTAEDPVEINLEGINQVNVNPKVGLTFAAALKSFLRQDPDIIMVGEIRD 401
Cdd:PRK13894 151 ILVIGGTGSGKTTLVNAIINemVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGEVRG 230
|
90 100 110
....*....|....*....|....*....|....*..
gi 1428898976 402 LETAEIaIKAAQTGHM-VMSTLHTNSAPETLTRLRNM 437
Cdd:PRK13894 231 PEALDL-LMAWNTGHEgGAATLHANNAKAGLDRLKSL 266
|
|
| VirB11 |
TIGR02788 |
P-type DNA transfer ATPase VirB11; The VirB11 protein is found in the vir locus of ... |
324-437 |
1.03e-09 |
|
P-type DNA transfer ATPase VirB11; The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Pssm-ID: 274301 Cd Length: 308 Bit Score: 60.06 E-value: 1.03e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 324 LLITGPTGSGKTVSLYTGLNILNTEsSNISTAEDPVEINLEGINQVN-VNPKVG-----LTFAAALKSFLRQDPDIIMVG 397
Cdd:TIGR02788 147 IIISGGTGSGKTTFLKSLVDEIPKD-ERIITIEDTREIFLPHPNYVHlFYSKGGqglakVTPKDLLQSCLRMRPDRIILG 225
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1428898976 398 EIRDLETAEIaIKAAQTGHM-VMSTLHTNSAPETLTRLRNM 437
Cdd:TIGR02788 226 ELRGDEAFDF-IRAVNTGHPgSITTLHAGSPEEAFEQLALM 265
|
|
| PRK13833 |
PRK13833 |
conjugal transfer protein TrbB; Provisional |
307-434 |
8.11e-09 |
|
conjugal transfer protein TrbB; Provisional
Pssm-ID: 172360 [Multi-domain] Cd Length: 323 Bit Score: 57.50 E-value: 8.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 307 EDQKALFMEALDKPQGMLlITGPTGSGKTvslyTGLN------ILNTESSNISTAEDPVEINLEGINQVNVNPKVGLTFA 380
Cdd:PRK13833 131 EAQASVIRSAIDSRLNIV-ISGGTGSGKT----TLANaviaeiVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMA 205
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1428898976 381 AALKSFLRQDPDIIMVGEIRDlETAEIAIKAAQTGHM-VMSTLHTNSAPETLTRL 434
Cdd:PRK13833 206 RLLKSTMRLRPDRIIVGEVRD-GAALTLLKAWNTGHPgGVTTIHSNTAMSALRRL 259
|
|
| PRK13851 |
PRK13851 |
type IV secretion system protein VirB11; Provisional |
313-423 |
1.03e-04 |
|
type IV secretion system protein VirB11; Provisional
Pssm-ID: 172375 Cd Length: 344 Bit Score: 44.50 E-value: 1.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1428898976 313 FMEALDKPQGMLLITGPTGSGKTVSLYTGLNILNTESSNIsTAEDPVEINLEGINQVN-VNPKVGLTFAAA-----LKSF 386
Cdd:PRK13851 154 FLHACVVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLI-TIEDTLELVIPHENHVRlLYSKNGAGLGAVtaehlLQAS 232
|
90 100 110
....*....|....*....|....*....|....*...
gi 1428898976 387 LRQDPDIIMVGEIRDlETAEIAIKAAQTGHM-VMSTLH 423
Cdd:PRK13851 233 LRMRPDRILLGEMRD-DAAWAYLSEVVSGHPgSISTIH 269
|
|
| |
