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Conserved domains on  [gi|142886744|gb|ABO92879|]
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NADH dehydrogenase subunit 5, partial (mitochondrion) [Machaerocera mexicana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND5 super family cl33362
NADH dehydrogenase subunit 5; Provisional
 1-205 7.70e-64

NADH dehydrogenase subunit 5; Provisional


The actual alignment was detected with superfamily member MTH00165:

Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 206.92  E-value: 7.70e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886744   1 LFMCAG*MIHNLSDYQDIR*MGSVTSFMPLT*ICFNV*SLSLCGMPFLAGFYSKDLILEIVCMSWINQLIFFLYFISTGL 80
Cdd:MTH00165 308 LFLCAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGL 387

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886744  81 TASYSFRLFYYSMSGDNNFYSSFSFNDSSYYISFSMIGLLIVAIFGGGLLSWLLFPIPYLVVLPFYYKFLTIFVIILGSY 160
Cdd:MTH00165 388 TVSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGW 467

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 142886744 161 FGYFIFNMGLMHILLSLNFMFFINFAGSMWFMPFISTNYISYLPL 205
Cdd:MTH00165 468 LGYELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPL 512
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-205 7.70e-64

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 206.92  E-value: 7.70e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886744   1 LFMCAG*MIHNLSDYQDIR*MGSVTSFMPLT*ICFNV*SLSLCGMPFLAGFYSKDLILEIVCMSWINQLIFFLYFISTGL 80
Cdd:MTH00165 308 LFLCAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGL 387

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886744  81 TASYSFRLFYYSMSGDNNFYSSFSFNDSSYYISFSMIGLLIVAIFGGGLLSWLLFPIPYLVVLPFYYKFLTIFVIILGSY 160
Cdd:MTH00165 388 TVSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGW 467

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 142886744 161 FGYFIFNMGLMHILLSLNFMFFINFAGSMWFMPFISTNYISYLPL 205
Cdd:MTH00165 468 LGYELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPL 512
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 84-205 1.08e-23

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 92.61  E-value: 1.08e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886744   84 YSFRLFYYSMSGDNNFYSSFSFNDSSYYISFSMIGLLIVAIFGGGLLSWLLFPIPYLVVLPFYYKFLTIFVIILGSYFGY 163
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 142886744  164 FIFNMGLMHILLSLNFMFFiNFAGSMWFMPFISTNYISYLPL 205
Cdd:pfam06455  81 ELSNLSNKQLKKSLNFNLH-SFSGSMWFFPNLSHRLIPKLSL 121
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-166 4.67e-18

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 81.35  E-value: 4.67e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886744   1 LFMCAG*MIHNLSDyQDIR*MGSVTSFMPLT*ICFNV*SLSLCGMPFLAGFYSKDLILE-IVCMSWINQLIFFLYFISTG 79
Cdd:COG1009  340 LFLGAGSVIHATGT-RDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAF 418

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886744  80 LTASYSFRLFYYSMSGDNNFYSSFSFNDSSYYISFSMIGLLIVAIFGGGLLSWLL---------FPIPYLVVLPFYYKFL 150
Cdd:COG1009  419 LTAFYSFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLLegllapaavLGGELHLAHGLLLNAL 498

                        170
                 ....*....|....*.
gi 142886744 151 TIFVIILGSYFGYFIF 166
Cdd:COG1009  499 PLLLSLLGIALGYLLY 514
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-205 7.70e-64

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 206.92  E-value: 7.70e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886744   1 LFMCAG*MIHNLSDYQDIR*MGSVTSFMPLT*ICFNV*SLSLCGMPFLAGFYSKDLILEIVCMSWINQLIFFLYFISTGL 80
Cdd:MTH00165 308 LFLCAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGL 387

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886744  81 TASYSFRLFYYSMSGDNNFYSSFSFNDSSYYISFSMIGLLIVAIFGGGLLSWLLFPIPYLVVLPFYYKFLTIFVIILGSY 160
Cdd:MTH00165 388 TVSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGW 467

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 142886744 161 FGYFIFNMGLMHILLSLNFMFFINFAGSMWFMPFISTNYISYLPL 205
Cdd:MTH00165 468 LGYELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPL 512
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 1-205 4.93e-40

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 143.44  E-value: 4.93e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886744   1 LFMCAG*MIHNLSDYQDIR*MGSVTSFMPLT*ICFNV*SLSLCGMPFLAGFYSKDLILEIVCMSWINQLIFFLYFISTGL 80
Cdd:MTH00151 305 LFLCAGSIIHSSSGTQDIRLLGSLFLSLPLTSGCLNISSLSLCGAPFLSGFYSKDLILESSLMSPTSLLMVLLMFVGVGL 384

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886744  81 TASYSFRLFYYSMSGDNNFYSSFSFNDSSYYISFSMIGLLIVAIFGGGLLSWLLFPIPYLVVLPFYYKFLTIFVIILGSY 160
Cdd:MTH00151 385 TALYSARLSFCLVWGSMKSSSLSSKSDEDFYVSLPMLLLSLGALIGGKLLQSLFEGFSEEFFLPSYLKLLIGFVILLGLF 464

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 142886744 161 FGYFIFNMGLMHILLSLNFMFFinfaGSMWFMPFISTNYISYLPL 205
Cdd:MTH00151 465 LSFGFWDSGFSSSKMVKLSFFF----SSMWFLSPLSSQPLKSLSL 505
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 1-203 2.21e-39

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 141.71  E-value: 2.21e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886744   1 LFMCAG*MIHNLSDYQDIR*MGSVTSFMPLT*ICFNV*SLSLCGMPFLAGFYSKDLILEIVCMSWINQLIFFLYFISTGL 80
Cdd:MTH00209 304 LFICAGNIIHSHGHSQDIRMVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTSL 383

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886744  81 TASYSFRLFYYSMSGDNNFYSSFSFNDSSYYISFSMIGLLIVAIFGGGLLSWLLFPIPYLVVLPFYYKFLTIFVIILGSY 160
Cdd:MTH00209 384 TAAYSMRLSYFSLWGPNSSKSLNSSFDQNKLNLKPMLVLTLGSITGGSVMSWVMVPSVNSVVLPWFLKLLPIMLILFGVL 463

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 142886744 161 FGYFIFNMGLMHIllslNFMFFINFAGSMWFMPFISTNYISYL 203
Cdd:MTH00209 464 LMYMVLKKNFFLI----KGYKVNYFLSQMWFLPDLSSQPVNKF 502
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 1-205 3.34e-35

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 130.27  E-value: 3.34e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886744   1 LFMCAG*MIHNLSDYQDIR*MGSVTSFMPLT*ICFNV*SLSLCGMPFLAGFYSKDLILEIVCMSWINQLIFFLYFISTGL 80
Cdd:MTH00207 308 LFVCAGSLIHSHHHSQDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESSLFYPHNSLMILMIFLATAL 387

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886744  81 TASYSFRLFYYSMSGDNNFYSSFSFNDSSYYISFSMIGLLIVAIFGGGLLSWLLFPIPYLVVLPFYYKFLTIFVIILGSY 160
Cdd:MTH00207 388 TAAYSTRFTLAVLWSPNSSSPYHHLEDEDKSLTTPMLLLTLGAITSGSALNWWLPTPQEEPILPLQYKLLPLLVVTLGAL 467

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 142886744 161 FGYFIFNMGLMHILLSLNFMFFINFAGSMWFMPFISTNYISYLPL 205
Cdd:MTH00207 468 LAWLFTTPNITKTPLLINNPLSHFASCLMWFLVPLSSQFIMSTPM 512
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 1-168 2.70e-29

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 113.72  E-value: 2.70e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886744   1 LFMCAG*MIHNLSDYQDIR*MGSVTSFMPLT*ICFNV*SLSLCGMPFLAGFYSKDLILEIVCMSWINQLIFFLYFISTGL 80
Cdd:MTH00004 338 LFLCSGSIIHNLNNEQDIRKMGGLQKTLPITSSCLTIGNLALMGTPFLSGFYSKDTIIETLNTSYLNAWALLLTLLATSF 417

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886744  81 TASYSFRLFYYSMSGDNNFYSSFSFNDSSYYISFSMIGLLIVAIFGGGLLSWLLFPI-PYLVVLPFYYKFLTIFVIILGS 159
Cdd:MTH00004 418 TAAYSLRMILLVQTGFPRTPPTTPINENTPTIINPITRLALGSILAGLLISSTILPTkTPPMTMPTTTKLAALIVTILGI 497


                 ....*....
gi 142886744 160 YFGYFIFNM 168
Cdd:MTH00004 498 LLALELSNM 506
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 1-203 6.44e-29

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 112.76  E-value: 6.44e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886744   1 LFMCAG*MIHNLSDYQDIR*MGSVTSFMPLT*ICFNV*SLSLCGMPFLAGFYSKDLILEIVCMSWINQLIFFLYFISTGL 80
Cdd:MTH00208 365 LFLCSGSIIHSLNNEQDLRKMGGLSFLLPVTSSCIILGSLALMGTPFLAGFYSKDLILEAGLASISNLLSIILALIATLL 444

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886744  81 TASYSFRLFYYSMSGDNNFYSSFSFNDSSYYISFSMIGLLIVAIFGGGLLSWLLFPIPYLVVlPFYYKFLTIFVIILGSY 160
Cdd:MTH00208 445 TAVYSFRIIFFCFLNNPSFSPLSPISEENPNLTNPLLRLAIGTIISGWFFSNFVFNLPPLTL-PLILKSLPLIVTIIGAA 523

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 142886744 161 FGYFIFNMGLMHILLSLNFMFFINfagsMWFMPFISTNYISYL 203
Cdd:MTH00208 524 FSFSFLLSLSSNPINSNFFSFLSN----QWFFVNISHSIIISF 562
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 1-205 4.80e-28

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 110.04  E-value: 4.80e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886744   1 LFMCAG*MIHNLSDYQDIR*MGSVTSFMPLT*ICFNV*SLSLCGMPFLAGFYSKDLILEIVCMSWINQLIFFLYFISTGL 80
Cdd:MTH00211 333 LFMCSGSIIHGLNNEQDIRKMGGLSKNLPFTSSCLFLGSLALMGFPFLSGFFSKDLILESMNGSYLNAWALLLTLLATSL 412

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886744  81 TASYSFRLFYYSMSGDNNFYSSFSFNDSSYYISFSMIGLLIVAIFGGGLLSWLLFPIPYLVV-LPFYYKFLTIFVIILGS 159
Cdd:MTH00211 413 TAAYSFRLIFLSLGGYPRFLSLSPINENYKLLKNPLKRLALGSILAGFIITSNLPPEKPEILsLPFLLKLMPLLVTIVGL 492

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 142886744 160 YFGYFIFNmgLMHILLSLNFMFFINFagsMWFMPFISTNYISYLPL 205
Cdd:MTH00211 493 LLGLELVN--LTHKQLKTSTLSFSNM---LGYYPPIIHRLLPKLSL 533
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 1-158 1.22e-27

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 109.17  E-value: 1.22e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886744   1 LFMCAG*MIHNLSDYQDIR*MGSVTSFMPLT*ICFNV*SLSLCGMPFLAGFYSKDLILEIVCMSWINQLIFFLYFISTGL 80
Cdd:MTH00108 339 LFMCSGSIIHNLNDEQDIRKMGGLFKTLPFTSTALIIGSLALTGMPFLTGFYSKDLIIEAANTSYTNAWALLITLIATSL 418

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886744  81 TASYSFRLFYYSMSGDNNFYSSFSFNDSSYYISFSMIGLLIVAIFGGGLLSWLLFP--IPyLVVLPFYYKFLTIFVIILG 158
Cdd:MTH00108 419 TAAYSTRIIFFALLGQPRFPPLITINENNPLLINPIKRLLLGSIFAGFLISNNIPPttIP-QMTMPLYLKLTALAVTILG 497
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 1-195 3.04e-27

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 108.07  E-value: 3.04e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886744   1 LFMCAG*MIHNLSDYQDIR*MGSVTSFMPLT*ICFNV*SLSLCGMPFLAGFYSKDLILEIVCMSWINQLIFFLYFISTGL 80
Cdd:MTH00066 336 LFLCSGSIIHSLNDEQDIRKMGGLQKALPITTSCLTIGSLALTGTPFLAGFFSKDAIIEAMNTSNLNSWALILTLIATSF 415

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886744  81 TASYSFRLFYYSMSGDNNFYSSFSFNDSSYYISFSMIGLLIVAIFGGGLLSWLLFPI-PYLVVLPFYYKFLTIFVIILGS 159
Cdd:MTH00066 416 TAVYSFRIIYFSSMKFPRSLPLSPINENNPLIINPIKRLAWGSIIAGLLIIFNILPMkPQILTMPTFMKLAALLVTLLGL 495

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 142886744 160 YFGYFIFNMGLMHILLSLNFMFFINFAgsmwFMPFI 195
Cdd:MTH00066 496 LIALDLAKITSKTTPKTKMHSFSNLLA----FFPTI 527
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 84-205 1.08e-23

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 92.61  E-value: 1.08e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886744   84 YSFRLFYYSMSGDNNFYSSFSFNDSSYYISFSMIGLLIVAIFGGGLLSWLLFPIPYLVVLPFYYKFLTIFVIILGSYFGY 163
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 142886744  164 FIFNMGLMHILLSLNFMFFiNFAGSMWFMPFISTNYISYLPL 205
Cdd:pfam06455  81 ELSNLSNKQLKKSLNFNLH-SFSGSMWFFPNLSHRLIPKLSL 121
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 1-93 4.64e-23

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 96.05  E-value: 4.64e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886744   1 LFMCAG*MIHNLSDYQDIR*MGSVTSFMPLT*ICFNV*SLSLCGMPFLAGFYSKDLILEIVCMSWINQLIFFLYFISTGL 80
Cdd:MTH00137 344 LFLCSGSIIHSLNDEQDIRKMGGLHHLTPFTSSCLTIGSLALTGTPFLAGFFSKDAIIEALNTSHLNAWALTLTLIATSF 423

                         90
                 ....*....|....
gi 142886744  81 TASYSFRL-FYYSM 93
Cdd:MTH00137 424 TAVYSLRVvFFVSM 437
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 1-167 4.90e-20

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 87.37  E-value: 4.90e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886744   1 LFMCAG*MIHNLSDYQDIR*MGSVTSFMPLT*ICFNV*SLSLCGMPFLAGFYSKDLILEIVCMSWINQLIFFLYFISTGL 80
Cdd:MTH00210 340 LFLSAGSVIHAVSDEQDMRKMGGLIKSIPFTYVMILIGSLSLMGFPYLTGFYSKDLILELTYDKYYIAFAYWLGSFSALL 419

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886744  81 TASYSFRLFYYSMSGDNNFYSSFSFN--DSSYYISFSMIGLLIVAIFGGGLLSWLLFPIPYLVVLPFYYKFLTIFVIILG 158
Cdd:MTH00210 420 TAFYSIRLIYLTFITNTNSKKEVFIGvhESSWNITFPLLLLAFGSIFVGYLGKEVVLSNVIPPIVPNSIKMIPLLFSLLG 499


                 ....*....
gi 142886744 159 SYFGYFIFN 167
Cdd:MTH00210 500 ALLAFVIYN 508
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 1-203 2.11e-19

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 85.51  E-value: 2.11e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886744   1 LFMCAG*MIHNLSDYQDIR*MGSVTSFMPLT*ICFNV*SLSLCGMPFLAGFYSKDLILEIVCMSWINQLIFFLYFISTGL 80
Cdd:MTH00020 339 LFLSAGSVIHALSDEQDMRKMGGLISFLPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSALL 418

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886744  81 TASYSFRLFYYS-MSGDNNFYSSFSF-NDSSYYISFSMIGLLIVAIFGGGLLSWLL--FPIPYLVVLPFYYKFLTIFVII 156
Cdd:MTH00020 419 TAFYSIRLIYLTfLSNTNLKKAVFFHlHEGDWNLLLPLGILALGSIFVGYLAKEMIwsFQITLPPIVPLSIKLLPVFLSL 498

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 142886744 157 LGSYFGYFIFNMglmhilLSLNFMFFINFAGSMWFMPFISTNYISYL 203
Cdd:MTH00020 499 GGIGLVIILYFY------SSKTFRVPFSFIGRNSYTFLGSAWQFNYI 539
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 1-166 4.76e-19

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 84.44  E-value: 4.76e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886744   1 LFMCAG*MIHNLSDYQDIR*MGSVTSFMPLT*ICFNV*SLSLCGMPFLAGFYSKDLILEiVCMSWINQLIFFLYFISTGL 80
Cdd:PRK06590 346 LFLGAGSVIHAMHHEQDIRKMGGLRKKMPVTYATFLIGTLALIGIPPFAGFFSKDEILE-AAFANGHINLFVAGLVGAFL 424

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886744  81 TASYSFRLFYYSMSGDNNfYSSFSFNDSSYYISFSMIGLLIVAIFGG-----GLLSWLLFP-----IPYLVVLPFYYKFL 150
Cdd:PRK06590 425 TAFYSFRLIFLVFHGKEK-EKIHHPHESPAVMTLPLIVLAVLSVFAGalivpPFLGVLPLTtelahGEAEHHLPVWVALL 503

                        170
                 ....*....|....*.
gi 142886744 151 TIFVIILGSYFGYFIF 166
Cdd:PRK06590 504 PLVVALAGIALAWLLY 519
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-166 4.67e-18

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 81.35  E-value: 4.67e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886744   1 LFMCAG*MIHNLSDyQDIR*MGSVTSFMPLT*ICFNV*SLSLCGMPFLAGFYSKDLILE-IVCMSWINQLIFFLYFISTG 79
Cdd:COG1009  340 LFLGAGSVIHATGT-RDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAF 418

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886744  80 LTASYSFRLFYYSMSGDNNFYSSFSFNDSSYYISFSMIGLLIVAIFGGGLLSWLL---------FPIPYLVVLPFYYKFL 150
Cdd:COG1009  419 LTAFYSFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLLegllapaavLGGELHLAHGLLLNAL 498

                        170
                 ....*....|....*.
gi 142886744 151 TIFVIILGSYFGYFIF 166
Cdd:COG1009  499 PLLLSLLGIALGYLLY 514
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
1-96 5.16e-15

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 72.75  E-value: 5.16e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886744   1 LFMCAG*MIHNLSDY--------QDIR*MGSVTSFMPLT*ICFNV*SLSLCGMPFLAGFYSKDLILEIVCMSwiNQLIFF 72
Cdd:PRK07376 356 LFLGSGSVIHGMEEVvghdpvlaQDMRLMGGLRKYMPITAITFLIGCLAISGIPPFAGFWSKDEILGAAFEA--NPALWF 433

                         90       100
                 ....*....|....*....|....
gi 142886744  73 LYFISTGLTASYSFRLFYYSMSGD 96
Cdd:PRK07376 434 VGFLTAGMTAFYMFRMYFLTFEGE 457
ndhF CHL00025
NADH dehydrogenase subunit 5
 1-118 1.33e-09

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 56.82  E-value: 1.33e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886744   1 LFMCAG*MIHNL--------SDYQDIR*MGSVTSFMPLT*ICFNV*SLSLCGMPFLAGFYSKDlilEIVCMSWINQLIF- 71
Cdd:CHL00025 356 LFLGSGSVIHSMepivgyspDKSQNMVLMGGLRKYMPITKTTFLLGTLSLCGIPPLACFWSKD---EILNDSWLYSPIFa 432

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 142886744  72 FLYFISTGLTASYSFRLFYYSMSGDNNFYS-SFSFNDSSYYISFSMIG 118
Cdd:CHL00025 433 IIAWSTAGLTAFYMFRIYLLTFEGHLRVHFqNYSGKKNSSFYSISLWG 480
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 1-60 8.27e-08

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 51.50  E-value: 8.27e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 142886744   1 LFMCAG*MIHNLS-DYQDIR*MGSVTSFMPLT*ICFNV*SLSLCGMPFLAGFYSKDLILEI 60
Cdd:MTH00032 355 LFLSAGSVIHSTTvDEQDMRKMGGLIHSIPFTYTMMLIGSFSIMGLPYLTGFYSKDLILEL 415
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-77 1.77e-07

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 50.00  E-value: 1.77e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 142886744    1 LFMCAG*MIHNLSDYQDIR*MGSVTSFMPLT*ICFNV*SLSLCGMPFLAGFYSKDLILEIVCMSWINQLIFFLYFIS 77
Cdd:pfam00361 215 LFLCAGSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 1-91 5.38e-06

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 45.91  E-value: 5.38e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886744   1 LFMCAG*MIHNLsDYQDIR*MGSVTSFMPLT*ICFNV*SLSLCGMPFLAGFYSKDLILEIVcMSWINQLIFFLYFISTGL 80
Cdd:COG0651  340 LFLAAGAIERAT-GTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAA-LEAGAWLLAAVLLLSSLL 417

                         90
                 ....*....|.
gi 142886744  81 TASYSFRLFYY 91
Cdd:COG0651  418 TLAYFVRIFGR 428
ND5 MTH00095
NADH dehydrogenase subunit 5; Provisional
 1-185 7.34e-06

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177158 [Multi-domain]  Cd Length: 527  Bit Score: 45.68  E-value: 7.34e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886744   1 LFMCAG*MIHNLSDYQDIR*MGSVTSFMPLT*ICFNV*SLSLCGMPFLAGFYSKDLILEIVCMSWINQLIFFLYFISTGL 80
Cdd:MTH00095 292 LFMQVGYLIHSNFGQQDGRNYSNNGNLPMFIQLQLLVTLFCLCGLMFTSGMVSKELILELFFFNNYMIFFSLMFFFSVFL 371

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886744  81 TASYSFRLFyysMSGDNNFYSSFSFNDSSYYISFSMIGLLIVAIFgggLLSWLLFPIPYLVVLPFYYKFLTIFVIILgsy 160
Cdd:MTH00095 372 TFGYSYRLW---KSFFLSFSKVVNVYSSSVLMNFLSLMLVFFSVF---FLWWLNFNLLNLPSLFLYLDFYVPLFYLF--- 442

                        170       180
                 ....*....|....*....|....*
gi 142886744 161 FGYFIFNMGLMHILLSLNFMFFINF 185
Cdd:MTH00095 443 MIMLFSFFFFKLLFKELKYKFFVDY 467
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
 1-82 6.45e-05

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 42.97  E-value: 6.45e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886744   1 LFMCAG*MIHNLSDyQDIR*MGSVTSFMPLT*ICFNV*SLSLCGMPFLAGFYSkdlILEIVCMSWINQLIFFLYFIST-G 79
Cdd:PRK07390 349 LFMSVGSIILTTIT-QDLTELGGLWSRMPATTLAFLVGSAGLVALLPLGGFWA---LLRLADGLWAVSPWLVGVLLLVnA 424


                 ...
gi 142886744  80 LTA 82
Cdd:PRK07390 425 LTA 427
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-91 8.51e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 39.48  E-value: 8.51e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886744   1 LFMCAG*MIHNlSDYQDIR*MGSVTSFMPLT*ICFNV*SLSLCGMPFLAGFYSK-DLILEIVCMSWINQLIFFLyfISTG 79
Cdd:PRK08375 339 LFLAAGAIEVT-YGTRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKwYLVVGAVEAGQWLVLAVLL--ASSL 415

                         90
                 ....*....|..
gi 142886744  80 LTASYSFRLFYY 91
Cdd:PRK08375 416 LALLYFLRIWYR 427
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-90 2.97e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 37.77  E-value: 2.97e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886744   1 LFMCAG*MIHNLSDyQDIR*MGSVTSFMPLT*ICFNV*SLSLCGMPFLAGFYSKDLILEIVCMswINQLIFFLYFISTGL 80
Cdd:PRK08376 367 LFLTAGAVIYETGT-RNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESSAL--FNPILGVIAMIGSVL 443

                         90
                 ....*....|
gi 142886744  81 TASYSFRLFY 90
Cdd:PRK08376 444 TLASFVKVFH 453
PRK12650 PRK12650
DUF4040 family protein;
1-88 4.60e-03

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 37.33  E-value: 4.60e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886744   1 LFMCAG*MIHNlSDYQDIR*MGSVTSFMPLT*ICFNV*SLSLCGMPFLAGFYSKDLILEIVCMSWINQLIFFLYFISTGL 80
Cdd:PRK12650 340 LFMLIGVVDHQ-AGTRDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSKEGMLTAFLEAPGGNAGVVLLLVGAAL 418

                         90
                 ....*....|..
gi 142886744  81 TA----SYSFRL 88
Cdd:PRK12650 419 GAvftfAYSARL 430
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-137 5.82e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 36.87  E-value: 5.82e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886744   1 LFMCAG*MIHNlSDYQDIR*MGSVTSFMPLT*ICFNV*SLSLCGMPFLAGFYSKDLILEIVCMSwiNQLIFFLY-FISTG 79
Cdd:PRK12667 363 LFLASGVFIHA-AGTRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLES--GFYLPALVlLIASA 439

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 142886744  80 LTASYSFRLFyYSMSGDNNFYSSFSFNDSSYYISFSMIGLLIVAIFGGGLLSWLLFPI 137
Cdd:PRK12667 440 ISLVGYFRAW-YSLFFGKPKSGEEVEHKESPSMSVVILVLALAVLILGILALFLPEIL 496
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
1-58 6.77e-03

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 36.80  E-value: 6.77e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 142886744   1 LFMCAG*MIH-----NLSDyqdir*MGSVTSFMPLT*ICFNV*SLSLCGMPFLAGFYSKDLIL 58
Cdd:PRK12668 308 LFMSAGAVLYrtgteKLTE------LGGLYRSMPLTALFCLVGALSISAFPLFSGFVSKSMII 364
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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