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Conserved domains on  [gi|142886740|gb|ABO92877|]
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NADH dehydrogenase subunit 5, partial (mitochondrion) [Acrotylus patruelis]

Protein Classification

NADH dehydrogenase subunit 5( domain architecture ID 11475935)

NADH dehydrogenase subunit 5 (ND5/NADH5) is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain; the immediate electron acceptor for the enzyme is believed to be ubiquinone

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-212 7.21e-71

NADH dehydrogenase subunit 5; Provisional


:

Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 225.41  E-value: 7.21e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886740   1 LFMCAGSMIHNLNDSQDIRFMGSIINFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVSLSWVNFLIFFLYFFSTGL 80
Cdd:MTH00165 308 LFLCAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGL 387

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886740  81 TASYSFRLFYYSMFGDNNYYSVSSFNDSSYFISFGMIGLLIVVVFGGSFLSWLIFPIPYVIVLPMYLKLLTLFVIIFGSY 160
Cdd:MTH00165 388 TVSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGW 467

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 142886740 161 FGYIISDFGYSYNLLSLNFMSFVSFAGSMWFMPFLSTNYISYLPLSYGYYSS 212
Cdd:MTH00165 468 LGYELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSL 519
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-212 7.21e-71

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 225.41  E-value: 7.21e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886740   1 LFMCAGSMIHNLNDSQDIRFMGSIINFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVSLSWVNFLIFFLYFFSTGL 80
Cdd:MTH00165 308 LFLCAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGL 387

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886740  81 TASYSFRLFYYSMFGDNNYYSVSSFNDSSYFISFGMIGLLIVVVFGGSFLSWLIFPIPYVIVLPMYLKLLTLFVIIFGSY 160
Cdd:MTH00165 388 TVSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGW 467

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 142886740 161 FGYIISDFGYSYNLLSLNFMSFVSFAGSMWFMPFLSTNYISYLPLSYGYYSS 212
Cdd:MTH00165 468 LGYELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSL 519
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 84-212 8.46e-27

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 101.09  E-value: 8.46e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886740   84 YSFRLFYYSMFGDNNYYSVSSFNDSSYFISFGMIGLLIVVVFGGSFLSWLIFPIPYVIVLPMYLKLLTLFVIIFGSYFGY 163
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 142886740  164 IISDFGYSYNLLSLNFMSFvSFAGSMWFMPFLSTNYISYLPLSYGYYSS 212
Cdd:pfam06455  81 ELSNLSNKQLKKSLNFNLH-SFSGSMWFFPNLSHRLIPKLSLKLGQKLA 128
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-165 1.86e-22

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 94.45  E-value: 1.86e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886740   1 LFMCAGSMIHNLNdSQDIRFMGSIINFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE-VVSLSWVNFLIFFLYFFSTG 79
Cdd:COG1009  340 LFLGAGSVIHATG-TRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAF 418

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886740  80 LTASYSFRLFYYSMFGDNNYYSVSSFNDSSYFISFGMIGLLIVVVFGGSFLSWL---------IFPIPYVIVLPMYLKLL 150
Cdd:COG1009  419 LTAFYSFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNAL 498

                        170
                 ....*....|....*
gi 142886740 151 TLFVIIFGSYFGYII 165
Cdd:COG1009  499 PLLLSLLGIALGYLL 513
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-212 7.21e-71

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 225.41  E-value: 7.21e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886740   1 LFMCAGSMIHNLNDSQDIRFMGSIINFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVSLSWVNFLIFFLYFFSTGL 80
Cdd:MTH00165 308 LFLCAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGL 387

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886740  81 TASYSFRLFYYSMFGDNNYYSVSSFNDSSYFISFGMIGLLIVVVFGGSFLSWLIFPIPYVIVLPMYLKLLTLFVIIFGSY 160
Cdd:MTH00165 388 TVSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGW 467

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 142886740 161 FGYIISDFGYSYNLLSLNFMSFVSFAGSMWFMPFLSTNYISYLPLSYGYYSS 212
Cdd:MTH00165 468 LGYELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSL 519
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 1-207 5.64e-44

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 154.42  E-value: 5.64e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886740   1 LFMCAGSMIHNLNDSQDIRFMGSIINFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVSLSWVNFLIFFLYFFSTGL 80
Cdd:MTH00209 304 LFICAGNIIHSHGHSQDIRMVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTSL 383

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886740  81 TASYSFRLFYYSMFGDNNYYSVSSFNDSSYFISFGMIGLLIVVVFGGSFLSWLIFPIPYVIVLPMYLKLLTLFVIIFGSY 160
Cdd:MTH00209 384 TAAYSMRLSYFSLWGPNSSKSLNSSFDQNKLNLKPMLVLTLGSITGGSVMSWVMVPSVNSVVLPWFLKLLPIMLILFGVL 463

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 142886740 161 FGYIisdfGYSYNLLSLNFMSFVSFAGSMWFMPFLSTNYISYLPLSY 207
Cdd:MTH00209 464 LMYM----VLKKNFFLIKGYKVNYFLSQMWFLPDLSSQPVNKFTMKL 506
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 1-206 1.71e-40

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 144.99  E-value: 1.71e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886740   1 LFMCAGSMIHNLNDSQDIRFMGSIINFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVSLSWVNFLIFFLYFFSTGL 80
Cdd:MTH00151 305 LFLCAGSIIHSSSGTQDIRLLGSLFLSLPLTSGCLNISSLSLCGAPFLSGFYSKDLILESSLMSPTSLLMVLLMFVGVGL 384

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886740  81 TASYSFRLFYYSMFGDNNYYSVSSFNDSSYFISFGMIGLLIVVVFGGSFLSWLIFPIPYVIVLPMYLKLLTLFVIIFGSY 160
Cdd:MTH00151 385 TALYSARLSFCLVWGSMKSSSLSSKSDEDFYVSLPMLLLSLGALIGGKLLQSLFEGFSEEFFLPSYLKLLIGFVILLGLF 464

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 142886740 161 FGYIISDFGYSynllSLNFMSFVSFAGSMWFMPFLSTNYISYLPLS 206
Cdd:MTH00151 465 LSFGFWDSGFS----SSKMVKLSFFFSSMWFLSPLSSQPLKSLSLK 506
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 1-205 2.55e-38

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 139.13  E-value: 2.55e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886740   1 LFMCAGSMIHNLNDSQDIRFMGSIINFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVSLSWVNFLIFFLYFFSTGL 80
Cdd:MTH00207 308 LFVCAGSLIHSHHHSQDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESSLFYPHNSLMILMIFLATAL 387

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886740  81 TASYSFRLFYYSMFGDNNYYSVSSFNDSSYFISFGMIGLLIVVVFGGSFLSWLIFPIPYVIVLPMYLKLLTLFVIIFGSY 160
Cdd:MTH00207 388 TAAYSTRFTLAVLWSPNSSSPYHHLEDEDKSLTTPMLLLTLGAITSGSALNWWLPTPQEEPILPLQYKLLPLLVVTLGAL 467

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 142886740 161 FGYIISDFGYSYNLLSLNFMSFVSFAGSMWFMPFLSTNYISYLPL 205
Cdd:MTH00207 468 LAWLFTTPNITKTPLLINNPLSHFASCLMWFLVPLSSQFIMSTPM 512
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 1-162 2.10e-33

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 125.66  E-value: 2.10e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886740   1 LFMCAGSMIHNLNDSQDIRFMGSIINFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVSLSWVNFLIFFLYFFSTGL 80
Cdd:MTH00004 338 LFLCSGSIIHNLNNEQDIRKMGGLQKTLPITSSCLTIGNLALMGTPFLSGFYSKDTIIETLNTSYLNAWALLLTLLATSF 417

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886740  81 TASYSFRLFYYSMFGDNNYYSVSSFNDSSYFISFGMIGLLIVVVFGGSFLSWLIFPI-PYVIVLPMYLKLLTLFVIIFGS 159
Cdd:MTH00004 418 TAAYSLRMILLVQTGFPRTPPTTPINENTPTIINPITRLALGSILAGLLISSTILPTkTPPMTMPTTTKLAALIVTILGI 497


                 ...
gi 142886740 160 YFG 162
Cdd:MTH00004 498 LLA 500
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 1-185 3.52e-33

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 125.08  E-value: 3.52e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886740   1 LFMCAGSMIHNLNDSQDIRFMGSIINFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVSLSWVNFLIFFLYFFSTGL 80
Cdd:MTH00208 365 LFLCSGSIIHSLNNEQDLRKMGGLSFLLPVTSSCIILGSLALMGTPFLAGFYSKDLILEAGLASISNLLSIILALIATLL 444

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886740  81 TASYSFRLFYYSMFGDNNYYSVSSFNDSSYFISFGMIGLLIVVVFGGSFLSWLIFPIPyVIVLPMYLKLLTLFVIIFGSY 160
Cdd:MTH00208 445 TAVYSFRIIFFCFLNNPSFSPLSPISEENPNLTNPLLRLAIGTIISGWFFSNFVFNLP-PLTLPLILKSLPLIVTIIGAA 523

                        170       180
                 ....*....|....*....|....*
gi 142886740 161 FGYIISdFGYSYNLLSLNFMSFVSF 185
Cdd:MTH00208 524 FSFSFL-LSLSSNPINSNFFSFLSN 547
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 1-212 1.69e-32

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 123.14  E-value: 1.69e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886740   1 LFMCAGSMIHNLNDSQDIRFMGSIINFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVSLSWVNFLIFFLYFFSTGL 80
Cdd:MTH00211 333 LFMCSGSIIHGLNNEQDIRKMGGLSKNLPFTSSCLFLGSLALMGFPFLSGFFSKDLILESMNGSYLNAWALLLTLLATSL 412

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886740  81 TASYSFRLFYYSMFGDNNYYSVSSFNDSSYFISFGMIGLLIVVVFGGSFLSWLIFPIPYVIV-LPMYLKLLTLFVIIFGS 159
Cdd:MTH00211 413 TAAYSFRLIFLSLGGYPRFLSLSPINENYKLLKNPLKRLALGSILAGFIITSNLPPEKPEILsLPFLLKLMPLLVTIVGL 492

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 142886740 160 YFGyiisdFGYSYNLLSLNFMSFVSFAGSMWFMPFLSTNYISYLPLSYGYYSS 212
Cdd:MTH00211 493 LLG-----LELVNLTHKQLKTSTLSFSNMLGYYPPIIHRLLPKLSLKWGQTLS 540
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 1-158 5.17e-32

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 121.88  E-value: 5.17e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886740   1 LFMCAGSMIHNLNDSQDIRFMGSIINFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVSLSWVNFLIFFLYFFSTGL 80
Cdd:MTH00108 339 LFMCSGSIIHNLNDEQDIRKMGGLFKTLPFTSTALIIGSLALTGMPFLTGFYSKDLIIEAANTSYTNAWALLITLIATSL 418

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886740  81 TASYSFRLFYYSMFGDNNYYSVSSFNDSSYFISFGMIGLLIVVVFGGSFLSWLIFP--IPyVIVLPMYLKLLTLFVIIFG 158
Cdd:MTH00108 419 TAAYSTRIIFFALLGQPRFPPLITINENNPLLINPIKRLLLGSIFAGFLISNNIPPttIP-QMTMPLYLKLTALAVTILG 497
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 1-158 5.69e-31

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 118.86  E-value: 5.69e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886740   1 LFMCAGSMIHNLNDSQDIRFMGSIINFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVSLSWVNFLIFFLYFFSTGL 80
Cdd:MTH00066 336 LFLCSGSIIHSLNDEQDIRKMGGLQKALPITTSCLTIGSLALTGTPFLAGFFSKDAIIEAMNTSNLNSWALILTLIATSF 415

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 142886740  81 TASYSFRLFYYSMFGDNNYYSVSSFNDSSYFISFGMIGLLIVVVFGGSFLSWLIFPI-PYVIVLPMYLKLLTLFVIIFG 158
Cdd:MTH00066 416 TAVYSFRIIYFSSMKFPRSLPLSPINENNPLIINPIKRLAWGSIIAGLLIIFNILPMkPQILTMPTFMKLAALLVTLLG 494
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 1-93 2.70e-27

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 108.38  E-value: 2.70e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886740   1 LFMCAGSMIHNLNDSQDIRFMGSIINFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVSLSWVNFLIFFLYFFSTGL 80
Cdd:MTH00137 344 LFLCSGSIIHSLNDEQDIRKMGGLHHLTPFTSSCLTIGSLALTGTPFLAGFFSKDAIIEALNTSHLNAWALTLTLIATSF 423

                         90
                 ....*....|....
gi 142886740  81 TASYSFRL-FYYSM 93
Cdd:MTH00137 424 TAVYSLRVvFFVSM 437
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 84-212 8.46e-27

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 101.09  E-value: 8.46e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886740   84 YSFRLFYYSMFGDNNYYSVSSFNDSSYFISFGMIGLLIVVVFGGSFLSWLIFPIPYVIVLPMYLKLLTLFVIIFGSYFGY 163
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 142886740  164 IISDFGYSYNLLSLNFMSFvSFAGSMWFMPFLSTNYISYLPLSYGYYSS 212
Cdd:pfam06455  81 ELSNLSNKQLKKSLNFNLH-SFSGSMWFFPNLSHRLIPKLSLKLGQKLA 128
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 1-163 8.93e-23

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 95.23  E-value: 8.93e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886740   1 LFMCAGSMIHNLNDSQDIRFMGSIINFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVsLSWVNFLIFFLYFFSTGL 80
Cdd:PRK06590 346 LFLGAGSVIHAMHHEQDIRKMGGLRKKMPVTYATFLIGTLALIGIPPFAGFFSKDEILEAA-FANGHINLFVAGLVGAFL 424

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886740  81 TASYSFRLFYYSMFGDNNYYSVSSfNDSSYFISFGMIGLLIVVVFGG-----SFLSWLIFPIPYVIV-----LPMYLKLL 150
Cdd:PRK06590 425 TAFYSFRLIFLVFHGKEKEKIHHP-HESPAVMTLPLIVLAVLSVFAGalivpPFLGVLPLTTELAHGeaehhLPVWVALL 503

                        170
                 ....*....|...
gi 142886740 151 TLFVIIFGSYFGY 163
Cdd:PRK06590 504 PLVVALAGIALAW 516
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-165 1.86e-22

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 94.45  E-value: 1.86e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886740   1 LFMCAGSMIHNLNdSQDIRFMGSIINFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE-VVSLSWVNFLIFFLYFFSTG 79
Cdd:COG1009  340 LFLGAGSVIHATG-TRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAF 418

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886740  80 LTASYSFRLFYYSMFGDNNYYSVSSFNDSSYFISFGMIGLLIVVVFGGSFLSWL---------IFPIPYVIVLPMYLKLL 150
Cdd:COG1009  419 LTAFYSFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNAL 498

                        170
                 ....*....|....*
gi 142886740 151 TLFVIIFGSYFGYII 165
Cdd:COG1009  499 PLLLSLLGIALGYLL 513
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 1-203 6.04e-22

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 93.22  E-value: 6.04e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886740   1 LFMCAGSMIHNLNDSQDIRFMGSIINFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVSLSWVNFLIFFLYFFSTGL 80
Cdd:MTH00020 339 LFLSAGSVIHALSDEQDMRKMGGLISFLPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSALL 418

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886740  81 TASYSFRLFYYSMFGDNNYYSVSSFN--DSSYFISFGMIGLLIVVVFGGSFLSWLI--FPIPYVIVLPMYLKLLTLFVII 156
Cdd:MTH00020 419 TAFYSIRLIYLTFLSNTNLKKAVFFHlhEGDWNLLLPLGILALGSIFVGYLAKEMIwsFQITLPPIVPLSIKLLPVFLSL 498

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 142886740 157 FGSYFGYIIsdfgysYNLLSLNFMSFVSFAGSMWFMPFLSTNYISYL 203
Cdd:MTH00020 499 GGIGLVIIL------YFYSSKTFRVPFSFIGRNSYTFLGSAWQFNYI 539
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 1-192 8.16e-22

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 92.76  E-value: 8.16e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886740   1 LFMCAGSMIHNLNDSQDIRFMGSIINFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVSLSWVNFLIFFLYFFSTGL 80
Cdd:MTH00210 340 LFLSAGSVIHAVSDEQDMRKMGGLIKSIPFTYVMILIGSLSLMGFPYLTGFYSKDLILELTYDKYYIAFAYWLGSFSALL 419

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886740  81 TASYSFRLFYYSMFGDNNYYSVSSFN--DSSYFISFGMIGLLIVVVFGGSFLSWLIFPIPYVIVLPMYLKLLTLFVIIFG 158
Cdd:MTH00210 420 TAFYSIRLIYLTFITNTNSKKEVFIGvhESSWNITFPLLLLAFGSIFVGYLGKEVVLSNVIPPIVPNSIKMIPLLFSLLG 499

                        170       180       190
                 ....*....|....*....|....*....|....
gi 142886740 159 SYFGYIISDFGYSYNLLSLNFMSFVSFAGSMWFM 192
Cdd:MTH00210 500 ALLAFVIYNSMVFLIKISRRGVSIRLYHVIYTFL 533
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
1-96 4.64e-16

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 75.83  E-value: 4.64e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886740   1 LFMCAGSMIHNLND--------SQDIRFMGSIINFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVSLSwvNFLIFF 72
Cdd:PRK07376 356 LFLGSGSVIHGMEEvvghdpvlAQDMRLMGGLRKYMPITAITFLIGCLAISGIPPFAGFWSKDEILGAAFEA--NPALWF 433

                         90       100
                 ....*....|....*....|....
gi 142886740  73 LYFFSTGLTASYSFRLFYYSMFGD 96
Cdd:PRK07376 434 VGFLTAGMTAFYMFRMYFLTFEGE 457
ndhF CHL00025
NADH dehydrogenase subunit 5
 1-103 1.35e-11

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 62.99  E-value: 1.35e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886740   1 LFMCAGSMIHNL--------NDSQDIRFMGSIINFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILevvSLSWVNFLIF- 71
Cdd:CHL00025 356 LFLGSGSVIHSMepivgyspDKSQNMVLMGGLRKYMPITKTTFLLGTLSLCGIPPLACFWSKDEIL---NDSWLYSPIFa 432

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 142886740  72 FLYFFSTGLTASYSFR-------------LFYYSMFGDNNYYSVS 103
Cdd:CHL00025 433 IIAWSTAGLTAFYMFRiylltfeghlrvhFQNYSGKKNSSFYSIS 477
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-77 2.66e-10

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 58.48  E-value: 2.66e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 142886740    1 LFMCAGSMIHNLNDSQDIRFMGSIINFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVSLSWVNFLIFFLYFFS 77
Cdd:pfam00361 215 LFLCAGSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 1-210 3.84e-10

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 58.82  E-value: 3.84e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886740   1 LFMCAGSMIHNLN-DSQDIRFMGSIINFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVV------------------ 61
Cdd:MTH00032 355 LFLSAGSVIHSTTvDEQDMRKMGGLIHSIPFTYTMMLIGSFSIMGLPYLTGFYSKDLILELTysgrnmgipfgssllkiq 434

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886740  62 ------------------SLSWVNFLIFFLYFFSTGLTASYSFRLFYYSMFGDNNYYSVSSFNDSSYFISFGMIGLLIVV 123
Cdd:MTH00032 435 gdigikkddrgsiggpegYPSRGSAFAFWLGTVAALLTAFYSIRLVYITFIISPNSPKESLISSHINIVDKRVLTVLSLL 514

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886740 124 VFGGSFLSWLIFPI-----------PYVIVLPMYLKLLTLFVIIFGSYFGYIISDFGYSYNLLSLNFMSFVSFAGSMWFM 192
Cdd:MTH00032 515 CFGAIFVGYLIQDIligdiehpivpPLIKVMPTLMGLFGMGLCLWAQKGTREGELYWGFDPIGPSFLLSIYSFLGGAWQG 594

                        250
                 ....*....|....*...
gi 142886740 193 PFLSTNYISYLPLSYGYY 210
Cdd:MTH00032 595 DHLINKLVAIPLFSFGHW 612
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 1-91 9.14e-09

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 54.38  E-value: 9.14e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886740   1 LFMCAGSMIHNLNdSQDIRFMGSIINFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEvVSLSWVNFLIFFLYFFSTGL 80
Cdd:COG0651  340 LFLAAGAIERATG-TRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQ-AALEAGAWLLAAVLLLSSLL 417

                         90
                 ....*....|.
gi 142886740  81 TASYSFRLFYY 91
Cdd:COG0651  418 TLAYFVRIFGR 428
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 1-134 5.80e-07

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 48.92  E-value: 5.80e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886740   1 LFMCAGSMIHNLNdSQDIRFMGSIINFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILevVSLSWVNFLIFFLYFFSTGL 80
Cdd:COG1008  343 LFLLVGVLYDRTH-TRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVL--LGAFQVNPWLAILAALGLIL 419

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 142886740  81 TASYSFRLFYYSMFGDNNyYSVSSFNDSSYFISFGMIGLLIVVVFGGSFLSWLI 134
Cdd:COG1008  420 TAAYLLWMYQRVFFGPLK-EELAELPDLNPRELAVLAPLAALILLLGLYPQPLL 472
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-137 1.04e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 48.43  E-value: 1.04e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886740   1 LFMCAGSMIHNLNdSQDIRFMGSIINFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVSLSWVNFLIFFLYFFSTgL 80
Cdd:PRK12667 363 LFLASGVFIHAAG-TRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASA-I 440

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 142886740  81 TASYSFRLFyYSMFGDNNYYSVSSFNDSSYFISFGMIGLLIVVVFGGSFLSWLIFPI 137
Cdd:PRK12667 441 SLVGYFRAW-YSLFFGKPKSGEEVEHKESPSMSVVILVLALAVLILGILALFLPEIL 496
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-95 3.87e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 46.80  E-value: 3.87e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886740   1 LFMCAGSMIHNLNdSQDIRFMGSIINFMPLTSVCFNVSSLSLCGMPFLAGFYSK-DLILEVVSLSWVNFLIFFLyfFSTG 79
Cdd:PRK08375 339 LFLAAGAIEVTYG-TRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKwYLVVGAVEAGQWLVLAVLL--ASSL 415

                         90
                 ....*....|....*.
gi 142886740  80 LTASYSFRLFYYSMFG 95
Cdd:PRK08375 416 LALLYFLRIWYRAFFG 431
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
 1-82 1.16e-05

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 45.29  E-value: 1.16e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886740   1 LFMCAGSMIHNlNDSQDIRFMGSIINFMPLTSVCFNVSSLSLCGMPFLAGFYSkdlILEVVSLSWVNFLIFFLYF-FSTG 79
Cdd:PRK07390 349 LFMSVGSIILT-TITQDLTELGGLWSRMPATTLAFLVGSAGLVALLPLGGFWA---LLRLADGLWAVSPWLVGVLlLVNA 424


                 ...
gi 142886740  80 LTA 82
Cdd:PRK07390 425 LTA 427
ND5 MTH00095
NADH dehydrogenase subunit 5; Provisional
 1-210 1.35e-05

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177158 [Multi-domain]  Cd Length: 527  Bit Score: 44.91  E-value: 1.35e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886740   1 LFMCAGSMIHNLNDSQDIRFMGSIINFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVSLSWVNFLIFFLYFFSTGL 80
Cdd:MTH00095 292 LFMQVGYLIHSNFGQQDGRNYSNNGNLPMFIQLQLLVTLFCLCGLMFTSGMVSKELILELFFFNNYMIFFSLMFFFSVFL 371

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886740  81 TASYSFRLFYYSMfgdNNYYSVSSFNDSSYFISFGMIGLLIVVVFggsFLSWLIFPIPYVIVLPMYLKLLTLFVIIFgsy 160
Cdd:MTH00095 372 TFGYSYRLWKSFF---LSFSKVVNVYSSSVLMNFLSLMLVFFSVF---FLWWLNFNLLNLPSLFLYLDFYVPLFYLF--- 442

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 142886740 161 FGYIISDFGYSYNLLSLNFMSFVSFAGSMWFMPFLSTNYISYLPLSYGYY 210
Cdd:MTH00095 443 MIMLFSFFFFKLLFKELKYKFFVDYFAKNVIYKLKNLKFFDLFLNKFGYK 492
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 1-122 2.15e-05

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 44.42  E-value: 2.15e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886740   1 LFMCAGSMIHNLNdSQDIRFMGSIINFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILevVSLSWVNFLIFFLYFFSTGL 80
Cdd:PRK05846 345 LFLLVGVLYDRLH-TRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTSGFVGEFLIL--LGSFQVNPVIAFIATTGLIL 421

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 142886740  81 TASYSFRLFYYSMFGD--NNYYSVSSFNDSSYFISFGMIGLLIV 122
Cdd:PRK05846 422 AAVYSLWLYQRVMFGPvkNEVAKLKDLNGRELLILLPLVALLLL 465
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
 1-95 1.14e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 42.48  E-value: 1.14e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886740   1 LFMCAGSMIHNlNDSQDIRFMGSIINFMPLTSVCFNVSSLSLCGMPFLAGFYSKDL----ILEVVSLSWVNFLIFFLYFF 76
Cdd:PRK12648 339 LFMAAGIIDHE-TGTRDMRRLSGLRRLMPITATLAMVAAAAMAGVPLLNGFLSKEMffaeTLDTHLLGSLDWLLPVAATL 417

                         90
                 ....*....|....*....
gi 142886740  77 STGLTASYSFRLFYYSMFG 95
Cdd:PRK12648 418 AGAFSVAYSLRFIHDVFFG 436
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-126 1.15e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 42.24  E-value: 1.15e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886740   1 LFMCAGSMIHnLNDSQDIRFMGSIINFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEvVSLSWVNFLIFFLYFFSTGL 80
Cdd:PRK07691 343 LFLLIGIMIK-ITGTTDLKKMGGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVE-GTFEAGFYVSGIIVLLSSLL 420

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 142886740  81 TASYSFRLFYYSMFGDNNYYSVSSFNDSSYFISFGMIGLLIVVVFG 126
Cdd:PRK07691 421 VLYSVIKIFLKGFWGEPKGYDLNNKVPVKKLLLPAVVLVAITILYG 466
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 1-59 1.78e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 41.64  E-value: 1.78e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 142886740   1 LFMCAGSMIHNLNDsQDIRFMGSIINFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 59
Cdd:PRK08667 349 LFLTAGSVVHATGT-RNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYE 406
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
1-165 1.87e-04

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 41.80  E-value: 1.87e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886740   1 LFMCAGSMIHNLNDSqDIRFMGSIINFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVV---SLSWVNFLiffLYFFS 77
Cdd:PRK12668 308 LFMSAGAVLYRTGTE-KLTELGGLYRSMPLTALFCLVGALSISAFPLFSGFVSKSMIISAAgedHYVWVWLL---LLLAS 383

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886740  78 TGLTASYSFRLFYYSMFGDNNYYSVssfNDSSYFISFGMIGLLIVVVFGGSFLSWLIFPIPYVIVLPMY--LKLLTLFVI 155
Cdd:PRK12668 384 AGTFLHFGIKLPYFAFFGGDSGLRV---KDAPRNMLVAMGIAAFLCIAIGVYPQALYALLPYPVDYEPYtaSHVLEQLQL 460

                        170
                 ....*....|
gi 142886740 156 IFGSYFGYII 165
Cdd:PRK12668 461 LLFTALAFVL 470
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 1-64 5.50e-04

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 40.26  E-value: 5.50e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 142886740   1 LFMCAGSMIHNLNdSQDIRFMGSIINFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVSLS 64
Cdd:PRK06521 355 LFLGAGAVLHATG-TRDMEKLGGLIRRMPWTAWAFLIGCLAISALPPLNGFVSEWLLLQSLLSS 417
PRK12650 PRK12650
DUF4040 family protein;
1-59 8.89e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 39.64  E-value: 8.89e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 142886740   1 LFMCAGSMIHNLNdSQDIRFMGSIINFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 59
Cdd:PRK12650 340 LFMLIGVVDHQAG-TRDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSKEGMLT 397
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-95 3.20e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 37.77  E-value: 3.20e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886740   1 LFMCAGSMIHNLNdSQDIRFMGSIINFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVSLswVNFLIFFLYFFSTGL 80
Cdd:PRK08376 367 LFLTAGAVIYETG-TRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESSAL--FNPILGVIAMIGSVL 443

                         90
                 ....*....|....*
gi 142886740  81 TASYSFRLFYYSMFG 95
Cdd:PRK08376 444 TLASFVKVFHTAFFG 458
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 1-61 6.11e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 37.21  E-value: 6.11e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 142886740   1 LFMCAGSMIHNLNdSQDIRFMGSIINFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVV 61
Cdd:PRK12647 327 LFMVAGIIDHETG-TRDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYEAL 386
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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