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Conserved domains on  [gi|142886738|gb|ABO92876|]
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NADH dehydrogenase subunit 5, partial (mitochondrion) [Heteropternis couloniana]

Protein Classification

NADH dehydrogenase subunit 5( domain architecture ID 11475935)

NADH dehydrogenase subunit 5 (ND5/NADH5) is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain; the immediate electron acceptor for the enzyme is believed to be ubiquinone

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-210 7.06e-70

NADH dehydrogenase subunit 5; Provisional


:

Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 222.71  E-value: 7.06e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886738   1 LFMCAGSMIHNLNDCQDIRFMGSIINFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILELVSLSWLNFLIFFFYFFSTGL 80
Cdd:MTH00165 308 LFLCAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGL 387

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886738  81 TASYSFRLFYYSISGDNNYYSIYLFDDKGYYISFSMISLLLVAVFGGSFLSWLIFPVPYVVVLPWYLKFMTLFVIILGSY 160
Cdd:MTH00165 388 TVSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGW 467

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 142886738 161 FGYIISDLGYSSNLFSLSFLSFISFIGSMWFMPFLSTNYVSYLPLSYGFI 210
Cdd:MTH00165 468 LGYELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSL 517
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-210 7.06e-70

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 222.71  E-value: 7.06e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886738   1 LFMCAGSMIHNLNDCQDIRFMGSIINFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILELVSLSWLNFLIFFFYFFSTGL 80
Cdd:MTH00165 308 LFLCAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGL 387

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886738  81 TASYSFRLFYYSISGDNNYYSIYLFDDKGYYISFSMISLLLVAVFGGSFLSWLIFPVPYVVVLPWYLKFMTLFVIILGSY 160
Cdd:MTH00165 388 TVSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGW 467

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 142886738 161 FGYIISDLGYSSNLFSLSFLSFISFIGSMWFMPFLSTNYVSYLPLSYGFI 210
Cdd:MTH00165 468 LGYELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSL 517
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 84-209 3.95e-26

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 99.16  E-value: 3.95e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886738   84 YSFRLFYYSISGDNNYYSIYLFDDKGYYISFSMISLLLVAVFGGSFLSWLIFPVPYVVVLPWYLKFMTLFVIILGSYFGY 163
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 142886738  164 IISDLGYSSNLFSLSFlSFISFIGSMWFMPFLSTNYVSYLPLSYGF 209
Cdd:pfam06455  81 ELSNLSNKQLKKSLNF-NLHSFSGSMWFFPNLSHRLIPKLSLKLGQ 125
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-165 1.07e-19

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 86.36  E-value: 1.07e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886738   1 LFMCAGSMIHNLNDcQDIRFMGSIINFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILE-LVSLSWLNFLIFFFYFFSTG 79
Cdd:COG1009  340 LFLGAGSVIHATGT-RDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAF 418

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886738  80 LTASYSFRLFYYSISGDNNYYSIYLFDDKGYYISFSMISLLLVAVFGGSFLSWL---------IFPVPYVVVLPWYLKFM 150
Cdd:COG1009  419 LTAFYSFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNAL 498

                        170
                 ....*....|....*
gi 142886738 151 TLFVIILGSYFGYII 165
Cdd:COG1009  499 PLLLSLLGIALGYLL 513
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-210 7.06e-70

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 222.71  E-value: 7.06e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886738   1 LFMCAGSMIHNLNDCQDIRFMGSIINFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILELVSLSWLNFLIFFFYFFSTGL 80
Cdd:MTH00165 308 LFLCAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGL 387

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886738  81 TASYSFRLFYYSISGDNNYYSIYLFDDKGYYISFSMISLLLVAVFGGSFLSWLIFPVPYVVVLPWYLKFMTLFVIILGSY 160
Cdd:MTH00165 388 TVSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGW 467

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 142886738 161 FGYIISDLGYSSNLFSLSFLSFISFIGSMWFMPFLSTNYVSYLPLSYGFI 210
Cdd:MTH00165 468 LGYELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSL 517
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 1-207 3.11e-41

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 146.71  E-value: 3.11e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886738   1 LFMCAGSMIHNLNDCQDIRFMGSIINFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILELVSLSWLNFLIFFFYFFSTGL 80
Cdd:MTH00209 304 LFICAGNIIHSHGHSQDIRMVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTSL 383

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886738  81 TASYSFRLFYYSISGDNNYYSIYLFDDKGYYISFSMISLLLVAVFGGSFLSWLIFPVPYVVVLPWYLKFMTLFVIILGSY 160
Cdd:MTH00209 384 TAAYSMRLSYFSLWGPNSSKSLNSSFDQNKLNLKPMLVLTLGSITGGSVMSWVMVPSVNSVVLPWFLKLLPIMLILFGVL 463

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 142886738 161 FGYIISDLGYssnlFSLSFLSFISFIGSMWFMPFLSTNYVSYLPLSY 207
Cdd:MTH00209 464 LMYMVLKKNF----FLIKGYKVNYFLSQMWFLPDLSSQPVNKFTMKL 506
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 1-206 3.93e-40

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 143.83  E-value: 3.93e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886738   1 LFMCAGSMIHNLNDCQDIRFMGSIINFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILELVSLSWLNFLIFFFYFFSTGL 80
Cdd:MTH00151 305 LFLCAGSIIHSSSGTQDIRLLGSLFLSLPLTSGCLNISSLSLCGAPFLSGFYSKDLILESSLMSPTSLLMVLLMFVGVGL 384

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886738  81 TASYSFRLFYYSISGDNNYYSIYLFDDKGYYISFSMISLLLVAVFGGSFLSWLIFPVPYVVVLPWYLKFMTLFVIILGSY 160
Cdd:MTH00151 385 TALYSARLSFCLVWGSMKSSSLSSKSDEDFYVSLPMLLLSLGALIGGKLLQSLFEGFSEEFFLPSYLKLLIGFVILLGLF 464

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 142886738 161 FGYIISDLGYSSNLFSLSflsfISFIGSMWFMPFLSTNYVSYLPLS 206
Cdd:MTH00151 465 LSFGFWDSGFSSSKMVKL----SFFFSSMWFLSPLSSQPLKSLSLK 506
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 1-205 3.64e-36

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 132.97  E-value: 3.64e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886738   1 LFMCAGSMIHNLNDCQDIRFMGSIINFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILELVSLSWLNFLIFFFYFFSTGL 80
Cdd:MTH00207 308 LFVCAGSLIHSHHHSQDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESSLFYPHNSLMILMIFLATAL 387

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886738  81 TASYSFRLFYYSISGDNNYYSIYLFDDKGYYISFSMISLLLVAVFGGSFLSWLIFPVPYVVVLPWYLKFMTLFVIILGSY 160
Cdd:MTH00207 388 TAAYSTRFTLAVLWSPNSSSPYHHLEDEDKSLTTPMLLLTLGAITSGSALNWWLPTPQEEPILPLQYKLLPLLVVTLGAL 467

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 142886738 161 FGYIISDLGYSSNLFSLSFLSFISFIGSMWFMPFLSTNYVSYLPL 205
Cdd:MTH00207 468 LAWLFTTPNITKTPLLINNPLSHFASCLMWFLVPLSSQFIMSTPM 512
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 1-208 5.31e-32

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 121.60  E-value: 5.31e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886738   1 LFMCAGSMIHNLNDCQDIRFMGSIINFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILELVSLSWLNFLIFFFYFFSTGL 80
Cdd:MTH00211 333 LFMCSGSIIHGLNNEQDIRKMGGLSKNLPFTSSCLFLGSLALMGFPFLSGFFSKDLILESMNGSYLNAWALLLTLLATSL 412

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886738  81 TASYSFRLFYYSISGDNNYYSIYLFDDKGYYISFSMISLLLVAVFGGSFLSWLIFPVPY-VVVLPWYLKFMTLFVIILGS 159
Cdd:MTH00211 413 TAAYSFRLIFLSLGGYPRFLSLSPINENYKLLKNPLKRLALGSILAGFIITSNLPPEKPeILSLPFLLKLMPLLVTIVGL 492

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 142886738 160 YFGyiisdLGYSSNLFSLSFLSFISFIGSMWFMPFLSTNYVSYLPLSYG 208
Cdd:MTH00211 493 LLG-----LELVNLTHKQLKTSTLSFSNMLGYYPPIIHRLLPKLSLKWG 536
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 1-158 8.96e-32

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 121.11  E-value: 8.96e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886738   1 LFMCAGSMIHNLNDCQDIRFMGSIINFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILELVSLSWLNFLIFFFYFFSTGL 80
Cdd:MTH00108 339 LFMCSGSIIHNLNDEQDIRKMGGLFKTLPFTSTALIIGSLALTGMPFLTGFYSKDLIIEAANTSYTNAWALLITLIATSL 418

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 142886738  81 TASYSFRLFYYSISGDNNYYSIYLFDDKGYYISFSMISLLLVAVFGGSFLSWLIFPVPYVVV-LPWYLKFMTLFVIILG 158
Cdd:MTH00108 419 TAAYSTRIIFFALLGQPRFPPLITINENNPLLINPIKRLLLGSIFAGFLISNNIPPTTIPQMtMPLYLKLTALAVTILG 497
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 1-185 2.22e-31

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 120.08  E-value: 2.22e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886738   1 LFMCAGSMIHNLNDCQDIRFMGSIINFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILELVSLSWLNFLIFFFYFFSTGL 80
Cdd:MTH00208 365 LFLCSGSIIHSLNNEQDLRKMGGLSFLLPVTSSCIILGSLALMGTPFLAGFYSKDLILEAGLASISNLLSIILALIATLL 444

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886738  81 TASYSFRLFYYSISGDNNYYSIYLFDDKGYYISFSMISLLLVAVFGGSFLSWLIFPVPyVVVLPWYLKFMTLFVIILGSY 160
Cdd:MTH00208 445 TAVYSFRIIFFCFLNNPSFSPLSPISEENPNLTNPLLRLAIGTIISGWFFSNFVFNLP-PLTLPLILKSLPLIVTIIGAA 523

                        170       180
                 ....*....|....*....|....*
gi 142886738 161 FGYIISdLGYSSNLFSLSFLSFISF 185
Cdd:MTH00208 524 FSFSFL-LSLSSNPINSNFFSFLSN 547
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 1-162 5.72e-31

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 118.73  E-value: 5.72e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886738   1 LFMCAGSMIHNLNDCQDIRFMGSIINFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILELVSLSWLNFLIFFFYFFSTGL 80
Cdd:MTH00004 338 LFLCSGSIIHNLNNEQDIRKMGGLQKTLPITSSCLTIGNLALMGTPFLSGFYSKDTIIETLNTSYLNAWALLLTLLATSF 417

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886738  81 TASYSFRLFYYSISGDNNYYSIYLFDDKGYYISFSMISLLLVAVFGGSFLSWLIFPV-PYVVVLPWYLKFMTLFVIILGS 159
Cdd:MTH00004 418 TAAYSLRMILLVQTGFPRTPPTTPINENTPTIINPITRLALGSILAGLLISSTILPTkTPPMTMPTTTKLAALIVTILGI 497


                 ...
gi 142886738 160 YFG 162
Cdd:MTH00004 498 LLA 500
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 1-158 5.28e-29

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 113.08  E-value: 5.28e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886738   1 LFMCAGSMIHNLNDCQDIRFMGSIINFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILELVSLSWLNFLIFFFYFFSTGL 80
Cdd:MTH00066 336 LFLCSGSIIHSLNDEQDIRKMGGLQKALPITTSCLTIGSLALTGTPFLAGFFSKDAIIEAMNTSNLNSWALILTLIATSF 415

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 142886738  81 TASYSFRLFYYSISGDNNYYSIYLFDDKGYYISFSMISLLLVAVFGGSFLSWLIFPV-PYVVVLPWYLKFMTLFVIILG 158
Cdd:MTH00066 416 TAVYSFRIIYFSSMKFPRSLPLSPINENNPLIINPIKRLAWGSIIAGLLIIFNILPMkPQILTMPTFMKLAALLVTLLG 494
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 1-91 9.63e-27

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 106.84  E-value: 9.63e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886738   1 LFMCAGSMIHNLNDCQDIRFMGSIINFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILELVSLSWLNFLIFFFYFFSTGL 80
Cdd:MTH00137 344 LFLCSGSIIHSLNDEQDIRKMGGLHHLTPFTSSCLTIGSLALTGTPFLAGFFSKDAIIEALNTSHLNAWALTLTLIATSF 423

                         90
                 ....*....|.
gi 142886738  81 TASYSFRLFYY 91
Cdd:MTH00137 424 TAVYSLRVVFF 434
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 84-209 3.95e-26

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 99.16  E-value: 3.95e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886738   84 YSFRLFYYSISGDNNYYSIYLFDDKGYYISFSMISLLLVAVFGGSFLSWLIFPVPYVVVLPWYLKFMTLFVIILGSYFGY 163
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 142886738  164 IISDLGYSSNLFSLSFlSFISFIGSMWFMPFLSTNYVSYLPLSYGF 209
Cdd:pfam06455  81 ELSNLSNKQLKKSLNF-NLHSFSGSMWFFPNLSHRLIPKLSLKLGQ 125
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 1-190 1.58e-20

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 88.98  E-value: 1.58e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886738   1 LFMCAGSMIHNLNDCQDIRFMGSIINFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILELVSLSWLNFLIFFFYFFSTGL 80
Cdd:MTH00020 339 LFLSAGSVIHALSDEQDMRKMGGLISFLPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSALL 418

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886738  81 TASYSFRLFYYS-ISGDNNYYSIYLFDDKG-YYISFSMISLLLVAVFGGSFLSWLI--FPVPYVVVLPWYLKFMTLFVII 156
Cdd:MTH00020 419 TAFYSIRLIYLTfLSNTNLKKAVFFHLHEGdWNLLLPLGILALGSIFVGYLAKEMIwsFQITLPPIVPLSIKLLPVFLSL 498

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 142886738 157 LGSYFGYIIsdLGYSSNLFSLSFLSF----ISFIGSMW 190
Cdd:MTH00020 499 GGIGLVIIL--YFYSSKTFRVPFSFIgrnsYTFLGSAW 534
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-165 1.07e-19

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 86.36  E-value: 1.07e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886738   1 LFMCAGSMIHNLNDcQDIRFMGSIINFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILE-LVSLSWLNFLIFFFYFFSTG 79
Cdd:COG1009  340 LFLGAGSVIHATGT-RDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAF 418

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886738  80 LTASYSFRLFYYSISGDNNYYSIYLFDDKGYYISFSMISLLLVAVFGGSFLSWL---------IFPVPYVVVLPWYLKFM 150
Cdd:COG1009  419 LTAFYSFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNAL 498

                        170
                 ....*....|....*
gi 142886738 151 TLFVIILGSYFGYII 165
Cdd:COG1009  499 PLLLSLLGIALGYLL 513
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 1-190 1.32e-19

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 86.22  E-value: 1.32e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886738   1 LFMCAGSMIHNLNDCQDIRFMGSIINFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILELVSLSWLNFLIFFFYFFSTGL 80
Cdd:MTH00210 340 LFLSAGSVIHAVSDEQDMRKMGGLIKSIPFTYVMILIGSLSLMGFPYLTGFYSKDLILELTYDKYYIAFAYWLGSFSALL 419

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886738  81 TASYSFRLFYYS-ISGDNNYYSIYL-FDDKGYYISFSMISLLLVAVFGGSFLSWLIFPVPYVVVLPWYLKFMTLFVIILG 158
Cdd:MTH00210 420 TAFYSIRLIYLTfITNTNSKKEVFIgVHESSWNITFPLLLLAFGSIFVGYLGKEVVLSNVIPPIVPNSIKMIPLLFSLLG 499

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 142886738 159 SYFGYIISDLGY------SSNLFSLSFLSFISFIGSMW 190
Cdd:MTH00210 500 ALLAFVIYNSMVflikisRRGVSIRLYHVIYTFLNSAW 537
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 1-89 1.69e-19

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 85.98  E-value: 1.69e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886738   1 LFMCAGSMIHNLNDCQDIRFMGSIINFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILElVSLSWLNFLIFFFYFFSTGL 80
Cdd:PRK06590 346 LFLGAGSVIHAMHHEQDIRKMGGLRKKMPVTYATFLIGTLALIGIPPFAGFFSKDEILE-AAFANGHINLFVAGLVGAFL 424


                 ....*....
gi 142886738  81 TASYSFRLF 89
Cdd:PRK06590 425 TAFYSFRLI 433
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
1-96 4.20e-15

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 73.13  E-value: 4.20e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886738   1 LFMCAGSMIHNLND--------CQDIRFMGSIINFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILELVSLSwlNFLIFF 72
Cdd:PRK07376 356 LFLGSGSVIHGMEEvvghdpvlAQDMRLMGGLRKYMPITAITFLIGCLAISGIPPFAGFWSKDEILGAAFEA--NPALWF 433

                         90       100
                 ....*....|....*....|....
gi 142886738  73 FYFFSTGLTASYSFRLFYYSISGD 96
Cdd:PRK07376 434 VGFLTAGMTAFYMFRMYFLTFEGE 457
ndhF CHL00025
NADH dehydrogenase subunit 5
 1-121 1.66e-11

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 62.60  E-value: 1.66e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886738   1 LFMCAGSMIHNL--------NDCQDIRFMGSIINFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILelvSLSWLNFLIFF 72
Cdd:CHL00025 356 LFLGSGSVIHSMepivgyspDKSQNMVLMGGLRKYMPITKTTFLLGTLSLCGIPPLACFWSKDEIL---NDSWLYSPIFA 432

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 142886738  73 FYFFST-GLTASYSFR-------------LFYYSISGDNNYYSIYLFDDKGYYISFSMISLLL 121
Cdd:CHL00025 433 IIAWSTaGLTAFYMFRiylltfeghlrvhFQNYSGKKNSSFYSISLWGKEESKKINKLLLLLT 495
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 1-60 3.80e-10

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 58.82  E-value: 3.80e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 142886738   1 LFMCAGSMIHNLN-DCQDIRFMGSIINFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILEL 60
Cdd:MTH00032 355 LFLSAGSVIHSTTvDEQDMRKMGGLIHSIPFTYTMMLIGSFSIMGLPYLTGFYSKDLILEL 415
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-59 4.97e-09

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 54.63  E-value: 4.97e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 142886738    1 LFMCAGSMIHNLNDCQDIRFMGSIINFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILE 59
Cdd:pfam00361 215 LFLCAGSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 1-91 1.65e-07

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 50.53  E-value: 1.65e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886738   1 LFMCAGSMIHNLNDcQDIRFMGSIINFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILElVSLSWLNFLIFFFYFFSTGL 80
Cdd:COG0651  340 LFLAAGAIERATGT-RDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQ-AALEAGAWLLAAVLLLSSLL 417

                         90
                 ....*....|.
gi 142886738  81 TASYSFRLFYY 91
Cdd:COG0651  418 TLAYFVRIFGR 428
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
 1-65 1.84e-06

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 47.60  E-value: 1.84e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 142886738   1 LFMCAGSMIHNlNDCQDIRFMGSIINFMPLTSICFNVSSLSLCGMPFLAGFYSkdlILELVSLSW 65
Cdd:PRK07390 349 LFMSVGSIILT-TITQDLTELGGLWSRMPATTLAFLVGSAGLVALLPLGGFWA---LLRLADGLW 409
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 1-59 1.89e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 41.64  E-value: 1.89e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 142886738   1 LFMCAGSMIHNLNDcQDIRFMGSIINFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILE 59
Cdd:PRK08667 349 LFLTAGSVVHATGT-RNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYE 406
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-59 5.02e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 40.34  E-value: 5.02e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 142886738   1 LFMCAGSMIHNLNDcQDIRFMGSIINFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILE 59
Cdd:PRK12667 363 LFLASGVFIHAAGT-RDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFN 420
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
1-58 9.34e-04

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 39.49  E-value: 9.34e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886738   1 LFMCAGSMIHNL--NDCQDirfMGSIINFMPLTSICFNVSSLSLCGMPFLAGFYSKDLIL 58
Cdd:PRK12668 308 LFMSAGAVLYRTgtEKLTE---LGGLYRSMPLTALFCLVGALSISAFPLFSGFVSKSMII 364
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 1-58 1.81e-03

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 38.72  E-value: 1.81e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 142886738   1 LFMCAGSMIHNLNDcQDIRFMGSIINFMPLTSICFNVSSLSLCGMPFLAGFYSKDLIL 58
Cdd:PRK06521 355 LFLGAGAVLHATGT-RDMEKLGGLIRRMPWTAWAFLIGCLAISALPPLNGFVSEWLLL 411
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-91 1.98e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 38.32  E-value: 1.98e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886738   1 LFMCAGSMIHNLNDcQDIRFMGSIINFMPLTSICFNVSSLSLCGMPFLAGFYSK-DLILELVSLSWLnfLIFFFYFFSTG 79
Cdd:PRK08375 339 LFLAAGAIEVTYGT-RRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKwYLVVGAVEAGQW--LVLAVLLASSL 415

                         90
                 ....*....|..
gi 142886738  80 LTASYSFRLFYY 91
Cdd:PRK08375 416 LALLYFLRIWYR 427
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-63 2.30e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 38.15  E-value: 2.30e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 142886738   1 LFMCAGSMIHNLNdCQDIRFMGSIINFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILELVSL 63
Cdd:PRK08376 367 LFLTAGAVIYETG-TRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESSAL 428
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 1-58 4.98e-03

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 37.37  E-value: 4.98e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 142886738   1 LFMCAGSMIHNLNDcQDIRFMGSIINFMPLTSICFNVSSLSLCGMPFLAGFYSKDLIL 58
Cdd:COG1008  343 LFLLVGVLYDRTHT-RDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVL 399
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 1-59 6.43e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 37.21  E-value: 6.43e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 142886738   1 LFMCAGSMIHNLNdCQDIRFMGSIINFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILE 59
Cdd:PRK12647 327 LFMVAGIIDHETG-TRDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYE 384
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
 1-87 7.58e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 36.71  E-value: 7.58e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886738   1 LFMCAGSMIHNlNDCQDIRFMGSIINFMPLTSICFNVSSLSLCGMPFLAGFYSKDL----ILELVSLSWLNFLIFFFYFF 76
Cdd:PRK12648 339 LFMAAGIIDHE-TGTRDMRRLSGLRRLMPITATLAMVAAAAMAGVPLLNGFLSKEMffaeTLDTHLLGSLDWLLPVAATL 417

                         90
                 ....*....|.
gi 142886738  77 STGLTASYSFR 87
Cdd:PRK12648 418 AGAFSVAYSLR 428
PRK12646 PRK12646
DUF4040 family protein;
1-59 7.93e-03

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 36.66  E-value: 7.93e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 142886738   1 LFMCAGSMIHNlNDCQDIRFMGSIINFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILE 59
Cdd:PRK12646 356 LFMGVGIIDHE-AGTRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKEMFLD 413
PRK12650 PRK12650
DUF4040 family protein;
1-59 8.45e-03

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 36.56  E-value: 8.45e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 142886738   1 LFMCAGSMIHNLNDcQDIRFMGSIINFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILE 59
Cdd:PRK12650 340 LFMLIGVVDHQAGT-RDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSKEGMLT 397
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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