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Conserved domains on  [gi|142886718|gb|ABO92866|]
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NADH dehydrogenase subunit 5, partial (mitochondrion) [Trachyrhachys kiowa]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND5 super family cl33362
NADH dehydrogenase subunit 5; Provisional
 1-205 3.06e-68

NADH dehydrogenase subunit 5; Provisional


The actual alignment was detected with superfamily member MTH00165:

Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 218.09  E-value: 3.06e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886718   1 MIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWLNSLIFFLYFISTGLTASYSFR 80
Cdd:MTH00165 315 IIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYSFR 394

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886718  81 LFYYSMMGDNNFYSSCSFDDKSYYISFGMIGLLFIAVFGGSFLSWLIFPVPYIIVLPWYLKFLTLFVVVMGSYLGYLASD 160
Cdd:MTH00165 395 LIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYELSL 474

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 142886718 161 FNYYYGLF*LNFLSFG*FVGSMWFMPFISTNFISYIPLKYGYSSS 205
Cdd:MTH00165 475 MSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSL 519
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-205 3.06e-68

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 218.09  E-value: 3.06e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886718   1 MIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWLNSLIFFLYFISTGLTASYSFR 80
Cdd:MTH00165 315 IIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYSFR 394

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886718  81 LFYYSMMGDNNFYSSCSFDDKSYYISFGMIGLLFIAVFGGSFLSWLIFPVPYIIVLPWYLKFLTLFVVVMGSYLGYLASD 160
Cdd:MTH00165 395 LIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYELSL 474

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 142886718 161 FNYYYGLF*LNFLSFG*FVGSMWFMPFISTNFISYIPLKYGYSSS 205
Cdd:MTH00165 475 MSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSL 519
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 77-205 2.23e-27

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 102.24  E-value: 2.23e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886718   77 YSFRLFYYSMMGDNNFYSSCSFDDKSYYISFGMIGLLFIAVFGGSFLSWLIFPVPYIIVLPWYLKFLTLFVVVMGSYLGY 156
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 142886718  157 LASDFNYYYGLF*LNFlSFG*FVGSMWFMPFISTNFISYIPLKYGYSSS 205
Cdd:pfam06455  81 ELSNLSNKQLKKSLNF-NLHSFSGSMWFFPNLSHRLIPKLSLKLGQKLA 128
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 8-157 1.38e-15

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 74.42  E-value: 1.38e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886718   8 SQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE-IVCLSWLNSLIFFLYFISTGLTASYSFRLFYYSM 86
Cdd:COG1009  353 TRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAFLTAFYSFRLFFLVF 432

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886718  87 MGDNNFYSSCSFDDKSYYISFGMIGLLFIAVFGGSFLSWL---------IFPVPYIIVLPWYLKFLTLFVVVMGSYLGYL 157
Cdd:COG1009  433 FGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNALPLLLSLLGIALGYL 512
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-205 3.06e-68

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 218.09  E-value: 3.06e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886718   1 MIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWLNSLIFFLYFISTGLTASYSFR 80
Cdd:MTH00165 315 IIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYSFR 394

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886718  81 LFYYSMMGDNNFYSSCSFDDKSYYISFGMIGLLFIAVFGGSFLSWLIFPVPYIIVLPWYLKFLTLFVVVMGSYLGYLASD 160
Cdd:MTH00165 395 LIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYELSL 474

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 142886718 161 FNYYYGLF*LNFLSFG*FVGSMWFMPFISTNFISYIPLKYGYSSS 205
Cdd:MTH00165 475 MSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSL 519
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 1-200 3.87e-40

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 143.63  E-value: 3.87e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886718   1 MIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWLNSLIFFLYFISTGLTASYSFR 80
Cdd:MTH00209 311 IIHSHGHSQDIRMVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTSLTAAYSMR 390

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886718  81 LFYYSMMGDNNFYSSCSFDDKSYYISFGMIGLLFIAVFGGSFLSWLIFPVPYIIVLPWYLKFLTLFVVVMGSYLGYlasd 160
Cdd:MTH00209 391 LSYFSLWGPNSSKSLNSSFDQNKLNLKPMLVLTLGSITGGSVMSWVMVPSVNSVVLPWFLKLLPIMLILFGVLLMY---- 466

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 142886718 161 FNYYYGLF*LNFLSFG*FVGSMWFMPFISTNFISYIPLKY 200
Cdd:MTH00209 467 MVLKKNFFLIKGYKVNYFLSQMWFLPDLSSQPVNKFTMKL 506
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 1-204 1.02e-36

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 134.20  E-value: 1.02e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886718   1 MIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWLNSLIFFLYFISTGLTASYSFR 80
Cdd:MTH00151 312 IIHSSSGTQDIRLLGSLFLSLPLTSGCLNISSLSLCGAPFLSGFYSKDLILESSLMSPTSLLMVLLMFVGVGLTALYSAR 391

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886718  81 LFYYSMMGDNNFYSSCSFDDKSYYISFGMIGLLFIAVFGGSFLSWLIFPVPYIIVLPWYLKFLTLFVVVMGSYLGYLASD 160
Cdd:MTH00151 392 LSFCLVWGSMKSSSLSSKSDEDFYVSLPMLLLSLGALIGGKLLQSLFEGFSEEFFLPSYLKLLIGFVILLGLFLSFGFWD 471

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 142886718 161 FNYYYGlf*lNFLSFG*FVGSMWFMPFISTNFISYIPLKYGYSS 204
Cdd:MTH00151 472 SGFSSS----KMVKLSFFFSSMWFLSPLSSQPLKSLSLKLSNSS 511
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 1-201 1.31e-35

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 131.43  E-value: 1.31e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886718   1 MIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWLNSLIFFLYFISTGLTASYSFR 80
Cdd:MTH00207 315 LIHSHHHSQDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESSLFYPHNSLMILMIFLATALTAAYSTR 394

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886718  81 LFYYSMMGDNNFYSSCSFDDKSYYISFGMIGLLFIAVFGGSFLSWLIFPVPYIIVLPWYLKFLTLFVVVMGSYLGYLASD 160
Cdd:MTH00207 395 FTLAVLWSPNSSSPYHHLEDEDKSLTTPMLLLTLGAITSGSALNWWLPTPQEEPILPLQYKLLPLLVVTLGALLAWLFTT 474

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 142886718 161 FNYYYGLF*LNFLSFG*FVGSMWFMPFISTNFISYIPLKYG 201
Cdd:MTH00207 475 PNITKTPLLINNPLSHFASCLMWFLVPLSSQFIMSTPMNLS 515
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 1-201 2.53e-29

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 113.89  E-value: 2.53e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886718   1 MIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWLNSLIFFLYFISTGLTASYSFR 80
Cdd:MTH00211 340 IIHGLNNEQDIRKMGGLSKNLPFTSSCLFLGSLALMGFPFLSGFFSKDLILESMNGSYLNAWALLLTLLATSLTAAYSFR 419

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886718  81 LFYYSMMGDNNFYSSCSFDDKSYYISFGMIGLLFIAVFGGSFLSWLIFPVPYIIV-LPWYLKFLTLFVVVMGSYLG-YLA 158
Cdd:MTH00211 420 LIFLSLGGYPRFLSLSPINENYKLLKNPLKRLALGSILAGFIITSNLPPEKPEILsLPFLLKLMPLLVTIVGLLLGlELV 499

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 142886718 159 SDFNYYYGLF*LNFLSFg*fvgsMWFMPFISTNFISYIPLKYG 201
Cdd:MTH00211 500 NLTHKQLKTSTLSFSNM------LGYYPPIIHRLLPKLSLKWG 536
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 1-196 4.91e-29

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 113.14  E-value: 4.91e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886718   1 MIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWLNSLIFFLYFISTGLTASYSFR 80
Cdd:MTH00208 372 IIHSLNNEQDLRKMGGLSFLLPVTSSCIILGSLALMGTPFLAGFYSKDLILEAGLASISNLLSIILALIATLLTAVYSFR 451

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886718  81 LFYYSMMGDNNFYSSCSFDDKSYYISFGMIGLLFIAVFGGSFLSWLIFPVPyIIVLPWYLKFLTLFVVVMGSYLGYLasd 160
Cdd:MTH00208 452 IIFFCFLNNPSFSPLSPISEENPNLTNPLLRLAIGTIISGWFFSNFVFNLP-PLTLPLILKSLPLIVTIIGAAFSFS--- 527

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 142886718 161 FNYYYGLF*LNFLSFG*FVGSMWFMPFISTNFISYI 196
Cdd:MTH00208 528 FLLSLSSNPINSNFFSFLSNQWFFVNISHSIIISFS 563
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 77-205 2.23e-27

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 102.24  E-value: 2.23e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886718   77 YSFRLFYYSMMGDNNFYSSCSFDDKSYYISFGMIGLLFIAVFGGSFLSWLIFPVPYIIVLPWYLKFLTLFVVVMGSYLGY 156
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 142886718  157 LASDFNYYYGLF*LNFlSFG*FVGSMWFMPFISTNFISYIPLKYGYSSS 205
Cdd:pfam06455  81 ELSNLSNKQLKKSLNF-NLHSFSGSMWFFPNLSHRLIPKLSLKLGQKLA 128
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 2-155 7.17e-27

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 106.79  E-value: 7.17e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886718   2 IHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWLNSLIFFLYFISTGLTASYSFRL 81
Cdd:MTH00004 346 IHNLNNEQDIRKMGGLQKTLPITSSCLTIGNLALMGTPFLSGFYSKDTIIETLNTSYLNAWALLLTLLATSFTAAYSLRM 425

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 142886718  82 FYYSMMGDNNFYSSCSFDDKSYYISFGMIGLLFIAVFGGSFLSWLIFPV-PYIIVLPWYLKFLTLFVVVMGSYLG 155
Cdd:MTH00004 426 ILLVQTGFPRTPPTTPINENTPTIINPITRLALGSILAGLLISSTILPTkTPPMTMPTTTKLAALIVTILGILLA 500
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 2-151 1.57e-26

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 106.09  E-value: 1.57e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886718   2 IHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWLNSLIFFLYFISTGLTASYSFRL 81
Cdd:MTH00108 347 IHNLNDEQDIRKMGGLFKTLPFTSTALIIGSLALTGMPFLTGFYSKDLIIEAANTSYTNAWALLITLIATSLTAAYSTRI 426

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 142886718  82 FYYSMMGDNNFYSSCSFDDKSYYISFGMIGLLFIAVFGGSFLSWLIFPVPYI-IVLPWYLKFLTLFVVVMG 151
Cdd:MTH00108 427 IFFALLGQPRFPPLITINENNPLLINPIKRLLLGSIFAGFLISNNIPPTTIPqMTMPLYLKLTALAVTILG 497
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 2-151 6.82e-26

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 104.22  E-value: 6.82e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886718   2 IHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWLNSLIFFLYFISTGLTASYSFRL 81
Cdd:MTH00066 344 IHSLNDEQDIRKMGGLQKALPITTSCLTIGSLALTGTPFLAGFFSKDAIIEAMNTSNLNSWALILTLIATSFTAVYSFRI 423

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 142886718  82 FYYSMMGDNNFYSSCSFDDKSYYISFGMIGLLFIAVFGGSFLSWLIFPV-PYIIVLPWYLKFLTLFVVVMG 151
Cdd:MTH00066 424 IYFSSMKFPRSLPLSPINENNPLIINPIKRLAWGSIIAGLLIIFNILPMkPQILTMPTFMKLAALLVTLLG 494
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 2-88 4.17e-24

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 99.14  E-value: 4.17e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886718   2 IHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWLNSLIFFLYFISTGLTASYSFRL 81
Cdd:MTH00137 352 IHSLNDEQDIRKMGGLHHLTPFTSSCLTIGSLALTGTPFLAGFFSKDAIIEALNTSHLNAWALTLTLIATSFTAVYSLRV 431


                 ....*..
gi 142886718  82 FYYSMMG 88
Cdd:MTH00137 432 VFFVSMG 438
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 2-203 1.98e-19

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 85.44  E-value: 1.98e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886718   2 IHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWLNSLIFFLYFISTGLTASYSFRL 81
Cdd:MTH00210 348 IHAVSDEQDMRKMGGLIKSIPFTYVMILIGSLSLMGFPYLTGFYSKDLILELTYDKYYIAFAYWLGSFSALLTAFYSIRL 427

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886718  82 FYYSMMGDNNFYSSCSF--DDKSYYISFGMIGLLFIAVFGGSFLSWLIFPVPYIIVLPWYLKFLTLFVVVMGSYLGYLAS 159
Cdd:MTH00210 428 IYLTFITNTNSKKEVFIgvHESSWNITFPLLLLAFGSIFVGYLGKEVVLSNVIPPIVPNSIKMIPLLFSLLGALLAFVIY 507

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 142886718 160 DFNYYY------GLF*LNFLSFG*FVGSMWFMPFISTNFISYIPLKYGYS 203
Cdd:MTH00210 508 NSMVFLikisrrGVSIRLYHVIYTFLNSAWQFNYVINHFIVKNIWKFGHL 557
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 2-157 1.13e-16

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 77.51  E-value: 1.13e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886718   2 IHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEiVCLSWLNSLIFFLYFISTGLTASYSFRL 81
Cdd:PRK06590 354 IHAMHHEQDIRKMGGLRKKMPVTYATFLIGTLALIGIPPFAGFFSKDEILE-AAFANGHINLFVAGLVGAFLTAFYSFRL 432

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886718  82 FYYSMMGDNnfysscsfDDKSY-------YISFGMIGLLFIAVFGG-----SFLSWLIFPVPYIIV-----LPWYLKFLT 144
Cdd:PRK06590 433 IFLVFHGKE--------KEKIHhphespaVMTLPLIVLAVLSVFAGalivpPFLGVLPLTTELAHGeaehhLPVWVALLP 504

                        170
                 ....*....|...
gi 142886718 145 LFVVVMGSYLGYL 157
Cdd:PRK06590 505 LVVALAGIALAWL 517
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 1-202 2.80e-16

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 76.27  E-value: 2.80e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886718   1 MIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWLNSLIFFLYFISTGLTASYSFR 80
Cdd:MTH00020 346 VIHALSDEQDMRKMGGLISFLPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSALLTAFYSIR 425

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886718  81 LFYYSMMGDNNFYSSCSFD--DKSYYISFGMIGLLFIAVFGGSFLSWLI-------FPVPYIIV--LPWYLKFL-TLFVV 148
Cdd:MTH00020 426 LIYLTFLSNTNLKKAVFFHlhEGDWNLLLPLGILALGSIFVGYLAKEMIwsfqitlPPIVPLSIklLPVFLSLGgIGLVI 505

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 142886718 149 VMGSYLGYLASDFNYYYGLF*LNFLsfg*fvGSMWFMPFISTNFISYIPLKYGY 202
Cdd:MTH00020 506 ILYFYSSKTFRVPFSFIGRNSYTFL------GSAWQFNYILNYFLIKKIWKGGH 553
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 8-157 1.38e-15

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 74.42  E-value: 1.38e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886718   8 SQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE-IVCLSWLNSLIFFLYFISTGLTASYSFRLFYYSM 86
Cdd:COG1009  353 TRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAFLTAFYSFRLFFLVF 432

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886718  87 MGDNNFYSSCSFDDKSYYISFGMIGLLFIAVFGGSFLSWL---------IFPVPYIIVLPWYLKFLTLFVVVMGSYLGYL 157
Cdd:COG1009  433 FGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNALPLLLSLLGIALGYL 512
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
3-89 1.26e-13

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 68.51  E-value: 1.26e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886718   3 HNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSwlNSLIFFLYFISTGLTASYSFRLF 82
Cdd:PRK07376 373 HDPVLAQDMRLMGGLRKYMPITAITFLIGCLAISGIPPFAGFWSKDEILGAAFEA--NPALWFVGFLTAGMTAFYMFRMY 450


                 ....*..
gi 142886718  83 YYSMMGD 89
Cdd:PRK07376 451 FLTFEGE 457
ndhF CHL00025
NADH dehydrogenase subunit 5
 8-107 1.17e-10

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 59.91  E-value: 1.17e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886718   8 SQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDlilEIVCLSWLNSLIF-FLYFISTGLTASYSFRLFYYSM 86
Cdd:CHL00025 378 SQNMVLMGGLRKYMPITKTTFLLGTLSLCGIPPLACFWSKD---EILNDSWLYSPIFaIIAWSTAGLTAFYMFRIYLLTF 454

                         90       100
                 ....*....|....*....|....
gi 142886718  87 MGDNNFYSSCSFDDKS---YYISF 107
Cdd:CHL00025 455 EGHLRVHFQNYSGKKNssfYSISL 478
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-72 1.52e-07

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 50.39  E-value: 1.52e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 142886718    1 MIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVclsWLNSLIFFLYFISTG 72
Cdd:pfam00361 222 VIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAA---VAASWIFLVLAGVVG 290
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 7-53 9.27e-07

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 48.42  E-value: 9.27e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 142886718   7 DSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEI 53
Cdd:MTH00032 369 DEQDMRKMGGLIHSIPFTYTMMLIGSFSIMGLPYLTGFYSKDLILEL 415
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 8-84 1.96e-05

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 44.37  E-value: 1.96e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 142886718   8 SQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVcLSWLNSLIFFLYFISTGLTASYSFRLFYY 84
Cdd:COG0651  353 TRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAA-LEAGAWLLAAVLLLSSLLTLAYFVRIFGR 428
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 21-88 1.30e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 39.09  E-value: 1.30e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 142886718  21 MPLTSVCFNVSSLSLCGMPFLAGFYSK-DLILEIVCLSWLNSLIFFLyfISTGLTASYSFRLFYYSMMG 88
Cdd:PRK08375 365 MPLTAAAFAVASLSLIGVPPTSGFVSKwYLVVGAVEAGQWLVLAVLL--ASSLLALLYFLRIWYRAFFG 431
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 7-83 1.86e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 38.41  E-value: 1.86e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 142886718   7 DSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWLNSLIFFLyFISTGLTASYSFRLFY 83
Cdd:PRK12667 375 GTRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVL-LIASAISLVGYFRAWY 450
PRK12650 PRK12650
DUF4040 family protein;
8-81 2.26e-03

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 38.49  E-value: 2.26e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 142886718   8 SQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWLNSLIFFLYFISTGLTA----SYSFRL 81
Cdd:PRK12650 353 TRDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSKEGMLTAFLEAPGGNAGVVLLLVGAALGAvftfAYSARL 430
ND5 MTH00095
NADH dehydrogenase subunit 5; Provisional
 1-150 3.95e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177158 [Multi-domain]  Cd Length: 527  Bit Score: 37.59  E-value: 3.95e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886718   1 MIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWLNSLIFFLYFISTGLTASYSFR 80
Cdd:MTH00095 299 LIHSNFGQQDGRNYSNNGNLPMFIQLQLLVTLFCLCGLMFTSGMVSKELILELFFFNNYMIFFSLMFFFSVFLTFGYSYR 378

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 142886718  81 LFYysmmgdnNFYSSCSFDDKSYYISFGMIGLLFIAVFGG-SFLSWLIFPVPYIIVLPWYLKFLTLFVVVM 150
Cdd:MTH00095 379 LWK-------SFFLSFSKVVNVYSSSVLMNFLSLMLVFFSvFFLWWLNFNLLNLPSLFLYLDFYVPLFYLF 442
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 8-88 4.64e-03

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 37.37  E-value: 4.64e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886718   8 SQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSwlNSLIFFLYFISTGLTASYSFRLFYYSMM 87
Cdd:COG1008  356 TRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVLLGAFQV--NPWLAILAALGLILTAAYLLWMYQRVFF 433


                 .
gi 142886718  88 G 88
Cdd:COG1008  434 G 434
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
 8-75 4.75e-03

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 37.20  E-value: 4.75e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 142886718   8 SQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSkdlILEIVCLSWLNSLIFFLYFIST-GLTA 75
Cdd:PRK07390 362 TQDLTELGGLWSRMPATTLAFLVGSAGLVALLPLGGFWA---LLRLADGLWAVSPWLVGVLLLVnALTA 427
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
 10-80 4.81e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 37.48  E-value: 4.81e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 142886718  10 DIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL-EIVCLSWLNSLIFFLYFIST---GLTASYSFR 80
Cdd:PRK12648 354 DMRRLSGLRRLMPITATLAMVAAAAMAGVPLLNGFLSKEMFFaETLDTHLLGSLDWLLPVAATlagAFSVAYSLR 428
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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