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Conserved domains on  [gi|142886714|gb|ABO92864|]
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NADH dehydrogenase subunit 5, partial (mitochondrion) [Sphingonotus coerulipes]

Protein Classification

NADH dehydrogenase subunit 5( domain architecture ID 11475935)

NADH dehydrogenase subunit 5 (ND5/NADH5) is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain; the immediate electron acceptor for the enzyme is believed to be ubiquinone

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-208 1.02e-70

NADH dehydrogenase subunit 5; Provisional


:

Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 225.02  E-value: 1.02e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886714   1 LFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFVSTGL 80
Cdd:MTH00165 308 LFLCAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGL 387

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886714  81 TASYSFRLFYYSMMGDNNFYPSSFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIVLPWYLKFLTMFVVILGSY 160
Cdd:MTH00165 388 TVSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGW 467

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 142886714 161 LGYLVSDFDYFYGLFSLSFLSFVSFLPSMWFMPFLSTNYISYLPLKAG 208
Cdd:MTH00165 468 LGYELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLG 515
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-208 1.02e-70

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 225.02  E-value: 1.02e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886714   1 LFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFVSTGL 80
Cdd:MTH00165 308 LFLCAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGL 387

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886714  81 TASYSFRLFYYSMMGDNNFYPSSFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIVLPWYLKFLTMFVVILGSY 160
Cdd:MTH00165 388 TVSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGW 467

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 142886714 161 LGYLVSDFDYFYGLFSLSFLSFVSFLPSMWFMPFLSTNYISYLPLKAG 208
Cdd:MTH00165 468 LGYELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLG 515
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 84-208 6.20e-26

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 98.39  E-value: 6.20e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886714   84 YSFRLFYYSMMGDNNFYPSSFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIVLPWYLKFLTMFVVILGSYLGY 163
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 142886714  164 LVSDFDYFYGLFSLSFlSFVSFLPSMWFMPFLSTNYISYLPLKAG 208
Cdd:pfam06455  81 ELSNLSNKQLKKSLNF-NLHSFSGSMWFFPNLSHRLIPKLSLKLG 124
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-165 2.18e-20

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 88.29  E-value: 2.18e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886714   1 LFMCAGSMIHNLSdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE-VVCLSWVNFLIFFLYFVSTG 79
Cdd:COG1009  340 LFLGAGSVIHATG-TRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAF 418

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886714  80 LTASYSFRLFYYSMMGDNNFYPSSFFDDKSYFISFGMIGLLFVAVFGGSFLSWL---------IFPVPYVIVLPWYLKFL 150
Cdd:COG1009  419 LTAFYSFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNAL 498

                        170
                 ....*....|....*
gi 142886714 151 TMFVVILGSYLGYLV 165
Cdd:COG1009  499 PLLLSLLGIALGYLL 513
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-208 1.02e-70

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 225.02  E-value: 1.02e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886714   1 LFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFVSTGL 80
Cdd:MTH00165 308 LFLCAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGL 387

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886714  81 TASYSFRLFYYSMMGDNNFYPSSFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIVLPWYLKFLTMFVVILGSY 160
Cdd:MTH00165 388 TVSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGW 467

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 142886714 161 LGYLVSDFDYFYGLFSLSFLSFVSFLPSMWFMPFLSTNYISYLPLKAG 208
Cdd:MTH00165 468 LGYELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLG 515
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 1-206 2.22e-45

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 157.88  E-value: 2.22e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886714   1 LFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFVSTGL 80
Cdd:MTH00209 304 LFICAGNIIHSHGHSQDIRMVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTSL 383

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886714  81 TASYSFRLFYYSMMGDNNFYPSSFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIVLPWYLKFLTMFVVILGSY 160
Cdd:MTH00209 384 TAAYSMRLSYFSLWGPNSSKSLNSSFDQNKLNLKPMLVLTLGSITGGSVMSWVMVPSVNSVVLPWFLKLLPIMLILFGVL 463

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 142886714 161 LGYLVSDfdyfYGLFSLSFLSFVSFLPSMWFMPFLSTNYISYLPLK 206
Cdd:MTH00209 464 LMYMVLK----KNFFLIKGYKVNYFLSQMWFLPDLSSQPVNKFTMK 505
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 1-208 7.32e-41

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 145.76  E-value: 7.32e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886714   1 LFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFVSTGL 80
Cdd:MTH00151 305 LFLCAGSIIHSSSGTQDIRLLGSLFLSLPLTSGCLNISSLSLCGAPFLSGFYSKDLILESSLMSPTSLLMVLLMFVGVGL 384

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886714  81 TASYSFRLFYYSMMGDNNFYPSSFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIVLPWYLKFLTMFVVILGSY 160
Cdd:MTH00151 385 TALYSARLSFCLVWGSMKSSSLSSKSDEDFYVSLPMLLLSLGALIGGKLLQSLFEGFSEEFFLPSYLKLLIGFVILLGLF 464

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 142886714 161 LGYLVSDFDYFYGLFSLSflsfVSFLPSMWFMPFLSTNYISYLPLKAG 208
Cdd:MTH00151 465 LSFGFWDSGFSSSKMVKL----SFFFSSMWFLSPLSSQPLKSLSLKLS 508
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 1-206 9.07e-39

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 139.90  E-value: 9.07e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886714   1 LFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFVSTGL 80
Cdd:MTH00207 308 LFVCAGSLIHSHHHSQDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESSLFYPHNSLMILMIFLATAL 387

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886714  81 TASYSFRLFYYSMMGDNNFYPSSFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIVLPWYLKFLTMFVVILGSY 160
Cdd:MTH00207 388 TAAYSTRFTLAVLWSPNSSSPYHHLEDEDKSLTTPMLLLTLGAITSGSALNWWLPTPQEEPILPLQYKLLPLLVVTLGAL 467

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 142886714 161 LGYLVSDFDYFYGLFSLSFLSFVSFLPSMWFMPFLSTNYISYLPLK 206
Cdd:MTH00207 468 LAWLFTTPNITKTPLLINNPLSHFASCLMWFLVPLSSQFIMSTPMN 513
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 1-208 9.83e-33

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 123.52  E-value: 9.83e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886714   1 LFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFVSTGL 80
Cdd:MTH00211 333 LFMCSGSIIHGLNNEQDIRKMGGLSKNLPFTSSCLFLGSLALMGFPFLSGFFSKDLILESMNGSYLNAWALLLTLLATSL 412

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886714  81 TASYSFRLFYYSMMGDNNFYPSSFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIV-LPWYLKFLTMFVVILGS 159
Cdd:MTH00211 413 TAAYSFRLIFLSLGGYPRFLSLSPINENYKLLKNPLKRLALGSILAGFIITSNLPPEKPEILsLPFLLKLMPLLVTIVGL 492

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 142886714 160 YLGYLVSdfdyfYGLFSLSFLSFVSFLPSMWFMPFLSTNYISYLPLKAG 208
Cdd:MTH00211 493 LLGLELV-----NLTHKQLKTSTLSFSNMLGYYPPIIHRLLPKLSLKWG 536
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 1-158 1.31e-32

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 123.04  E-value: 1.31e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886714   1 LFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFVSTGL 80
Cdd:MTH00108 339 LFMCSGSIIHNLNDEQDIRKMGGLFKTLPFTSTALIIGSLALTGMPFLTGFYSKDLIIEAANTSYTNAWALLITLIATSL 418

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886714  81 TASYSFRLFYYSMMGDNNFYPSSFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFP--VPyVIVLPWYLKFLTMFVVILG 158
Cdd:MTH00108 419 TAAYSTRIIFFALLGQPRFPPLITINENNPLLINPIKRLLLGSIFAGFLISNNIPPttIP-QMTMPLYLKLTALAVTILG 497
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 1-203 1.91e-32

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 122.77  E-value: 1.91e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886714   1 LFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFVSTGL 80
Cdd:MTH00208 365 LFLCSGSIIHSLNNEQDLRKMGGLSFLLPVTSSCIILGSLALMGTPFLAGFYSKDLILEAGLASISNLLSIILALIATLL 444

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886714  81 TASYSFRLFYYSMMGDNNFYPSSFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPyVIVLPWYLKFLTMFVVILGSY 160
Cdd:MTH00208 445 TAVYSFRIIFFCFLNNPSFSPLSPISEENPNLTNPLLRLAIGTIISGWFFSNFVFNLP-PLTLPLILKSLPLIVTIIGAA 523

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 142886714 161 LGYLvsdFDYFYGLFSLSFLSFvSFLPSMWFMPFLSTNYISYL 203
Cdd:MTH00208 524 FSFS---FLLSLSSNPINSNFF-SFLSNQWFFVNISHSIIISF 562
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 1-162 8.59e-32

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 121.04  E-value: 8.59e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886714   1 LFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFVSTGL 80
Cdd:MTH00004 338 LFLCSGSIIHNLNNEQDIRKMGGLQKTLPITSSCLTIGNLALMGTPFLSGFYSKDTIIETLNTSYLNAWALLLTLLATSF 417

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886714  81 TASYSFRLFYYSMMGDNNFYPSSFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPV-PYVIVLPWYLKFLTMFVVILGS 159
Cdd:MTH00004 418 TAAYSLRMILLVQTGFPRTPPTTPINENTPTIINPITRLALGSILAGLLISSTILPTkTPPMTMPTTTKLAALIVTILGI 497


                 ...
gi 142886714 160 YLG 162
Cdd:MTH00004 498 LLA 500
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 1-158 6.12e-31

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 118.47  E-value: 6.12e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886714   1 LFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFVSTGL 80
Cdd:MTH00066 336 LFLCSGSIIHSLNDEQDIRKMGGLQKALPITTSCLTIGSLALTGTPFLAGFFSKDAIIEAMNTSNLNSWALILTLIATSF 415

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 142886714  81 TASYSFRLFYYSMMGDNNFYPSSFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPV-PYVIVLPWYLKFLTMFVVILG 158
Cdd:MTH00066 416 TAVYSFRIIYFSSMKFPRSLPLSPINENNPLIINPIKRLAWGSIIAGLLIIFNILPMkPQILTMPTFMKLAALLVTLLG 494
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 1-103 9.80e-28

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 109.54  E-value: 9.80e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886714   1 LFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFVSTGL 80
Cdd:MTH00137 344 LFLCSGSIIHSLNDEQDIRKMGGLHHLTPFTSSCLTIGSLALTGTPFLAGFFSKDAIIEALNTSHLNAWALTLTLIATSF 423

                         90       100
                 ....*....|....*....|...
gi 142886714  81 TASYSFRLFYYSMMGDNNFYPSS 103
Cdd:MTH00137 424 TAVYSLRVVFFVSMGHPRFNPLS 446
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 84-208 6.20e-26

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 98.39  E-value: 6.20e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886714   84 YSFRLFYYSMMGDNNFYPSSFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIVLPWYLKFLTMFVVILGSYLGY 163
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 142886714  164 LVSDFDYFYGLFSLSFlSFVSFLPSMWFMPFLSTNYISYLPLKAG 208
Cdd:pfam06455  81 ELSNLSNKQLKKSLNF-NLHSFSGSMWFFPNLSHRLIPKLSLKLG 124
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 1-200 2.78e-23

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 96.62  E-value: 2.78e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886714   1 LFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFVSTGL 80
Cdd:MTH00210 340 LFLSAGSVIHAVSDEQDMRKMGGLIKSIPFTYVMILIGSLSLMGFPYLTGFYSKDLILELTYDKYYIAFAYWLGSFSALL 419

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886714  81 TASYSFRLFYYSMMGDNNFYPSSFF--DDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIVLPWYLKFLTMFVVILG 158
Cdd:MTH00210 420 TAFYSIRLIYLTFITNTNSKKEVFIgvHESSWNITFPLLLLAFGSIFVGYLGKEVVLSNVIPPIVPNSIKMIPLLFSLLG 499

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 142886714 159 SYLGYLVSDFDYFY------GLFSLSFLSFVSFLPSMWFMPFLSTNYI 200
Cdd:MTH00210 500 ALLAFVIYNSMVFLikisrrGVSIRLYHVIYTFLNSAWQFNYVINHFI 547
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 1-164 1.24e-21

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 92.14  E-value: 1.24e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886714   1 LFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVcLSWVNFLIFFLYFVSTGL 80
Cdd:PRK06590 346 LFLGAGSVIHAMHHEQDIRKMGGLRKKMPVTYATFLIGTLALIGIPPFAGFFSKDEILEAA-FANGHINLFVAGLVGAFL 424

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886714  81 TASYSFRLFYYSMMG---DNNFYPSsffdDKSYFISFGMIGLLFVAVFGG-----SFLSWLIFPVPYVIV-----LPWYL 147
Cdd:PRK06590 425 TAFYSFRLIFLVFHGkekEKIHHPH----ESPAVMTLPLIVLAVLSVFAGalivpPFLGVLPLTTELAHGeaehhLPVWV 500

                        170
                 ....*....|....*..
gi 142886714 148 KFLTMFVVILGSYLGYL 164
Cdd:PRK06590 501 ALLPLVVALAGIALAWL 517
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 1-180 7.71e-21

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 89.75  E-value: 7.71e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886714   1 LFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFVSTGL 80
Cdd:MTH00020 339 LFLSAGSVIHALSDEQDMRKMGGLISFLPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSALL 418

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886714  81 TASYSFRLFYYSMMGDNNFYPSSFFD--DKSYFISFGMIGLLFVAVFGGSFLSWLI-------FPVPYVIV--LPWYLKF 149
Cdd:MTH00020 419 TAFYSIRLIYLTFLSNTNLKKAVFFHlhEGDWNLLLPLGILALGSIFVGYLAKEMIwsfqitlPPIVPLSIklLPVFLSL 498

                        170       180       190
                 ....*....|....*....|....*....|..
gi 142886714 150 L-TMFVVILGSYLGYLVSDFDYFYGLFSLSFL 180
Cdd:MTH00020 499 GgIGLVIILYFYSSKTFRVPFSFIGRNSYTFL 530
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-165 2.18e-20

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 88.29  E-value: 2.18e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886714   1 LFMCAGSMIHNLSdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE-VVCLSWVNFLIFFLYFVSTG 79
Cdd:COG1009  340 LFLGAGSVIHATG-TRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAF 418

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886714  80 LTASYSFRLFYYSMMGDNNFYPSSFFDDKSYFISFGMIGLLFVAVFGGSFLSWL---------IFPVPYVIVLPWYLKFL 150
Cdd:COG1009  419 LTAFYSFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNAL 498

                        170
                 ....*....|....*
gi 142886714 151 TMFVVILGSYLGYLV 165
Cdd:COG1009  499 PLLLSLLGIALGYLL 513
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
1-96 6.45e-16

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 75.45  E-value: 6.45e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886714   1 LFMCAGSMIHNLSD--------SQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSwvNFLIFF 72
Cdd:PRK07376 356 LFLGSGSVIHGMEEvvghdpvlAQDMRLMGGLRKYMPITAITFLIGCLAISGIPPFAGFWSKDEILGAAFEA--NPALWF 433

                         90       100
                 ....*....|....*....|....
gi 142886714  73 LYFVSTGLTASYSFRLFYYSMMGD 96
Cdd:PRK07376 434 VGFLTAGMTAFYMFRMYFLTFEGE 457
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-77 3.57e-11

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 60.79  E-value: 3.57e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 142886714    1 LFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFVS 77
Cdd:pfam00361 215 LFLCAGSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
ndhF CHL00025
NADH dehydrogenase subunit 5
 1-114 7.68e-11

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 60.68  E-value: 7.68e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886714   1 LFMCAGSMIHNL--------SDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVvclSWVNFLIF- 71
Cdd:CHL00025 356 LFLGSGSVIHSMepivgyspDKSQNMVLMGGLRKYMPITKTTFLLGTLSLCGIPPLACFWSKDEILND---SWLYSPIFa 432

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 142886714  72 FLYFVSTGLTASYSFRLFYYSMMGD---NNFYPSSFFDDKSYFISF 114
Cdd:CHL00025 433 IIAWSTAGLTAFYMFRIYLLTFEGHlrvHFQNYSGKKNSSFYSISL 478
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 1-190 2.53e-10

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 59.20  E-value: 2.53e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886714   1 LFMCAGSMIHNLS-DSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCL---------------- 63
Cdd:MTH00032 355 LFLSAGSVIHSTTvDEQDMRKMGGLIHSIPFTYTMMLIGSFSIMGLPYLTGFYSKDLILELTYSgrnmgipfgssllkiq 434

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886714  64 --------------------SWVNFLIFFLYFVSTGLTASYSFRLFYYSMMGDNNFYPSSFFDDKSYFISFGMIGLLFVA 123
Cdd:MTH00032 435 gdigikkddrgsiggpegypSRGSAFAFWLGTVAALLTAFYSIRLVYITFIISPNSPKESLISSHINIVDKRVLTVLSLL 514

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 142886714 124 VFGGSFLSWLIFPV-----------PYVIVLPWYLKFLTMFVVILGSYLGYLVSDFDYFYGLFSLSFLSFVSFLPSMW 190
Cdd:MTH00032 515 CFGAIFVGYLIQDIligdiehpivpPLIKVMPTLMGLFGMGLCLWAQKGTREGELYWGFDPIGPSFLLSIYSFLGGAW 592
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 1-91 2.75e-08

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 52.84  E-value: 2.75e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886714   1 LFMCAGSMIHNLsDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVcLSWVNFLIFFLYFVSTGL 80
Cdd:COG0651  340 LFLAAGAIERAT-GTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAA-LEAGAWLLAAVLLLSSLL 417

                         90
                 ....*....|.
gi 142886714  81 TASYSFRLFYY 91
Cdd:COG0651  418 TLAYFVRIFGR 428
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-90 4.47e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 46.50  E-value: 4.47e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886714   1 LFMCAGSMIHNlSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSwvNFLIFFLY-FVSTG 79
Cdd:PRK12667 363 LFLASGVFIHA-AGTRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLES--GFYLPALVlLIASA 439

                         90
                 ....*....|.
gi 142886714  80 LTASYSFRLFY 90
Cdd:PRK12667 440 ISLVGYFRAWY 450
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 1-95 2.98e-05

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 43.92  E-value: 2.98e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886714   1 LFMCAGsMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILevVCLSWVNFLIFFLYFVSTGL 80
Cdd:COG1008  343 LFLLVG-VLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVL--LGAFQVNPWLAILAALGLIL 419

                         90
                 ....*....|....*
gi 142886714  81 TASYSFRLFYYSMMG 95
Cdd:COG1008  420 TAAYLLWMYQRVFFG 434
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
 1-53 4.70e-05

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 43.36  E-value: 4.70e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 142886714   1 LFMCAGSMIHNlSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYS 53
Cdd:PRK07390 349 LFMSVGSIILT-TITQDLTELGGLWSRMPATTLAFLVGSAGLVALLPLGGFWA 400
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-95 6.24e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 42.94  E-value: 6.24e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886714   1 LFMCAGSMIHNlSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSK-DLILEVVCLSWVNFLIFFLyfVSTG 79
Cdd:PRK08375 339 LFLAAGAIEVT-YGTRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKwYLVVGAVEAGQWLVLAVLL--ASSL 415

                         90
                 ....*....|....*.
gi 142886714  80 LTASYSFRLFYYSMMG 95
Cdd:PRK08375 416 LALLYFLRIWYRAFFG 431
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 1-59 1.09e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 42.41  E-value: 1.09e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 142886714   1 LFMCAGSMIHNLSDsQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 59
Cdd:PRK08667 349 LFLTAGSVVHATGT-RNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYE 406
ND5 MTH00095
NADH dehydrogenase subunit 5; Provisional
 1-202 2.92e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177158 [Multi-domain]  Cd Length: 527  Bit Score: 41.06  E-value: 2.92e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886714   1 LFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFVSTGL 80
Cdd:MTH00095 292 LFMQVGYLIHSNFGQQDGRNYSNNGNLPMFIQLQLLVTLFCLCGLMFTSGMVSKELILELFFFNNYMIFFSLMFFFSVFL 371

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886714  81 TASYSFRLFYYSMMgdnNFYPSSFFDDKSYFISFGMIGLLFVAVFggsFLSWLIFPVPYVIVLPWYLKFLT----MFVVI 156
Cdd:MTH00095 372 TFGYSYRLWKSFFL---SFSKVVNVYSSSVLMNFLSLMLVFFSVF---FLWWLNFNLLNLPSLFLYLDFYVplfyLFMIM 445

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 142886714 157 LGSYLGYLVSDFDYFYGLFSLSFLSFVSFLPSMWFMPFLSTNYISY 202
Cdd:MTH00095 446 LFSFFFFKLLFKELKYKFFVDYFAKNVIYKLKNLKFFDLFLNKFGY 491
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 1-96 2.97e-04

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 40.96  E-value: 2.97e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886714   1 LFMCAGSMIHNLSdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILevVCLSWVNFLIFFLYFVSTGL 80
Cdd:PRK05846 345 LFLLVGVLYDRLH-TRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTSGFVGEFLIL--LGSFQVNPVIAFIATTGLIL 421

                         90
                 ....*....|....*.
gi 142886714  81 TASYSFRLFYYSMMGD 96
Cdd:PRK05846 422 AAVYSLWLYQRVMFGP 437
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
 1-87 4.05e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 40.56  E-value: 4.05e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886714   1 LFMCAGSMIHNlSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDL----ILEVVCLSWVNFLIFFLYFV 76
Cdd:PRK12648 339 LFMAAGIIDHE-TGTRDMRRLSGLRRLMPITATLAMVAAAAMAGVPLLNGFLSKEMffaeTLDTHLLGSLDWLLPVAATL 417

                         90
                 ....*....|.
gi 142886714  77 STGLTASYSFR 87
Cdd:PRK12648 418 AGAFSVAYSLR 428
PRK12650 PRK12650
DUF4040 family protein;
1-59 4.37e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 40.80  E-value: 4.37e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 142886714   1 LFMCAGSMIHNlSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 59
Cdd:PRK12650 340 LFMLIGVVDHQ-AGTRDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSKEGMLT 397
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-95 4.68e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 40.47  E-value: 4.68e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886714   1 LFMCAGSMIHNLSdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLswVNFLIFFLYFVSTGL 80
Cdd:PRK08376 367 LFLTAGAVIYETG-TRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESSAL--FNPILGVIAMIGSVL 443

                         90
                 ....*....|....*
gi 142886714  81 TASYSFRLFYYSMMG 95
Cdd:PRK08376 444 TLASFVKVFHTAFFG 458
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
1-58 9.07e-04

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 39.49  E-value: 9.07e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 142886714   1 LFMCAGSMIHNLSDSqDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 58
Cdd:PRK12668 308 LFMSAGAVLYRTGTE-KLTELGGLYRSMPLTALFCLVGALSISAFPLFSGFVSKSMII 364
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-124 1.53e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 38.64  E-value: 1.53e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886714   1 LFMCAGSmIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLS---WVNFLIFFLYFVS 77
Cdd:PRK06589 348 LFYSMGS-IYSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQnqpWLSIIVMLVVIAS 426

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 142886714  78 TGLTASYSFRLFYysmmgdNNFYPSSffdDKSYFISFGMIGLLFVAV 124
Cdd:PRK06589 427 SILSALYLLKILS------SIYKPSL---SENSFITKSLPYLMQISV 464
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 1-64 2.56e-03

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 38.33  E-value: 2.56e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 142886714   1 LFMCAGSMIHNLSdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLS 64
Cdd:PRK06521 355 LFLGAGAVLHATG-TRDMEKLGGLIRRMPWTAWAFLIGCLAISALPPLNGFVSEWLLLQSLLSS 417
PRK12646 PRK12646
DUF4040 family protein;
1-59 2.79e-03

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 38.20  E-value: 2.79e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 142886714   1 LFMCAGSMIHNlSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 59
Cdd:PRK12646 356 LFMGVGIIDHE-AGTRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKEMFLD 413
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-101 3.23e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 37.62  E-value: 3.23e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886714   1 LFMCAGSMIHnLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVcLSWVNFLIFFLYFVSTGL 80
Cdd:PRK07691 343 LFLLIGIMIK-ITGTTDLKKMGGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVEGT-FEAGFYVSGIIVLLSSLL 420

                         90       100
                 ....*....|....*....|.
gi 142886714  81 TASYSFRLFYYSMMGDNNFYP 101
Cdd:PRK07691 421 VLYSVIKIFLKGFWGEPKGYD 441
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 1-61 5.77e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 37.21  E-value: 5.77e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 142886714   1 LFMCAGSMIHNlSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVV 61
Cdd:PRK12647 327 LFMVAGIIDHE-TGTRDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYEAL 386
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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