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Conserved domains on  [gi|142886484|gb|ABO92769|]
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cytochrome b, partial (mitochondrion) [Rhogeessa io]

Protein Classification

cytochrome b( domain architecture ID 11475898)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-362 0e+00

cytochrome b; Provisional


:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 711.41  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484   1 FIDLPAPSNISSWWNF*SLLGICLGLQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLHANGASMFFICLYLH 80
Cdd:MTH00100  18 FIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLH 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484  81 VGRGLYYGSYLYKETWNVGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTR 160
Cdd:MTH00100  98 VGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTR 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484 161 FFAFHFLLPFIIAAMVMVHLLFLHETGSNNPTGIPSNMDMIPFHPYYTIKDILGLLMMIMALLMLVLFSPDMLGDPDNYT 240
Cdd:MTH00100 178 FFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYT 257

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484 241 PANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILAIIPLLHTSKQRSMTFRPFSQCLFWLLAAVLVTLTW 320
Cdd:MTH00100 258 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTW 337

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|..
gi 142886484 321 IGGQPVEHPYVIIGQLTSVLYFLIIIVLMPLVSLMENHLLKW 362
Cdd:MTH00100 338 IGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLKW 379
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-362 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 711.41  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484   1 FIDLPAPSNISSWWNF*SLLGICLGLQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLHANGASMFFICLYLH 80
Cdd:MTH00100  18 FIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLH 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484  81 VGRGLYYGSYLYKETWNVGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTR 160
Cdd:MTH00100  98 VGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTR 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484 161 FFAFHFLLPFIIAAMVMVHLLFLHETGSNNPTGIPSNMDMIPFHPYYTIKDILGLLMMIMALLMLVLFSPDMLGDPDNYT 240
Cdd:MTH00100 178 FFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYT 257

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484 241 PANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILAIIPLLHTSKQRSMTFRPFSQCLFWLLAAVLVTLTW 320
Cdd:MTH00100 258 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTW 337

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|..
gi 142886484 321 IGGQPVEHPYVIIGQLTSVLYFLIIIVLMPLVSLMENHLLKW 362
Cdd:MTH00100 338 IGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLKW 379
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-356 5.42e-124

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 362.19  E-value: 5.42e-124
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484   1 FIDLPAPSNISSWWNF*SLLGICLGLQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLHANGASMFFICLYLH 80
Cdd:COG1290   27 HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLH 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484  81 VGRGLYYGSylYKE----TWNVGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKA 156
Cdd:COG1290  107 MFRGFFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDA 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484 157 TLTRFFAFH-FLLPFIIAAMVMVHLLFLHETGSNNPTGI----PSNMDMIPFHPYYTIKDILGLLMMIMALLMLVLFSPD 231
Cdd:COG1290  185 TLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI 264

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484 232 mlGDPDNYTPANPLSTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALVLSILILAIIPLLHTSKQRSMTFRPFSQCLFW 309
Cdd:COG1290  265 --NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGV 342

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*..
gi 142886484 310 LLAAVLVTLTWIGGQPVehPYVIIGQLTSVLYFLIIIVLMPLVSLME 356
Cdd:COG1290  343 AFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-189 9.56e-95

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 280.79  E-value: 9.56e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484   1 FIDLPAPSNISSWWNF*SLLGICLGLQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLHANGASMFFICLYLH 80
Cdd:cd00284   10 LIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLH 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484  81 VGRGLYYGSY--LYKETWNVGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATL 158
Cdd:cd00284   90 IFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATL 169

                        170       180       190
                 ....*....|....*....|....*....|.
gi 142886484 159 TRFFAFHFLLPFIIAAMVMVHLLFLHETGSN 189
Cdd:cd00284  170 TRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-187 7.45e-87

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 260.39  E-value: 7.45e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484    1 FIDLPAPSNISSWWNF*SLLGICLGLQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLHANGASMFFICLYLH 80
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484   81 VGRGLYYG--SYLYKETWNVGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATL 158
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 142886484  159 TRFFAFHFLLPFIIAAMVMVHLLFLHETG 187
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 230-276 1.90e-07

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 50.18  E-value: 1.90e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 142886484  230 PDMLGDPdnytpANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLA 276
Cdd:TIGR01156  59 PAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLL 100
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-362 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 711.41  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484   1 FIDLPAPSNISSWWNF*SLLGICLGLQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLHANGASMFFICLYLH 80
Cdd:MTH00100  18 FIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLH 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484  81 VGRGLYYGSYLYKETWNVGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTR 160
Cdd:MTH00100  98 VGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTR 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484 161 FFAFHFLLPFIIAAMVMVHLLFLHETGSNNPTGIPSNMDMIPFHPYYTIKDILGLLMMIMALLMLVLFSPDMLGDPDNYT 240
Cdd:MTH00100 178 FFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYT 257

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484 241 PANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILAIIPLLHTSKQRSMTFRPFSQCLFWLLAAVLVTLTW 320
Cdd:MTH00100 258 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTW 337

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|..
gi 142886484 321 IGGQPVEHPYVIIGQLTSVLYFLIIIVLMPLVSLMENHLLKW 362
Cdd:MTH00100 338 IGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLKW 379
CYTB MTH00119
cytochrome b; Provisional
 1-362 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 649.66  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484   1 FIDLPAPSNISSWWNF*SLLGICLGLQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLHANGASMFFICLYLH 80
Cdd:MTH00119  19 LIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLH 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484  81 VGRGLYYGSYLYKETWNVGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTR 160
Cdd:MTH00119  99 IGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTR 178

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484 161 FFAFHFLLPFIIAAMVMVHLLFLHETGSNNPTGIPSNMDMIPFHPYYTIKDILGLLMMIMALLMLVLFSPDMLGDPDNYT 240
Cdd:MTH00119 179 FFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFT 258

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484 241 PANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILAIIPLLHTSKQRSMTFRPFSQCLFWLLAAVLVTLTW 320
Cdd:MTH00119 259 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTW 338

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|..
gi 142886484 321 IGGQPVEHPYVIIGQLTSVLYFLIIIVLMPLVSLMENHLLKW 362
Cdd:MTH00119 339 IGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLNY 380
CYTB MTH00131
cytochrome b; Provisional
 1-362 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 633.23  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484   1 FIDLPAPSNISSWWNF*SLLGICLGLQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLHANGASMFFICLYLH 80
Cdd:MTH00131  18 LVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLH 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484  81 VGRGLYYGSYLYKETWNVGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTR 160
Cdd:MTH00131  98 IGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTR 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484 161 FFAFHFLLPFIIAAMVMVHLLFLHETGSNNPTGIPSNMDMIPFHPYYTIKDILGLLMMIMALLMLVLFSPDMLGDPDNYT 240
Cdd:MTH00131 178 FFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFT 257

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484 241 PANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILAIIPLLHTSKQRSMTFRPFSQCLFWLLAAVLVTLTW 320
Cdd:MTH00131 258 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTW 337

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|..
gi 142886484 321 IGGQPVEHPYVIIGQLTSVLYFLIIIVLMPLVSLMENHLLKW 362
Cdd:MTH00131 338 IGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALEW 379
CYTB MTH00074
cytochrome b; Provisional
 1-362 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 620.16  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484   1 FIDLPAPSNISSWWNF*SLLGICLGLQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLHANGASMFFICLYLH 80
Cdd:MTH00074  19 FIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLH 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484  81 VGRGLYYGSYLYKETWNVGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTR 160
Cdd:MTH00074  99 IGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTR 178

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484 161 FFAFHFLLPFIIAAMVMVHLLFLHETGSNNPTGIPSNMDMIPFHPYYTIKDILGLLMMIMALLMLVLFSPDMLGDPDNYT 240
Cdd:MTH00074 179 FFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFT 258

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484 241 PANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILAIIPLLHTSKQRSMTFRPFSQCLFWLLAAVLVTLTW 320
Cdd:MTH00074 259 PANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTW 338

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|..
gi 142886484 321 IGGQPVEHPYVIIGQLTSVLYFLIIIVLMPLVSLMENHLLKW 362
Cdd:MTH00074 339 IGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLLKW 380
CYTB MTH00191
cytochrome b; Provisional
 1-351 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 587.65  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484   1 FIDLPAPSNISSWWNF*SLLGICLGLQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLHANGASMFFICLYLH 80
Cdd:MTH00191  15 LIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLH 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484  81 VGRGLYYGSYLYKETWNVGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTR 160
Cdd:MTH00191  95 IGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTR 174

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484 161 FFAFHFLLPFIIAAMVMVHLLFLHETGSNNPTGIPSNMDMIPFHPYYTIKDILGLLMMIMALLMLVLFSPDMLGDPDNYT 240
Cdd:MTH00191 175 FFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFI 254

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484 241 PANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILAIIPLLHTSKQRSMTFRPFSQCLFWLLAAVLVTLTW 320
Cdd:MTH00191 255 PANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTW 334

                        330       340       350
                 ....*....|....*....|....*....|.
gi 142886484 321 IGGQPVEHPYVIIGQLTSVLYFLIIIVLMPL 351
Cdd:MTH00191 335 LGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
CYTB MTH00156
cytochrome b; Provisional
 2-349 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 582.90  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484   2 IDLPAPSNISSWWNF*SLLGICLGLQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLHANGASMFFICLYLHV 81
Cdd:MTH00156   9 IDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHI 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484  82 GRGLYYGSYLYKETWNVGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRF 161
Cdd:MTH00156  89 GRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRF 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484 162 FAFHFLLPFIIAAMVMVHLLFLHETGSNNPTGIPSNMDMIPFHPYYTIKDILGLLMMIMALLMLVLFSPDMLGDPDNYTP 241
Cdd:MTH00156 169 FTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIP 248

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484 242 ANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILAIIPLLHTSKQRSMTFRPFSQCLFWLLAAVLVTLTWI 321
Cdd:MTH00156 249 ANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWI 328

                        330       340
                 ....*....|....*....|....*...
gi 142886484 322 GGQPVEHPYVIIGQLTSVLYFLIIIVLM 349
Cdd:MTH00156 329 GARPVEEPYILTGQILTILYFLYFIINP 356
CYTB MTH00034
cytochrome b; Validated
 1-360 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 558.17  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484   1 FIDLPAPSNISSWWNF*SLLGICLGLQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLHANGASMFFICLYLH 80
Cdd:MTH00034  18 LIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFH 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484  81 VGRGLYYGSYLYKETWNVGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTR 160
Cdd:MTH00034  98 IGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTR 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484 161 FFAFHFLLPFIIAAMVMVHLLFLHETGSNNPTGIPSNMDMIPFHPYYTIKDILGLLMMIMALLMLVLFSPDMLGDPDNYT 240
Cdd:MTH00034 178 FFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFI 257

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484 241 PANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILAIIPLLHTSKQRSMTFRPFSQCLFWLLAAVLVTLTW 320
Cdd:MTH00034 258 PANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTW 337

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|
gi 142886484 321 IGGQPVEHPYVIIGQLTSVLYFLIIIVLMPLVSLMENHLL 360
Cdd:MTH00034 338 IGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENKLI 377
CYTB MTH00145
cytochrome b; Provisional
 1-360 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 554.13  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484   1 FIDLPAPSNISSWWNF*SLLGICLGLQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLHANGASMFFICLYLH 80
Cdd:MTH00145  19 LYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLH 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484  81 VGRGLYYGSYLYKETWNVGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTR 160
Cdd:MTH00145  99 IGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKR 178

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484 161 FFAFHFLLPFIIAAMVMVHLLFLHETGSNNPTGIPSNMDMIPFHPYYTIKDILGLLMMIMALLMLVLFSPDMLGDPDNYT 240
Cdd:MTH00145 179 FFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFI 258

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484 241 PANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILAIIPLLHTSKQRSMTFRPFSQCLFWLLAAVLVTLTW 320
Cdd:MTH00145 259 PANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTW 338

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|
gi 142886484 321 IGGQPVEHPYVIIGQLTSVLYFLIIIVLmPLVSLMENHLL 360
Cdd:MTH00145 339 IGACPVEEPYETIGQVFTVLYFLFFLIL-PLVQKLWDNIL 377
CYTB MTH00016
cytochrome b; Validated
 1-361 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 530.79  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484   1 FIDLPAPSNISSWWNF*SLLGICLGLQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLHANGASMFFICLYLH 80
Cdd:MTH00016  19 LVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLH 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484  81 VGRGLYYGSYLYKETWNVGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTR 160
Cdd:MTH00016  99 IGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTR 178

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484 161 FFAFHFLLPFIIAAMVMVHLLFLHETGSNNPTGIPSNMDMIPFHPYYTIKDILGLLMMIMALLMLVLFSPDMLGDPDNYT 240
Cdd:MTH00016 179 FFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFI 258

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484 241 PANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILAIIPLLHTSKQRSMTFRPFSQCLFWLLAAVLVTLTW 320
Cdd:MTH00016 259 PANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTW 338

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 142886484 321 IGGQPVEHPYVIIGQLTSVLYFlIIIVLMPLVSLMENHLLK 361
Cdd:MTH00016 339 IGGRPVEPPYEFLGQIFTVFYF-FYFMINPLLMKLWDKLLK 378
CYTB MTH00022
cytochrome b; Validated
 2-361 1.48e-171

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 482.66  E-value: 1.48e-171
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484   2 IDLPAPSNISSWWNF*SLLGICLGLQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLHANGASMFFICLYLHV 81
Cdd:MTH00022  18 VDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHI 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484  82 GRGLYYGSYLYKETWNVGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRF 161
Cdd:MTH00022  98 GRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRF 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484 162 FAFHFLLPFIIAAMVMVHLLFLHETGSNNPTGIPSNMDMIPFHPYYTIKDILGLLMMIMALLMLVLFSPDMLGDPDNYTP 241
Cdd:MTH00022 178 FSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQ 257

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484 242 ANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILAIIPLLHTSKQRSMTFRPFSQCLFWLLAAVLVTLTWI 321
Cdd:MTH00022 258 ANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWI 337

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|
gi 142886484 322 GGQPVEHPYVIIGQLTSVLYFLIIIVLMPLVSLMENHLLK 361
Cdd:MTH00022 338 GSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQLLF 377
CYTB MTH00053
cytochrome b; Provisional
 1-361 1.96e-170

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 479.97  E-value: 1.96e-170
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484   1 FIDLPAPSNISSWWNF*SLLGICLGLQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLHANGASMFFICLYLH 80
Cdd:MTH00053  19 FIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFH 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484  81 VGRGLYYGSYLYKETWNVGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTR 160
Cdd:MTH00053  99 IGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNR 178

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484 161 FFAFHFLLPFIIAAMVMVHLLFLHETGSNNPTGIPSNMDMIPFHPYYTIKDILGLLMMIMALLMLVLFSPDMLGDPDNYT 240
Cdd:MTH00053 179 FYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFK 258

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484 241 PANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILAIIPLLHTSKQRSMTFRPFSQCLFWLLAAVLVTLTW 320
Cdd:MTH00053 259 QANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTW 338

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 142886484 321 IGGQPVEHPYVIIGQLTSVLYFLIIIVLMPLVSLMENHLLK 361
Cdd:MTH00053 339 IGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLLK 379
CYTB MTH00224
cytochrome b; Provisional
 1-361 4.82e-162

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 458.62  E-value: 4.82e-162
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484   1 FIDLPAPSNISSWWNF*SLLGICLGLQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLHANGASMFFICLYLH 80
Cdd:MTH00224  19 LIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLH 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484  81 VGRGLYYGSYLYKETWNVGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTR 160
Cdd:MTH00224  99 VGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNR 178

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484 161 FFAFHFLLPFIIAAMVMVHLLFLHETGSNNPTGIPSNMDMIPFHPYYTIKDILGLLMMIMALLMLVLFSPDMLGDPDNYT 240
Cdd:MTH00224 179 FFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFL 258

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484 241 PANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILAIIPLLHTSKQRSMTFRPFSQCLFWLLAAVLVTLTW 320
Cdd:MTH00224 259 MANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTW 338

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 142886484 321 IGGQPVEHPYVIIGQLTSVLYFLIIIVlMPLVSLMENHLLK 361
Cdd:MTH00224 339 IGGRPVEDPFEGIGQVFTILYFSYFII-SPAISKLWDDLLN 378
CYTB MTH00033
cytochrome b; Provisional
 2-357 1.04e-129

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 376.59  E-value: 1.04e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484   2 IDLPAPSNISSWWNF*SLLGICLGLQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLHANGASMFFICLYLHV 81
Cdd:MTH00033  16 IDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHI 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484  82 GRGLYYGSYLYKETWNVGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRF 161
Cdd:MTH00033  96 GRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRF 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484 162 FAFHFLLPFIIAAMVMVHLLFLHETGSNNPTGIPSNMDMIPFHPYYTIKDILGLLMMIMALLMLVLFS--PDMLGDPDNY 239
Cdd:MTH00033 176 FSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDPENF 255

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484 240 TPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILAIIPLLHTSKQRSMTFRPFSQCLFWLLAAVLVTLT 319
Cdd:MTH00033 256 IQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILT 335

                        330       340       350
                 ....*....|....*....|....*....|....*....
gi 142886484 320 WIGGQPV-EHPYVIIGQLTSVLYFLIIIVLMPLVSLMEN 357
Cdd:MTH00033 336 WIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-356 5.42e-124

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 362.19  E-value: 5.42e-124
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484   1 FIDLPAPSNISSWWNF*SLLGICLGLQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLHANGASMFFICLYLH 80
Cdd:COG1290   27 HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLH 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484  81 VGRGLYYGSylYKE----TWNVGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKA 156
Cdd:COG1290  107 MFRGFFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDA 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484 157 TLTRFFAFH-FLLPFIIAAMVMVHLLFLHETGSNNPTGI----PSNMDMIPFHPYYTIKDILGLLMMIMALLMLVLFSPD 231
Cdd:COG1290  185 TLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI 264

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484 232 mlGDPDNYTPANPLSTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALVLSILILAIIPLLHTSKQRSMTFRPFSQCLFW 309
Cdd:COG1290  265 --NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGV 342

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*..
gi 142886484 310 LLAAVLVTLTWIGGQPVehPYVIIGQLTSVLYFLIIIVLMPLVSLME 356
Cdd:COG1290  343 AFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
 2-349 1.17e-114

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 337.30  E-value: 1.17e-114
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484   2 IDLPAPSNISSWWNF*SLLGICLGLQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLHANGASMFFICLYLHV 81
Cdd:MTH00086   8 VTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHI 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484  82 GRGLYYGSYLYKETWNVGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRF 161
Cdd:MTH00086  88 FKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFF 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484 162 FAFHFLLPFIIAAMVMVHLLFLHETGSNNPTGIPSNMDMIPFHPYYTIKDiLGLLMMIMALLMLVLFSPDMLGDPDNYTP 241
Cdd:MTH00086 168 FVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKD-AYNIIFWLVFIIFSLFYPFNLGDPEMFIE 246

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484 242 ANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILAIIPLLHTSkqrSMTFRPFSQCLFWLLAAVLVTLTWI 321
Cdd:MTH00086 247 ADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNY---TSCLNKLNKFLVFSFIVVNVILSWL 323

                        330       340
                 ....*....|....*....|....*...
gi 142886484 322 GGQPVEHPYVIIGQLTSVLYFLIIIVLM 349
Cdd:MTH00086 324 GQCLVEYPFLFLSQIFSFIYFFLILLML 351
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-189 9.56e-95

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 280.79  E-value: 9.56e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484   1 FIDLPAPSNISSWWNF*SLLGICLGLQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLHANGASMFFICLYLH 80
Cdd:cd00284   10 LIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLH 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484  81 VGRGLYYGSY--LYKETWNVGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATL 158
Cdd:cd00284   90 IFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATL 169

                        170       180       190
                 ....*....|....*....|....*....|.
gi 142886484 159 TRFFAFHFLLPFIIAAMVMVHLLFLHETGSN 189
Cdd:cd00284  170 TRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 2-347 3.38e-87

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 267.23  E-value: 3.38e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484   2 IDLPAPSNISSWWNF*SLLGICLGLQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLHANGASMFFICLYLHV 81
Cdd:MTH00046  10 IDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHM 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484  82 GRGLYYGSYLYKETWNVGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRF 161
Cdd:MTH00046  90 GRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRV 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484 162 FAFHFLLPFIIAAMVMVHLLFLHETGSNNPTGIPSNM-DMIPFHPYYTIKDILGLLMMIMALLMLVLFSPDMLGDPDNYT 240
Cdd:MTH00046 170 FSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYsDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYL 249

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484 241 PANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILAIipllhTSKQRSMTFRPFSQCLFWLLAAVLVTLTW 320
Cdd:MTH00046 250 EADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLVLVLSFLFFLWV-----PTFNGSSVYSVWRQVNFWLIVSLFFSLSY 324

                        330       340
                 ....*....|....*....|....*..
gi 142886484 321 IGGQPVEHPYVIIGQLTSVLYFLIIIV 347
Cdd:MTH00046 325 LGGCHPEYPYLLISQLFSVLMVLLLFI 351
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-187 7.45e-87

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 260.39  E-value: 7.45e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484    1 FIDLPAPSNISSWWNF*SLLGICLGLQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLHANGASMFFICLYLH 80
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484   81 VGRGLYYG--SYLYKETWNVGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATL 158
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 142886484  159 TRFFAFHFLLPFIIAAMVMVHLLFLHETG 187
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 190-336 3.97e-44

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 148.95  E-value: 3.97e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484 190 NPTGIPSNMDMIPFHPYYTIKDILGLLMMIMALLMLVLFSPDMLGDPDNYTPANPLSTPPHIKPEWYFLFAYAILRSIPN 269
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 142886484 270 KLGGVLALVLSILILAIIPLLHTSKQRSmTFRPFSQCLFWLLAAVLVTLTWIGGQPVEHPYVIIGQL 336
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQL 146
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
71-236 1.32e-43

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 148.54  E-value: 1.32e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484   71 SMFFICLYLHVGRGLYYGSYLYKE--TWNVGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIW 148
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484  149 GGFSVDKATLTRFFAFHF-LLPFIIAAMVMVHLLFLHETGSNNPTGIPSNMDMIPFHPYYTIKDILGLLMMIMALLMLVL 227
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 142886484  228 FSPDMLGDP 236
Cdd:pfam13631 161 INPIWLGGP 169
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
241-341 7.10e-38

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 131.06  E-value: 7.10e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484  241 PANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILAIIPLLHTSKQRSMTFRPFSQCLFWLLAAVLVTLTW 320
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 142886484  321 IGGQPVEHPYVIIGQLTSVLY 341
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
PRK03735 PRK03735
cytochrome b6; Provisional
 22-191 1.28e-37

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 134.84  E-value: 1.28e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484  22 ICLGLQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLHANGASMFFICLYLHVGRGLYYGSYLYKE--TWNVG 99
Cdd:PRK03735  50 FCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVG 129

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484 100 IILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAFH-FLLPFIIAAMVMV 178
Cdd:PRK03735 130 VLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLA 209

                        170
                 ....*....|...
gi 142886484 179 HLLFLHETGSNNP 191
Cdd:PRK03735 210 HFLMIRKQGISGP 222
petB CHL00070
cytochrome b6
 16-191 5.24e-31

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 117.13  E-value: 5.24e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484  16 F*SLLGI---CLGLQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLHANGASMFFICLYLHVGRGLYYGSYLY 92
Cdd:CHL00070  33 FYCLGGItltCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKK 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886484  93 KE--TWNVGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAFH-FLLP 169
Cdd:CHL00070 113 PRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLP 192

                        170       180
                 ....*....|....*....|..
gi 142886484 170 FIIAAMVMVHLLFLHETGSNNP 191
Cdd:CHL00070 193 LLTAVFMLMHFLMIRKQGISGP 214
petD CHL00058
cytochrome b6/f complex subunit IV
 230-276 7.66e-09

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 54.24  E-value: 7.66e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 142886484 230 PDMLGDPdnytpANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLA 276
Cdd:CHL00058  59 PSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLL 100
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 230-276 1.96e-08

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 53.26  E-value: 1.96e-08
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 142886484 230 PDMLGDPdnytpANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLA 276
Cdd:COG5679   60 PAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVM 101
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 230-276 1.90e-07

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 50.18  E-value: 1.90e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 142886484  230 PDMLGDPdnytpANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLA 276
Cdd:TIGR01156  59 PAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLL 100
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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