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Conserved domains on  [gi|14141870|ref|NP_115350|]
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NADH dehydrogenase subunit 1 (mitochondrion) [Casuarius casuarius]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009570)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 2-323 0e+00

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 214422  Cd Length: 323  Bit Score: 593.03  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870    2 QSSALNHLTMSLSYAIPILIAVAFLTLVERKVLSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPTTSSPLLFIMTP 81
Cdd:MTH00111   1 MPTLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870   82 ILALLLAITIWIPLPLPFSLTDLNLGLLFLLSMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVIM 161
Cdd:MTH00111  81 ILALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870  162 LSGNYTLNTLAITQEPLYLIFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMN 241
Cdd:MTH00111 161 LSGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMN 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870  242 TLTAILFLNPSSLNLPPELFPLALATKTLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSMPISYAGLP 321
Cdd:MTH00111 241 TLTTILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLP 320


                 ..
gi 14141870  322 PH 323
Cdd:MTH00111 321 PQ 322
 
Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 2-323 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 593.03  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870    2 QSSALNHLTMSLSYAIPILIAVAFLTLVERKVLSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPTTSSPLLFIMTP 81
Cdd:MTH00111   1 MPTLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870   82 ILALLLAITIWIPLPLPFSLTDLNLGLLFLLSMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVIM 161
Cdd:MTH00111  81 ILALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870  162 LSGNYTLNTLAITQEPLYLIFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMN 241
Cdd:MTH00111 161 LSGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMN 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870  242 TLTAILFLNPSSLNLPPELFPLALATKTLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSMPISYAGLP 321
Cdd:MTH00111 241 TLTTILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLP 320


                 ..
gi 14141870  322 PH 323
Cdd:MTH00111 321 PQ 322
NADHdh pfam00146
NADH dehydrogenase;
13-309 4.62e-107

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 314.41  E-value: 4.62e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870    13 LSYAIPILIAVAFLTLVERKVLSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPTTSSPLLFIMTPILALLLAITIW 92
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870    93 --IPLPLPFSLTDLNLGLLFLLSMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVIMLSGNYTLNT 170
Cdd:pfam00146  83 avIPFGPGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870   171 LAITQEPLYLIFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTAILFLn 250
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFL- 241

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 14141870   251 psSLNLPPELFPLALATK--TLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLW 309
Cdd:pfam00146 242 --GGWLGPFPLPGLLWFLlkVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 17-305 1.36e-95

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 286.26  E-value: 1.36e-95
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870  17 IPILIAVAFLTLVERKVLSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPTTSSPLLFIMTPILALLLAITIWIPLP 96
Cdd:COG1005  20 VFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPALLAFAVIP 99

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870  97 L--PFSLTDLNLGLLFLLSMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVIMLSGnyTLNTLAIT 174
Cdd:COG1005 100 FgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAG--SLNLSEIV 177

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870 175 ---QEPLYLIFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTAILFL-- 249
Cdd:COG1005 178 eaqAGGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSALATTLFLgg 257

                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 14141870 250 ------NPSSLNLPPELFplaLATKTLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLA 305
Cdd:COG1005 258 wlgpfpILPLGGLPGILW---FLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLV 316
 
Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 2-323 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 593.03  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870    2 QSSALNHLTMSLSYAIPILIAVAFLTLVERKVLSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPTTSSPLLFIMTP 81
Cdd:MTH00111   1 MPTLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870   82 ILALLLAITIWIPLPLPFSLTDLNLGLLFLLSMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVIM 161
Cdd:MTH00111  81 ILALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870  162 LSGNYTLNTLAITQEPLYLIFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMN 241
Cdd:MTH00111 161 LSGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMN 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870  242 TLTAILFLNPSSLNLPPELFPLALATKTLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSMPISYAGLP 321
Cdd:MTH00111 241 TLTTILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLP 320


                 ..
gi 14141870  322 PH 323
Cdd:MTH00111 321 PQ 322
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 1-323 1.21e-179

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 499.13  E-value: 1.21e-179
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870    1 MQSSALNHLTMSLSYAIPILIAVAFLTLVERKVLSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPTTSSPLLFIMT 80
Cdd:MTH00134   1 MLSTLITHIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLAT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870   81 PILALLLAITIWIPLPLPFSLTDLNLGLLFLLSMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVI 160
Cdd:MTH00134  81 PMLALTLALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVI 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870  161 MLSGNYTLNTLAITQEPLYLIFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLM 240
Cdd:MTH00134 161 IFTGGFTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870  241 NTLTAILFLNPSSLNLPPELFPLALATKTLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSMPISYAGL 320
Cdd:MTH00134 241 NTLSAILFLGASHIPTLPELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGL 320


                 ...
gi 14141870  321 PPH 323
Cdd:MTH00134 321 PPQ 323
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 6-322 1.58e-176

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 491.06  E-value: 1.58e-176
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870    6 LNHLTMSLSYAIPILIAVAFLTLVERKVLSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPTTSSPLLFIMTPILAL 85
Cdd:MTH00071   5 ISLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPTMAL 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870   86 LLAITIWIPLPLPFSLTDLNLGLLFLLSMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVIMLSGN 165
Cdd:MTH00071  85 TLALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILLTGG 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870  166 YTLNTLAITQEPLYLIFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTA 245
Cdd:MTH00071 165 FSLMNFNTTQEFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTLST 244

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 14141870  246 ILFLNPSSLNLPPELFPLALATKTLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSMPISYAGLPP 322
Cdd:MTH00071 245 ILFLGSTYNHLQPELSTMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHISLPISTLGIPP 321
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 13-323 5.56e-176

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 489.52  E-value: 5.56e-176
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870   13 LSYAIPILIAVAFLTLVERKVLSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPTTSSPLLFIMTPILALLLAITIW 92
Cdd:MTH00104   7 LLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALTLALTMW 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870   93 IPLPLPFSLTDLNLGLLFLLSMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVIMLSGNYTLNTLA 172
Cdd:MTH00104  87 IPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFTLSTLI 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870  173 ITQEPLYLIFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTAILFLNPS 252
Cdd:MTH00104 167 TTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTILFLGAF 246

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 14141870  253 SLNLPPELFPLALATKTLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSMPISYAGLPPH 323
Cdd:MTH00104 247 HNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQ 317
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 12-322 1.72e-145

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 412.00  E-value: 1.72e-145
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870   12 SLSYAIPILIAVAFLTLVERKVLSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPTTSSPLLFIMTPILALLLAITI 91
Cdd:MTH00218   8 LLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILALTLALLL 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870   92 WIPLPLPFSLTDLNLGLLFLLSMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVIMLSGNYTLNTL 171
Cdd:MTH00218  88 WMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTGGFSLEGF 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870  172 AITQEPLYLIFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTAILFLNP 251
Cdd:MTH00218 168 NLTQETIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLSVILFLGT 247

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 14141870  252 SSLNLppelfplALATKTLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSMPISYAGLPP 322
Cdd:MTH00218 248 SLTTI-------NLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSLPLSFASLPP 311
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 12-323 2.30e-135

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 387.02  E-value: 2.30e-135
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870   12 SLSYAIPILIAVAFLTLVERKVLSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPTTSSPLLFIMTPILALLLAITI 91
Cdd:MTH00040  10 LLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPVLFLFLALLL 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870   92 WIPLPLPFSLTDLNLGLLFLLSMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVIMLSGNYTLNTL 171
Cdd:MTH00040  90 WSLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIFSGSFSLSSI 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870  172 AITQEPLYLIFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTAILFLNP 251
Cdd:MTH00040 170 SNSQNGSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNLLSVILFLGG 249

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 14141870  252 SS-LNLPPELFPLALATKTLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSMPISYAGLPPH 323
Cdd:MTH00040 250 GSpFNEIFPINIIIVGIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLLLSLLNILPPN 322
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 9-319 4.10e-113

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 329.78  E-value: 4.10e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870    9 LTMSLSYAIPILIAVAFLTLVERKVLSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPTTSSPLLFIMTPILALLLA 88
Cdd:MTH00195   5 VIHFLIQIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLALALA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870   89 ITIWIPLPLPFSLTDLNLGLLFLLSMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVIMLSGNYTL 168
Cdd:MTH00195  85 LILWVPIPSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAGSFDF 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870  169 NTLAITQEPLYLIFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTAILF 248
Cdd:MTH00195 165 TIMVISQGFSWVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLTTILF 244

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 14141870  249 LNPSSLNLppelfplaLATKTLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSMPISYAG 319
Cdd:MTH00195 245 LGGGGTII--------VALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLAAIPFALNS 307
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 6-306 8.62e-111

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 324.13  E-value: 8.62e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870    6 LNHLTMSLSYAIPILIAVAFLTLVERKVLSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPTTSSPLLFIMTPILAL 85
Cdd:MTH00143   1 LVSLLSSVFTYLCVLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870   86 LLAITIWIPLPLPFSLTDLNLGLLFLLSMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVIMLSGN 165
Cdd:MTH00143  81 ILALLLWQLYPSYFSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870  166 YTLNTLAITQEPLYLIFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTA 245
Cdd:MTH00143 161 FSFIEISESQFSVWLGFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTV 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 14141870  246 ILFLnpSSLNLPPELFPLALATKTLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLAL 306
Cdd:MTH00143 241 VLFF--GGSSVLFLLGGVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSI 299
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 17-315 6.80e-110

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 321.72  E-value: 6.80e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870   17 IPILIAVAFLTLVERKVLSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPTTSSPLLFIMTPILALLLAITIWIPLP 96
Cdd:MTH00193  13 ICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLFLSLLIWLIYP 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870   97 LPFSLTDLNLGLLFLLSMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVIMLSGNYTLNTLAITQE 176
Cdd:MTH00193  93 YLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGSFNLLDFMNYQK 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870  177 PLYLIFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTAILFLNPSSLNL 256
Cdd:MTH00193 173 YIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLFVLMFLGGDLLSL 252

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 14141870  257 ppelfplALATKTLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSMPI 315
Cdd:MTH00193 253 -------LFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKI 304
NADHdh pfam00146
NADH dehydrogenase;
13-309 4.62e-107

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 314.41  E-value: 4.62e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870    13 LSYAIPILIAVAFLTLVERKVLSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPTTSSPLLFIMTPILALLLAITIW 92
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870    93 --IPLPLPFSLTDLNLGLLFLLSMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVIMLSGNYTLNT 170
Cdd:pfam00146  83 avIPFGPGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870   171 LAITQEPLYLIFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTAILFLn 250
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFL- 241

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 14141870   251 psSLNLPPELFPLALATK--TLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLW 309
Cdd:pfam00146 242 --GGWLGPFPLPGLLWFLlkVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 17-312 1.48e-104

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 308.12  E-value: 1.48e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870   17 IPILIAVAFLTLVERKVLSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPTTSSPLLFIMTPILALLLAITIWIPLP 96
Cdd:MTH00225  12 ICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLILSLILWSLYP 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870   97 LPFSLTDLNLGLLFLLSMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVIMLSGNYTLNTLAITQE 176
Cdd:MTH00225  92 SMFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLTYNLFDFSYNQK 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870  177 PLYLIFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTAILFLNPSSLnl 256
Cdd:MTH00225 172 YFWFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTSILFFGGFFV-- 249

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 14141870  257 ppeLFPLALATKTLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTS 312
Cdd:MTH00225 250 ---TIDLFLILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVLI 302
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 13-322 6.18e-101

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 299.72  E-value: 6.18e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870   13 LSYAIPILIAVAFLTLVERKVLSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPTTSSPLLFIMTPILALLLAITIW 92
Cdd:MTH00054   9 LAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLTLAFIAW 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870   93 --IPLPLPFSLTDLNLGLLFLLSMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVIMLSGNYTLNT 170
Cdd:MTH00054  89 gvIPYGEGVVLSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVGSLNLTE 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870  171 LAITQEPLYLIFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTAILFLN 250
Cdd:MTH00054 169 IVLAQKNIWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMSTFGVILFLG 248

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 14141870  251 PSSLNLPPELFPLALATKTLLLSS---GFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSMPISYAGLPP 322
Cdd:MTH00054 249 GWLVISGPTSYFSNFVWFGIKIALiifLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVSGILIGFNALPP 323
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 1-322 7.43e-100

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 297.03  E-value: 7.43e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870    1 MQSSALNHLTMSLSYAIPILIAVAFLTLVERKVLSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPTTSSPLLFIMT 80
Cdd:MTH00216   1 MMVFIIFYLIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870   81 PILALLLAITIWIPLPLP--FSLTDLNLGLLFLLSMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLS 158
Cdd:MTH00216  81 PVLSFTLALIVWGVIPYErgVLISDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIIS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870  159 VIMLSGNYTLNTLAITQEP-LYLIFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANI 237
Cdd:MTH00216 161 VLLCVGSLSITEIVLAQNNgIWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHI 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870  238 MLMNTLTAILFLNpSSLNLPPELF--PLALATKTLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSMPI 315
Cdd:MTH00216 241 ILMSCLTTILFLG-GWLSPIKYFKggAGWFGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIFVASVLF 319


                 ....*..
gi 14141870  316 SYAGLPP 322
Cdd:MTH00216 320 GFNGPPP 326
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 17-305 1.36e-95

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 286.26  E-value: 1.36e-95
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870  17 IPILIAVAFLTLVERKVLSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPTTSSPLLFIMTPILALLLAITIWIPLP 96
Cdd:COG1005  20 VFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPALLAFAVIP 99

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870  97 L--PFSLTDLNLGLLFLLSMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVIMLSGnyTLNTLAIT 174
Cdd:COG1005 100 FgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAG--SLNLSEIV 177

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870 175 ---QEPLYLIFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTAILFL-- 249
Cdd:COG1005 178 eaqAGGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSALATTLFLgg 257

                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 14141870 250 ------NPSSLNLPPELFplaLATKTLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLA 305
Cdd:COG1005 258 wlgpfpILPLGGLPGILW---FLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLV 316
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
17-309 2.19e-91

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 275.15  E-value: 2.19e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870   17 IPILIAVAFLTLVERKVLSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPTTSSPLLFIMTPILALLLAITIWIPLP 96
Cdd:PRK06076  21 VVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVIAFIPAFLAWAVIP 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870   97 L--PFSLTDLNLGLLFLLSMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVIMLSGnyTLNTLAI- 173
Cdd:PRK06076 101 FgpELVIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAG--SLNLSDIv 178

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870  174 -TQEPLYLIFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTAILFLN-- 250
Cdd:PRK06076 179 eAQFLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMILVSALITTLFLGgw 258

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 14141870  251 ----PSSLNLPPELFPLALATKTLLLssgFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLW 309
Cdd:PRK06076 259 lppfPLGGGIPGAIWFVLKVAFFVFL---FIWLRATLPRYRYDQLMRLGWKVLLPLSLVNLLL 318
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 17-322 1.85e-85

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 260.72  E-value: 1.85e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870   17 IPILIAVAFLTLVERKVLSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPTTSSPLLFIMTPILALLLAITIW--IP 94
Cdd:MTH00029  18 VPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPIISFTLAILAWaiVT 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870   95 LPLPFSLTDLNLGLLFLLSMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVIMLSGNYTLNTLAIT 174
Cdd:MTH00029  98 MDQGVFLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISVILCVGSLNISEIVIS 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870  175 QEPLYLIFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTAILFLNP--S 252
Cdd:MTH00029 178 QRSVWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIILMSCMMTIFFLGGwlS 257

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870  253 SLNLPPELFPLALATKTLLLSSG--------------FLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSMPISYA 318
Cdd:MTH00029 258 PLDGIPTPPEAFSIFEQIASSKSsfwfftkssifilfFIWSRASFPRIRYDQLMKLLWKTYLPLSLGLVILTAGILIGFN 337


                 ....
gi 14141870  319 GLPP 322
Cdd:MTH00029 338 GVPP 341
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 11-315 6.83e-79

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 242.76  E-value: 6.83e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870   11 MSLSYAIPILI-------AVAFLTLVERKVLSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPTTSSPLLFIMTPIL 83
Cdd:MTH00010   1 MNISFFISILLsyvmallAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMM 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870   84 ALLLAITIWIPLPLPFSLTDLNLGLLFLLSMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVIMLS 163
Cdd:MTH00010  81 SLILALLLWSLYPHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870  164 GNYTLNTLAITQEPLYLIFsTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTL 243
Cdd:MTH00010 161 QTFSFSKIIMSQYSWILLM-IIPLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLF 239

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 14141870  244 TAILFLNPSslnlPPELF-PLALATKTLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLwhTSMPI 315
Cdd:MTH00010 240 TSVFFTSFI----PSIFIsDLMLILKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTSLM--ISIPI 306
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 17-304 8.64e-65

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 205.90  E-value: 8.64e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870   17 IPILIAVAFLTLVERKVLSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPTTSSPLLFIMTPILALLLAITIWIPLP 96
Cdd:MTH00090   7 IFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYLEWFVLP 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870   97 LPFSLTDLNLGLLFLLSMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVIMLSGNYTLNTlaitqe 176
Cdd:MTH00090  87 YFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFVS------ 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870  177 plYLIFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTAILFLNPSSLNL 256
Cdd:MTH00090 161 --SFSLSLFVIYLPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFKFSFLML 238

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*...
gi 14141870  257 ppelfplalatktLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTL 304
Cdd:MTH00090 239 -------------FLIFSLLIFIRSSYPRFRYDMMMSMFWFKFLPLSL 273
ndhA CHL00032
NADH dehydrogenase subunit 1
 13-312 2.66e-45

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 157.81  E-value: 2.66e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870   13 LSYAIPILIAVAFLTLVERKVLSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPTTSSPLLFIMTPILA---LLLAI 89
Cdd:CHL00032  34 LTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPSIAvisILLSY 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870   90 TIwIPLPLPFSLTDLNLGLLFLLSMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVIMLSGnyTLN 169
Cdd:CHL00032 114 LV-IPFGYHLVLADLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSN--SLS 190

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870  170 TLAITQEPLYLIFSTWPL------AMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTL 243
Cdd:CHL00032 191 TVDIVEAQSKYGFWGWNLwrqpigFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLF 270

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870  244 TAILFLNPSSLNLP----PELFPLALATKTLLLSSGFLWV--------------RASYPRFRYDQLMHLLWKNFLPLTLA 305
Cdd:CHL00032 271 VTVLYLGGWNLSIPyifiPELFEINKTGGVFGTTIGIFITlaktylflfisittRWTLPRLRMDQLLNLGWKFLLPISLG 350


                 ....*..
gi 14141870  306 LCLWHTS 312
Cdd:CHL00032 351 NLLLTTS 357
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 19-304 4.29e-45

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 155.08  E-value: 4.29e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870   19 ILIAVAFLTLVERKVLSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPTTSSPLLFIMTPILALLLAITIWIPLPLP 98
Cdd:MTH00058  14 ILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLVLLVVFYCFIYGSY 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870   99 FSLTDLNLGLLFLLSMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVIMLSGNYTLNTlaITQEPL 178
Cdd:MTH00058  94 YSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGSYSLVD--FYYSGW 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870  179 YLIFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTAILFLNPS--SLNL 256
Cdd:MTH00058 172 LSVLLFPLIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGSVLFFGGGfvSIML 251

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*...
gi 14141870  257 PPELFplalatktlllssGFLWVRASYPRFRYDQLMHLLWKNFLPLTL 304
Cdd:MTH00058 252 LFHLL-------------FFMWARATLPRVRYDYFVNFFWEYCLVLLI 286
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
6-309 2.75e-28

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 111.04  E-value: 2.75e-28
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870   6 LNHLTMSLSYAIPILIAVAFLTLVERKVLSYMQARKGPnivgpfGLLQPVADGVKLFIKEPIRPTTSSPLlFIMTPILAL 85
Cdd:COG0650   1 MMLILLALLQLLLALLLAPLLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVPETASWL-FRAAPYVAL 73

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870  86 --LLAITIWIPLPLPFSLTDLNLGLLFLLSMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVIMLS 163
Cdd:COG0650  74 aaMLLAALLVPVLTTGPPLSFSGDLIVLVYLLALARFFLALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALALLA 153

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14141870 164 GN---YTLNTLAITQEPLYLIFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLM 240
Cdd:COG0650 154 GStslSDIVAYQAAHGPLLLSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKLFVL 233

                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 14141870 241 NTLTAILFLnPSSLNLPPELFPLALATKTLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLW 309
Cdd:COG0650 234 LSLFVNLFL-PWGIALTLLLALLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLALLLA 301
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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