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Conserved domains on  [gi|1409814732|gb|RAS58816|]
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type III secretion protein T [Burkholderia cenocepacia]

Protein Classification

EscT/YscT/HrcT family type III secretion system export apparatus protein( domain architecture ID 10008835)

SpaR/YscT/HrcT family type III secretion system export apparatus protein similar to Yersinia pestis Yop proteins translocation protein T, which is a component of the yop secretion machinery

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
EscT COG4791
Type III secretory pathway, EscT/YscT component [Intracellular trafficking, secretion, and ...
18-258 1.76e-58

Type III secretory pathway, EscT/YscT component [Intracellular trafficking, secretion, and vesicular transport];


:

Pssm-ID: 443820  Cd Length: 255  Bit Score: 186.60  E-value: 1.76e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1409814732  18 LLYVMPRLLPVMLIVPVFNEQIITGLVRNGIAVVIAAFVAPTI-DAAQVAALPFLMWCLLVAKEAMVGMLLAGAFSAVLF 96
Cdd:COG4791    14 LALAMARLLPVFLLLPFLSGQVLPGLVRNGVALALALPLAPGLpAALLLPPLSPLALLGLLLKELLIGLLLGFLAAIPFW 93
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1409814732  97 AIQGVGYLIDFQTGSGSAAFFDPMGGHEGGPTSGFLNFVAIALFVTAGGLQVLVQLFAQSYAWWPIGSLGPDFSSMLQTF 176
Cdd:COG4791    94 AAEAAGELIDNQRGATMASSINPASGSQSSPLGILLSQFLIALFFAGGGFLLLLGALYDSYRLWPLGSFLPALSAQGAAF 173
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1409814732 177 IVRQTDTIFEWMVKLAAPVTIVLVLVELGVGLVGRAVPQLNIFVFSQPLKSALAMLMMILFLPVVYASLHALLSPDSGLM 256
Cdd:COG4791   174 FLALLDQLMTLALLLAAPVLLALLLVDLALGLLSRFAPQLNVFFLSMPIKSLVALLLLLLYLPVLLEQVLAELLSLEDLL 253

                  ..
gi 1409814732 257 AL 258
Cdd:COG4791   254 PR 255
 
Name Accession Description Interval E-value
EscT COG4791
Type III secretory pathway, EscT/YscT component [Intracellular trafficking, secretion, and ...
18-258 1.76e-58

Type III secretory pathway, EscT/YscT component [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443820  Cd Length: 255  Bit Score: 186.60  E-value: 1.76e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1409814732  18 LLYVMPRLLPVMLIVPVFNEQIITGLVRNGIAVVIAAFVAPTI-DAAQVAALPFLMWCLLVAKEAMVGMLLAGAFSAVLF 96
Cdd:COG4791    14 LALAMARLLPVFLLLPFLSGQVLPGLVRNGVALALALPLAPGLpAALLLPPLSPLALLGLLLKELLIGLLLGFLAAIPFW 93
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1409814732  97 AIQGVGYLIDFQTGSGSAAFFDPMGGHEGGPTSGFLNFVAIALFVTAGGLQVLVQLFAQSYAWWPIGSLGPDFSSMLQTF 176
Cdd:COG4791    94 AAEAAGELIDNQRGATMASSINPASGSQSSPLGILLSQFLIALFFAGGGFLLLLGALYDSYRLWPLGSFLPALSAQGAAF 173
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1409814732 177 IVRQTDTIFEWMVKLAAPVTIVLVLVELGVGLVGRAVPQLNIFVFSQPLKSALAMLMMILFLPVVYASLHALLSPDSGLM 256
Cdd:COG4791   174 FLALLDQLMTLALLLAAPVLLALLLVDLALGLLSRFAPQLNVFFLSMPIKSLVALLLLLLYLPVLLEQVLAELLSLEDLL 253

                  ..
gi 1409814732 257 AL 258
Cdd:COG4791   254 PR 255
fliR_like_III TIGR01401
type III secretion protein SpaR/YscT/HrcT; This model represents members of bacterial type III ...
18-244 1.12e-46

type III secretion protein SpaR/YscT/HrcT; This model represents members of bacterial type III secretion systems homologous to the flagellar biosynthetic protein FliR (TIGRFAMs:TIGR01400). [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 130468  Cd Length: 253  Bit Score: 156.28  E-value: 1.12e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1409814732  18 LLYVMPRLLPVMLIVPVFNEQIITGLVRNGIAVVIAAFVAPTIDAAQVAALPFLMWCLLVAKEAMVGMLLAGAFSAVLFA 97
Cdd:TIGR01401  11 LALAFARILPMFLLLPFFASGSLPGLIRNGVIVVLALPIAPHISTALLALDITFSLAGLLLKEVIIGLLLGFLLALPFWI 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1409814732  98 IQGVGYLIDFQTGSGSAAFFDPMGGHEGGPTSGFLNFVAIALFVTAGGLQVLVQLFAQSYAWWPIGSLGpDFSSMLQTFI 177
Cdd:TIGR01401  91 FEAAGFLIDNQRGATLSSIFNPATGVDTSPLGVLFNQFLIVIFLTSGGMEFLLGALYESYRLWPLTAFL-NFSAQGLSFV 169
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1409814732 178 VRQTDTIFEWMVKLAAPVTIVLVLVELGVGLVGRAVPQLNIFVFSQPLKSALAMLMMILFLPVVYAS 244
Cdd:TIGR01401 170 LSQLDQMMALALLLAAPVIIVLFLIELALGLLSRFAPQLNVFILSLPIKSLLALLILLLYFATLLEH 236
Bac_export_1 pfam01311
Bacterial export proteins, family 1; This family includes the following members; FliR, MopE, ...
18-241 3.54e-42

Bacterial export proteins, family 1; This family includes the following members; FliR, MopE, SsaT, YopT, Hrp, HrcT and SpaR All of these members export proteins, that do not possess signal peptides, through the membrane. Although the proteins that these exporters move may be different, the exporters are thought to function in similar ways.


Pssm-ID: 460156  Cd Length: 227  Bit Score: 143.77  E-value: 3.54e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1409814732  18 LLYVMPRLLPVMLIVPVFNEQIITGLVRNGIAVVIAAFVAPTIDAAQVAALPFlMWCLLVAKEAMVGMLLAGAFSAVLFA 97
Cdd:pfam01311   4 FLLVFARILALFMLAPVFGSRSIPVRVRLGLALALALILFPLLPPVPPPSAPL-SLLLLVLKEVLIGLALGFLARLVFAA 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1409814732  98 IQGVGYLIDFQTGSGSAAFFDPMGGHEGGPTSGFLNFVAIALFVTAGGLQVLVQLFAQSYAWWPIGSLGPDFSsmlqTFI 177
Cdd:pfam01311  83 VQFAGQIIDMQMGLSMASVFDPTSGAQSPVLGQFLNLLALLLFLALGGHLLLLRALVDSFELIPVGLPGGALA----ELL 158
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1409814732 178 VRQTDTIFEWMVKLAAPVTIVLVLVELGVGLVGRAVPQLNIFVFSQPLKSALAMLMMILFLPVV 241
Cdd:pfam01311 159 VKLFGDMFALALQLALPVIAALLLVNLALGLLSRAAPQLNVFSVGFPLKILVGLLLLALTLPVL 222
PRK15332 PRK15332
SpaR/YscT/HrcT type III secretion system export apparatus protein;
8-256 3.81e-25

SpaR/YscT/HrcT type III secretion system export apparatus protein;


Pssm-ID: 185232  Cd Length: 263  Bit Score: 100.31  E-value: 3.81e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1409814732   8 FNDVAGMLRPLLYVMPRLLPVMLIVPVFNEQIITGLVRNGIAVVIAAFVAPTidaAQVAALPFLMWCL--LVAKEAMVGM 85
Cdd:PRK15332    6 YFEIHHLVASAALGFARVAPIFFFLPFLNSGVLSGAPRNAIIILVALGVWPH---ALNEAPPFLSVAMipLVLQEAAVGV 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1409814732  86 LLAGAFSAVLFAIQGVGYLIDFQTGSGSAAFFDPMGGHEGGPTSGFLNFVAIALFVTAGGLQVLVQLFAQSYAWW-PIGS 164
Cdd:PRK15332   83 MLGCLLSWPFWVMHALGCIIDNQRGATLSSSIDPANGIDTSEMANFLNMFAAVVYLQNGGLVTMVDVLNKSYQLCdPMNE 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1409814732 165 LGPDFSSMLqTFIvrqtDTIFEWMVKLAAPVTIVLVLVELGVGLVGRAVPQLNIFVFSQPLKSALAMLMMILFLPVVYAS 244
Cdd:PRK15332  163 CTPSLPPLL-TFI----NQVAQNALVLASPVVLVLLLSEVFLGLLSRFAPQMNAFAISLTVKSGIAVLIMLLYFSPVLPD 237
                         250
                  ....*....|..
gi 1409814732 245 LHALLSPDSGLM 256
Cdd:PRK15332  238 NVLRLSFQATGL 249
 
Name Accession Description Interval E-value
EscT COG4791
Type III secretory pathway, EscT/YscT component [Intracellular trafficking, secretion, and ...
18-258 1.76e-58

Type III secretory pathway, EscT/YscT component [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443820  Cd Length: 255  Bit Score: 186.60  E-value: 1.76e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1409814732  18 LLYVMPRLLPVMLIVPVFNEQIITGLVRNGIAVVIAAFVAPTI-DAAQVAALPFLMWCLLVAKEAMVGMLLAGAFSAVLF 96
Cdd:COG4791    14 LALAMARLLPVFLLLPFLSGQVLPGLVRNGVALALALPLAPGLpAALLLPPLSPLALLGLLLKELLIGLLLGFLAAIPFW 93
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1409814732  97 AIQGVGYLIDFQTGSGSAAFFDPMGGHEGGPTSGFLNFVAIALFVTAGGLQVLVQLFAQSYAWWPIGSLGPDFSSMLQTF 176
Cdd:COG4791    94 AAEAAGELIDNQRGATMASSINPASGSQSSPLGILLSQFLIALFFAGGGFLLLLGALYDSYRLWPLGSFLPALSAQGAAF 173
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1409814732 177 IVRQTDTIFEWMVKLAAPVTIVLVLVELGVGLVGRAVPQLNIFVFSQPLKSALAMLMMILFLPVVYASLHALLSPDSGLM 256
Cdd:COG4791   174 FLALLDQLMTLALLLAAPVLLALLLVDLALGLLSRFAPQLNVFFLSMPIKSLVALLLLLLYLPVLLEQVLAELLSLEDLL 253

                  ..
gi 1409814732 257 AL 258
Cdd:COG4791   254 PR 255
fliR_like_III TIGR01401
type III secretion protein SpaR/YscT/HrcT; This model represents members of bacterial type III ...
18-244 1.12e-46

type III secretion protein SpaR/YscT/HrcT; This model represents members of bacterial type III secretion systems homologous to the flagellar biosynthetic protein FliR (TIGRFAMs:TIGR01400). [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 130468  Cd Length: 253  Bit Score: 156.28  E-value: 1.12e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1409814732  18 LLYVMPRLLPVMLIVPVFNEQIITGLVRNGIAVVIAAFVAPTIDAAQVAALPFLMWCLLVAKEAMVGMLLAGAFSAVLFA 97
Cdd:TIGR01401  11 LALAFARILPMFLLLPFFASGSLPGLIRNGVIVVLALPIAPHISTALLALDITFSLAGLLLKEVIIGLLLGFLLALPFWI 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1409814732  98 IQGVGYLIDFQTGSGSAAFFDPMGGHEGGPTSGFLNFVAIALFVTAGGLQVLVQLFAQSYAWWPIGSLGpDFSSMLQTFI 177
Cdd:TIGR01401  91 FEAAGFLIDNQRGATLSSIFNPATGVDTSPLGVLFNQFLIVIFLTSGGMEFLLGALYESYRLWPLTAFL-NFSAQGLSFV 169
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1409814732 178 VRQTDTIFEWMVKLAAPVTIVLVLVELGVGLVGRAVPQLNIFVFSQPLKSALAMLMMILFLPVVYAS 244
Cdd:TIGR01401 170 LSQLDQMMALALLLAAPVIIVLFLIELALGLLSRFAPQLNVFILSLPIKSLLALLILLLYFATLLEH 236
Bac_export_1 pfam01311
Bacterial export proteins, family 1; This family includes the following members; FliR, MopE, ...
18-241 3.54e-42

Bacterial export proteins, family 1; This family includes the following members; FliR, MopE, SsaT, YopT, Hrp, HrcT and SpaR All of these members export proteins, that do not possess signal peptides, through the membrane. Although the proteins that these exporters move may be different, the exporters are thought to function in similar ways.


Pssm-ID: 460156  Cd Length: 227  Bit Score: 143.77  E-value: 3.54e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1409814732  18 LLYVMPRLLPVMLIVPVFNEQIITGLVRNGIAVVIAAFVAPTIDAAQVAALPFlMWCLLVAKEAMVGMLLAGAFSAVLFA 97
Cdd:pfam01311   4 FLLVFARILALFMLAPVFGSRSIPVRVRLGLALALALILFPLLPPVPPPSAPL-SLLLLVLKEVLIGLALGFLARLVFAA 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1409814732  98 IQGVGYLIDFQTGSGSAAFFDPMGGHEGGPTSGFLNFVAIALFVTAGGLQVLVQLFAQSYAWWPIGSLGPDFSsmlqTFI 177
Cdd:pfam01311  83 VQFAGQIIDMQMGLSMASVFDPTSGAQSPVLGQFLNLLALLLFLALGGHLLLLRALVDSFELIPVGLPGGALA----ELL 158
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1409814732 178 VRQTDTIFEWMVKLAAPVTIVLVLVELGVGLVGRAVPQLNIFVFSQPLKSALAMLMMILFLPVV 241
Cdd:pfam01311 159 VKLFGDMFALALQLALPVIAALLLVNLALGLLSRAAPQLNVFSVGFPLKILVGLLLLALTLPVL 222
FliR COG1684
Flagellar biosynthesis protein FliR [Cell motility];
13-249 3.30e-35

Flagellar biosynthesis protein FliR [Cell motility];


Pssm-ID: 441290  Cd Length: 253  Bit Score: 126.42  E-value: 3.30e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1409814732  13 GMLRPLLYVMPRLLPVMLIVPVFNEQIITGLVRNGIAVVIAAFVAPTIDAAQVAALPF-LMWCLLVAKEAMVGMLLAGAF 91
Cdd:COG1684     3 AWLAAFLLVFVRIGAFLMVAPVFGSRSVPVRVRLGLALALALLLAPVLPPVLPPVPLSsLGLLLLLLQELLIGLALGFVA 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1409814732  92 SAVLFAIQGVGYLIDFQTGSGSAAFFDPMGGHEGGPTSGFLNFVAIALFVTAGGLQVLVQLFAQSYAWWPIGSLGPDFSS 171
Cdd:COG1684    83 RLVFAALQLAGQIIGMQMGLSFASVFDPQSGVQSPVLGQFLYLLALLLFLALDGHLLLIRALVESFELLPVGGAPLSGDA 162
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1409814732 172 MlqTFIVRQTDTIFEWMVKLAAPVTIVLVLVELGVGLVGRAVPQLNIFVFSQPLKSALAMLMMILFLPVVYASLHALL 249
Cdd:COG1684   163 L--ELLVRLFGQMFALALQLALPVIAALLLVNLALGLLNRAAPQLNVFFVGFPLKILVGLLLLALTLPLLLPVFERLF 238
PRK15332 PRK15332
SpaR/YscT/HrcT type III secretion system export apparatus protein;
8-256 3.81e-25

SpaR/YscT/HrcT type III secretion system export apparatus protein;


Pssm-ID: 185232  Cd Length: 263  Bit Score: 100.31  E-value: 3.81e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1409814732   8 FNDVAGMLRPLLYVMPRLLPVMLIVPVFNEQIITGLVRNGIAVVIAAFVAPTidaAQVAALPFLMWCL--LVAKEAMVGM 85
Cdd:PRK15332    6 YFEIHHLVASAALGFARVAPIFFFLPFLNSGVLSGAPRNAIIILVALGVWPH---ALNEAPPFLSVAMipLVLQEAAVGV 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1409814732  86 LLAGAFSAVLFAIQGVGYLIDFQTGSGSAAFFDPMGGHEGGPTSGFLNFVAIALFVTAGGLQVLVQLFAQSYAWW-PIGS 164
Cdd:PRK15332   83 MLGCLLSWPFWVMHALGCIIDNQRGATLSSSIDPANGIDTSEMANFLNMFAAVVYLQNGGLVTMVDVLNKSYQLCdPMNE 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1409814732 165 LGPDFSSMLqTFIvrqtDTIFEWMVKLAAPVTIVLVLVELGVGLVGRAVPQLNIFVFSQPLKSALAMLMMILFLPVVYAS 244
Cdd:PRK15332  163 CTPSLPPLL-TFI----NQVAQNALVLASPVVLVLLLSEVFLGLLSRFAPQMNAFAISLTVKSGIAVLIMLLYFSPVLPD 237
                         250
                  ....*....|..
gi 1409814732 245 LHALLSPDSGLM 256
Cdd:PRK15332  238 NVLRLSFQATGL 249
fliR PRK05701
flagellar type III secretion system protein FliR;
24-240 7.91e-25

flagellar type III secretion system protein FliR;


Pssm-ID: 235568  Cd Length: 242  Bit Score: 99.07  E-value: 7.91e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1409814732  24 RLLPVMLIVPVFNEQIITGLVRNGIAVVIAAFVAPTIDAAQVAALPFLMWcLLVAKEAMVGMLLAGAFSAVLFAIQGVGY 103
Cdd:PRK05701   14 RIGALLMTMPGFSERSIPARVKLGLALALTFAVAPLLPVPDVPLFSLDLL-LLVIQEILIGLALGLVAQILFAALQFAGQ 92
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1409814732 104 LIDFQTGSGSAAFFDPMGGHEGGPTSGFLNFVAIALFVTAGGLQVLVQLFAQSYAWWPIGSLGPDFSSMLqtFIVRQTDT 183
Cdd:PRK05701   93 IIDMQMGLSFASVVDPTSGQQSPLLGQFLTLLALLLFLALDGHHLLIRALVDSFETLPIGGFLLNGNAFL--LLAKALSA 170
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1409814732 184 IFEWMVKLAAPVTIVLVLVELGVGLVGRAVPQLNIFVFSQPLKSALAMLMMILFLPV 240
Cdd:PRK05701  171 MFLIGLQLALPIIVLLLLVNLALGLINRTAPQLNIFVIGFPLKITVGLLLLALILPA 227
fliR TIGR01400
flagellar biosynthetic protein FliR; This model recognizes the FliR protein of bacterial ...
21-242 3.29e-22

flagellar biosynthetic protein FliR; This model recognizes the FliR protein of bacterial flagellar biosynthesis. It distinguishes FliR from the homologous proteins bacterial type III protein secretion systems, known by names such as YopT, EscT, and HrcT. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 130467  Cd Length: 245  Bit Score: 91.90  E-value: 3.29e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1409814732  21 VMPRLLPVMLIVPVFNEQIITGLVRNGIAVVIAAFVAPTIDAA-QVAALPFLMWCLLVAKEAMVGMLLAGAFSAVLFAIQ 99
Cdd:TIGR01400   7 PFVRVGAFLMTMPFFSERLVPVRVRLYLALALTFIVLPFLPPSpPPVNLFSLFFVLLLLQEILIGLLIGFILQLLFAAFV 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1409814732 100 GVGYLIDFQTGSGSAAFFDPMGGHEGGPTSGFLNFVAIALFVTAGGLQVLVQLFAQSYAWWPIGSLGPdfSSMLQTFIVR 179
Cdd:TIGR01400  87 LAGEIISMQMGLGFASMVDPSSGEQTPILGQILYLLALLLFLALDGHHLLILGLVDSFKSLPVGSFFL--NGNFFELILK 164
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1409814732 180 QTDTIFEWMVKLAAPVTIVLVLVELGVGLVGRAVPQLNIFVFSQPLKSALAMLMMILFLPVVY 242
Cdd:TIGR01400 165 ALSDMFLLGLLLALPIIAALLLVNLVLGLVNRAAPQINIFSIGFPLKIALGLILLYLILPGMA 227
PRK12772 PRK12772
fused FliR family export protein/FlhB family type III secretion system protein;
18-241 1.16e-19

fused FliR family export protein/FlhB family type III secretion system protein;


Pssm-ID: 237199 [Multi-domain]  Cd Length: 609  Bit Score: 88.20  E-value: 1.16e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1409814732  18 LLYVMPRLLPVMLIVPVFNEQIITGLVRNGIAVVIAAFVAPTIDAAQVAAL----PFLMWCLlvaKEAMVGMLLAGAFSA 93
Cdd:PRK12772   10 LILIFLRIFSFFIMVPIFFPKGTPNIVKVSLALIIAYMLVPGIDYSSVNTInnstLLIFYCI---NEILTGLILGFITNL 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1409814732  94 VLFAIQGVGYLIDFQTGSGSAAFFDPMGGHEGGPTSGFLNFVAIALFVTAGGLQVLVQLFAQSYAWWPIGSLGPDFSSM- 172
Cdd:PRK12772   87 CFVCVRIAGSMMDLQVGFSMMTMFDPTSNSNTTLIERLLYWFSTVIFFIIDGHHMLIRALVESFNVIKIGKFFLNQESIm 166
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1409814732 173 --LQTFIvrqtdTIFEWMVKLAAPVTIVLVLVELGVGLVGRAVPQLNIFVFSQPLKSALAMLMMILFLPVV 241
Cdd:PRK12772  167 hvINVFI-----QYFYIGIKIAIPIVLIILITDLTLGLISRTVPQLNIMILGLPIKILVGLTAFVIALPLF 232
PRK15349 PRK15349
EscT/YscT/HrcT family type III secretion system export apparatus protein;
24-252 4.43e-14

EscT/YscT/HrcT family type III secretion system export apparatus protein;


Pssm-ID: 185247  Cd Length: 259  Bit Score: 69.98  E-value: 4.43e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1409814732  24 RLLPVMLIVPVFNE-QIITGLVRNGIAVVIAAFVAPTIDAAQVAAL--PFLMWCLLVAKEAMVGMLLAGAFSAVLFAIQG 100
Cdd:PRK15349   18 RPLSLSLLLPLLKSgSLGAALLRNGVLMSLTFPILPIIYQQKIMMHigKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDM 97
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1409814732 101 VGYLIDFQTGSGSAAFFDPMGGHEGGPTSGFLNFVAIALFVTAGGLQVLVQLFAQSYAWWPIGSLGPdFSSMLQTFIVRQ 180
Cdd:PRK15349   98 AGFLLDTLRGATMGTIFNSTIEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLL-FDRQFLKYIQAE 176
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1409814732 181 TDTIFEWMVKLAAPVTIVLVLVELGVGLVGRAVPQLNIFVFSQPLKSALAMLMMILFLPvvYASLHALLSPD 252
Cdd:PRK15349  177 WRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFP--YALHHYLVESD 246
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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