NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1408134714|gb|RAL25551|]
View 

hypothetical protein DL240_03705 [Lujinxingia litoralis]

Protein Classification

NADH-quinone oxidoreductase subunit J( domain architecture ID 10002877)

NADH-quinone oxidoreductase subunit J (NuoJ) is part of the membrane domain of complex I of the respiratory chain that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
NuoJ COG0839
NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Energy production and conversion]; NADH: ...
 2-245 4.99e-26

NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 6 (chain J) is part of the Pathway/BioSystem: NADH dehydrogenase


:

Pssm-ID: 440601 [Multi-domain]  Cd Length: 162  Bit Score: 99.42  E-value: 4.99e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408134714   2 FALGALVASLTVVVVRNPLYSALALIADFFFFAGLYVLLSAHFLAIVQVLVYGGAIMVLFLFIIMLLNLRDEELgENRFQ 81
Cdd:COG0839     8 FAALAVASALGVVTSRNPVHAALYLVLTFLSVAGLYLLLGAEFLAAVQVIVYVGAVMVLFLFVVMLLDLDKEEL-REGFR 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408134714  82 LHFVAAIGSGLAIFffagasilavvsnddvaqgreqyaqaveqvedGEKVALLTQSAIPGLAADINEEaleaayqaqlva 161
Cdd:COG0839    87 KYRPLAALVGLLLL--------------------------------AELAYVLLSTSWAAAPAAAAAA------------ 122

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408134714 162 weagqgnpaqgkyprfdssrgfelppalspaarnaevvpgrsglYGTFKPISVALVNRFVVPFELTAILLLAAIVGAMII 241
Cdd:COG0839   123 --------------------------------------------VGNTKALGELLFTDYLLPFELASVLLLVAMIGAIVL 158


                  ....
gi 1408134714 242 AKRR 245
Cdd:COG0839   159 ARRE 162
 
Name Accession Description Interval E-value
NuoJ COG0839
NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Energy production and conversion]; NADH: ...
 2-245 4.99e-26

NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 6 (chain J) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440601 [Multi-domain]  Cd Length: 162  Bit Score: 99.42  E-value: 4.99e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408134714   2 FALGALVASLTVVVVRNPLYSALALIADFFFFAGLYVLLSAHFLAIVQVLVYGGAIMVLFLFIIMLLNLRDEELgENRFQ 81
Cdd:COG0839     8 FAALAVASALGVVTSRNPVHAALYLVLTFLSVAGLYLLLGAEFLAAVQVIVYVGAVMVLFLFVVMLLDLDKEEL-REGFR 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408134714  82 LHFVAAIGSGLAIFffagasilavvsnddvaqgreqyaqaveqvedGEKVALLTQSAIPGLAADINEEaleaayqaqlva 161
Cdd:COG0839    87 KYRPLAALVGLLLL--------------------------------AELAYVLLSTSWAAAPAAAAAA------------ 122

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408134714 162 weagqgnpaqgkyprfdssrgfelppalspaarnaevvpgrsglYGTFKPISVALVNRFVVPFELTAILLLAAIVGAMII 241
Cdd:COG0839   123 --------------------------------------------VGNTKALGELLFTDYLLPFELASVLLLVAMIGAIVL 158


                  ....
gi 1408134714 242 AKRR 245
Cdd:COG0839   159 ARRE 162
PRK06638 PRK06638
NADH-quinone oxidoreductase subunit J;
2-122 1.28e-24

NADH-quinone oxidoreductase subunit J;


Pssm-ID: 235844 [Multi-domain]  Cd Length: 198  Bit Score: 96.83  E-value: 1.28e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408134714   2 FALGALVASLTVVVVRNPLYSALALIADFFFFAGLYVLLSAHFLAIVQVLVYGGAIMVLFLFIIMLLNLR-DEELGENRF 80
Cdd:PRK06638   11 LALLAVLAALGVVTSRNPVHSALFLILTFLSIAGLYFLLGAEFLGVVQIIVYVGAVMVLFLFVVMMLDVDfSEREQLREW 90

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1408134714  81 ---QLHFVAAIGSGLAIFFFAGASILAVVSNDDVAQGREQYAQAV 122
Cdd:PRK06638   91 lpgGVLIGLVILLGLLLLLIVGAIIAASGVNAQGIAAGEGNTKAI 135
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
11-118 8.60e-21

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 84.86  E-value: 8.60e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408134714  11 LTVVVVRNPLYSALALIADFFFFAGLYVLLSAHFLAIVQVLVYGGAIMVLFLFIIMLlnLRDEELGENRFQLHFVAAIGS 90
Cdd:pfam00499   1 LGVVTSRNPVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIML--LLAEEEPEKLRSGLPLAALLL 78

                          90       100
                  ....*....|....*....|....*...
gi 1408134714  91 GLAIFFFAGASILAVVSNDDVAQGREQY 118
Cdd:pfam00499  79 GLLLLALLLLVLLSASLTPAAAAAAPDV 106
 
Name Accession Description Interval E-value
NuoJ COG0839
NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Energy production and conversion]; NADH: ...
 2-245 4.99e-26

NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 6 (chain J) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440601 [Multi-domain]  Cd Length: 162  Bit Score: 99.42  E-value: 4.99e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408134714   2 FALGALVASLTVVVVRNPLYSALALIADFFFFAGLYVLLSAHFLAIVQVLVYGGAIMVLFLFIIMLLNLRDEELgENRFQ 81
Cdd:COG0839     8 FAALAVASALGVVTSRNPVHAALYLVLTFLSVAGLYLLLGAEFLAAVQVIVYVGAVMVLFLFVVMLLDLDKEEL-REGFR 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408134714  82 LHFVAAIGSGLAIFffagasilavvsnddvaqgreqyaqaveqvedGEKVALLTQSAIPGLAADINEEaleaayqaqlva 161
Cdd:COG0839    87 KYRPLAALVGLLLL--------------------------------AELAYVLLSTSWAAAPAAAAAA------------ 122

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408134714 162 weagqgnpaqgkyprfdssrgfelppalspaarnaevvpgrsglYGTFKPISVALVNRFVVPFELTAILLLAAIVGAMII 241
Cdd:COG0839   123 --------------------------------------------VGNTKALGELLFTDYLLPFELASVLLLVAMIGAIVL 158


                  ....
gi 1408134714 242 AKRR 245
Cdd:COG0839   159 ARRE 162
PRK06638 PRK06638
NADH-quinone oxidoreductase subunit J;
2-122 1.28e-24

NADH-quinone oxidoreductase subunit J;


Pssm-ID: 235844 [Multi-domain]  Cd Length: 198  Bit Score: 96.83  E-value: 1.28e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408134714   2 FALGALVASLTVVVVRNPLYSALALIADFFFFAGLYVLLSAHFLAIVQVLVYGGAIMVLFLFIIMLLNLR-DEELGENRF 80
Cdd:PRK06638   11 LALLAVLAALGVVTSRNPVHSALFLILTFLSIAGLYFLLGAEFLGVVQIIVYVGAVMVLFLFVVMMLDVDfSEREQLREW 90

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1408134714  81 ---QLHFVAAIGSGLAIFFFAGASILAVVSNDDVAQGREQYAQAV 122
Cdd:PRK06638   91 lpgGVLIGLVILLGLLLLLIVGAIIAASGVNAQGIAAGEGNTKAI 135
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
11-118 8.60e-21

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 84.86  E-value: 8.60e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408134714  11 LTVVVVRNPLYSALALIADFFFFAGLYVLLSAHFLAIVQVLVYGGAIMVLFLFIIMLlnLRDEELGENRFQLHFVAAIGS 90
Cdd:pfam00499   1 LGVVTSRNPVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIML--LLAEEEPEKLRSGLPLAALLL 78

                          90       100
                  ....*....|....*....|....*...
gi 1408134714  91 GLAIFFFAGASILAVVSNDDVAQGREQY 118
Cdd:pfam00499  79 GLLLLALLLLVLLSASLTPAAAAAAPDV 106
ND6 MTH00057
NADH dehydrogenase subunit 6; Provisional
 1-79 2.68e-15

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177129 [Multi-domain]  Cd Length: 186  Bit Score: 71.57  E-value: 2.68e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1408134714   1 MFALGALVASLTVVVVRNPLYSALALIADFFFFAGLYVLLSAHFLAIVQVLVYGGAIMVLFLFIIMLLNLRDEELGENR 79
Cdd:MTH00057    7 LFALGVIISGIMVISALNPVHSVLWLIVAFTSASALFILLEVEFIALIFLIVYVGAIAILFLFVIMMLNLTDLEGGGDM 85
ndhG CHL00016
NADH dehydrogenase subunit 6
 2-69 7.30e-14

NADH dehydrogenase subunit 6


Pssm-ID: 214335 [Multi-domain]  Cd Length: 182  Bit Score: 67.62  E-value: 7.30e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1408134714   2 FALGALVASLTVVVVRNPLYSALALIADFFFFAGLYVLLSAHFLAIVQVLVYGGAIMVLFLFIIMLLN 69
Cdd:CHL00016   15 LGSGLILGSLGVVLLTNPIYSAFSLGLVLVCISLFYILLNADFVAAAQLLIYVGAINVLIIFAVMFMN 82
ND6 MTH00021
NADH dehydrogenase subunit 6; Validated
 1-108 4.02e-13

NADH dehydrogenase subunit 6; Validated


Pssm-ID: 214401 [Multi-domain]  Cd Length: 188  Bit Score: 65.90  E-value: 4.02e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408134714   1 MFALGALVASLTVVVVRNPLYSALALIADFFFFAGLYVLLSAHFLAIVQVLVYGGAIMVLFLFIIMLLNLRD--EELGEN 78
Cdd:MTH00021    1 FFSLGIIGSGIMVISALNPVHSIFWLVVVFVNSAVFFILLGLDFLALMFLIIYVGAIAILFLFVIMLLNLTDfpPAFGGE 80

                          90       100       110
                  ....*....|....*....|....*....|
gi 1408134714  79 RFQLHFVAAIGSGLAIFFFAGASILAVVSN 108
Cdd:MTH00021   81 ADMTNYIPIGLIIGTLFFSEIASSWLIIGG 110
PRK06433 PRK06433
NADH dehydrogenase subunit J; Provisional
 1-67 6.75e-12

NADH dehydrogenase subunit J; Provisional


Pssm-ID: 180562 [Multi-domain]  Cd Length: 88  Bit Score: 60.00  E-value: 6.75e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1408134714   1 MFALGALVASLTVVVVRNPLYSALALIADFFFFAGLYVLLSAHFLAIVQVLVYGGAIMVLFLFIIML 67
Cdd:PRK06433   10 LFALVTVAFSLGVVLSRDVWHSALYLGVALFSVAVLYVMLNAEFLAAVQVLVYVGAVLILITFAVML 76
ND6 MTH00213
NADH dehydrogenase subunit 6; Provisional
 9-68 4.17e-05

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177256 [Multi-domain]  Cd Length: 239  Bit Score: 43.35  E-value: 4.17e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408134714   9 ASLTVVVVRNPLYSALALIADFFFFAGLYVLLSAHFLAIVQVLVYGGAIMVLFLFIIMLL 68
Cdd:MTH00213   13 SAVTPTYSHNFLASVFWLILTFIGSSGLFIVLGMEFLGLIFLIVYVGAICIIFLFVIMMI 72
ND6 MTH00214
NADH dehydrogenase subunit 6; Provisional
 1-97 2.66e-04

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214461  Cd Length: 168  Bit Score: 40.36  E-value: 2.66e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408134714   1 MFALGALVASLTVVVVRNPLYSALALIADFFFFAGLYVLLSAHFLAIVQVLVYGGAIMVLFLFIIMLLNLRDEELGENRF 80
Cdd:MTH00214    7 LLMFGFLLGLMMVASSPSPYFGALGLVLLALLGCFLLLSHGNSFLGLILFLIYLGGMLVVFSYSAALAADPYPESWGGWS 86

                          90
                  ....*....|....*..
gi 1408134714  81 QLHFVAAIGSGLAIFFF 97
Cdd:MTH00214   87 VLLFFLFYLLGLGFVGF 103
ND6 MTH00045
NADH dehydrogenase subunit 6; Validated
 7-63 9.31e-03

NADH dehydrogenase subunit 6; Validated


Pssm-ID: 177120  Cd Length: 162  Bit Score: 35.65  E-value: 9.31e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1408134714   7 LVASLTVVVVRNPLYSALALIADFFFFAGLYVLLSAHFLAIVQVLVYGGAIMVLFLF 63
Cdd:MTH00045   11 LFGSTLVFYSLSPYYSALGLVLVSLSGCLLLSLLGLSFLALLLLLIYMGGMLVVFVY 67
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH