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Conserved domains on  [gi|1403624288|emb|SQI62535|]
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colanic acid exporter [Salmonella enterica subsp. diarizonae]

Protein Classification

lipopolysaccharide biosynthesis protein( domain architecture ID 11484734)

lipopolysaccharide biosynthesis protein similar to Escherichia coli WzxC, Sinorhizobium meliloti ExoT, and Bacillus subtilis TuaB

Graphical summary

 Zoom to residue level

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List of domain hits

Name Accession Description Interval E-value
PRK10459 PRK10459
MOP flippase family protein;
1-492 0e+00

MOP flippase family protein;


:

Pssm-ID: 236697 [Multi-domain]  Cd Length: 492  Bit Score: 682.14  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288   1 MNLRQKTISGAKWSAIATIVIIGLGLIQMTVLARIIDNHQFGLLTVSLVIIALADTISDFGIANSIIQRKTIGHLELTTL 80
Cdd:PRK10459    1 MSLREKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASIIQRQDISHLQLSTL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288  81 YWLNVGLGIVVFAVVFWLSDAIAHVLHNPDLAPLIKTLSLAFIVIPHGQQFRALMQKELEFNKIGMIETTSVLAGFTFTV 160
Cdd:PRK10459   81 YWLNVGLGIVVFVLVFLLSPLIADFYHNPELAPLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEISAVVAGFTFAV 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288 161 ISAHYWPLALTAILGYLVNSAVRTLLFGYFGRKIYRPGLHFSLVSVSTNLRFGAWLTADSIVNYINTNLSTLVLARILGA 240
Cdd:PRK10459  161 VSAFFWPGALAAILGYLVNSSVRTLLFGYFGRKIYRPALHFSLASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGA 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288 241 GVAGGYNLAYNVAVVPPMKLNPIITRVLFPAFAKIQDDTEKLRVNFYKLLSVVGIINFPALLGLMVVANNFVPLVFGEKW 320
Cdd:PRK10459  241 EVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKIQDDTEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEKW 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288 321 RSIIPILQLLCVVGLLRSVGNPIGSLLMAKARVDISFKFNVFKTFLFIPAILIGGHLAGAIGVTLGFLVVQIINTILSYF 400
Cdd:PRK10459  321 NSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFKTFLFIPAIVIGGQLAGLIGVALGFLLVQIINTILSYF 400
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288 401 VMIKPVLGSSYRQYILSLWLPFYLSLPTFITSYGAGKLVDGYLPLSGVFALQVMIGILSFILMIIFSRNALVMEIKKQLF 480
Cdd:PRK10459  401 LMIKPVIGLSYRQYILSIWKPFYLSLPMLIVSYGLGLLLKGHLALGMLLAVQVAAGVLAYLLMIVLSRHALVVEVKRQFC 480
                         490
                  ....*....|..
gi 1403624288 481 GSAKMKKLLRVG 492
Cdd:PRK10459  481 RSEKMKKLLRVG 492
 
Name Accession Description Interval E-value
PRK10459 PRK10459
MOP flippase family protein;
1-492 0e+00

MOP flippase family protein;


Pssm-ID: 236697 [Multi-domain]  Cd Length: 492  Bit Score: 682.14  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288   1 MNLRQKTISGAKWSAIATIVIIGLGLIQMTVLARIIDNHQFGLLTVSLVIIALADTISDFGIANSIIQRKTIGHLELTTL 80
Cdd:PRK10459    1 MSLREKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASIIQRQDISHLQLSTL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288  81 YWLNVGLGIVVFAVVFWLSDAIAHVLHNPDLAPLIKTLSLAFIVIPHGQQFRALMQKELEFNKIGMIETTSVLAGFTFTV 160
Cdd:PRK10459   81 YWLNVGLGIVVFVLVFLLSPLIADFYHNPELAPLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEISAVVAGFTFAV 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288 161 ISAHYWPLALTAILGYLVNSAVRTLLFGYFGRKIYRPGLHFSLVSVSTNLRFGAWLTADSIVNYINTNLSTLVLARILGA 240
Cdd:PRK10459  161 VSAFFWPGALAAILGYLVNSSVRTLLFGYFGRKIYRPALHFSLASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGA 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288 241 GVAGGYNLAYNVAVVPPMKLNPIITRVLFPAFAKIQDDTEKLRVNFYKLLSVVGIINFPALLGLMVVANNFVPLVFGEKW 320
Cdd:PRK10459  241 EVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKIQDDTEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEKW 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288 321 RSIIPILQLLCVVGLLRSVGNPIGSLLMAKARVDISFKFNVFKTFLFIPAILIGGHLAGAIGVTLGFLVVQIINTILSYF 400
Cdd:PRK10459  321 NSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFKTFLFIPAIVIGGQLAGLIGVALGFLLVQIINTILSYF 400
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288 401 VMIKPVLGSSYRQYILSLWLPFYLSLPTFITSYGAGKLVDGYLPLSGVFALQVMIGILSFILMIIFSRNALVMEIKKQLF 480
Cdd:PRK10459  401 LMIKPVIGLSYRQYILSIWKPFYLSLPMLIVSYGLGLLLKGHLALGMLLAVQVAAGVLAYLLMIVLSRHALVVEVKRQFC 480
                         490
                  ....*....|..
gi 1403624288 481 GSAKMKKLLRVG 492
Cdd:PRK10459  481 RSEKMKKLLRVG 492
MATE_tuaB_like cd13127
Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; This ...
7-415 1.78e-110

Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; This family might function as a translocase for lipopolysaccharides and participate in the biosynthesis of cell wall components such as teichuronic acid. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.


Pssm-ID: 240532 [Multi-domain]  Cd Length: 406  Bit Score: 333.30  E-value: 1.78e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288   7 TISGAKWSAIATIVIIGLGLIQMTVLARIIDNHQFGLLTVSLVIIALADTISDFGIANSIIQRKTIGHLELTTLYWLNVG 86
Cdd:cd13127     1 AVSGAFWSAISQVVVQLLQFVVTIILARLLTPEDFGLVAMATVFIAFAQLFSDLGLSSALIQRKDLTEEDLSTVFWLNLL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288  87 LGIVVFAVVFWLSDAIAHVLHNPDLAPLIKTLSLAFIVIPHGQQFRALMQKELEFNKIGMIETTSVLAGFTFTVISAHYW 166
Cdd:cd13127    81 LGLLLYLLLFLLAPLIAAFYNEPELIPLLRVLSLSFLLSGLGSVPRALLQRELRFKKLAIIELISTLVSGVVAIVLALLG 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288 167 PLALTAILGYLVNSAVRTLLFGYFGRkiYRPGLHFSLVSVSTNLRFGAWLTADSIVNYINTNLSTLVLARILGAGVAGGY 246
Cdd:cd13127   161 FGVWALVAQQLVGALVSTVLLWILSR--WRPRLSFSLASLKELLSFGSKLLGSNLLNYFSRNLDNLIIGKFLGAAALGYY 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288 247 NLAYNVAVVPPMKLNPIITRVLFPAFAKIQDDTEKLRVNFYKLLSVVGIINFPALLGLMVVANNFVPLVFGEKWRSIIPI 326
Cdd:cd13127   239 SRAYRLALLPVQNITGPITRVLFPALSRLQDDPERLRRAYLKALRLLALITFPLMVGLALLAEPLVLLLLGEKWLPAVPI 318
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288 327 LQLLCVVGLLRSVGNPIGSLLMAKARVDISFKFNVFKTFLFIPAILIGGHLaGAIGVTLGFLVVQIINTILSYFVMIKPV 406
Cdd:cd13127   319 LQILALAGLFQPLSSLNGSLLLALGRTDLLLKLGLIKAVLTVLALLIGIPY-GIIGVAIAYVIASLLSFPLNLYLAGRLI 397

                  ....*....
gi 1403624288 407 LGSSYRQYI 415
Cdd:cd13127   398 GISLLELLR 406
Polysacc_synt_3 pfam13440
Polysaccharide biosynthesis protein;
31-325 2.57e-58

Polysaccharide biosynthesis protein;


Pssm-ID: 404342 [Multi-domain]  Cd Length: 293  Bit Score: 194.73  E-value: 2.57e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288  31 VLARIIDNHQFGLLTVSLVIIALADTISDFGIANSIIQRKTIGHLELTTLYWLNVGLGIVVFAVVFWLSDAIAHVLHNPD 110
Cdd:pfam13440   1 VLARLLSPEDFGVVAIATVVISFANIFVDMGFSSALIQKKDITETDYSTVFTFNLIFGALIYLILFALAPLIASFYNQPE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288 111 LAPLIKTLSLAFIVIPHGQQFRALMQKELEFNKIGMIETTSVLAGFTFTVISAH----YWPLaltaILGYLVNSAVRTLL 186
Cdd:pfam13440  81 LVPVLRVLALVLILNGLSSVQTALLRRDLRFKKLFKITLTSSVIGGIVGIVLAYlgfgVWAL----VIGTLAQQLLSLVL 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288 187 fgYFGRKIYRPGLHFSLVSVSTNLRFGAWLTADSIVNYINTNLSTLVLARILGAGVAGGYNLAYNVAVVPPMKLNPIITR 266
Cdd:pfam13440 157 --LWLASDWRPRLTFSLKVIKELFSFGSWLLLSNLLNYLARNLDNLIIGKVLGTAALGLYSVAYRLALLPTANITSVITK 234
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1403624288 267 VLFPAFAKIQDDTEKLRVNFYKLLSVVGIINFPALLGLMVVANNFVPLVFGEKWRSIIP 325
Cdd:pfam13440 235 VLFPALSRIQDDKAKLRELYLRVLRLIAFIVFPIMAGLAVVAEPLVLVLLGSQWLESVP 293
RfbX COG2244
Membrane protein involved in the export of O-antigen and teichoic acid [Cell wall/membrane ...
4-399 1.41e-34

Membrane protein involved in the export of O-antigen and teichoic acid [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 441845 [Multi-domain]  Cd Length: 366  Bit Score: 133.15  E-value: 1.41e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288   4 RQKTISGAKWSAIATIVIIGLGLIQMTVLARIIDNHQFGLLTVSLVIIALADTISDFGIANSIIQ-----RKTIGHLELT 78
Cdd:COG2244     1 LKKLLKNTLWLLLGQLLGALLGFLLLPLLARLLGPEEYGLFALALSIVALLSVLADLGLSTALVRfiaeyREEELRRLLS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288  79 TLYWLNVGLGIVVFAVVFWLSDAIAHVLHNPDLAPLIKTLSLAFIVIPHGQQFRALMQKELEFNKIGMIETTSVLAGFTF 158
Cdd:COG2244    81 TALLLRLLLSLLLALLLLLLAPFIAALLGEPELALLLLLLALALLLSALSAVLLALLRGLERFKLLALINILSSLLSLLL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288 159 TVISAHYWPLALTAILgylvnsavrtllfgyfgrkiyrpglhfslvsvstnlRFGAWLTADSIVNYINTNLSTLVLARIL 238
Cdd:COG2244   161 ALLLALLGLGLWGLVL------------------------------------KYSLPLLLSGLLGLLLTNLDRLLLGALL 204
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288 239 GAGVAGGYNLAYNVAVVPpMKLNPIITRVLFPAFAKI--QDDTEKLRVNFYKLLSVVGIINFPALLGLMVVANNFVPLVF 316
Cdd:COG2244   205 GPAAVGIYSAAYRLASLL-LLLITALSQVLFPRLSRLlaEGDREELRRLYRKALRLLLLLGLPLALGLALLAPPLLSLLF 283
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288 317 GEKWRSIIPILQLLCVVGLLRSVGNPIGSLLMAKARVDISFKFNVFKTFLFIPAILIGGHLAGAIGVTLGFLVVQIINTI 396
Cdd:COG2244   284 GPEYAEAAPVLPILALGALFLALSGVLSNLLLALGRTRLLLIISLIGAVLNLVLNLLLIPRYGLVGAAIATLLSYLVLLL 363

                  ...
gi 1403624288 397 LSY 399
Cdd:COG2244   364 LLL 366
 
Name Accession Description Interval E-value
PRK10459 PRK10459
MOP flippase family protein;
1-492 0e+00

MOP flippase family protein;


Pssm-ID: 236697 [Multi-domain]  Cd Length: 492  Bit Score: 682.14  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288   1 MNLRQKTISGAKWSAIATIVIIGLGLIQMTVLARIIDNHQFGLLTVSLVIIALADTISDFGIANSIIQRKTIGHLELTTL 80
Cdd:PRK10459    1 MSLREKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASIIQRQDISHLQLSTL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288  81 YWLNVGLGIVVFAVVFWLSDAIAHVLHNPDLAPLIKTLSLAFIVIPHGQQFRALMQKELEFNKIGMIETTSVLAGFTFTV 160
Cdd:PRK10459   81 YWLNVGLGIVVFVLVFLLSPLIADFYHNPELAPLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEISAVVAGFTFAV 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288 161 ISAHYWPLALTAILGYLVNSAVRTLLFGYFGRKIYRPGLHFSLVSVSTNLRFGAWLTADSIVNYINTNLSTLVLARILGA 240
Cdd:PRK10459  161 VSAFFWPGALAAILGYLVNSSVRTLLFGYFGRKIYRPALHFSLASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGA 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288 241 GVAGGYNLAYNVAVVPPMKLNPIITRVLFPAFAKIQDDTEKLRVNFYKLLSVVGIINFPALLGLMVVANNFVPLVFGEKW 320
Cdd:PRK10459  241 EVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKIQDDTEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEKW 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288 321 RSIIPILQLLCVVGLLRSVGNPIGSLLMAKARVDISFKFNVFKTFLFIPAILIGGHLAGAIGVTLGFLVVQIINTILSYF 400
Cdd:PRK10459  321 NSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFKTFLFIPAIVIGGQLAGLIGVALGFLLVQIINTILSYF 400
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288 401 VMIKPVLGSSYRQYILSLWLPFYLSLPTFITSYGAGKLVDGYLPLSGVFALQVMIGILSFILMIIFSRNALVMEIKKQLF 480
Cdd:PRK10459  401 LMIKPVIGLSYRQYILSIWKPFYLSLPMLIVSYGLGLLLKGHLALGMLLAVQVAAGVLAYLLMIVLSRHALVVEVKRQFC 480
                         490
                  ....*....|..
gi 1403624288 481 GSAKMKKLLRVG 492
Cdd:PRK10459  481 RSEKMKKLLRVG 492
MATE_tuaB_like cd13127
Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; This ...
7-415 1.78e-110

Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; This family might function as a translocase for lipopolysaccharides and participate in the biosynthesis of cell wall components such as teichuronic acid. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.


Pssm-ID: 240532 [Multi-domain]  Cd Length: 406  Bit Score: 333.30  E-value: 1.78e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288   7 TISGAKWSAIATIVIIGLGLIQMTVLARIIDNHQFGLLTVSLVIIALADTISDFGIANSIIQRKTIGHLELTTLYWLNVG 86
Cdd:cd13127     1 AVSGAFWSAISQVVVQLLQFVVTIILARLLTPEDFGLVAMATVFIAFAQLFSDLGLSSALIQRKDLTEEDLSTVFWLNLL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288  87 LGIVVFAVVFWLSDAIAHVLHNPDLAPLIKTLSLAFIVIPHGQQFRALMQKELEFNKIGMIETTSVLAGFTFTVISAHYW 166
Cdd:cd13127    81 LGLLLYLLLFLLAPLIAAFYNEPELIPLLRVLSLSFLLSGLGSVPRALLQRELRFKKLAIIELISTLVSGVVAIVLALLG 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288 167 PLALTAILGYLVNSAVRTLLFGYFGRkiYRPGLHFSLVSVSTNLRFGAWLTADSIVNYINTNLSTLVLARILGAGVAGGY 246
Cdd:cd13127   161 FGVWALVAQQLVGALVSTVLLWILSR--WRPRLSFSLASLKELLSFGSKLLGSNLLNYFSRNLDNLIIGKFLGAAALGYY 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288 247 NLAYNVAVVPPMKLNPIITRVLFPAFAKIQDDTEKLRVNFYKLLSVVGIINFPALLGLMVVANNFVPLVFGEKWRSIIPI 326
Cdd:cd13127   239 SRAYRLALLPVQNITGPITRVLFPALSRLQDDPERLRRAYLKALRLLALITFPLMVGLALLAEPLVLLLLGEKWLPAVPI 318
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288 327 LQLLCVVGLLRSVGNPIGSLLMAKARVDISFKFNVFKTFLFIPAILIGGHLaGAIGVTLGFLVVQIINTILSYFVMIKPV 406
Cdd:cd13127   319 LQILALAGLFQPLSSLNGSLLLALGRTDLLLKLGLIKAVLTVLALLIGIPY-GIIGVAIAYVIASLLSFPLNLYLAGRLI 397

                  ....*....
gi 1403624288 407 LGSSYRQYI 415
Cdd:cd13127   398 GISLLELLR 406
Polysacc_synt_3 pfam13440
Polysaccharide biosynthesis protein;
31-325 2.57e-58

Polysaccharide biosynthesis protein;


Pssm-ID: 404342 [Multi-domain]  Cd Length: 293  Bit Score: 194.73  E-value: 2.57e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288  31 VLARIIDNHQFGLLTVSLVIIALADTISDFGIANSIIQRKTIGHLELTTLYWLNVGLGIVVFAVVFWLSDAIAHVLHNPD 110
Cdd:pfam13440   1 VLARLLSPEDFGVVAIATVVISFANIFVDMGFSSALIQKKDITETDYSTVFTFNLIFGALIYLILFALAPLIASFYNQPE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288 111 LAPLIKTLSLAFIVIPHGQQFRALMQKELEFNKIGMIETTSVLAGFTFTVISAH----YWPLaltaILGYLVNSAVRTLL 186
Cdd:pfam13440  81 LVPVLRVLALVLILNGLSSVQTALLRRDLRFKKLFKITLTSSVIGGIVGIVLAYlgfgVWAL----VIGTLAQQLLSLVL 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288 187 fgYFGRKIYRPGLHFSLVSVSTNLRFGAWLTADSIVNYINTNLSTLVLARILGAGVAGGYNLAYNVAVVPPMKLNPIITR 266
Cdd:pfam13440 157 --LWLASDWRPRLTFSLKVIKELFSFGSWLLLSNLLNYLARNLDNLIIGKVLGTAALGLYSVAYRLALLPTANITSVITK 234
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1403624288 267 VLFPAFAKIQDDTEKLRVNFYKLLSVVGIINFPALLGLMVVANNFVPLVFGEKWRSIIP 325
Cdd:pfam13440 235 VLFPALSRIQDDKAKLRELYLRVLRLIAFIVFPIMAGLAVVAEPLVLVLLGSQWLESVP 293
Polysacc_synt pfam01943
Polysaccharide biosynthesis protein; Members of this family are integral membrane proteins. ...
10-276 6.73e-49

Polysaccharide biosynthesis protein; Members of this family are integral membrane proteins. Many members of the family are implicated in production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon. The family includes SpoVB from Bacillus subtilis, which is involved in spore cortex biosynthesis.


Pssm-ID: 426523 [Multi-domain]  Cd Length: 274  Bit Score: 169.02  E-value: 6.73e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288  10 GAKWSAIATIVIIGLGLIQMTVLARIIDNHQFGLLTVSLVIIALADTISDFGIANSIIQRKTIGHL--ELTTLYWLNVGL 87
Cdd:pfam01943   4 NVIVLLLSQLITYLLAFVTLPYLARILGPEGFGLYAFALAFVGLLTIFTDFGFNAALVREIAKYREkyELVSLYWLNALL 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288  88 GIVVFAVVFWLSDAIAHVLHNPDLAPLIKTLSLAFIVIPHGQQFRALMQKELEFNKIGMIETTSVLAGFTFTVISAHYWP 167
Cdd:pfam01943  84 VKLVLVLLFLLLPLIAAFLGLPELAVLYRILALMFLLLPGVVQFRRGLFQGLERMKYALISQIVESLSRVILVFIAVFLP 163
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288 168 LALTAILGYLVNSAVRTLLFG-YFGRKIYRPGLHF-SLVSVSTNLRFGAWLTADSIVNYINTNLSTLVLARILGAGVAGG 245
Cdd:pfam01943 164 GDIVAALLYQVLAALVGGIIAlAVLRKIFRPRFVFpSLKLVRKLLSFGAPLFISSLAISLYTYIDSILLGLLLGAGAVGI 243
                         250       260       270
                  ....*....|....*....|....*....|.
gi 1403624288 246 YNLAYNVAVVPPMKLNPIITRVLFPAFAKIQ 276
Cdd:pfam01943 244 YNAAYQLLVAIQGLLNPIVTAVLFPVFSKLQ 274
RfbX COG2244
Membrane protein involved in the export of O-antigen and teichoic acid [Cell wall/membrane ...
4-399 1.41e-34

Membrane protein involved in the export of O-antigen and teichoic acid [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 441845 [Multi-domain]  Cd Length: 366  Bit Score: 133.15  E-value: 1.41e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288   4 RQKTISGAKWSAIATIVIIGLGLIQMTVLARIIDNHQFGLLTVSLVIIALADTISDFGIANSIIQ-----RKTIGHLELT 78
Cdd:COG2244     1 LKKLLKNTLWLLLGQLLGALLGFLLLPLLARLLGPEEYGLFALALSIVALLSVLADLGLSTALVRfiaeyREEELRRLLS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288  79 TLYWLNVGLGIVVFAVVFWLSDAIAHVLHNPDLAPLIKTLSLAFIVIPHGQQFRALMQKELEFNKIGMIETTSVLAGFTF 158
Cdd:COG2244    81 TALLLRLLLSLLLALLLLLLAPFIAALLGEPELALLLLLLALALLLSALSAVLLALLRGLERFKLLALINILSSLLSLLL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288 159 TVISAHYWPLALTAILgylvnsavrtllfgyfgrkiyrpglhfslvsvstnlRFGAWLTADSIVNYINTNLSTLVLARIL 238
Cdd:COG2244   161 ALLLALLGLGLWGLVL------------------------------------KYSLPLLLSGLLGLLLTNLDRLLLGALL 204
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288 239 GAGVAGGYNLAYNVAVVPpMKLNPIITRVLFPAFAKI--QDDTEKLRVNFYKLLSVVGIINFPALLGLMVVANNFVPLVF 316
Cdd:COG2244   205 GPAAVGIYSAAYRLASLL-LLLITALSQVLFPRLSRLlaEGDREELRRLYRKALRLLLLLGLPLALGLALLAPPLLSLLF 283
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288 317 GEKWRSIIPILQLLCVVGLLRSVGNPIGSLLMAKARVDISFKFNVFKTFLFIPAILIGGHLAGAIGVTLGFLVVQIINTI 396
Cdd:COG2244   284 GPEYAEAAPVLPILALGALFLALSGVLSNLLLALGRTRLLLIISLIGAVLNLVLNLLLIPRYGLVGAAIATLLSYLVLLL 363

                  ...
gi 1403624288 397 LSY 399
Cdd:COG2244   364 LLL 366
MATE_Wzx_like cd13128
Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins; ...
13-403 1.37e-25

Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins; Escherichia coli Wzx and related proteins from other gram-negative bacteria are thought to act as flippases, assisting in the membrane translocation of lipopolysaccharides including those containing O-antigens. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).


Pssm-ID: 240533 [Multi-domain]  Cd Length: 402  Bit Score: 108.40  E-value: 1.37e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288  13 WSAIATIVIIGLGLIQMTVLARIIDNHQFGLLTVSLVIIALADTISDFGIANSIIQ-----RKTIGHLELTTLYWLNVGL 87
Cdd:cd13128     7 WLFVGNIISKLLGFLVRVYLARYLGPEGFGILSLALAFVGLFSIFADLGLPTALVReiaryRKEKIREIISTSLVLKLIL 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288  88 GIVVFAVVFWLSDAIAHvlHNPDLAPLIKTLSLAFIVIPHGQQFRALMQKELEFNKIGMIETTSVLAGFTFTVISAHYWP 167
Cdd:cd13128    87 GILALLLLFLFAFLIAF--YDPELVLLLYILALSLPFSALNSLFRGIFQGFEKMKYIVIARIIESVLSLILALILVLLGG 164
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288 168 LALTAILGYLVNSAVRTLLFGYFGRKIYRP--GLHFSLVSVSTNLRFGAWLTADSIVNYINTNLSTLVLARILGAGVAGG 245
Cdd:cd13128   165 GLIGFALAYLIASVLSAILLLYIYRKKILLpkFFSFDLKLAKELLRFSIPLALSGIFSLIYTRIDTIMLGYFLGDAAVGI 244
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288 246 YNLAYNVAVVPPMKLNPIiTRVLFPAFAK-IQDDTEKLRVNFYKLLSVVGIINFPALLGLMVVANNFVPLVFGEKWRSII 324
Cdd:cd13128   245 YNAAYRIAELLLFIPSAI-STALFPRISElYKNDKDELKKLLKKSFKYLFLISLPIAIGLFLFAEPIITLLFGEEYLPAA 323
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288 325 PILQLLCVVGLLRSVGNPIGSLLMAKARVDISFK-------FNVFKTFLFIPAIligghlaGAIGVTLGFLVVQIINTIL 397
Cdd:cd13128   324 LVLQILAWGFLFIFLNGIFGSILQAIGKQKLTLKilligalLNVILNLLLIPKY-------GIIGAAIATLISEFIIFIL 396

                  ....*.
gi 1403624288 398 SYFVMI 403
Cdd:cd13128   397 LLYLLK 402
MATE_epsE_like cd13129
Multidrug and toxic compound extrusion family and similar proteins; This model represents a ...
9-403 2.23e-11

Multidrug and toxic compound extrusion family and similar proteins; This model represents a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins, including Ralstonia solanaceraum GMI1000 epsE, which may be involved in exporting exopolysaccharide EPS I, a virulence factor. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).


Pssm-ID: 240534 [Multi-domain]  Cd Length: 411  Bit Score: 65.59  E-value: 2.23e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288   9 SGAKWSAIATIVIIGLGLIQMTVLARIIDNHQFGLLTVSLVIIALADTISDFGIanSIIQRKTIGHLE----------LT 78
Cdd:cd13129     4 SGSFWSLGGLVASRGAVFLTNIMVARSLGKHVFGEFGVIQVTIGLLGTFAGFGL--GLAATKVIAETKdvdperagriIG 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288  79 TLYWLNVGLGIVVFAVVFWLSDAIA-HVLHNPDLAPLIKTLSLAFIVIPHGQQFRALMQKELEFNKIGMIETTSVLAGFT 157
Cdd:cd13129    82 LSILLAVVTGALAATVLFLSATWIAiATLNAPHLAELLRIAAIILILTAFTGAQTGFLSGFEAFRAIARVNIWAGLLLLP 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288 158 FTVISAHYWPLaLTAILGYLVNSAVRTLLFGYFGRKIY----------------RPGLHFSLVSVSTNlrfgawltadSI 221
Cdd:cd13129   162 LMWIGVYIRGL-VGAVVILLASAAGNVASNSLILRRECqnqrgpvrtgltwqelRVLFKFSLPSVLSG----------SM 230
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288 222 VNYINTNLSTLVLARILGAGVAGGYNLAYNVAVVpPMKLNPIITRVLFPAFAKIQDDTE-KLRVNFYKLLSVVGIINFPA 300
Cdd:cd13129   231 GSPVHWIALAILVNQPNGYAELGLFNAANQWRQF-ITFLPATLGNVALPFLAENFGNNEgMFRQTFRSALLFGLGLSLPL 309
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288 301 LLGLMVVANNFVPLvFGEKWRSIIPILQLLCVVGLLRSVGNPIGSLLMAKARVDISFKFNVFKTFLFIPAILIGGHLAGA 380
Cdd:cd13129   310 GCVFILASQIFAWL-YGKEYGSAAASMRSLAVAAILVGLSVLLGQIIASSGKIWRGFALNMVWSVIYVAAAYLLLRLYGA 388
                         410       420
                  ....*....|....*....|...
gi 1403624288 381 IGVTLGFLVVQIINTILSYFVMI 403
Cdd:cd13129   389 PGLALAMSAAYCVLIIFQTLTLQ 411
MATE_like_10 cd13125
Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; This ...
13-404 2.19e-08

Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; This family might function as a translocase for lipopolysaccharides, such as O-antigen. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.


Pssm-ID: 240530 [Multi-domain]  Cd Length: 409  Bit Score: 56.01  E-value: 2.19e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288  13 WSAIATIVIIGLGLIQMTVLARIIDNHQFGLLTVSLVIIALADTISDFGIANSIIQ-----RKTIGHLE--LTTLYWLNV 85
Cdd:cd13125     5 LSGISTLIKILAGLIINKVVAVYLGPSGVALLGQLQNFVTILQTIAGGGINNGVVKytaeyKDDEEKLArvWSTAFRITL 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288  86 GLGIVVFAVVFWLSDAIAHV-LHNPDLAPLIKTLSLAFIVIPHGQQFRALMQKELEFNKIGMIETTSVLAGFTFTVISAH 164
Cdd:cd13125    85 ILSILGGLLLLLFSKPLSSLlFGDIDYSWVFILLGLALPLFALNNLLLAILNGLKEIKRYALINIISSLIGLLVSVLLVY 164
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288 165 YWPLAlTAILGYLVNSAVRTLLFGYFGRKIYRpglhFSLVSVSTNLRFGAW-----LTADSIVNYINTNLSTLV----LA 235
Cdd:cd13125   165 FYGLK-GALLALVLNQSLIFLVTLIYSRKQPW----FKLKYLWGRLDKDIIkkllkFSLMALVSALSLPLSQIIvrniLI 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288 236 RILGAGVAGGYNLAYNVAVVPPMKLNPIITRVLFPAFAKIQDdTEKLRVNFYKLLSVVGIINFPALLGLMVVANNFVPLV 315
Cdd:cd13125   240 RQLGWEAAGYWQAVWKISDVYLGFITTALSTYYLPRLSAIKD-NKELKREVNKQLKVILPLVAIGALLIYLLRDLIIQIL 318
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288 316 FGEKWRSIIPILQLLCVVGLLRSVGNPIGSLLMAKARVDISFKFNVFKTFLFIPAILIGGHLAGAIGVTLGFLVVQIINT 395
Cdd:cd13125   319 FSEEFLPARELFLWQLIGDFFKIASWLLGYILLAKGMTKLFIITEILFALLFVLLSLLFIPLFGLEGAGIAYAINYILYL 398

                  ....*....
gi 1403624288 396 ILSYFVMIK 404
Cdd:cd13125   399 ILMYFIFRK 407
MATE_like_11 cd13126
Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; This ...
79-393 2.81e-07

Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; This family might function as a translocase for lipopolysaccharides, such as O-antigen. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.


Pssm-ID: 240531 [Multi-domain]  Cd Length: 396  Bit Score: 52.69  E-value: 2.81e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288  79 TLYWLNVGLGIVVFAVVFWLSDAIAHVLhnpdlapliktLSLAFIVIPHGQQ--FRALMQKELEFNKIGMIETTSVLAGF 156
Cdd:cd13126    78 TALAVGLALGLVTALVGALLGGTVGSPL-----------VALGVVLPGLLLQdaWRGAFFAQGRPGRAAANDLVWAVAQL 146
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288 157 TFTVISAHYWPLALTAILGyLVNSAVRTLLFGYFGRKIyRPGLHFSLVSVSTNLRFGAWLTADSIVNYINTNLSTLVLAR 236
Cdd:cd13126   147 AGAMLIVALVSGVAAALLA-WGASAVVAALLGRAQAGL-WPRPRGALAWLREHRDLTGYLLAEFVLGQGAAQNSDLLLGA 224
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288 237 ILGAGVAGGYNLAyNVAVVPPMKLNPIITRVLFPAFAKIQDDTEKLRVNFYKLLS-VVGIINFPALLGLMVVANNFVPLV 315
Cdd:cd13126   225 LGSLAAVGALRGA-QTLLGPLTILAAGLVTAAVPELARRKDMSPRRRRRAALVLSgVVAAAALVWGLALLLLPDLIGEAL 303
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1403624288 316 FGEKWRSIIPILQLLCVVGLLRSVGNPIGSLLMAKARVDISFKFNVFKTFLFIPAILIGGHLAGAIGVTLGFLVVQII 393
Cdd:cd13126   304 LGDVWAGAQALLLPLILAQAGAALAVGPAAYLLALGRAKGTLRVNLVGAPQLLGLGLTGALLGGAVGAAWGLALALLL 381
MATE_SpoVB_like cd13124
Stage V sporulation protein B, also known as Stage III sporulation protein F, and related ...
15-126 4.54e-05

Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins; The integral membrane protein SpoVB has been implicated in the biosynthesis of the peptidoglycan component of the spore cortex in Bacillus subtilis. This model represents a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).


Pssm-ID: 240529 [Multi-domain]  Cd Length: 434  Bit Score: 45.92  E-value: 4.54e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288  15 AIATIVIIGLGLIQMTVLARIIDNHQFGLLTVSLVIIALADTISDFGI----------ANSIIQRKTIGHLELTTLYWLn 84
Cdd:cd13124     4 TIAGLISKILGAIYRIPLQNIIGDEGMGLYQMAYPIYGIFLTLATAGIpvaisklvaeYNALGDYKGARRIFRVSLILL- 82
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1403624288  85 VGLGIVVFAVVFWLSDAIA-HVLHNPDLAPLIKTLSLAFIVIP 126
Cdd:cd13124    83 LILGLVFFLLLFFGAPFLAqLLLGDPRLAPVIRALAPAILIVP 125
MATE_like cd12082
Multidrug and toxic compound extrusion family and similar proteins; The integral membrane ...
11-398 9.26e-05

Multidrug and toxic compound extrusion family and similar proteins; The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.


Pssm-ID: 240527 [Multi-domain]  Cd Length: 420  Bit Score: 44.62  E-value: 9.26e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288  11 AKWSAIATIVIIGLGLIQMTVLARIIDN--HQFGLLTVSLVIIALADTISDFGIANSIIQRKTIGHLE-----LTTLYWL 83
Cdd:cd12082     1 AAPLLLSMLLQTLYNLVDTFFLGRLLGDalAAVGLAFPLIALLIALGVGLSVGTSALISQAIGAGDEEkarrvLVQSIVL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288  84 NVGLGIVVFAVVFWLSDAIAHVLHNPDL-----APLIKTLSLAFIVIPHGQQFRALMQKELEFNKIGMIETTSVLAGFTF 158
Cdd:cd12082    81 AILLGLLLAALLLFFSPLILSLLGAEEEvielaATYLTILILGLPITFLGAVLSGILQGEGDTRTAMIISVLSNLLNILL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288 159 TVISAHYW--------PLALTAILGYLVNS--AVRTLLFGYFGRKIYRPGLHFSLVSVSTNLRFGAWLTADSIVNYINTN 228
Cdd:cd12082   161 DPLLIFGLgppelgiaGAALATVISYVIGAllLLIYLRKGKKILKFKLSLLKPDLELLRRLLRIGLPSAIQNSLLSLGLL 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288 229 LSTLVLARILGAGVAGGYNLAYNVAVVPPMKLNPIITRVL-FPAFAKIQDDTEKLRVNFYKLLSVVGIINFpALLGLMVV 307
Cdd:cd12082   241 IIVAIVAAFGGAAALAAYTVAFRIASLAFMPALGLAQAALpVVGQNLGAGNFDRARRITWVALLIGLLIGA-VLGLLILL 319
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288 308 ANNFVPLVF--GEKWRSI-IPILQLLCVVGLLRSVGNPIGSLLMAKARVDISFKFNVFKTF-LFIPAILIGGHLA-GAIG 382
Cdd:cd12082   320 FPEPILSLFtnDPEFLELaVSYLRILAIYYLFVGIGYVLQAGFQAAGRTLKSLIVSLLSYWvVRLPLAYVLAYLGlGLYG 399
                         410
                  ....*....|....*.
gi 1403624288 383 VTLGFLVVQIINTILS 398
Cdd:cd12082   400 IWLALVISLILAALVL 415
MurJ COG0728
Lipid II flippase MurJ/MviN (peptidoglycan biosynthesis) [Cell wall/membrane/envelope ...
158-468 7.64e-03

Lipid II flippase MurJ/MviN (peptidoglycan biosynthesis) [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440492 [Multi-domain]  Cd Length: 503  Bit Score: 38.59  E-value: 7.64e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288 158 FTVISAHYWPLALTAI-LGYLVNSAVRTLLFGYFGRKI---YRPGLHFSLVSVSTNLRFGAWLTADSIVNYINTNLSTlV 233
Cdd:COG0728   169 GLLLLAPLFGPGIYALaWGVLLGGVLQLLIQLPALRRLglrLRPRFDLRDPGVRRVLKLMLPALLGVSVSQINLLVDT-I 247
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288 234 LARILGAGVAGGYNLAYNVAVVPPMKLNPIITRVLFPAFAKI--QDDTEKLRVNFYKLLSVVGIINFPALLGLMVVANNF 311
Cdd:COG0728   248 LASFLPEGSVSALYYADRLYQLPLGLFGVAIGTALLPRLSRAaaAGDLEEFRRTLSRGLRLVLLLTLPAAVGLIVLAEPI 327
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288 312 VPLVFG------EKWRSIIPILQLLCvVGLLRSVGNPIGS-LLMAKARVDISFKFNVFKTFLFIPAILIGGHLAGAIGVT 384
Cdd:COG0728   328 VRLLFErgaftaEDTALTALALAAYA-LGLPAFALVKVLArAFYARQDTRTPVRIAVIAVVVNIVLNLLLVPPLGHAGLA 406
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403624288 385 LGFLVVQIINTILSYFVMIKPVLGSSYRQYILSLWLPFYLSLPTFITSYGAGKLVDGYLPLS-----GVFALQVMIGILS 459
Cdd:COG0728   407 LATSLSALVNALLLLVLLRRRLGGLPLRGILRTLLKLLLASLVMGAVLWLLLRLLGDWLGGGllgrlLALALLILVGAAV 486

                  ....*....
gi 1403624288 460 FILMIIFSR 468
Cdd:COG0728   487 YFALLLLLG 495
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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