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Conserved domains on  [gi|14017602|ref|NP_114288|]
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cytochrome b6/f complex subunit IV (chloroplast) [Triticum aestivum]

Protein Classification

cytochrome b6/f complex subunit IV( domain architecture ID 10000064)

cytochrome b6/f complex subunit IV is a component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
petD CHL00058
cytochrome b6/f complex subunit IV
 1-160 3.75e-118

cytochrome b6/f complex subunit IV


:

Pssm-ID: 176998  Cd Length: 160  Bit Score: 330.04  E-value: 3.75e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14017602    1 MGVTKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWY 80
Cdd:CHL00058   1 MGVTKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14017602   81 FFPVFQILRTVPNKLLGVLLMVSVPTGLLTVPFLENVNKFQNPFRRPVATTVFLIGTVVALWLGIGATLPIDKSLTLGLF 160
Cdd:CHL00058  81 FFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 160
 
Name Accession Description Interval E-value
petD CHL00058
cytochrome b6/f complex subunit IV
 1-160 3.75e-118

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 330.04  E-value: 3.75e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14017602    1 MGVTKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWY 80
Cdd:CHL00058   1 MGVTKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14017602   81 FFPVFQILRTVPNKLLGVLLMVSVPTGLLTVPFLENVNKFQNPFRRPVATTVFLIGTVVALWLGIGATLPIDKSLTLGLF 160
Cdd:CHL00058  81 FFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 160
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 1-159 4.06e-102

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 289.78  E-value: 4.06e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14017602     1 MGVTKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWY 80
Cdd:TIGR01156   1 MSVTKKPDLSDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACVVGLAVLDPAMIGEPANPFATPLEILPEWY 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 14017602    81 FFPVFQILRTVPNKLLGVLLMVSVPTGLLTVPFLENVNKFQNPFRRPVATTVFLIGTVVALWLGIGATLPIDKSLTLGL 159
Cdd:TIGR01156  81 FYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFRRPVATTVFLFGTVVALWLGIGATLPIDKSLTLGL 159
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 3-160 7.04e-92

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 263.96  E-value: 7.04e-92
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14017602   3 VTKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFF 82
Cdd:COG5679   4 LLKKPDLTDPKLRAKLEKGMGHNYYGEPAWPNDLLYIFPVVILGTIALCIGLAVLDPAMMGEPADPFATPLEILPEWYLY 83

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 14017602  83 PVFQILRTVPNKLLGVLLMVSVPTGLLTVPFLENVNKFQNPFRRPVATTVFLIGTVVALWLGIGATLPIDKSLTLGLF 160
Cdd:COG5679  84 PVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENVNKFQNPFRRPVATAVFLFGTLVTLWLGIGAALPIDKSLTLGLF 161
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 14-160 2.08e-59

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 180.92  E-value: 2.08e-59
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14017602  14 LRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPN 93
Cdd:cd00290   1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 14017602  94 KLLGVLLMVSVPTGLLTVPFLENVNKF-QNPFRRPVATTVFLIGTVVALWLGIGATLpIDKSLTLGLF 160
Cdd:cd00290  81 KLLGVLAMAASILSLFLVPFLENSNKRsQFRPLRPTAFWVFLAGTLVLGWLGIQPVE-YPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
65-150 9.86e-17

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 70.97  E-value: 9.86e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14017602    65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPTGLLTVPFLENvNKFQNPFRRPVATTVFLIGTVVALWLG 144
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDR-SPVRSIRYRPLFKIFFWLFVVDFVVLG 79


                  ....*.
gi 14017602   145 IGATLP 150
Cdd:pfam00032  80 WLGKQP 85
 
Name Accession Description Interval E-value
petD CHL00058
cytochrome b6/f complex subunit IV
 1-160 3.75e-118

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 330.04  E-value: 3.75e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14017602    1 MGVTKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWY 80
Cdd:CHL00058   1 MGVTKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14017602   81 FFPVFQILRTVPNKLLGVLLMVSVPTGLLTVPFLENVNKFQNPFRRPVATTVFLIGTVVALWLGIGATLPIDKSLTLGLF 160
Cdd:CHL00058  81 FFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 160
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 1-159 4.06e-102

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 289.78  E-value: 4.06e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14017602     1 MGVTKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWY 80
Cdd:TIGR01156   1 MSVTKKPDLSDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACVVGLAVLDPAMIGEPANPFATPLEILPEWY 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 14017602    81 FFPVFQILRTVPNKLLGVLLMVSVPTGLLTVPFLENVNKFQNPFRRPVATTVFLIGTVVALWLGIGATLPIDKSLTLGL 159
Cdd:TIGR01156  81 FYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFRRPVATTVFLFGTVVALWLGIGATLPIDKSLTLGL 159
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 3-160 7.04e-92

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 263.96  E-value: 7.04e-92
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14017602   3 VTKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFF 82
Cdd:COG5679   4 LLKKPDLTDPKLRAKLEKGMGHNYYGEPAWPNDLLYIFPVVILGTIALCIGLAVLDPAMMGEPADPFATPLEILPEWYLY 83

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 14017602  83 PVFQILRTVPNKLLGVLLMVSVPTGLLTVPFLENVNKFQNPFRRPVATTVFLIGTVVALWLGIGATLPIDKSLTLGLF 160
Cdd:COG5679  84 PVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENVNKFQNPFRRPVATAVFLFGTLVTLWLGIGAALPIDKSLTLGLF 161
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 14-160 2.08e-59

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 180.92  E-value: 2.08e-59
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14017602  14 LRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPN 93
Cdd:cd00290   1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 14017602  94 KLLGVLLMVSVPTGLLTVPFLENVNKF-QNPFRRPVATTVFLIGTVVALWLGIGATLpIDKSLTLGLF 160
Cdd:cd00290  81 KLLGVLAMAASILSLFLVPFLENSNKRsQFRPLRPTAFWVFLAGTLVLGWLGIQPVE-YPFSLILQLF 147
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
28-151 3.66e-20

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 85.23  E-value: 3.66e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14017602  28 GEPAWPNDLLY--IFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVP--NKLLGVLLMVS 103
Cdd:COG1290 233 GVPFHPYYTVKdgFGFFVFLGVFALLAFFFPINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGL 312

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*...
gi 14017602 104 VPTGLLTVPFLENvNKFQNPFRRPVATTVFLIGTVVALWLGIGATLPI 151
Cdd:COG1290 313 AILVLFLLPFLDR-SPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP 359
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
65-150 9.86e-17

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 70.97  E-value: 9.86e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14017602    65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPTGLLTVPFLENvNKFQNPFRRPVATTVFLIGTVVALWLG 144
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDR-SPVRSIRYRPLFKIFFWLFVVDFVVLG 79


                  ....*.
gi 14017602   145 IGATLP 150
Cdd:pfam00032  80 WLGKQP 85
CYTB MTH00119
cytochrome b; Provisional
 54-144 1.28e-13

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 66.85  E-value: 1.28e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14017602   54 LAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPTGLLTVPFLENVNKFQNPFrRPV 128
Cdd:MTH00119 243 LALFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTF-RPL 321

                         90
                 ....*....|....*....
gi 14017602  129 ATTVF--LIGTVVAL-WLG 144
Cdd:MTH00119 322 SQLLFwtLVANLLILtWIG 340
CYTB MTH00016
cytochrome b; Validated
 53-143 2.08e-13

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 66.24  E-value: 2.08e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14017602   53 GLAVLEPSMIGE-----PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPTGLLTVPFLeNVNKFQNPFRRP 127
Cdd:MTH00016 242 SVVLLWPNILGDpenfiPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFI-FKQKFRGLSFYP 320

                         90
                 ....*....|....*.
gi 14017602  128 VATTVFLIGTVVALWL 143
Cdd:MTH00016 321 LNQILFWLLVSNFLLL 336
CYTB MTH00034
cytochrome b; Validated
 54-144 7.23e-13

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 64.73  E-value: 7.23e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14017602   54 LAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPTGLLTVPFLENVNKFQNPFrRPV 128
Cdd:MTH00034 242 LALLFPTALNDPenfipANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTF-RPL 320

                         90
                 ....*....|....*....
gi 14017602  129 ATTVF--LIGTVVAL-WLG 144
Cdd:MTH00034 321 SQIAFwlLIATFFILtWIG 339
CYTB MTH00191
cytochrome b; Provisional
 54-144 2.80e-12

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 63.01  E-value: 2.80e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14017602   54 LAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPTGLLTVPFLENVNKFQNPFrRPV 128
Cdd:MTH00191 239 LVLFSPNLLGDPenfipANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTF-RPL 317

                         90
                 ....*....|....*....
gi 14017602  129 ATTVF---LIGTVVALWLG 144
Cdd:MTH00191 318 TQVVFwlwVANFILLTWLG 336
CYTB MTH00131
cytochrome b; Provisional
 54-144 4.10e-12

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 62.75  E-value: 4.10e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14017602   54 LAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPTGLLTVPFLENVNKFQNPFrRPV 128
Cdd:MTH00131 242 LALFSPNLLGDPdnftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTF-RPL 320

                         90
                 ....*....|....*....
gi 14017602  129 ATTVF--LIGTVVAL-WLG 144
Cdd:MTH00131 321 TQFLFwtLVADVLILtWIG 339
CYTB MTH00100
cytochrome b; Provisional
 54-144 5.69e-12

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 62.35  E-value: 5.69e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14017602   54 LAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPTGLLTVPFLeNVNKFQNPFRRPV 128
Cdd:MTH00100 242 LVLFSPDLLGDPdnytpANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLL-HTSKQRSMMFRPL 320

                         90
                 ....*....|....*....
gi 14017602  129 ATTVF--LIGTVVAL-WLG 144
Cdd:MTH00100 321 SQCLFwlLVADLLTLtWIG 339
CYTB MTH00145
cytochrome b; Provisional
 52-144 6.73e-12

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 61.84  E-value: 6.73e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14017602   52 VGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPTGLLTVPFLeNVNKFQNPFRR 126
Cdd:MTH00145 241 VFLVLFFPNLLGDPenfipANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLL-HVGKFRSLSFY 319

                         90       100
                 ....*....|....*....|.
gi 14017602  127 PVATTVF--LIGTVVAL-WLG 144
Cdd:MTH00145 320 PLNQVLFwiFVGNFFILtWIG 340
CYTB MTH00022
cytochrome b; Validated
 10-144 5.74e-11

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 59.33  E-value: 5.74e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14017602   10 NDPV-LRAKLAKGMGHNYYGEPAWpndllyiFPVVILGTIACnvGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFP 83
Cdd:MTH00022 205 NNPIgLNSSVDKVSFHVYYTSKDW-------YGIVVLFFLLS--FIVYFAPNLLGDPenfiqANSLVTPVHIQPEWYFLF 275

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 14017602   84 VFQILRTVPNKLLGVLLMVSVPTGLLTVPFLENvNKFQNPFRRP---VATTVFLIGTVVALWLG 144
Cdd:MTH00022 276 AYAILRSIPNKLGGVVAMFFSILILFFLPLLHT-SWLRGLTFRPlgrMAFWFLIVDFILLTWIG 338
CYTB MTH00074
cytochrome b; Provisional
 54-144 9.35e-11

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 58.92  E-value: 9.35e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14017602   54 LAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPTGLLTVPFLENVNKFQNPFrRPV 128
Cdd:MTH00074 243 LSLFSPNLLGDPdnftpANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMF-RPL 321

                         90
                 ....*....|....*....
gi 14017602  129 ATTVF---LIGTVVALWLG 144
Cdd:MTH00074 322 TQILFwllVANTLILTWIG 340
CYTB MTH00053
cytochrome b; Provisional
 39-144 1.82e-10

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 57.79  E-value: 1.82e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14017602   39 IFPVVILGTIACNvgLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPTGLLTVPF 113
Cdd:MTH00053 230 LYGAVILLIILSI--IVFLFPYSLGDAenfkqANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPY 307

                         90       100       110
                 ....*....|....*....|....*....|....
gi 14017602  114 LENvNKFQNPFRRPVATTVF--LIGTVVAL-WLG 144
Cdd:MTH00053 308 LHK-SRFRGLSFRPLSKILFwfLVGDFFLLtWIG 340
CYTB MTH00156
cytochrome b; Provisional
 65-144 6.05e-10

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 56.33  E-value: 6.05e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14017602   65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPTGLLTVPFLeNVNKFQNPFRRPVATTVF--LIGTVVAL- 141
Cdd:MTH00156 248 PANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFT-NKSKFRGNQFYPINKILFwiFVNIVILLt 326


                 ...
gi 14017602  142 WLG 144
Cdd:MTH00156 327 WIG 329
CYTB MTH00224
cytochrome b; Provisional
 54-143 6.13e-10

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 56.47  E-value: 6.13e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14017602   54 LAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPTGLLTVPFLENVNKFQNPFrRPV 128
Cdd:MTH00224 243 MVLFEPNLFTDPenflmANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPF-YPL 321

                         90
                 ....*....|....*
gi 14017602  129 ATTVFLIgtVVALWL 143
Cdd:MTH00224 322 NQLLFWL--LVTSWA 334
CYTB MTH00086
cytochrome b; Provisional
 32-144 3.97e-09

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 54.18  E-value: 3.97e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14017602   32 WPNDLLYIFPVVILgtiacnVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPT 106
Cdd:MTH00086 214 WNKDAYNIIFWLVF------IIFSLFYPFNLGDPemfieADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIV 287

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 14017602  107 GLLTVPFLEN-------VNKFQNpfrrpvatTVFLIGTVVALWLG 144
Cdd:MTH00086 288 VFYFFIFVNNytsclnkLNKFLV--------FSFIVVNVILSWLG 324
CYTB MTH00033
cytochrome b; Provisional
 66-115 9.00e-07

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 47.24  E-value: 9.00e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 14017602   66 ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPTGLLTVPFLE 115
Cdd:MTH00033 258 ANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILD 307
CYTB MTH00046
cytochrome b; Validated
 66-103 4.24e-05

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 42.28  E-value: 4.24e-05
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 14017602   66 ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVS 103
Cdd:MTH00046 251 ADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLVLVLS 288
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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