NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1401124454|gb|PYU84715|]
View 

zinc-binding protein [Acidobacteria bacterium]

Protein Classification

zf-trcl and cxxc_cxxc_Mbark domain-containing protein( domain architecture ID 10602977)

zf-trcl and cxxc_cxxc_Mbark domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
zf-trcl pfam13451
Probable zinc-ribbon domain; This is a probable zinc-binding domain with two CxxC sequence ...
 5-46 6.36e-15

Probable zinc-ribbon domain; This is a probable zinc-binding domain with two CxxC sequence motifs, found in various families of bacteria.


:

Pssm-ID: 463883  Cd Length: 48  Bit Score: 63.00  E-value: 6.36e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1401124454   5 DRVLKCSECSAEFVFTAGEQMFFADKGFKNEPKRCKNCKAKR 46
Cdd:pfam13451   2 DKTLTCKDCGAEFVFTAGEQEFYAEKGFDNEPKRCPACRKAR 43
cxxc_cxxc_Mbark TIGR04272
CxxC-x17-CxxC domain; This domain, with a pair of CXXC motifs separated by 17 amino acids, is ...
 62-98 2.85e-13

CxxC-x17-CxxC domain; This domain, with a pair of CXXC motifs separated by 17 amino acids, is a candidate zinc finger domain based on these motifs. Some proteins have two copies of the domain, while others are fused to another probable zinc-binding domain, described by pfam13451.


:

Pssm-ID: 275095  Cd Length: 37  Bit Score: 58.36  E-value: 2.85e-13
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1401124454  62 RSETKTNCSQCGKETTVPFRPTQGRPVFCRECFQQRR 98
Cdd:TIGR04272   1 REMYEAVCAECGQETQVPFKPTGDRPVYCRECFQKRR 37
 
Name Accession Description Interval E-value
zf-trcl pfam13451
Probable zinc-ribbon domain; This is a probable zinc-binding domain with two CxxC sequence ...
 5-46 6.36e-15

Probable zinc-ribbon domain; This is a probable zinc-binding domain with two CxxC sequence motifs, found in various families of bacteria.


Pssm-ID: 463883  Cd Length: 48  Bit Score: 63.00  E-value: 6.36e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1401124454   5 DRVLKCSECSAEFVFTAGEQMFFADKGFKNEPKRCKNCKAKR 46
Cdd:pfam13451   2 DKTLTCKDCGAEFVFTAGEQEFYAEKGFDNEPKRCPACRKAR 43
cxxc_cxxc_Mbark TIGR04272
CxxC-x17-CxxC domain; This domain, with a pair of CXXC motifs separated by 17 amino acids, is ...
 62-98 2.85e-13

CxxC-x17-CxxC domain; This domain, with a pair of CXXC motifs separated by 17 amino acids, is a candidate zinc finger domain based on these motifs. Some proteins have two copies of the domain, while others are fused to another probable zinc-binding domain, described by pfam13451.


Pssm-ID: 275095  Cd Length: 37  Bit Score: 58.36  E-value: 2.85e-13
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1401124454  62 RSETKTNCSQCGKETTVPFRPTQGRPVFCRECFQQRR 98
Cdd:TIGR04272   1 REMYEAVCAECGQETQVPFKPTGDRPVYCRECFQKRR 37
 
Name Accession Description Interval E-value
zf-trcl pfam13451
Probable zinc-ribbon domain; This is a probable zinc-binding domain with two CxxC sequence ...
 5-46 6.36e-15

Probable zinc-ribbon domain; This is a probable zinc-binding domain with two CxxC sequence motifs, found in various families of bacteria.


Pssm-ID: 463883  Cd Length: 48  Bit Score: 63.00  E-value: 6.36e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1401124454   5 DRVLKCSECSAEFVFTAGEQMFFADKGFKNEPKRCKNCKAKR 46
Cdd:pfam13451   2 DKTLTCKDCGAEFVFTAGEQEFYAEKGFDNEPKRCPACRKAR 43
cxxc_cxxc_Mbark TIGR04272
CxxC-x17-CxxC domain; This domain, with a pair of CXXC motifs separated by 17 amino acids, is ...
 62-98 2.85e-13

CxxC-x17-CxxC domain; This domain, with a pair of CXXC motifs separated by 17 amino acids, is a candidate zinc finger domain based on these motifs. Some proteins have two copies of the domain, while others are fused to another probable zinc-binding domain, described by pfam13451.


Pssm-ID: 275095  Cd Length: 37  Bit Score: 58.36  E-value: 2.85e-13
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1401124454  62 RSETKTNCSQCGKETTVPFRPTQGRPVFCRECFQQRR 98
Cdd:TIGR04272   1 REMYEAVCAECGQETQVPFKPTGDRPVYCRECFQKRR 37
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH