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Conserved domains on  [gi|140001|sp|P03545|]
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RecName: Full=Movement protein; Short=MP; AltName: Full=Cell-to-cell transport protein

Protein Classification

MP domain-containing protein( domain architecture ID 10471406)

MP domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MP pfam01107
Viral movement protein (MP); This family includes a variety of movement proteins (MP)s. The MP ...
 43-242 4.62e-67

Viral movement protein (MP); This family includes a variety of movement proteins (MP)s. The MP is necessary for the initial cell-to-cell movement during the early stages of a viral infection. This movement is active, and it is known that the MP interacts with the plasmodesmata and possesses the ability to bind to RNA to achieve its role. This family also includes consists of virus movement proteins from the caulimovirus family. It has been suggested in cauliflower mosaic virus that these proteins mediated viral movement by modifying plasmodesmata and forming tubules in the channel that can accommodate the virus particles and references therein. The family contains a conserved DXR motif that is probably functionally important.


:

Pssm-ID: 279452  Cd Length: 191  Bit Score: 208.41  E-value: 4.62e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 140001      43 LKNISKTQ-LTLEKEKIFKMpnVLSQVMKKAFSRKNEILYCVSTKELsvdIHDATGKVYLPLITKEEINKRLSslkpeVR 121
Cdd:pfam01107   1 KKEIEETDfIDLTKSEIFYP--SMFKPLKKVFIRKNEKLFKVSTREI---IGDGDSLSELPLIDQEEIKKRLS-----KR 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 140001     122 KTMSMVHLGAVKILLKAQFRNGIDTPIKIALIDDRINSRRDCLLGAAKGNLAYGKFMFTVYPKFGISLNTQRLNQTLSLI 201
Cdd:pfam01107  71 KSYRYVHLGALQVVIKANFPNGIDTPGEIILYDNRLERRKEATIQSYKGNLAYGKFKFTVVPNYSISTQDANLDNSWSVL 150

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 140001     202 HDFENKNlMNKGDKVMTITYVVGYALTNSHHSIDYQS-NATI 242
Cdd:pfam01107 151 VNFENVN-MKKGTYPFSIEVGVVYRLTNSHRSLEKKEkNSNI 191
 
Name Accession Description Interval E-value
MP pfam01107
Viral movement protein (MP); This family includes a variety of movement proteins (MP)s. The MP ...
 43-242 4.62e-67

Viral movement protein (MP); This family includes a variety of movement proteins (MP)s. The MP is necessary for the initial cell-to-cell movement during the early stages of a viral infection. This movement is active, and it is known that the MP interacts with the plasmodesmata and possesses the ability to bind to RNA to achieve its role. This family also includes consists of virus movement proteins from the caulimovirus family. It has been suggested in cauliflower mosaic virus that these proteins mediated viral movement by modifying plasmodesmata and forming tubules in the channel that can accommodate the virus particles and references therein. The family contains a conserved DXR motif that is probably functionally important.


Pssm-ID: 279452  Cd Length: 191  Bit Score: 208.41  E-value: 4.62e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 140001      43 LKNISKTQ-LTLEKEKIFKMpnVLSQVMKKAFSRKNEILYCVSTKELsvdIHDATGKVYLPLITKEEINKRLSslkpeVR 121
Cdd:pfam01107   1 KKEIEETDfIDLTKSEIFYP--SMFKPLKKVFIRKNEKLFKVSTREI---IGDGDSLSELPLIDQEEIKKRLS-----KR 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 140001     122 KTMSMVHLGAVKILLKAQFRNGIDTPIKIALIDDRINSRRDCLLGAAKGNLAYGKFMFTVYPKFGISLNTQRLNQTLSLI 201
Cdd:pfam01107  71 KSYRYVHLGALQVVIKANFPNGIDTPGEIILYDNRLERRKEATIQSYKGNLAYGKFKFTVVPNYSISTQDANLDNSWSVL 150

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 140001     202 HDFENKNlMNKGDKVMTITYVVGYALTNSHHSIDYQS-NATI 242
Cdd:pfam01107 151 VNFENVN-MKKGTYPFSIEVGVVYRLTNSHRSLEKKEkNSNI 191
 
Name Accession Description Interval E-value
MP pfam01107
Viral movement protein (MP); This family includes a variety of movement proteins (MP)s. The MP ...
 43-242 4.62e-67

Viral movement protein (MP); This family includes a variety of movement proteins (MP)s. The MP is necessary for the initial cell-to-cell movement during the early stages of a viral infection. This movement is active, and it is known that the MP interacts with the plasmodesmata and possesses the ability to bind to RNA to achieve its role. This family also includes consists of virus movement proteins from the caulimovirus family. It has been suggested in cauliflower mosaic virus that these proteins mediated viral movement by modifying plasmodesmata and forming tubules in the channel that can accommodate the virus particles and references therein. The family contains a conserved DXR motif that is probably functionally important.


Pssm-ID: 279452  Cd Length: 191  Bit Score: 208.41  E-value: 4.62e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 140001      43 LKNISKTQ-LTLEKEKIFKMpnVLSQVMKKAFSRKNEILYCVSTKELsvdIHDATGKVYLPLITKEEINKRLSslkpeVR 121
Cdd:pfam01107   1 KKEIEETDfIDLTKSEIFYP--SMFKPLKKVFIRKNEKLFKVSTREI---IGDGDSLSELPLIDQEEIKKRLS-----KR 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 140001     122 KTMSMVHLGAVKILLKAQFRNGIDTPIKIALIDDRINSRRDCLLGAAKGNLAYGKFMFTVYPKFGISLNTQRLNQTLSLI 201
Cdd:pfam01107  71 KSYRYVHLGALQVVIKANFPNGIDTPGEIILYDNRLERRKEATIQSYKGNLAYGKFKFTVVPNYSISTQDANLDNSWSVL 150

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 140001     202 HDFENKNlMNKGDKVMTITYVVGYALTNSHHSIDYQS-NATI 242
Cdd:pfam01107 151 VNFENVN-MKKGTYPFSIEVGVVYRLTNSHRSLEKKEkNSNI 191
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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