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Conserved domains on  [gi|1398321186|gb|AWS34184.1|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Alophoixus ochraceus]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 2.88e-173

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 484.71  E-value: 2.88e-173
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186   1 MNPQAKLIFTLSLMLGTSITISSNHWAMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASALVLFSSTTNAWH 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  81 TGQWDITQLTHPASCLILTSAIAIKLGLAPFHFWFPEVLQGSPLTTGLLLSTIMKFPPMTLLLMTAHSLNPTLLTSMAIL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 161 STALGGWMGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLNFYLYTVMTATVFLTLNSTKVLKLSVLMTTWSKAPSL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 241 NAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDMVLAAMTISLLSLLSLFFYLRLAYCATITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1398321186 321 IHCSIAILTVVSSMLLPISPLLSSLV 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 2.88e-173

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 484.71  E-value: 2.88e-173
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186   1 MNPQAKLIFTLSLMLGTSITISSNHWAMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASALVLFSSTTNAWH 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  81 TGQWDITQLTHPASCLILTSAIAIKLGLAPFHFWFPEVLQGSPLTTGLLLSTIMKFPPMTLLLMTAHSLNPTLLTSMAIL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 161 STALGGWMGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLNFYLYTVMTATVFLTLNSTKVLKLSVLMTTWSKAPSL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 241 NAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDMVLAAMTISLLSLLSLFFYLRLAYCATITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1398321186 321 IHCSIAILTVVSSMLLPISPLLSSLV 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 15-298 1.70e-32

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 126.00  E-value: 1.70e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  15 LGTSITISSNHWAMAWAGLEINTLAILPLIS-KSHHPRSIEAATKYFLTQAAASALVLF--------SSTTN----AWHT 81
Cdd:COG1007   113 LGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygaTGSLNlagiAAAL 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  82 GQWDITQLTHPASCLILTSAIAIKLGLAPFHFWFPEVLQGSPLTTGLLLSTIMK----FPPMTLLLMTAHSLNP---TLL 154
Cdd:COG1007   193 AAGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPGLAAdwqLLL 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 155 TSMAILSTALGGWMGLNQTQTRKILAFSSISHLGWMAI-IISYSPK-LTLLNFYL--YTVMTATVFLTL-----NSTKVL 225
Cdd:COG1007   273 AVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLgLAAGTPLgVSAALFYLlaYLFMNLGAFAVIlllsrKGGEAE 352

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1398321186 226 KLSVLMTTWSKAPSLNAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDMVLAAMTISLLSLLSLFFYLRLAY 298
Cdd:COG1007   353 EIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 15-297 2.92e-26

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 108.50  E-value: 2.92e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  15 LGTSITISSNHWAMAWAGLEINTLAILPLIS-KSHHPRSIEAATKYFLTQAAASALVLFSSTTNAWHTGQWDITQLTHPA 93
Cdd:TIGR01770 113 LGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFL 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  94 SCLILT------------SAIAIKLGLAPFHFWFPEVLQGSPLTTGLLLSTIMK---FPPMTLLLMTA----HSLNPTLL 154
Cdd:TIGR01770 193 SNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYIlfgfSEAWQIFL 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 155 TSMAILSTALGGWMGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLN--FYL--YTVMTATVFLTLNSTKVLK---- 226
Cdd:TIGR01770 273 AIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKdewi 352

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1398321186 227 --LSVLMTTWSKAPSLNAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDMVLAAMTISLLSLLSLFFYLRLA 297
Cdd:TIGR01770 353 eyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 5.73e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 102.39  E-value: 5.73e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  23 SNHWAMAWAGLEINTLAILPLI-SKSHHPRSIEAATKYFLTQAAASALVLFSSTTNAWHTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  91 HPASCLILTSAIAIKLGLAPFHFWFPEVLQGSPLTTGLLLSTIMK------FPPMTLLLMTAHSLNPTLLTSMAILSTAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVkaggygLIRRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 165 GGWMGLNQTQTRKILAFSSISHLGWMAIIIS----YSPKLTLLNFYLYTVMTATVFLTLNS-----TKVLKLSVLMTTWS 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLCAGSviyrrVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1398321186 236 KAPSLNAMLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 2.88e-173

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 484.71  E-value: 2.88e-173
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186   1 MNPQAKLIFTLSLMLGTSITISSNHWAMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASALVLFSSTTNAWH 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  81 TGQWDITQLTHPASCLILTSAIAIKLGLAPFHFWFPEVLQGSPLTTGLLLSTIMKFPPMTLLLMTAHSLNPTLLTSMAIL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 161 STALGGWMGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLNFYLYTVMTATVFLTLNSTKVLKLSVLMTTWSKAPSL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 241 NAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDMVLAAMTISLLSLLSLFFYLRLAYCATITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1398321186 321 IHCSIAILTVVSSMLLPISPLLSSLV 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-346 2.65e-140

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 401.49  E-value: 2.65e-140
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186   1 MNPQAKLIFTLSLMLGTSITISSNHWAMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASALVLFSSTTNAWH 80
Cdd:MTH00135    1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  81 TGQWDITQLTHPASCLILTSAIAIKLGLAPFHFWFPEVLQGSPLTTGLLLSTIMKFPPMTLLLMTAHSlNPTLLTSMAIL 160
Cdd:MTH00135   81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 161 STALGGWMGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLNFYLYTVMTATVFLTLNSTKVLKLSVLMTTWSKAPSL 240
Cdd:MTH00135  160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 241 NAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDMVLAAMTISLLSLLSLFFYLRLAYCATITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00135  240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                         330       340
                  ....*....|....*....|....*..
gi 1398321186 321 -IHCSIAILTVVSSMLLPISPLLSSLV 346
Cdd:MTH00135  320 qLTLPLAISTTATLMLLPLTPAILALL 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-345 2.37e-139

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 398.91  E-value: 2.37e-139
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186   1 MNPQAKLIFTLSLMLGTSITISSNHWAMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASALVLFSSTTNAWH 80
Cdd:MTH00070    1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  81 TGQWDITQLTHPASCLILTSAIAIKLGLAPFHFWFPEVLQGSPLTTGLLLSTIMKFPPMTLLLMTAHSLNPTLLTSMAIL 160
Cdd:MTH00070   81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 161 STALGGWMGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLNFYLYTVMTATVFLTLNSTKVLKLSVLMTTWSKAPSL 240
Cdd:MTH00070  161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 241 NAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDMVLAAMTISLLSLLSLFFYLRLAYCATITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00070  241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                         330       340
                  ....*....|....*....|....*
gi 1398321186 321 IHCSIAILTVVSSMLLPISPLLSSL 345
Cdd:MTH00070  321 TNNLLSLTIILSLMLLPITPTILNL 345
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-345 4.56e-125

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 362.63  E-value: 4.56e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186   1 MNPQAKLIFTLSLMLGTSITISSNHWAMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASALVLFSSTTNAWH 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  81 TGQWDITQLTHPASCLILTSAIAIKLGLAPFHFWFPEVLQGSPLTTGLLLSTIMKFPPMTLLLMTAHSLNPTLLTSMAIL 160
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 161 STALGGWMGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLNFYLYTVMTATVFLTLNSTKVLKLSVLMTTWSKAPSL 240
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 241 NAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDMVLAAMTISLLSLLSLFFYLRLAYCATITLPPhTTNHMK-QWH-TN 318
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKmKWQfEN 319

                         330       340
                  ....*....|....*....|....*..
gi 1398321186 319 KPIHCSIAILTVVSSMLLPISPLLSSL 345
Cdd:MTH00105  320 TKPMTLLPTLIILSTMLLPLTPMLSIL 346
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-345 8.80e-101

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 300.73  E-value: 8.80e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186   1 MNPQAKLIFTLSLMLGTSITISSNHWAMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASALVLFSSTTNAWH 80
Cdd:MTH00200    1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  81 TGQWDITQLTHPASCLILTSAIAIKLGLAPFHFWFPEVLQGSPLTTGLLLSTIMKFPPMTLLLMTAHSLNPTLLTSMAIL 160
Cdd:MTH00200   81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 161 STALGGWMGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLNFYLYTVMTATVFLTLNSTKVLKLSVLMTTWSKAPSL 240
Cdd:MTH00200  161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 241 NAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDMVLAAMTISLLSLLSLFFYLRLAYCATITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00200  241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                         330       340
                  ....*....|....*....|....*
gi 1398321186 321 IHCSIAILTVVSSMLLPISPLLSSL 345
Cdd:MTH00200  321 SNLLVGLLLLLSILGLPLTPQLLFL 345
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-345 4.50e-89

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 271.03  E-value: 4.50e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186   1 MNPQAKLIFTLSLMLGTSITISSNHWAMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASALVLFSSTTNAWH 80
Cdd:MTH00041    1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  81 TGQWDITQLTHPASCLILTSAIAIKLGLAPFHFWFPEVLQGSPLTTGLLLSTIMKFPPMTLLLMTAHSLNPTLLTSMAIL 160
Cdd:MTH00041   81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 161 STALGGWMGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLNFYLYTVMTATVFLTLNSTKVLKLSVLMTTWSKAPSL 240
Cdd:MTH00041  161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 241 NAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDMVLAAMTISLLSLLSLFFYLRLAYCATITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00041  241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320

                         330       340
                  ....*....|....*....|....*....
gi 1398321186 321 IHCSIAILTVVSSM----LLPISPLLSSL 345
Cdd:MTH00041  321 ITVYGVILSILSSIsilgLLLIPLFLSFL 349
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-345 1.22e-64

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 207.75  E-value: 1.22e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186   1 MNPQAKLIFTLSLMLGTSITISSNHWAMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASALVLFSSTTNAWh 80
Cdd:MTH00160    2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  81 tgqwdITQLTHPASCLILTSAIAIKLGLAPFHFWFPEVLQGSPLTTGLLLSTIMKFPPMTLLLMTahsLNPTLLTSMAIL 160
Cdd:MTH00160   81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIIL 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 161 STALGGWMGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLNFYLYTVMTATVFLTLNSTKVLKLSVLMTTWSKAPSL 240
Cdd:MTH00160  153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 241 NAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDMVLAAMTISLLSLLSLFFYLRLAYCAtITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00160  233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSS-LMLNYNKNKWNLKKKKNKF 311

                         330       340
                  ....*....|....*....|....*
gi 1398321186 321 IHcSIAILTVVSSMLLPISPLLSSL 345
Cdd:MTH00160  312 SL-ILNFLSFISLFGLILSSLLFLL 335
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 7-340 2.44e-50

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 170.73  E-value: 2.44e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186   7 LIFTLSLMLGTSITISSNHWAMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASALVLFSSTTnawhtgQWDI 86
Cdd:MTH00011    9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM------MWSF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  87 TQLTHPASCLILTSAIAIKLGLAPFHFWFPEVLQGSPLTTGLLLSTIMKFPPMTLLLMTAHSLNPTLLTSMAILSTALGG 166
Cdd:MTH00011   83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 167 WMGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLNFYLYTVMTATVFLTLNSTKVLKLSVLMTTWSKAPSLNAMLML 246
Cdd:MTH00011  163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 247 TLLSLAGLPPLTGFLPKWLIIQELTKQDMVLAAMTISLLSLLSLFFYLRLAYcATITLPPHTTNhmkqwHTNKPIHCSIA 326
Cdd:MTH00011  243 MLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSS-----LKSAPYEPKTK 316

                         330
                  ....*....|....
gi 1398321186 327 ILTVVSSMLLPISP 340
Cdd:MTH00011  317 ILISMCTLSLGLIP 330
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-302 4.09e-49

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 167.37  E-value: 4.09e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186   5 AKLIFTLSLMLGTSITISSNHWAMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASALVLFSSTTNAWHTGQW 84
Cdd:MTH00144    5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  85 DITqlthpascLILTSAIAIKLGLAPFHFWFPEVLQGSPLTTGLLLSTIMKFPPMTLLLMTAHSLNP-TLLTSMAILSTA 163
Cdd:MTH00144   85 FSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSAL 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 164 LGGWMGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLNFYLYTVMTATVFLTLNSTKVLKLSVLmtTWSKAPSLNAM 243
Cdd:MTH00144  157 VGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDL--GSLKPSYKTGL 234

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 244 L-MLTLLSLAGLPPLTGFLPKWLIIQELTKQDMVLAAMTISLLSLLSLFFYLRLAYCATI 302
Cdd:MTH00144  235 SiISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-298 2.53e-40

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 144.43  E-value: 2.53e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186   8 IFTLSLMLGTSITISSNHWAMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASALVLFSSTTNAWHTgqwdit 87
Cdd:MTH00197    2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL------ 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  88 qLTHPASCLILTSAIAIKLGLAPFHFWFPEVLQGSPLTTGLLLSTIMKFPPMTLLLMTAHslNPTLLTSMAILSTALGGW 167
Cdd:MTH00197   76 -YLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGI 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 168 MGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLNFYLYTVMTATVFLTLNSTKVLKLSVlMTTWSKAPSLNAM-LML 246
Cdd:MTH00197  153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQ-QYSNPESMSSNLVfLGL 231

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1398321186 247 TLLSLAGLPPLTGFLPKWLIIQELTKQDMVLAAMTISLLSLLSLFFYLRLAY 298
Cdd:MTH00197  232 SFLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAY 283
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 15-298 1.70e-32

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 126.00  E-value: 1.70e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  15 LGTSITISSNHWAMAWAGLEINTLAILPLIS-KSHHPRSIEAATKYFLTQAAASALVLF--------SSTTN----AWHT 81
Cdd:COG1007   113 LGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygaTGSLNlagiAAAL 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  82 GQWDITQLTHPASCLILTSAIAIKLGLAPFHFWFPEVLQGSPLTTGLLLSTIMK----FPPMTLLLMTAHSLNP---TLL 154
Cdd:COG1007   193 AAGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPGLAAdwqLLL 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 155 TSMAILSTALGGWMGLNQTQTRKILAFSSISHLGWMAI-IISYSPK-LTLLNFYL--YTVMTATVFLTL-----NSTKVL 225
Cdd:COG1007   273 AVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLgLAAGTPLgVSAALFYLlaYLFMNLGAFAVIlllsrKGGEAE 352

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1398321186 226 KLSVLMTTWSKAPSLNAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDMVLAAMTISLLSLLSLFFYLRLAY 298
Cdd:COG1007   353 EIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 15-296 8.34e-30

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 117.05  E-value: 8.34e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  15 LGTSITISSNHWAMAWAGLEINTLAILPLI-SKSHHPRSIEAATKYFLTQAAASALVLFSSTTNAWHTGQWDI------- 86
Cdd:MTH00196    4 LGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLsyinlvl 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  87 ------TQLTHPASCLILTSAIAIKLGLAPFHFWFPEVLQGSPLTTGLLLSTIMKFPPMTLLLMTahSLNPTLLTSMAIL 160
Cdd:MTH00196   84 nsgqsfSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSI--GLNVNILLIGGLF 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 161 STALGGWMGLNQTQTRKILAFSSISHLGWMAIIISY----SPKLTLLNFYLYTVMTATVFLTLNSTKVLK-LSVLMTTWS 235
Cdd:MTH00196  162 SLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIgsfeSIQASLVYLFIYIIMSICVFSIILALNVYKnLIIEFSGLS 241

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1398321186 236 K-APSLNAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDMVLAAMTISLLSLLSLFFYLRL 296
Cdd:MTH00196  242 RrLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 8-267 5.51e-28

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 113.57  E-value: 5.51e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186   8 IFTLSLMLGTSITISSNHWAMAWAGLEINTLAILPLIS-KSHHPRSIEAATKYFLTQAAASALVLFSSTTNAWHTGQWDI 86
Cdd:MTH00199  101 ILILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSI 180

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  87 ----TQLTHPASCLILTSAIAIKLGLAPFHFWFPEVLQGSPLTTGLLLSTIMKFPPMTLLLMTAHSLNPTLLTsmAILST 162
Cdd:MTH00199  181 qginSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSI 258

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 163 ALGGWMGLNQTQTRKILAFSSISHLGW----MAIIISYSPKLTLLNFYLYTVMTATVF---LTLNSTKVLKLSVLMTTwS 235
Cdd:MTH00199  259 IYGAIGALNQTKIKRLLAYSGIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSICSFsiiLSLKLTKGLIVEVSGLS-R 337

                         250       260       270
                  ....*....|....*....|....*....|..
gi 1398321186 236 KAPSLNAMLMLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00199  338 KNPVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 15-297 2.92e-26

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 108.50  E-value: 2.92e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  15 LGTSITISSNHWAMAWAGLEINTLAILPLIS-KSHHPRSIEAATKYFLTQAAASALVLFSSTTNAWHTGQWDITQLTHPA 93
Cdd:TIGR01770 113 LGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFL 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  94 SCLILT------------SAIAIKLGLAPFHFWFPEVLQGSPLTTGLLLSTIMK---FPPMTLLLMTA----HSLNPTLL 154
Cdd:TIGR01770 193 SNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYIlfgfSEAWQIFL 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 155 TSMAILSTALGGWMGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLN--FYL--YTVMTATVFLTLNSTKVLK---- 226
Cdd:TIGR01770 273 AIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKdewi 352

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1398321186 227 --LSVLMTTWSKAPSLNAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDMVLAAMTISLLSLLSLFFYLRLA 297
Cdd:TIGR01770 353 eyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
9-296 1.80e-25

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 106.44  E-value: 1.80e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186   9 FTLSLM--LGTSITISSNHWAMAWAGLEINTLAILPLIS-KSHHPRSIEAATKYFLTQAAASALVL-------------- 71
Cdd:PRK05777  106 YLLVLFalLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLygmsllygatgsls 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  72 FSSTTNAWHTGQWDITQLThpASCLILTSAIAIKLGLAPFHFWFPEVLQGSPLTTGLLLSTIMK---FPPMTLLLMTA-H 147
Cdd:PRK05777  186 FAGIAKALADGSGNSLLLL--FGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaaFAVLLRLLVVAfG 263

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 148 SLNPT---LLTSMAILSTALGGWMGLNQTQTRKILAFSSISHLGWM--AIIISYSPKLTLLNFYL--YTVMTATVF--LT 218
Cdd:PRK05777  264 GLSEDwqqVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLlvGLAAGTAEGYSAVLFYLlaYLFMTLGAFgvIS 343

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 219 LNSTK---VLKLSVLMTTWSKAPSLNAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDMVLAAMTISLLSLLSLFFYLR 295
Cdd:PRK05777  344 LLRRKggeAESISDFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLR 423


                  .
gi 1398321186 296 L 296
Cdd:PRK05777  424 V 424
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 5.73e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 102.39  E-value: 5.73e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  23 SNHWAMAWAGLEINTLAILPLI-SKSHHPRSIEAATKYFLTQAAASALVLFSSTTNAWHTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  91 HPASCLILTSAIAIKLGLAPFHFWFPEVLQGSPLTTGLLLSTIMK------FPPMTLLLMTAHSLNPTLLTSMAILSTAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVkaggygLIRRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 165 GGWMGLNQTQTRKILAFSSISHLGWMAIIIS----YSPKLTLLNFYLYTVMTATVFLTLNS-----TKVLKLSVLMTTWS 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLCAGSviyrrVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1398321186 236 KAPSLNAMLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 3-267 1.58e-22

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 98.39  E-value: 1.58e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186   3 PQAKLIFTLSLMLGTSITISSNHWAMAWAGLEINTLAILPLISKSHHPRSI---------EAATKYFLTQAAASALVLFS 73
Cdd:MTH00198  187 PRSGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFG 266

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  74 STTNAWHTGQWDITQLTHPASC--------------LILTSAIAIKLGLAPFHFWFPEVLQGSPLTTGLLLSTIMKFppM 139
Cdd:MTH00198  267 CALYFGFTGNEGMLGTILSATLettnielrqgslgyLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--T 344

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 140 TLLLMTAHSLNPTLLTSMAILSTALGGWMGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLNFYLYTVM-------T 212
Cdd:MTH00198  345 VYILLTSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAVTylvsalaS 424

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1398321186 213 ATVFLTL------------------NSTKVLKLSVLMTTWSKAPSLNAMLMLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00198  425 FTVICTLeefgtrtptsrqrdgsfgNYNLVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 9-282 9.51e-19

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 86.74  E-value: 9.51e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186   9 FTLSLMLGTSITISSNHWAMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASALVLFSSTTNAWHTGQWDITQ 88
Cdd:COG0651   112 LFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMAD 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  89 LTHPAS----------CLILTSAIAIKLGLAPFHFWFPEVLQGSPLTTGLLLSTIMKFPPM-----TLLLMTAHSLNP-- 151
Cdd:COG0651   192 LAARLAeldpglllaaFALLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLTKVGVyailrVLTLLFGADPALfl 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 152 -TLLTSMAILSTALGGWMGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLNFYLY----TVMTATVFLT----LNST 222
Cdd:COG0651   272 gTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHllnhALAKALLFLAagaiERAT 351

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 223 KVLKLSVLMTTWSKAPSLNAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDMVLAAMTI 282
Cdd:COG0651   352 GTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVL 411
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-263 8.86e-17

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 81.25  E-value: 8.86e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  50 PRSIEAATKYFLTQAAASALVLF-SSTTNAWHTGQwdiTQLTHPASCLI-------------LTSAIAIKLGLAPFHFWF 115
Cdd:PRK02504  157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGS---TQLSAIALALItspslglalalvfVIAGIAFKISAVPFHQWT 233

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 116 PEVLQGSPLTTGLLLSTIMK---FPPMTLLLMTAHSLNPT----LLTSMAILSTALGGWMGLNQTQTRKILAFSSISHLG 188
Cdd:PRK02504  234 PDVYEGSPTPVVAFLSVGSKaagFALAIRLLVTAFPSFDEqwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAG 313

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 189 WMAIII------SYSPKLTLLNFYLYTVMTATVFLTLNS--TKVLKLSVLMTTWSKAPSLNAMLMLTLLSLAGLPPLTGF 260
Cdd:PRK02504  314 FVMIGLvagteaGYASMVFYLLAYLFMNLGAFACVILFSlrTGTDQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGF 393


                  ...
gi 1398321186 261 LPK 263
Cdd:PRK02504  394 FGK 396
ndhB CHL00049
NADH dehydrogenase subunit 2
 7-263 2.45e-15

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 76.58  E-value: 2.45e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186   7 LIFTLSLMLGTSITISSNHWAMAWAGLEINTLAILPLISKSHHP-RSIEAATKYFLTQAAASALVL--FSST--TNAWHT 81
Cdd:CHL00049  114 LLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVygFSWLygLSGGEI 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  82 GQWDI------TQLTHPASCLI----LTSAIAIKLGLAPFHFWFPEVLQGSPLTTGLLLSTIMKFPPMTLLLMTAHSLNP 151
Cdd:CHL00049  194 ELQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASALATRIFDIPFY 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 152 T-------LLTSMAILSTALGGWMGLNQTQTRKILAFSSISHLGWMAI-IIS------YSPKLTLLNFYLYTVMTATVFL 217
Cdd:CHL00049  274 FssnewhlLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIgIIVgdsndgYASMITYMLFYIFMNLGTFACI 353

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1398321186 218 TLNSTK-----VLKLSVLMTtwsKAPSLNAMLMLTLLSLAGLPPLTGFLPK 263
Cdd:CHL00049  354 VLFGLRtgtdnIRDYAGLYT---KDPFLALSLALCLLSLGGIPPLAGFFGK 401
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-279 1.37e-10

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 62.02  E-value: 1.37e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  49 HPRSIEAATKYFLTQAAASALVLFSSTTNAWHTGQW--DITQLTH-----PASCLILTS---AIAIKLGLAPFHFWFPEV 118
Cdd:COG1008   156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAaplplTAQLLLFLAffiAFAVKVPMFPFHTWLPDA 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 119 LQGSPLTTGLLLSTIM---------KFPpMTLLLMTAHSLNPTLLTsMAILSTALGGWMGLNQTQTRKILAFSSISHLGW 189
Cdd:COG1008   236 HVEAPTAGSVLLAGVLlkmggygllRFA-LPLFPEASAYFAPLLAA-LGVIGIIYGALVALAQTDLKRLIAYSSVSHMGF 313

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 190 MAI-IISYSPK------LTLLNFylyTVMTATVFLTL----NSTKVLKLSVLMTTWSKAPSLNAMLMLTLLSLAGLPPLT 258
Cdd:COG1008   314 VLLgIFALNPLglqgavLQMVSH---GLITAALFLLVgvlyDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTS 390

                         250       260
                  ....*....|....*....|.
gi 1398321186 259 GFLPKWLIIQELTKQDMVLAA 279
Cdd:COG1008   391 GFVGEFLVLLGAFQVNPWLAI 411
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-298 1.14e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 59.51  E-value: 1.14e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  33 LEINTLAILPLISKSHHPRSIEAATKYFLTQAAASALVLFSSTTNAWHTGQWDITQLTH--PASCLILT------SAIAI 104
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAGalAENPTVVTafgfvlLALAL 214

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 105 KLGLAPFHFWFPEVLQG-SPLTTGLLLSTIMKFPPMTLLLMTAHSLNP---------TLLTSMAILSTALGGWMGLNQTQ 174
Cdd:PRK08375  215 KAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVYALIRIYFTVFGGdfrfalglgWLLAVLALLSMLVGSLAALGQDD 294

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 175 TRKILAFSSISHLGWMAIIISYSPKLTLLN--FYL--YTVMTATVFL-------TLNSTKVLKLSVLMttwSKAPSLNAM 243
Cdd:PRK08375  295 VKRVLAYSTVSQMGYILLGLALLTPLALAAglLHLlhHALMKGALFLaagaievTYGTRRLSELSGLG---RRMPLTAAA 371

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1398321186 244 LMLTLLSLAGLPPLTGFLPKWLIIQELTKQDMVLAAMTISLLSLLSLFFYLRLAY 298
Cdd:PRK08375  372 FAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 1.17e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 59.34  E-value: 1.17e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  33 LEINTLAILPLIS-KSHHPRSIEAATKYFLTQAAASALVLFSSttnAWHTGQWDITQLTHPASCL-------------IL 98
Cdd:PRK08376  150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTLNMAYLAVKMsenptvvakialaLF 226

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  99 TSAIAIKLGLAPFHFWFPEVLQGSP--LTTGLLLSTIMKFPPMTLLLMTAHSLNPTLLTS------MAILSTALGGWMGL 170
Cdd:PRK08376  227 IAGLAMKSGAVPVHMWLPDAYPAAPssISAMLLVIKQAGLYALARVLFSIYGPAINLATVgwviiiLGCLTMFVGVAMAV 306

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 171 NQTQTRKILAFSSISHLGWM------AIIISYSPKLT----------LLNFYLYTVMTATVFLT----LNSTKVLKLSVL 230
Cdd:PRK08376  307 VQKDVKRLLAYHSVSQIGYMllglgvGLAALGDPAMAsygeialaggIYHIVNHALYKALLFLTagavIYETGTRNLNEL 386

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1398321186 231 MTTWSKAPSLNAMLMLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK08376  387 GGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 2-280 9.59e-09

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 56.54  E-value: 9.59e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186   2 NPQAKLIFTLSLMLGTSITISSNHWAMAWAGLEINTLAILPLISKSHHpRSIEAATKYFLTQAAASALVLFSSTTNAWHT 81
Cdd:PRK08668   96 NDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKT 174

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  82 GQWDIT-------QLTHPASCLI----LTSAIAIKLGLAPFHFWFPEVLQGSPLTTGLLLS-------------TIMKFP 137
Cdd:PRK08668  175 GTFDFAdisqgliNDTSTGFALIvflfLLAFGVAKAGIFPLHVWAPDAYSEAPQSFSAVLSgqlsklgaygfllVLYVLP 254

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 138 PMTLLLMTAHSLNPTLLTSMAI----LSTALGGWMGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTL-------LNFY 206
Cdd:PRK08668  255 GTKLFSEFGTYRGVPLFNYILAwlgnISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFagglfhvFNHA 334

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1398321186 207 LYTVM----TATVFLTLNSTKVLKLSVLMttwSKAPSLNAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDMVLAAM 280
Cdd:PRK08668  335 LFKGLffliFAAVIYRTGTTKISEMGGLI---EKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAF 409
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 13-279 7.26e-08

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 53.78  E-value: 7.26e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  13 LMLGTSITISSNHWAMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASALVLFSS------------------ 74
Cdd:PRK06458  117 FLFTMLLALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTilvyanaatvmgdgemai 196

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  75 --TTNAWHTGQWDiTQLTHPASCLILTsAIAIKLGLAPFHFWFPEVLQGSP-----LTTGLLLST----IMKFppMTLLL 143
Cdd:PRK06458  197 lwTELLKHASLLD-PTLMKLAFVFLLI-GFGTKVGLFPMHAWLPDAHSEAPspvsaLLSGVLLNValyaVLRY--YILID 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 144 MTAHSLNP-TLLTSMAILSTALGGWMGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLNFYLYTVM-----TATVFL 217
Cdd:PRK06458  273 AAIGSDFPgRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNhsltkSAIFFA 352

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1398321186 218 TLNSTKVL---KLSVLMTTWSKAPSLNAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDMVLAA 279
Cdd:PRK06458  353 SGNVLQKYgtrDINVIRGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLILTAGLARGPLLIA 417
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
34-268 1.01e-07

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 53.50  E-value: 1.01e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  34 EINTLAILPLISKSHHPRSIEAATKYFLTQAAASALVLFSSTTNAWHTGQWDITQ-----LTHPASCLILTSAIAIKLGL 108
Cdd:PRK06277  130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDihnalLVNPTSPVIYGGLLLLIFGL 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 109 A------PFHFWFPEVLQGSPLTTGLLLSTIMKFPPMTLLLMTAHSLNP--------TLLTSMAILSTALGGWMGLNQTQ 174
Cdd:PRK06277  210 LygsglpPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMLVIFKLFGGlsyfpsaqGVLIALSVLAMVFGVVMALLQTD 289

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 175 TRKILAFSSISHLGWMAIIISYSPKLTL-------LNFYLYTVMTATVF-LTLNSTKVLKLSVLMTTWSKAPSLNAMLML 246
Cdd:PRK06277  290 YKRLLAYHAISQGGYVAAGLALGTPLGIvagifhaINHVIYKSALFLGAgIVSYRTKTSNLRKLGGLLPVMPVVAFMVLC 369

                         250       260
                  ....*....|....*....|..
gi 1398321186 247 TLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK06277  370 AKLAISGVPPFNGFQSKLMLAQ 391
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-268 1.49e-07

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 52.63  E-value: 1.49e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  50 PRSIEAATKYFLTQAAASALVLFSSTTNAWHTGQW----DITQLTHPASC-----LILTSAIAIKLGLAPFHFWFPEV-- 118
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGTfdllELLNLPLPFGVqtwlfLAFFIAFAVKVPLFPLHTWLPDAhv 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 119 ---LQGSPLTTGLLLST----IMKFpPMTLLLMTAHSLNPtLLTSMAILSTALGGWMGLNQTQTRKILAFSSISHLGWMA 191
Cdd:TIGR01972 232 eapTAGSVILAGVLLKMgtygFLRF-NLPLFPDASLYFAP-VLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVL 309

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 192 IIISYSPKLTLLNFYLYTV----MTATVFLTL----NSTKVLKLSVLMTTWSKAPSLNAMLMLTLLSLAGLPPLTGFLPK 263
Cdd:TIGR01972 310 LGIFSFNELGISGAVFQMIshglITAALFLLVgvlyERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGE 389


                  ....*
gi 1398321186 264 WLIIQ 268
Cdd:TIGR01972 390 FLILL 394
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 291-340 1.55e-07

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 47.25  E-value: 1.55e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1398321186 291 FFYLRLAYCATITLPPHTTNHMKQWHTNKPIHC-SIAILTVVSSMLLPISP 340
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTlLLPTLTTLSILLLPLTP 51
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-219 1.57e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 49.75  E-value: 1.57e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  13 LMLGTSITISSNHWAMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAA------SALVLFSSTTNAWHTGQWDI 86
Cdd:PRK08676  111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  87 TQLTHPA----------SCLILTSAIAIKLGLAPFHFWFPEVLQGSP-LTTGLLLSTIMKFPPMTLLLMTA-------HS 148
Cdd:PRK08676  191 TELAAHAsllspsvlgaSFLFIFIGFLAKSGLVPFHTWLPAAYAKAPsVVSALLSGTVLNIGIYGILRLSAllrqsgaAE 270

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1398321186 149 LNPTLLTSMAILSTALGGWMGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLNFYLYTVMTATVFLTL 219
Cdd:PRK08676  271 QFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKSGL 341
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 96-263 6.53e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 48.00  E-value: 6.53e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  96 LILTSAIAiKLGLAPFHFWFPEVLQGSPLTTGLLLSTIM---------KFPPMtllLMTAHSLNPTLLTsMAILSTALGG 166
Cdd:PRK12644  208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMvkagiylvaRLAPG---FADVPVWRPTVLV-LGLATMLLGG 282

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 167 WMGLNQTQTRKILAFSSISHLGWMAIIISYSPK------LTLLnfYLYTVMTATVFLTL----NSTKVLKLSVLMTTWSK 236
Cdd:PRK12644  283 WRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRdaalagLAML--LAHALFKAALFLVVgiidHSTGTRDIRKLSGLGRR 360

                         170       180
                  ....*....|....*....|....*..
gi 1398321186 237 APSLNAMLMLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12644  361 QPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-271 7.87e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 47.25  E-value: 7.87e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  33 LEINTLAILPLISKSHHPRSIEAATKYFLTQAAASALVLFSSTTNAWHTGQWDITQLTH--PASCLILTSAIAIKLGLAP 110
Cdd:PRK07234  123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFV 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 111 FHFWFPEVLQGSPLTTGLLLSTIMK----FPPMTLLLMtaHSLNPTLLTSMAILSTALGGWMGLNQTQTRKILAFSSISH 186
Cdd:PRK07234  203 SGLWLPLTHSEAEPPVSALLSGVVVkagvFPLVRCALD--VPGLDLIVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQ 280

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 187 LGWMAIIISYSPKLTLLnfylYTVMTATVFLTLNSTKVLKLSVLMTTwSKAPSLNAMLMLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK07234  281 LGFILAAPLVGGLYALA----HGLVKSTLFLCAGALPSRNFTELISQ-MLGIGKWIPLTMASFSIAGFPLLAGFVSKVLT 355


                  ....*
gi 1398321186 267 IQELT 271
Cdd:PRK07234  356 LKNLL 360
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 7-270 1.04e-05

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 47.07  E-value: 1.04e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186   7 LIFTLSlMLGtsITISSNHWAMaWAGLEINTLAILPLISKSHH-PRSIEAATKYFLTQAA------ASALVLFssttnaW 79
Cdd:COG1009   118 LLFMAA-MLG--LVLSDNLLLL-FVFWELVGLCSYLLIGFWYEkPSARRAARKAFLVTRVgdlgllLGILLLG------A 187

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  80 HTGQWDITQLTHPASCLI---LTSAIAI--------KLGLAPFHFWFPEVLQG----SPL-------TTGLLLstIMKFP 137
Cdd:COG1009   188 IAGTLNFSELLAAAPTILsspLLTLILLllllgafgKSAQFPLHFWLPDAMEGptpvSALlhaatmvKAGVYL--LARLS 265

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 138 PMTlllmtahSLNPTLLTSMAI--LSTAL-GGWMGLNQTQTRKILAFSSISHLGWMAIII---SYSPKLTLLnfylytvM 211
Cdd:COG1009   266 PLF-------ALSPVWLTVVAIigAITALfAALIALAQTDIKRVLAYSTVSQLGYMFLALgvgAYVAALFHL-------L 331

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1398321186 212 T-----ATVFL-------TLNSTKVLKLSVLmttWSKAPSLNAMLMLTLLSLAGLPPLTGFLPKWLIIQEL 270
Cdd:COG1009   332 ThaffkALLFLgagsvihATGTRDIRKMGGL---RKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAA 399
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
55-268 1.21e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 47.01  E-value: 1.21e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  55 AATKYFLTQAAASALVLFSSTTNAWHTGQWD------ITQLTHPASCLILTSAI----AIKLGLAPFHFWFPEV-LQGSP 123
Cdd:PRK07363  158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSfdydaiSTQNLSLNTQLILLTGLllgfGIKIPLVPLHTWLPDAyTEASP 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 124 LTTGLLLSTIMKFPPMTLLLM-------TAHSLNPTLLTSMAIlSTALGGWMGLNQTQTRKILAFSSISHLGW------- 189
Cdd:PRK07363  238 AVAILLGGVLAKLGTYGLLRFglqlfpqTWSLVAPGLAIIGTI-SVIYGALSAIAQKDIKRMVAYSSIGHMGYilvaaaa 316

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 190 ---------MAIIISYSPKLTLLnFYLYTVMTATVfltlnSTKVL-KLSVLMTTWSKAPSLNAMLMLTLLSLAGLPPLTG 259
Cdd:PRK07363  317 gtqlsllgaVAQMISHGLILALL-FHLVGIVERKV-----GTRDLdVLNGLMNPIRGLPLTSALLVLAGMASAGIPGLVG 390


                  ....*....
gi 1398321186 260 FLPKWLIIQ 268
Cdd:PRK07363  391 FVAEFIVFQ 399
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 105-268 1.86e-05

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 46.49  E-value: 1.86e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 105 KLGLapfHFWFPEVLQGSPLTTGLLLSTIMKFPPMTLL-----LMTAHSLNPTLLTSMAILSTALGGWMGLNQTQTRKIL 179
Cdd:MTH00032  241 QLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMirsfpLFEKAPLTLLIITIFGALTAFFAATVGLVQNDLKKVI 317

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 180 AFSSISHLGWMAIIISY--SPKLTLLNFYLYTVMTATVFL---------TLNSTKVLKLSVLMTTwskAPSLNAMLMLTL 248
Cdd:MTH00032  318 AYSTCSQLGYMVLIIGIegSHNVGLFHLVNHAFFKALLFLsagsvihstTVDEQDMRKMGGLIHS---IPFTYTMMLIGS 394

                         170       180
                  ....*....|....*....|
gi 1398321186 249 LSLAGLPPLTGFLPKWLIIQ 268
Cdd:MTH00032  395 FSIMGLPYLTGFYSKDLILE 414
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
34-282 2.09e-05

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 46.10  E-value: 2.09e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  34 EINTLAILPLISKSHHPRSIEAATKYFLTQAAASALVLFS--------STTNAWHTGQwDITQLTHPASCLILTS----A 101
Cdd:PRK12663  138 EVMLIASFVLITLGQEREQLRGAIKYVVLNLIGSWLFLLGigllygtfGTLNMAHIAM-RLNDMGDTATLTTIALlfllA 216

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 102 IAIKLGLAPFhFWFPEVLQGSPLTTGLLLSTIMK-------FPPMTLLLMTAHSLNPTLLTSMAILSTALGGWMGLNQTQ 174
Cdd:PRK12663  217 FGMKAALFPF-MWLPAAYHTPNTEVAALFAALLTkvgiyalIRVFTLLFPQERELLHPLLATMAAITMVIGALGALAYKD 295

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 175 TRKILAFSSISHLGWMAIIISYSPKLTLLN--FYLY---TVMTAtVFLTLNSTKVL----KLSVLMTTWSKAPSLNAMLM 245
Cdd:PRK12663  296 IRRIAGYQVISSIGFILLGLALGTPAGINGaiFYLVhdmVVKTA-LFLIAGSLVRLtgyrSLQYLGGLYRKEPLFGALFL 374

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1398321186 246 LTLLSLAGLPPLTGFLPKWLIIQ-ELTKQDMVLAAMTI 282
Cdd:PRK12663  375 ILIFAIGGLPPFSGFWGKVLLVQgALDNGAYILLALML 412
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-263 3.22e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 45.59  E-value: 3.22e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  48 HHPRSIEAATKYFLTQAAASALVLFSSTTNAWHTGQWDITQLTHPASC--------LILTSAIAIKLGLA------PFHF 113
Cdd:PRK12649  156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSELienikghpLFLITLILIFIGAAaksaqgPFYI 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 114 WFPEVLQGSPLTTGLLLSTIMKFPPMTLLLMTAHSLNPT-----LLTSMAILSTALGGWMGLNQTQTRKILAFSSISHLG 188
Cdd:PRK12649  236 WLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQLA 315

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 189 WMAIIISYSPK------LTLLNFYL--YTVMTATVFLTLN-------STKVLKLSVLMttwSKAPSLNAMLMLTLLSLAG 253
Cdd:PRK12649  316 YLMTMYGYTTYhepglgVAAATFHLlnHATFKACLFLVAGivaheaaTRDIRKLGGLR---KEMPITFIVASIAALAMAG 392

                         250
                  ....*....|
gi 1398321186 254 LPPLTGFLPK 263
Cdd:PRK12649  393 IPPLNGFLSK 402
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 110-266 4.13e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 45.30  E-value: 4.13e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 110 PFHFWFPEVLQGSPLTTGLLLSTIMKFPPMTLLLMTAHSLNPT-----LLTSMAILSTALGGWMGLNQTQTRKILAFSSI 184
Cdd:PRK12647  213 PFHFWLPNAMEAPTPVSAYLHSATMVKAGIYLLARLNPVLGGTplwqtILPLFGGLTMLTGALLAVRQTDLKLILAYSTV 292

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 185 SHLGWMAIIISYSPKLTLLNFYLYTVM----TATVFLTL----NSTKVLKLSVLMTTWSKAPSLNAMLMLTLLSLAGLPP 256
Cdd:PRK12647  293 SALGTLVMLLGLGSELAIKAAVLFLVAhslyKGALFMVAgiidHETGTRDITKLGGLRRAMPITAAAALLAALSMAGLPP 372

                         170
                  ....*....|
gi 1398321186 257 LTGFLPKWLI 266
Cdd:PRK12647  373 LFGFLAKELI 382
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 96-268 4.57e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 44.96  E-value: 4.57e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  96 LILTSAIAIKLGLAPFHFWFPEVLQGSP---------LTTGLLLSTIMKfppMTLLLMTAHSLNpTLLTSMAILSTALGG 166
Cdd:PRK12665  213 AVLLVAFGIKAAVFPLSFWLPDSYPTAPapvtavfagLLTKVGVYAIIR---THTLLFPGGGLD-TLLMVVALLTMVVGI 288

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 167 WMGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLNFYLYTVMTATVFLTL-----------NSTKVLKLSVLMTTws 235
Cdd:PRK12665  289 LGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVAHHITVQTTLflvvglierqaGSSSLRRLGGLAKA-- 366

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1398321186 236 kAPSLNAMLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK12665  367 -SPLLAVLFFVPALNLGGIPPFSGFIGKVALLE 398
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 2-276 6.89e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 44.42  E-value: 6.89e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186   2 NPQAKLIFTLSLMLGTSITISSNHWAMaWAGLEINTLAILPLISKSHHPRSIEAATKYFLTqAAASALVLF--------S 73
Cdd:PRK06589  115 SSRFLFFFNLTILIGVLIALSSDLFTM-FVCYELLTISTAFLIGHTRNNISLSGGYKYLKI-LMISALLLFlpaviliyT 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  74 STTNAWHTGQWDITQLTHPASCLILTSAIAiKLGLAPFHFWFPEVLQGSPLTTGLLLSTIM----KFPPMTLLLMTAHSL 149
Cdd:PRK06589  193 KTGNLDFVSGGLFSKNQSIILLLMFIYGIA-KTAIFPVHSWLPAAMVAHYPVSALLHAVIVvktgLFCIYKILLYIFGLS 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 150 NPTLLTSM-------AILSTALGGWMGLNQTQTRKILAFSSISHLGWM----AIIISYSPKLTLLNFYLYTVMTATVFLT 218
Cdd:PRK06589  272 YLQRIFAEfnwlifiPIVSIFYSSLKALKTDNIKKILAYSTISQLSLAllsaFILTPKALGAAILHLVSHSFAKICLFYS 351

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1398321186 219 LNSTKVLK----LSVLMTTWSKAPSLNAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDMV 276
Cdd:PRK06589  352 MGSIYSLKkedqVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQP 413
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
55-266 7.29e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 44.31  E-value: 7.29e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  55 AATKYFLTQAAASALVLFSSTTNAWHTGQWDI---TQLTHP---ASCLILTSAI----AIKLGLAPFHFWFPEV-LQGSP 123
Cdd:PRK06473  158 AATKFLLYTAISGILILVSFLGLVWLSGASSFdyePLRSHTlplSTQLLLLAPIlvgfGIKIPLVPFHTWLPDAhVEAST 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 124 LTTGLLLSTIMKFPPMTLL------LMTAHSLNPTLLTSMAILSTALGGWMGLNQTQTRKILAFSSISHLGWMAIIISYS 197
Cdd:PRK06473  238 PVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAAA 317

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 198 PKLTLLNFYLYTV----MTATVFLTL-------NSTKVLKLSVLMTTWSKAPSLNAMLMLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK06473  318 TPLSILAAVFQMIshglISALLFLLVgvvykktGSRDVDVLRGLLNPERGLPITGSLMILGVMASAGIPGMVGFIAEFLV 397
PRK12650 PRK12650
DUF4040 family protein;
98-263 8.47e-05

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 44.65  E-value: 8.47e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  98 LTSAIAIKLGLA--------PFHFWFPEVLQG-SPLTTGLLLSTIMKFPPMTLLLMTA-HSLNPT---LLTSMAILSTAL 164
Cdd:PRK12650  206 LTTVVAVLIAVAaftksaqfPFHFWLPEAMAAiTPVSAFLHAAAVVKAGIYLLLRFSPvFHDVAVwnwLLIIVGMITALM 285

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 165 GGWMGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLNFYLYTVMTA----TVFLTL----NSTKVLKLSVLMTTWSK 236
Cdd:PRK12650  286 GAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTLAHAlfksSLFMLIgvvdHQAGTRDIRRLGSLWRR 365

                         170       180
                  ....*....|....*....|....*..
gi 1398321186 237 APSLNAMLMLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12650  366 MPFTFVSVTIAALSMAAVPPLFGFVSK 392
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
 15-280 1.55e-04

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 43.63  E-value: 1.55e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  15 LGTSITISSNHWAMAWAGLEINTLA---ILPLISKSHHPRSIEAATKYFLTqaaasALVLFSSTTNAWHTGQWDITQLTH 91
Cdd:PRK06459   83 LGMAIVLTSDNYLLFLAGWEIMTIPsyvAIALTKKNKRPAFVFMAFGELST-----VLILAGFAWAFIISGTTNFSYLPS 157

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  92 PASCLILTSAIAIKLGLAPFHF--WFPEVLQGSPLTTGLLLSTIMKFPPMTLLLMTAHSLNPT-------LLTSMAILST 162
Cdd:PRK06459  158 PVPLILASFGFIIKMGMMPFLVseWLPIAHGNAPSNFSAILSATMTLMGVYGILKMTILTQTIpigyfglTILAIGAFSI 237

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 163 ALGGWMGLNQTQTRKILAFSSISHLGWM-----AIIISYSPKLTLLNFYLYTVMTATVFLTLNSTKVLKLSVLMT----T 233
Cdd:PRK06459  238 LFGALYAYVSENVKGLLAFSTIENNGAIlvalgLYMVTKQLITSIEHFSLITVILYSFAHSVAKTGLFLSSGLQEkqsiT 317

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 1398321186 234 WSKAPSLNAM---LMLTLLSLAGLPPLTGFLPKWLIIQELTKQDMVLAAM 280
Cdd:PRK06459  318 YSKKIRNRWIelgLTLLASSLSGLLPNIGGVASWLLLESLFMFAYVLHNV 367
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 55-270 1.72e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 43.18  E-value: 1.72e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  55 AATKYFLTQAAASALVLFSSTTNAWHTGQWDITQLTHPA-----SCLILTSAIAIKLGLAPFHFWFPEVLQGSPLTTGLL 129
Cdd:PRK08667  163 AGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAgilslVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSAL 242

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 130 LSTIM-KFPPMTLLLMTAHSLNPTLLTSMAIL-----STALGGWMGLNQTQTRKILAFSSISHLG--------WMAIIIS 195
Cdd:PRK08667  243 MSGVMlKVAVYGLVRFLMDVLSPELWWGVLILlagsiSALLGVIYALKEHDLKGLLAYSSIENIGiilmgiglYVIFGVY 322

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 196 YSPKLTLLNF-------YLYTVMTATVFLTLNS----TKVLKLSVLMTTWSKAPSLNAMLMLTLLSLAGLPPLTGFLPKW 264
Cdd:PRK08667  323 GLDTLALLALggalfhsLNHALFKSLLFLTAGSvvhaTGTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASEL 402


                  ....*.
gi 1398321186 265 LIIQEL 270
Cdd:PRK08667  403 LLYESF 408
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 152-267 2.28e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 42.80  E-value: 2.28e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 152 TLLTSMAILSTALGGWMGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLNFYLYTV----MTATVFLTLNSTK---- 223
Cdd:PRK12662  280 NVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVnhsiVKSALFMVSGSISyhfg 359

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1398321186 224 VLKLSVLMTTWSKAPSLNAMLMLTLLSLAGLPPLTGFLPKWLII 267
Cdd:PRK12662  360 TTKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 101-267 2.29e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 42.99  E-value: 2.29e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 101 AIAIKLGLAPFHFWFPEVLQGSPLTTGLLLSTI-----------MKFPpmtLLLMTAHSLNPTLLtSMAILSTALGGWMG 169
Cdd:MTH00226  239 AMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAGIllklggyglvrLSWP---ILPLGAQNLAPAVI-AMGIVGIVYGSFAT 314

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 170 LNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLNFYLYTV----------MTATVFLTLNSTKVLK----LSVLMTTWS 235
Cdd:MTH00226  315 CRQIDVKRLVAYSSVAHMGLVSITLVTHDIIGLTGSIFIMLahgivssllfILVTILYDRHHTRLIKyyrgLSITMPIWG 394

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1398321186 236 kapslnAMLMLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00226  395 ------TIMIVTSLANVAVPPSGNFIGEYLSI 420
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 103-268 4.85e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 41.86  E-value: 4.85e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 103 AIKLGLAPFHFWFPEVLQGSP---------LTTGLLLSTIMKFppMTLLLMTAHSLNPTLLTSMAILSTALGGWMGLNQT 173
Cdd:PRK07691  220 ATKAGLFPLYFWLPGSYYAPPiaiaalfgaLLTKVGVYAIART--FTLFFSHDTSFTHYLILILALLTIIFGVIGAVAYF 297

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 174 QTRKILAFSSISHLGWMAIIISYSPKLTLLNFYLYTV----------MTATVFLTLNSTKVL-KLSVLMTTWskaPSLNA 242
Cdd:PRK07691  298 DIKKIIIYNIMIAVGVILVGVAMMTESGMIGAIYYLIhdmivkaalfLLIGIMIKITGTTDLkKMGGLIKRY---PVLGW 374

                         170       180
                  ....*....|....*....|....*.
gi 1398321186 243 MLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK07691  375 MFFIAALSLAGIPPLSGFYGKFFIVE 400
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-267 7.17e-04

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 41.34  E-value: 7.17e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  50 PRSIEAATKYFLTQAAASALVLFS----STTNAWHTGQWDITQL------THPASCLILT--SAIAIKLGLAPFHFWFPE 117
Cdd:PRK05846  157 KNRIYAATKFFLYTLLGSLLMLVAiiylVVVYYNATGTFDIADLlnlplpPGVQYWLFLAffIAFAVKMPMFPLHTWLPD 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 118 VLQ-----GSPLTTGLLLST----IMKFPpMTLLLMTAHSLNPTLLTsMAILSTALGGWMGLNQTQTRKILAFSSISHLG 188
Cdd:PRK05846  237 AHVqaptaGSVLLAGILLKMgaygLLRFS-LPLFPDASHEFAPIIIT-LGVIAIIYGALVALAQTDIKKLIAYSSISHMG 314

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 189 W--MAIIISYSPKLTLLNFYL--YTVMTATVFLTL----NSTKVLKLSVLMTTWSKAPSLNAMLMLTLLSLAGLPPLTGF 260
Cdd:PRK05846  315 FvtLGIFAGNQLGIQGAIFQMisHGLSSAALFLLVgvlyDRLHTRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTSGF 394


                  ....*..
gi 1398321186 261 LPKWLII 267
Cdd:PRK05846  395 VGEFLIL 401
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-195 1.35e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 40.40  E-value: 1.35e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  55 AATKYFLTQAAASALVLFSSTTNAWHTGQ--WDITQLTH---PASCLILTS-----AIAIKLGLAPFHFWFPEV-----L 119
Cdd:PRK12561  138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGAksyPLALELLLYagfliAFGVKLPIFPLHTWLPDAhgeasA 217

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 120 QGSPLTTGLLLST----IMKFPpmTLLLMTAHSLNPTLLTSMAILSTALGGWMGLNQTQTRKILAFSSISHLGWMAIIIS 195
Cdd:PRK12561  218 PVSMILAGVLLKMggyaLIRFN--VQMLPDAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGIA 295
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 157-267 3.91e-03

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 38.80  E-value: 3.91e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 157 MAILSTALGGWMGLNQTQTRKILAFSSISHLGWMAIIISYS---PKLTLLNFYLYTVMTATV----FLTLN----STKVL 225
Cdd:PRK06525  278 MAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGYMFFGLSLAilgSRLALEGSIAYIFNHAFAkslfFLVAGalsySCGTR 357

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1398321186 226 KLSVLMTTWSKAPSLNAMLMLTLLSLAGLPPLTGFLPKWLII 267
Cdd:PRK06525  358 LLPRLRGVLKKLPLVGVGFCVAALAITGVPPFNGFFSKFPIF 399
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 95-316 4.01e-03

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 38.90  E-value: 4.01e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  95 CLILTSAIAIKLGLAPFHFWFPEVLQGSPLTTGLLLSTIMKFPPMTLLLMTA--HSLNPTLLTSMAI---LSTALGGWMG 169
Cdd:MTH00020  213 CLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSplFEQAPLALIIVTIvgsLTVFFAATVG 292

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 170 LNQTQTRKILAFSSISHLGWMAIIISYSP-KLTLLNFYLYTVMTATVFLTLNST--------KVLKLSVLMttwSKAPSL 240
Cdd:MTH00020  293 LVQNDLKKVIAYSTCSQLGYMVVACGLSHySISLFHLMNHAFFKALLFLSAGSVihalsdeqDMRKMGGLI---SFLPLT 369

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1398321186 241 NAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDMVLAAMTISLLSLLSLFFY-LRLAYCATITLPPHTTNHMKQWH 316
Cdd:MTH00020  370 YIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSALLTAFYsIRLIYLTFLSNTNLKKAVFFHLH 446
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 11-296 8.55e-03

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 37.82  E-value: 8.55e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  11 LSLMLGTSITISSNHWAMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASALVLFSSTTNAWHTGQWDITQLT 90
Cdd:PRK08377  115 LLLMLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALIYGATGTLNMAHIA 194

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186  91 HPASCLILTSAI----AIKLGLA------PFHFWFPEVLQGSPLTTGLLLST------IMKFPPMTLLLMTAHSLNPTL- 153
Cdd:PRK08377  195 QLAGTIDPTVAQvglaLLIFGLAveaelfPLNAWAPDAYQAAPHPITVMFSAfvvkagLYAMARILYLMQNANGWSSVLk 274

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398321186 154 -LTSMAILSTALGGWMGLNQTQTRKILAFSSISHLGWMAIIISYSPKLT-------LLNFYLYTVM----TATVFLTLNS 221
Cdd:PRK08377  275 lVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQAGvdagvfhMINHAIVKALlflaVGYVGITLGG 354

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1398321186 222 TKVLKLSVLMttwSKAPSLNAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDMVLAAMTISLLSLLSLFFYLRL 296
Cdd:PRK08377  355 TEIEKFEGLG---KRMPLTALALTIGALSTVGIPLFNVFWSKFRIILAGLSAGYTWPVALVLGASVVEAVYYFRL 426
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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