NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1397658122|ref|XP_025081008|]
View 

centrosomal protein of 104 kDa-like isoform X1 [Pomacea canaliculata]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Extensin_2 super family cl25884
Extensin-like region;
312-357 1.38e-04

Extensin-like region;


The actual alignment was detected with superfamily member pfam04554:

Pssm-ID: 252669 [Multi-domain]  Cd Length: 57  Bit Score: 40.52  E-value: 1.38e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1397658122 312 PESYRQPTPPRLIEKEYSPPPPVLHSPTPrvayderPLPAAKNKPP 357
Cdd:pfam04554  18 PYYYKSPPPPVKSPVYKSPPPPVYKSPPP-------PKYVYKSPPP 56
tolA super family cl35847
cell envelope integrity inner membrane protein TolA; Provisional
 651-725 3.39e-03

cell envelope integrity inner membrane protein TolA; Provisional


The actual alignment was detected with superfamily member PRK09510:

Pssm-ID: 236545 [Multi-domain]  Cd Length: 387  Bit Score: 40.95  E-value: 3.39e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1397658122 651 KVDGKPSKADIKKHKAEEEAKKQAEIEALQKQLNELKQLTAAKEGGKDGPKPQKK-KPEAKKNVLPPKTKKDDDEA 725
Cdd:PRK09510  148 KAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKaEAEAKKKAAAEAKKKAAAEA 223
 
Name Accession Description Interval E-value
Extensin_2 pfam04554
Extensin-like region;
312-357 1.38e-04

Extensin-like region;


Pssm-ID: 252669 [Multi-domain]  Cd Length: 57  Bit Score: 40.52  E-value: 1.38e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1397658122 312 PESYRQPTPPRLIEKEYSPPPPVLHSPTPrvayderPLPAAKNKPP 357
Cdd:pfam04554  18 PYYYKSPPPPVKSPVYKSPPPPVYKSPPP-------PKYVYKSPPP 56
tolA PRK09510
cell envelope integrity inner membrane protein TolA; Provisional
 651-725 3.39e-03

cell envelope integrity inner membrane protein TolA; Provisional


Pssm-ID: 236545 [Multi-domain]  Cd Length: 387  Bit Score: 40.95  E-value: 3.39e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1397658122 651 KVDGKPSKADIKKHKAEEEAKKQAEIEALQKQLNELKQLTAAKEGGKDGPKPQKK-KPEAKKNVLPPKTKKDDDEA 725
Cdd:PRK09510  148 KAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKaEAEAKKKAAAEAKKKAAAEA 223
 
Name Accession Description Interval E-value
Extensin_2 pfam04554
Extensin-like region;
312-357 1.38e-04

Extensin-like region;


Pssm-ID: 252669 [Multi-domain]  Cd Length: 57  Bit Score: 40.52  E-value: 1.38e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1397658122 312 PESYRQPTPPRLIEKEYSPPPPVLHSPTPrvayderPLPAAKNKPP 357
Cdd:pfam04554  18 PYYYKSPPPPVKSPVYKSPPPPVYKSPPP-------PKYVYKSPPP 56
FAP pfam07174
Fibronectin-attachment protein (FAP); This family contains bacterial fibronectin-attachment ...
 318-392 1.64e-04

Fibronectin-attachment protein (FAP); This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix.


Pssm-ID: 429334  Cd Length: 301  Bit Score: 44.53  E-value: 1.64e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1397658122 318 PTPPRLIEKEYSPPPPVLHSPTPRVAyderPLPAAKNKPPaPQPEPSQPSASPKTHSERNLPVQrPIVAEEELEP 392
Cdd:pfam07174  45 PPPPSTATAPPAPPPPPPAPAAPAPP----PPPAAPNAPN-APPPPADPNAPPPPPADPNAPPP-PAVDPNAPEP 113
tolA PRK09510
cell envelope integrity inner membrane protein TolA; Provisional
 651-725 3.39e-03

cell envelope integrity inner membrane protein TolA; Provisional


Pssm-ID: 236545 [Multi-domain]  Cd Length: 387  Bit Score: 40.95  E-value: 3.39e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1397658122 651 KVDGKPSKADIKKHKAEEEAKKQAEIEALQKQLNELKQLTAAKEGGKDGPKPQKK-KPEAKKNVLPPKTKKDDDEA 725
Cdd:PRK09510  148 KAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKaEAEAKKKAAAEAKKKAAAEA 223
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH