|
Name |
Accession |
Description |
Interval |
E-value |
| srlR |
PRK10434 |
DNA-binding transcriptional repressor; |
1-256 |
0e+00 |
|
DNA-binding transcriptional repressor;
Pssm-ID: 182457 [Multi-domain] Cd Length: 256 Bit Score: 531.19 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1396648825 1 MKPRQRQAAILEHLQSQGKCSVEELAQHFDTTGTTIRKDLVILENAGTVIRTYGGVVLNKDEADPPIDHKTLINTHKKAQ 80
Cdd:PRK10434 1 MKPRQRQAAILEYLQKQGKTSVEELAQYFDTTGTTIRKDLVILEHAGTVIRTYGGVVLNKEESDPPIDHKTLINTHKKEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1396648825 81 IAEAAVRYIHDGDSIILDAGSTVLQMVPLLSRFNNITVMTNSLHIVNALSEFDNEQTILMPGGTFRKKSASFHGQLAENA 160
Cdd:PRK10434 81 IAEAAVSLIHDGDSIILDAGSTVLQMVPLLSRFNNITVMTNSLHIVNALSELDNEQTILMPGGTFRKKSASFHGQLAENA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1396648825 161 FEQFSFDKLFMGTDGIDLVAGVTTFNEVYTVSKAMCNAAREVILMADSSKFGRKSPNIVCGLERVDKLITDAEIDPEFQR 240
Cdd:PRK10434 161 FEHFTFDKLFIGTDGIDLNAGVTTFNEVYTVSKAMCNAAREIILMADSSKFGRKSPNVVCSLEKVDKLITDAGIDPAFRQ 240
|
250
....*....|....*.
gi 1396648825 241 ALEAKGIEVIITGEHH 256
Cdd:PRK10434 241 ALEEKGIEVIITGESN 256
|
|
| GlpR |
COG1349 |
DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, ... |
1-251 |
2.41e-108 |
|
DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, Carbohydrate transport and metabolism];
Pssm-ID: 440960 [Multi-domain] Cd Length: 254 Bit Score: 313.22 E-value: 2.41e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1396648825 1 MKPRQRQAAILEHLQSQGKCSVEELAQHFDTTGTTIRKDLVILENAGTVIRTYGGVVLN-KDEADPPIDHKTLINTHKKA 79
Cdd:COG1349 1 MLAEERRQKILELLRERGRVSVEELAERLGVSEETIRRDLAELEEQGLLRRVHGGAVLVsSAAAEPPFAERETLNAEEKR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1396648825 80 QIAEAAVRYIHDGDSIILDAGSTVLQMVPLLSRFNNITVMTNSLHIVNALSEFDNeQTILMPGGTFRKKSASFHGQLAEN 159
Cdd:COG1349 81 AIARAAASLIEDGDTIFLDAGTTTLALARALPDRRNLTVVTNSLNIANELAERPN-IEVILLGGELRPSSGSLVGPLAEE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1396648825 160 AFEQFSFDKLFMGTDGIDLVAGVTTFN-EVYTVSKAMCNAAREVILMADSSKFGRKSPNIVCGLERVDKLITDAEIDPEF 238
Cdd:COG1349 160 ALRRFRADKAFLGASGIDAEGGLTTFDeEEAEVKRAMIEAARRVILLADSSKFGRRALARVAPLSEIDVLITDAGPPPEL 239
|
250
....*....|...
gi 1396648825 239 QRALEAKGIEVII 251
Cdd:COG1349 240 LEALEEAGVEVIV 252
|
|
| AgaR |
NF040755 |
transcriptional repressor AgaR; |
5-251 |
2.90e-77 |
|
transcriptional repressor AgaR;
Pssm-ID: 468715 [Multi-domain] Cd Length: 256 Bit Score: 234.09 E-value: 2.90e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1396648825 5 QRQAAILEHLQSQGKCSVEELAQHFDTTGTTIRKDLVILENAGTVIRTYGGVVLNK---DEADPPIDHKTLINTHKKAQI 81
Cdd:NF040755 6 ERREQIIQRLRQQGSVQVEDLSALFGVSTVTIRNDLAFLEKQGIAVRAYGGALINDgfiPGAEPSVEDKSRLNTAVKRLI 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1396648825 82 AEAAVRYIHDGDSIILDAGSTVLQMVPLLSRFNNITVMTNSLHIVNALSEFDNEQtILMPGGTFRKKSASFHGQLAENAF 161
Cdd:NF040755 86 AAAAAELIKPGDRVILDSGTTTYEIARHLKQHQDVVVMTNGLNVANELLEAEGVE-VLMTGGHLRRQSLSFYGDQAEQSL 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1396648825 162 EQFSFDKLFMGTDGIDLVAGVTTFNE-VYTVSKAMCNAAREVILMADSSKFGRKSPNIVCGLERVDKLITDAEIDPEFQR 240
Cdd:NF040755 165 QNYHFDKLFLGVDGFDLERGITTHNEdEARLNRRMCEVAERIIAVTDSSKFGRSSLHKIRDTGRIDTLITDSGIPEEYLQ 244
|
250
....*....|.
gi 1396648825 241 ALEAKGIEVII 251
Cdd:NF040755 245 GLRKLGVEVIL 255
|
|
| DeoRC |
pfam00455 |
DeoR C terminal sensor domain; The sensor domains of the DeoR are catalytically inactive ... |
73-232 |
4.24e-65 |
|
DeoR C terminal sensor domain; The sensor domains of the DeoR are catalytically inactive versions of the ISOCOT fold, but retain the substrate binding site. DeorC senses diverse sugar derivatives such as deoxyribose nucleoside (DeoR), tagatose phosphate (LacR), galactosamine (AgaR), myo-inositol (Bacillus IolR) and L-ascorbate (UlaR). It can also bind L-ascorbate 6-phosphate, agrocinopines, sn-glycerol 3-phosphate, and sulfoquinovose (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 395365 Cd Length: 160 Bit Score: 199.66 E-value: 4.24e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1396648825 73 INTHKKAQIAEAAVRYIHDGDSIILDAGSTVLQMVPLLSRFNNITVMTNSLHIVNALSEFDNeQTILMPGGTFRKKSASF 152
Cdd:pfam00455 1 ENAEEKRRIAKAAASLIEDGDTIFLDAGTTTLELARALPDRRNLTVITNSLNIANELSEKPD-IEVILLGGEVRPKTGAF 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1396648825 153 HGQLAENAFEQFSFDKLFMGTDGIDLVAGVTTFNE-VYTVSKAMCNAAREVILMADSSKFGRKSPNIVCGLERVDKLITD 231
Cdd:pfam00455 80 VGPLAEEFLRQFNVDKAFIGANGIDLEGGLTTSDEeEAEVKRAMIEAARRVILLADSSKFGKRAFARFAPLEDIDALITD 159
|
.
gi 1396648825 232 A 232
Cdd:pfam00455 160 K 160
|
|
| HTH_DEOR |
smart00420 |
helix_turn_helix, Deoxyribose operon repressor; |
6-58 |
4.88e-17 |
|
helix_turn_helix, Deoxyribose operon repressor;
Pssm-ID: 197714 [Multi-domain] Cd Length: 53 Bit Score: 72.64 E-value: 4.88e-17
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 1396648825 6 RQAAILEHLQSQGKCSVEELAQHFDTTGTTIRKDLVILENAGTVIRTYGGVVL 58
Cdd:smart00420 1 RQQQILELLAQQGKVSVEELAELLGVSEMTIRRDLNKLEEQGLLTRVHGGAVS 53
|
|
| HTH_metalloreg |
NF033788 |
metalloregulator ArsR/SmtB family transcription factor; Transcriptional repressors that sense ... |
9-51 |
5.55e-03 |
|
metalloregulator ArsR/SmtB family transcription factor; Transcriptional repressors that sense toxic heavy metals such as arsenic or cadmium, and are released from DNA so that resistance factors will be expressed, include ArsR, SmtB, ZiaR, CadC, CadX, KmtR, etc. However, some members of this family, including the sporulation delaying system autorepressor SdpR and its family (see NF033789), may lack metal-binding cites and instead regulate other cellular processes.
Pssm-ID: 411368 [Multi-domain] Cd Length: 76 Bit Score: 34.74 E-value: 5.55e-03
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 1396648825 9 AILEHLqSQGKCSVEELAQHFDTTGTTIRKDLVILENAGTVIR 51
Cdd:NF033788 15 RILELL-AEGELCVCELAEALGLSQSAVSQHLKVLRDAGLVTS 56
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| srlR |
PRK10434 |
DNA-binding transcriptional repressor; |
1-256 |
0e+00 |
|
DNA-binding transcriptional repressor;
Pssm-ID: 182457 [Multi-domain] Cd Length: 256 Bit Score: 531.19 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1396648825 1 MKPRQRQAAILEHLQSQGKCSVEELAQHFDTTGTTIRKDLVILENAGTVIRTYGGVVLNKDEADPPIDHKTLINTHKKAQ 80
Cdd:PRK10434 1 MKPRQRQAAILEYLQKQGKTSVEELAQYFDTTGTTIRKDLVILEHAGTVIRTYGGVVLNKEESDPPIDHKTLINTHKKEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1396648825 81 IAEAAVRYIHDGDSIILDAGSTVLQMVPLLSRFNNITVMTNSLHIVNALSEFDNEQTILMPGGTFRKKSASFHGQLAENA 160
Cdd:PRK10434 81 IAEAAVSLIHDGDSIILDAGSTVLQMVPLLSRFNNITVMTNSLHIVNALSELDNEQTILMPGGTFRKKSASFHGQLAENA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1396648825 161 FEQFSFDKLFMGTDGIDLVAGVTTFNEVYTVSKAMCNAAREVILMADSSKFGRKSPNIVCGLERVDKLITDAEIDPEFQR 240
Cdd:PRK10434 161 FEHFTFDKLFIGTDGIDLNAGVTTFNEVYTVSKAMCNAAREIILMADSSKFGRKSPNVVCSLEKVDKLITDAGIDPAFRQ 240
|
250
....*....|....*.
gi 1396648825 241 ALEAKGIEVIITGEHH 256
Cdd:PRK10434 241 ALEEKGIEVIITGESN 256
|
|
| GlpR |
COG1349 |
DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, ... |
1-251 |
2.41e-108 |
|
DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, Carbohydrate transport and metabolism];
Pssm-ID: 440960 [Multi-domain] Cd Length: 254 Bit Score: 313.22 E-value: 2.41e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1396648825 1 MKPRQRQAAILEHLQSQGKCSVEELAQHFDTTGTTIRKDLVILENAGTVIRTYGGVVLN-KDEADPPIDHKTLINTHKKA 79
Cdd:COG1349 1 MLAEERRQKILELLRERGRVSVEELAERLGVSEETIRRDLAELEEQGLLRRVHGGAVLVsSAAAEPPFAERETLNAEEKR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1396648825 80 QIAEAAVRYIHDGDSIILDAGSTVLQMVPLLSRFNNITVMTNSLHIVNALSEFDNeQTILMPGGTFRKKSASFHGQLAEN 159
Cdd:COG1349 81 AIARAAASLIEDGDTIFLDAGTTTLALARALPDRRNLTVVTNSLNIANELAERPN-IEVILLGGELRPSSGSLVGPLAEE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1396648825 160 AFEQFSFDKLFMGTDGIDLVAGVTTFN-EVYTVSKAMCNAAREVILMADSSKFGRKSPNIVCGLERVDKLITDAEIDPEF 238
Cdd:COG1349 160 ALRRFRADKAFLGASGIDAEGGLTTFDeEEAEVKRAMIEAARRVILLADSSKFGRRALARVAPLSEIDVLITDAGPPPEL 239
|
250
....*....|...
gi 1396648825 239 QRALEAKGIEVII 251
Cdd:COG1349 240 LEALEEAGVEVIV 252
|
|
| AgaR |
NF040755 |
transcriptional repressor AgaR; |
5-251 |
2.90e-77 |
|
transcriptional repressor AgaR;
Pssm-ID: 468715 [Multi-domain] Cd Length: 256 Bit Score: 234.09 E-value: 2.90e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1396648825 5 QRQAAILEHLQSQGKCSVEELAQHFDTTGTTIRKDLVILENAGTVIRTYGGVVLNK---DEADPPIDHKTLINTHKKAQI 81
Cdd:NF040755 6 ERREQIIQRLRQQGSVQVEDLSALFGVSTVTIRNDLAFLEKQGIAVRAYGGALINDgfiPGAEPSVEDKSRLNTAVKRLI 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1396648825 82 AEAAVRYIHDGDSIILDAGSTVLQMVPLLSRFNNITVMTNSLHIVNALSEFDNEQtILMPGGTFRKKSASFHGQLAENAF 161
Cdd:NF040755 86 AAAAAELIKPGDRVILDSGTTTYEIARHLKQHQDVVVMTNGLNVANELLEAEGVE-VLMTGGHLRRQSLSFYGDQAEQSL 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1396648825 162 EQFSFDKLFMGTDGIDLVAGVTTFNE-VYTVSKAMCNAAREVILMADSSKFGRKSPNIVCGLERVDKLITDAEIDPEFQR 240
Cdd:NF040755 165 QNYHFDKLFLGVDGFDLERGITTHNEdEARLNRRMCEVAERIIAVTDSSKFGRSSLHKIRDTGRIDTLITDSGIPEEYLQ 244
|
250
....*....|.
gi 1396648825 241 ALEAKGIEVII 251
Cdd:NF040755 245 GLRKLGVEVIL 255
|
|
| DeoRC |
pfam00455 |
DeoR C terminal sensor domain; The sensor domains of the DeoR are catalytically inactive ... |
73-232 |
4.24e-65 |
|
DeoR C terminal sensor domain; The sensor domains of the DeoR are catalytically inactive versions of the ISOCOT fold, but retain the substrate binding site. DeorC senses diverse sugar derivatives such as deoxyribose nucleoside (DeoR), tagatose phosphate (LacR), galactosamine (AgaR), myo-inositol (Bacillus IolR) and L-ascorbate (UlaR). It can also bind L-ascorbate 6-phosphate, agrocinopines, sn-glycerol 3-phosphate, and sulfoquinovose (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 395365 Cd Length: 160 Bit Score: 199.66 E-value: 4.24e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1396648825 73 INTHKKAQIAEAAVRYIHDGDSIILDAGSTVLQMVPLLSRFNNITVMTNSLHIVNALSEFDNeQTILMPGGTFRKKSASF 152
Cdd:pfam00455 1 ENAEEKRRIAKAAASLIEDGDTIFLDAGTTTLELARALPDRRNLTVITNSLNIANELSEKPD-IEVILLGGEVRPKTGAF 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1396648825 153 HGQLAENAFEQFSFDKLFMGTDGIDLVAGVTTFNE-VYTVSKAMCNAAREVILMADSSKFGRKSPNIVCGLERVDKLITD 231
Cdd:pfam00455 80 VGPLAEEFLRQFNVDKAFIGANGIDLEGGLTTSDEeEAEVKRAMIEAARRVILLADSSKFGKRAFARFAPLEDIDALITD 159
|
.
gi 1396648825 232 A 232
Cdd:pfam00455 160 K 160
|
|
| PRK09802 |
PRK09802 |
DeoR family transcriptional regulator; |
4-254 |
2.65e-62 |
|
DeoR family transcriptional regulator;
Pssm-ID: 182086 [Multi-domain] Cd Length: 269 Bit Score: 196.61 E-value: 2.65e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1396648825 4 RQRQAAILEHLQSQGKCSVEELAQHFDTTGTTIRKDLVILENAGTVIRTYGGVVL---NKDEADPPIDHKTLINTHKKAQ 80
Cdd:PRK09802 16 SERREQIIQRLRQQGSVQVNDLSALYGVSTVTIRNDLAFLEKQGIAVRAYGGALIcdsTTPSVEPSVEDKSALNTAMKRS 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1396648825 81 IAEAAVRYIHDGDSIILDAGSTVLQMVPLLSRFNNITVMTNSLHIVNALSEFDNeQTILMPGGTFRKKSASFHGQLAENA 160
Cdd:PRK09802 96 VAKAAVELIQPGHRVILDSGTTTFEIARLMRKHTDVIAMTNGMNVANALLEAEG-VELLMTGGHLRRQSQSFYGDQAEQS 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1396648825 161 FEQFSFDKLFMGTDGIDLVAGVTTFNEVYT-VSKAMCNAAREVILMADSSKFGRKSPNIVCGLERVDKLITDAEIDPEFQ 239
Cdd:PRK09802 175 LQNYHFDMLFLGVDAIDLERGVSTHNEDEArLNRRMCEVAERIIVVTDSSKFNRSSLHKIIDTQRIDMIIVDEGIPADSL 254
|
250
....*....|....*
gi 1396648825 240 RALEAKGIEVIITGE 254
Cdd:PRK09802 255 EGLRKAGVEVILVGE 269
|
|
| PRK10906 |
PRK10906 |
DeoR/GlpR family transcriptional regulator; |
1-243 |
7.24e-30 |
|
DeoR/GlpR family transcriptional regulator;
Pssm-ID: 182827 [Multi-domain] Cd Length: 252 Bit Score: 112.26 E-value: 7.24e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1396648825 1 MKPRQRQAAILEHLQSQGKCSVEELAQHFDTTGTTIRKDLVILENAGTVIRTYGGVVLNKDEADPPIDHKTLINTHKKAQ 80
Cdd:PRK10906 1 MKQTQRHDAIIELVKQQGYVSTEELVEHFSVSPQTIRRDLNDLAEQNKILRHHGGAALPSSSVNTPWHDRKATQTEEKER 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1396648825 81 IAEAAVRYIHDGDSIILDAGSTVLQMVPLLSRFNNITVMTNSLHIVNALSEFDNEQTILmPGGTFRKKSASFHGQLAENA 160
Cdd:PRK10906 81 IARKVASQIPNGATLFIDIGTTPEAVAHALLNHSNLRIVTNNLNVANTLMAKEDFRIIL-AGGELRSRDGGIIGEATLDF 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1396648825 161 FEQFSFDKLFMGTDGIDLVAGVTTFN--EVYTvSKAMCNAAREVILMADSSKFGRKSPNIVCGLERVDKLITDAEIDPEF 238
Cdd:PRK10906 160 ISQFRLDFGILGISGIDSDGSLLEFDyhEVRT-KRAIIENSRHVMLVVDHSKFGRNAMVNMGSISMVDAVYTDQLPPASV 238
|
....*
gi 1396648825 239 QRALE 243
Cdd:PRK10906 239 MQVIE 243
|
|
| PRK13509 |
PRK13509 |
HTH-type transcriptional regulator UlaR; |
1-251 |
1.01e-27 |
|
HTH-type transcriptional regulator UlaR;
Pssm-ID: 184100 [Multi-domain] Cd Length: 251 Bit Score: 106.63 E-value: 1.01e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1396648825 1 MKPRQRQAAILEHLQSQGKCSVEELAQHFDTTGTTIRKDLVILENAGTV--IRTYGGVVLNKDEADPPIDHKTLINTHKK 78
Cdd:PRK13509 1 MTEAQRHQILLELLAQLGFVTVEKVIERLGISPATARRDINKLDESGKLkkVRNGAEAITQQRPRWTPMNIHQAQNHDEK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1396648825 79 AQIAEAAVRYIHDGDSIILDAGSTVLqmvpLLSRF---NNITVMTNSLHIVNALSEFDNEQTILMpGGTFRKKSASFhgq 155
Cdd:PRK13509 81 VRIAKAASQLCNPGESVVINCGSTAF----LLGRElcgKPVQIITNYLPLANYLIDQEHDSVIIM-GGQYNKSQSIT--- 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1396648825 156 LAENAFEQFSFDKLFMGTDGIDLVA-GVTTFNEVYTVSKA-MCNAAREVILMADSSKFGRKSPNIVCGLERVDKLITDAE 233
Cdd:PRK13509 153 LSPQGSENSLYAGHWMFTSGKGLTAdGLYKTDMLTAMAEQkMLSVVGKLVVLVDSSKIGERAGMLFSRADQIDMLITGKN 232
|
250
....*....|....*...
gi 1396648825 234 IDPEFQRALEAKGIEVII 251
Cdd:PRK13509 233 ADPEVLQQLEAQGVSILL 250
|
|
| HTH_DeoR |
pfam08220 |
DeoR-like helix-turn-helix domain; |
6-60 |
2.46e-18 |
|
DeoR-like helix-turn-helix domain;
Pssm-ID: 285436 [Multi-domain] Cd Length: 57 Bit Score: 76.14 E-value: 2.46e-18
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 1396648825 6 RQAAILEHLQSQGKCSVEELAQHFDTTGTTIRKDLVILENAGTVIRTYGGVVLNK 60
Cdd:pfam08220 1 RIQQILELLKQQGTLSVEELAELLGVSEMTIRRDLNELEEQGLLTRTHGGAVSNS 55
|
|
| PRK10681 |
PRK10681 |
DNA-binding transcriptional repressor DeoR; Provisional |
1-250 |
1.25e-17 |
|
DNA-binding transcriptional repressor DeoR; Provisional
Pssm-ID: 182644 [Multi-domain] Cd Length: 252 Bit Score: 79.36 E-value: 1.25e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1396648825 1 MKPR--QRQAAILEHLQSQGKCSVEELAQHFDTTGTTIRKDLVilENAGTVIRTYGGVVLNKDEADPPI--DHKTLInTH 76
Cdd:PRK10681 1 METRrdERIGQLLQALKRSDKLHLKDAAALLGVSEMTIRRDLN--AHSAPVVLLGGYIVLEPRSASHYLlsDQKSRL-VE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1396648825 77 KKAQIAEAAVRYIHDGDSIILDAGSTVLQMVPLLSRFNNITVMTNSLHIVNALSEFDNEQTILMpGGTFRKKSASFHGQL 156
Cdd:PRK10681 78 EKRRAAQLAATLVEPNQTLFFDCGTTTPWIIEAIDNELPFTAVCYSLNTFLALQEKPHCRAILC-GGEFHASNAIFKPLD 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1396648825 157 AENAFEQFSFDKLFMGTDGIDLVAGVTTFN--EVYTVSKAMcNAAREVILMADSSKFGRKSPNIVCGLERVDKLITDAEI 234
Cdd:PRK10681 157 FQQTLDNICPDIAFYSAAGVHVSKGATCFNleELPVKHWAM-AMAQKHVLVVDHSKFGKVRPARMGDLTRFDTVVSDRCP 235
|
250
....*....|....*.
gi 1396648825 235 DPEFQRALEAKGIEVI 250
Cdd:PRK10681 236 DDEFVKYAQAQRIKLM 251
|
|
| HTH_DEOR |
smart00420 |
helix_turn_helix, Deoxyribose operon repressor; |
6-58 |
4.88e-17 |
|
helix_turn_helix, Deoxyribose operon repressor;
Pssm-ID: 197714 [Multi-domain] Cd Length: 53 Bit Score: 72.64 E-value: 4.88e-17
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 1396648825 6 RQAAILEHLQSQGKCSVEELAQHFDTTGTTIRKDLVILENAGTVIRTYGGVVL 58
Cdd:smart00420 1 RQQQILELLAQQGKVSVEELAELLGVSEMTIRRDLNKLEEQGLLTRVHGGAVS 53
|
|
| PRK10411 |
PRK10411 |
L-fucose operon activator; |
6-233 |
8.23e-17 |
|
L-fucose operon activator;
Pssm-ID: 236684 [Multi-domain] Cd Length: 240 Bit Score: 77.15 E-value: 8.23e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1396648825 6 RQAAILEHLQSQGKCSVEELAQHFDTTGTTIRKDLVILENAGTVIRTYGGVVL----NKDEADPpidHKTLINTH--KKA 79
Cdd:PRK10411 5 RQQAIVDLLLNHTSLTTEALAEQLNVSKETIRRDLNELQTQGKILRNHGRAKYihrqNQDSGDP---FHIRLKSHyaHKA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1396648825 80 QIAEAAVRYIHDGDSIILDAGSTVLQMVPLLSRFnNITVMTNSLHIVNALSEFDNEQTIlMPGGTFRKKSASFHGQLAEN 159
Cdd:PRK10411 82 DIAREALAWIEEGMVIALDASSTCWYLARQLPDI-NIQVFTNSHPICQELGKRERIQLI-SSGGTLERKYGCYVNPSLIS 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1396648825 160 AFEQFSFDKLFMGTDGIDLVAGVTTFNEVYTVSKAM-CNAAREVILMADSSKFGRKSPNIVCGLERVDKLITDAE 233
Cdd:PRK10411 160 QLKSLEIDLFIFSCEGIDSSGALWDSNAINADYKSMlLKRAAQSLLLIDKSKFNRSGEARIGHLDEVTHIISDER 234
|
|
| YobV |
COG2378 |
Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains ... |
1-67 |
3.28e-08 |
|
Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains [Transcription];
Pssm-ID: 441945 [Multi-domain] Cd Length: 314 Bit Score: 53.16 E-value: 3.28e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1396648825 1 MKPRQRQAAILEHLQSQGKCSVEELAQHFDTTGTTIRKDLVILENAGTVIRT----YGGVVLNKDEADPPI 67
Cdd:COG2378 1 MSRLERLLALLQLLQSRRGVTAAELAERLEVSERTIYRDIDALRELGVPIEAergrGGGYRLRDGYRLPPL 71
|
|
| COG2345 |
COG2345 |
Predicted transcriptional regulator, ArsR family [Transcription]; |
6-53 |
2.90e-06 |
|
Predicted transcriptional regulator, ArsR family [Transcription];
Pssm-ID: 441914 [Multi-domain] Cd Length: 217 Bit Score: 46.84 E-value: 2.90e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 1396648825 6 RQAAILEHLQSQGKCSVEELAQHFDTTGTTIRKDLVILENAGTVIRTY 53
Cdd:COG2345 14 TRRRILELLKRAGPVTAAELAEALGLTPNAVRRHLDALEEEGLVERET 61
|
|
| HTH_11 |
pfam08279 |
HTH domain; This family includes helix-turn-helix domains in a wide variety of proteins. |
9-50 |
1.98e-04 |
|
HTH domain; This family includes helix-turn-helix domains in a wide variety of proteins.
Pssm-ID: 429896 [Multi-domain] Cd Length: 52 Bit Score: 38.18 E-value: 1.98e-04
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 1396648825 9 AILEHL-QSQGKCSVEELAQHFDTTGTTIRKDLVILENAGTVI 50
Cdd:pfam08279 2 QILQLLlEARGPISGQELAEKLGVSRRTIRRDIKILEELGVPI 44
|
|
| HTH_ARSR |
smart00418 |
helix_turn_helix, Arsenical Resistance Operon Repressor; |
10-55 |
1.90e-03 |
|
helix_turn_helix, Arsenical Resistance Operon Repressor;
Pssm-ID: 197713 [Multi-domain] Cd Length: 66 Bit Score: 36.03 E-value: 1.90e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 1396648825 10 ILEHLqSQGKCSVEELAQHFDTTGTTIRKDLVILENAGTVIRTYGG 55
Cdd:smart00418 2 ILKLL-AEGELCVCELAEILGLSQSTVSHHLKKLREAGLVESRREG 46
|
|
| HTH_20 |
pfam12840 |
Helix-turn-helix domain; This domain represents a DNA-binding Helix-turn-helix domain found in ... |
8-52 |
4.96e-03 |
|
Helix-turn-helix domain; This domain represents a DNA-binding Helix-turn-helix domain found in transcriptional regulatory proteins.
Pssm-ID: 432824 [Multi-domain] Cd Length: 61 Bit Score: 34.44 E-value: 4.96e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 1396648825 8 AAILEHLQSQGKCSVEELAQHFDTTGTTIRKDLVILENAG--TVIRT 52
Cdd:pfam12840 13 LRILRALVGDEPLTASELARRLDISRNTLSYHLRKLEEAGlvEVVRE 59
|
|
| HTH_metalloreg |
NF033788 |
metalloregulator ArsR/SmtB family transcription factor; Transcriptional repressors that sense ... |
9-51 |
5.55e-03 |
|
metalloregulator ArsR/SmtB family transcription factor; Transcriptional repressors that sense toxic heavy metals such as arsenic or cadmium, and are released from DNA so that resistance factors will be expressed, include ArsR, SmtB, ZiaR, CadC, CadX, KmtR, etc. However, some members of this family, including the sporulation delaying system autorepressor SdpR and its family (see NF033789), may lack metal-binding cites and instead regulate other cellular processes.
Pssm-ID: 411368 [Multi-domain] Cd Length: 76 Bit Score: 34.74 E-value: 5.55e-03
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 1396648825 9 AILEHLqSQGKCSVEELAQHFDTTGTTIRKDLVILENAGTVIR 51
Cdd:NF033788 15 RILELL-AEGELCVCELAEALGLSQSAVSQHLKVLRDAGLVTS 56
|
|
| HTH_PafC |
pfam19187 |
PafC helix-turn-helix domain; This entry is an N-terminal HTH domain found in the PafC protein. ... |
6-47 |
7.58e-03 |
|
PafC helix-turn-helix domain; This entry is an N-terminal HTH domain found in the PafC protein. Transcriptional activator PafBC is responsible for upregulating the majority of genes induced by DNA damage.
Pssm-ID: 465990 [Multi-domain] Cd Length: 115 Bit Score: 35.23 E-value: 7.58e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1396648825 6 RQAAILEHLQSQGKCSVEELAQHFDTTGTTIRKDLVILENAG 47
Cdd:pfam19187 5 RLLDLVPYLRQHPGVSVAEAAARFGVTPAQLRADLDVLFVCG 46
|
|
| COG1777 |
COG1777 |
Predicted transcriptional regulator, ArsR family [Transcription]; |
10-49 |
8.15e-03 |
|
Predicted transcriptional regulator, ArsR family [Transcription];
Pssm-ID: 441383 Cd Length: 113 Bit Score: 35.39 E-value: 8.15e-03
10 20 30 40
....*....|....*....|....*....|....*....|
gi 1396648825 10 ILEHLqSQGKCSVEELAQHFDTTGTTIRKDLVILENAGTV 49
Cdd:COG1777 22 ILALL-SEEPAYVSELARELGVSRQAVYKHLRKLEEAGLV 60
|
|
| Lrp |
COG1522 |
DNA-binding transcriptional regulator, Lrp family [Transcription]; |
9-57 |
8.99e-03 |
|
DNA-binding transcriptional regulator, Lrp family [Transcription];
Pssm-ID: 441131 [Multi-domain] Cd Length: 138 Bit Score: 35.52 E-value: 8.99e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 1396648825 9 AILEHLQSQGKCSVEELAQHFDTTGTTIRKDLVILENAGtVIRTYGGVV 57
Cdd:COG1522 9 RILRLLQEDGRLSFAELAERVGLSESTVLRRVRRLEEAG-VIRGYGAVV 56
|
|
|