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Conserved domains on  [gi|1389449453|gb|AWK29299|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Ascaris sp.]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009561)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-111 2.92e-35

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177155  Cd Length: 111  Bit Score: 116.53  E-value: 2.92e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1389449453   1 MLVLVMVVLFTLVLLFVFYIGNFVLSCKDFYKNKISSFECGFVSVGKIQNSFSIHFFIMMLMFVIFDLEVVMFLGILVSD 80
Cdd:MTH00092    1 MLVLIFVFLFTLLLLMLLYLLNFFLSVKKFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGLLVSD 80

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1389449453  81 LNSLISFFMLLMFIFGGFYMEWWYGKLVWLI 111
Cdd:MTH00092   81 FSSLISFFMLMIFIFFGFYMEWWYGKLIWVI 111
 
Name Accession Description Interval E-value
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-111 2.92e-35

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 116.53  E-value: 2.92e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1389449453   1 MLVLVMVVLFTLVLLFVFYIGNFVLSCKDFYKNKISSFECGFVSVGKIQNSFSIHFFIMMLMFVIFDLEVVMFLGILVSD 80
Cdd:MTH00092    1 MLVLIFVFLFTLLLLMLLYLLNFFLSVKKFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGLLVSD 80

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1389449453  81 LNSLISFFMLLMFIFGGFYMEWWYGKLVWLI 111
Cdd:MTH00092   81 FSSLISFFMLMIFIFFGFYMEWWYGKLIWVI 111
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
22-107 3.18e-12

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 57.43  E-value: 3.18e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1389449453  22 NFVLSCKDFYKNKISSFECGFVSVGKIQNSFSIHFFIMMLMFVIFDLEVVMFLGILVS-DLNSLISFFMLLMFIF---GG 97
Cdd:pfam00507   4 SRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSfRELGWFGFVEMLIFIAillVG 83

                          90
                  ....*....|
gi 1389449453  98 FYMEWWYGKL 107
Cdd:pfam00507  84 LVYAWKKGAL 93
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 2-109 1.88e-09

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 50.89  E-value: 1.88e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1389449453   2 LVLVMVVLFTLVLLFVFYIGNFVLSCKDFYKNKISSFECGFVSVGKIQNSFSIHFFIMMLMFVIFDLEVVMFLGILVS-- 79
Cdd:COG0838     6 LPILIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVfr 85

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1389449453  80 --DLNSLISFFMLLMFIFGGFYMEWWYGKLVW 109
Cdd:COG0838    86 elGWFGLIEMLVFIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-111 2.92e-35

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 116.53  E-value: 2.92e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1389449453   1 MLVLVMVVLFTLVLLFVFYIGNFVLSCKDFYKNKISSFECGFVSVGKIQNSFSIHFFIMMLMFVIFDLEVVMFLGILVSD 80
Cdd:MTH00092    1 MLVLIFVFLFTLLLLMLLYLLNFFLSVKKFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGLLVSD 80

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1389449453  81 LNSLISFFMLLMFIFGGFYMEWWYGKLVWLI 111
Cdd:MTH00092   81 FSSLISFFMLMIFIFFGFYMEWWYGKLIWVI 111
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
22-107 3.18e-12

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 57.43  E-value: 3.18e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1389449453  22 NFVLSCKDFYKNKISSFECGFVSVGKIQNSFSIHFFIMMLMFVIFDLEVVMFLGILVS-DLNSLISFFMLLMFIF---GG 97
Cdd:pfam00507   4 SRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSfRELGWFGFVEMLIFIAillVG 83

                          90
                  ....*....|
gi 1389449453  98 FYMEWWYGKL 107
Cdd:pfam00507  84 LVYAWKKGAL 93
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-109 4.41e-10

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 52.55  E-value: 4.41e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1389449453   1 MLVLVMVVLFTLVLLFVFYIGNFVLSCKDFY-KNKISSFECGFVSVGKIQNSFSIHFFIMMLMFVIFDLEVVMFLGILVS 79
Cdd:MTH00148    1 MLSILLSLLFALILSPVLLLLGLVLSKRSYSdREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1389449453  80 DLNS-----LISFFMLLMFIFGGFYMEWWYGKLVW 109
Cdd:MTH00148   81 LGSSfsvwsLTSLFIFLLILILGLFHEWNEGSLDW 115
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 2-109 1.88e-09

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 50.89  E-value: 1.88e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1389449453   2 LVLVMVVLFTLVLLFVFYIGNFVLSCKDFYKNKISSFECGFVSVGKIQNSFSIHFFIMMLMFVIFDLEVVMFLGILVS-- 79
Cdd:COG0838     6 LPILIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVfr 85

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1389449453  80 --DLNSLISFFMLLMFIFGGFYMEWWYGKLVW 109
Cdd:COG0838    86 elGWFGLIEMLVFIAILLVGLIYAWKKGALEW 117
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-109 2.05e-08

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 47.97  E-value: 2.05e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1389449453   1 MLVLVMVVLFTLVLLFVFYIGNFVLSCKDFYKNKISSFECGFVSVGKIQNSFSIHFFIMMLMFVIFDLEVVMFLGILVSD 80
Cdd:MTH00203    1 MNLIMLFFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSN 80

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1389449453  81 LNSLISFFM---LLMFIFGGFYMEWWYGKLVW 109
Cdd:MTH00203   81 QLSSLSLLLaflFLILLTLGLIYEWLQGGLEW 112
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 3-109 2.73e-07

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 45.15  E-value: 2.73e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1389449453   3 VLVMVVLFTLVLLFVFYIGNFVLSCKDFY-KNKISSFECGFVSVGKIQNSFSIHFFIMMLMFVIFDLEVVMFLGILVSDL 81
Cdd:MTH00161    1 MILIILLIILLISIILMILASLLSKKSIMdREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1389449453  82 NSLISFFMLLMFIF-----GGFYMEWWYGKLVW 109
Cdd:MTH00161   81 TSNMMSWLITSSFFilillLGLYYEWNQGALEW 113
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 4-109 4.15e-07

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 44.60  E-value: 4.15e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1389449453   4 LVMVVLFTLVLLFVFYIGNFVLSCKDFYKNKISSFECGFVSVGKIQNSFSIHFFIMMLMFVIFDLEVVMFLGI-----LV 78
Cdd:MTH00069    2 IMLMLLISTILSLILITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTpwasqLN 81

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1389449453  79 SDLNSLISFFMLLMFIFGGFYMEWWYGKLVW 109
Cdd:MTH00069   82 TPTNTLFWSTLILILLTLGLIYEWIQGGLEW 112
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 3-109 1.63e-06

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 43.33  E-value: 1.63e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1389449453   3 VLVMVVLFTLVLLFVFYIGNFVLSCKDFYKNKISSFECGFVSVGKIQNSFSIHFFIMMLMFVIFDLEVVMFLGI-----L 77
Cdd:MTH00113    2 NLISMLTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLpwainL 81

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1389449453  78 VSDLNSLISFFMLLMFIFGGFYMEWWYGKLVW 109
Cdd:MTH00113   82 TTPTTTLTWATIILTLLTLGLIYEWLQGGLEW 113
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-109 3.66e-06

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 42.28  E-value: 3.66e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1389449453   1 MLVLVMVVLFTLVLLFVFYIGNFVLSCKDFYKNKISSFECGFVSVGKIQNSFSIHFFIMMLMFVIFDLEVVMFLGILVSD 80
Cdd:MTH00042    1 MTNLIFFLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPAT 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1389449453  81 LNSLISFFMLLMFIF-----GGFYMEWWYGKLVW 109
Cdd:MTH00042   81 LITNPSTLLPISLIFliiltIGLVYEWVNGGLEW 114
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 34-109 1.04e-05

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 41.06  E-value: 1.04e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1389449453  34 KISSFECGFVSVGKIQNSFSIHFFIMMLMFVIFDLEVVMFLGI-----LVSDLNSLISFFMLLMFIFGGFYMEWWYGKLV 108
Cdd:MTH00136   34 KLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLpwgdqLPSPLLTFFWATAVLILLTLGLIYEWLQGGLE 113


                  .
gi 1389449453 109 W 109
Cdd:MTH00136  114 W 114
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 4-109 1.34e-05

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 40.82  E-value: 1.34e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1389449453   4 LVMVVLFTLVLLFVFYIGNFVLSCKDFYKNKISSFECGFVSVGKIQNSFSIHFFIMMLMFVIFDLEVV-MFLGILVSDLN 82
Cdd:MTH00018    3 LFILLIFSVVLSALFSGASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISfLFPWCVLYNQI 82

                          90       100       110
                  ....*....|....*....|....*....|
gi 1389449453  83 SLISFFMLLMFIFG---GFYMEWWYGKLVW 109
Cdd:MTH00018   83 APFGFWTMVGFLFIltlGLIYEWIKGGLEW 112
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-111 3.94e-05

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 39.59  E-value: 3.94e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1389449453   1 MLVLVMVVLFTLVLLFVFYIGNFVLSCKDFYKNKISSFECGFVSVGKIQNSFSIHFFIMMLMFVIFDLEVVMFLGILVS- 79
Cdd:MTH00202    2 LLILFMSILSILISSLLFLVSWMLSFRSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLVl 81

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1389449453  80 ----DLNSLISFFMLLMFIFGGFYMEWWYGKLVWLI 111
Cdd:MTH00202   82 ksswSKGGLLGGTIFLLILIGGLIHEWKEGSLDWVK 117
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 4-109 4.43e-05

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 39.46  E-value: 4.43e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1389449453   4 LVMVVLFTLVLLFVFYIGNFVLSCKDFYKNKISSFECGFVSVGKIQNSFSIHFFIMMLMFVIFDLEVVMFLGILVSDLNS 83
Cdd:PRK06602   11 FLIFLIVAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFPWAVSFREI 90

                          90       100       110
                  ....*....|....*....|....*....|
gi 1389449453  84 -LISFFMLLMFI---FGGFYMEWWYGKLVW 109
Cdd:PRK06602   91 gWLGFVEAMIFIlvlLVGLVYLWRKGALDW 120
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-109 5.77e-05

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 39.15  E-value: 5.77e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1389449453   1 MLVLVMVVLFTLVLLFVfyigNFVLSCKDFYKNKISSFECGFVSVGKIQNSFSIHFFIMMLMFVIFDLEVVMFL----GI 76
Cdd:MTH00106    4 MLTLLTNTLLASLLVLI----AFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLplpwAS 79

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1389449453  77 LVSDLNS-LISFFMLLMFIFGGFYMEWWYGKLVW 109
Cdd:MTH00106   80 QTNNLNTmLTMALLLISLLALSLAYEWTQKGLEW 113
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 1-109 3.42e-04

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 37.00  E-value: 3.42e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1389449453   1 MLVLVMVVLFTLVLLFVFYIGNFVLSCKDFYKNKISSFECGFVSVGKIQNSFSIHFFIMMLMFVIFDLEVV-MFLGILVS 79
Cdd:MTH00055    5 FLGIFILLLFSIGLSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISfLFPWCVVY 84

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1389449453  80 DLNSLISFFMLLMFIF---GGFYMEWWYGKLVW 109
Cdd:MTH00055   85 NQIGLFGFWVMYLFLIiltIGLIYEWVKGGLEW 117
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 32-109 4.69e-04

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 36.76  E-value: 4.69e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1389449453  32 KNKISSFECGFVSVGKIQNSFSIHFFIMMLMFVIFDLEVVMFLGILVSDLNS-----LISFFMLLMFIFGGFYMEWWYGK 106
Cdd:MTH00012   33 REKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTILMTStsktvVYTSILFLLILVIGLIHEWREGS 112


                  ...
gi 1389449453 107 LVW 109
Cdd:MTH00012  113 LDW 115
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 3-110 6.26e-04

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 36.41  E-value: 6.26e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1389449453   3 VLVMVVLFTLVLLFVFYIGNFVLSCKDFykNKISSFECGFVSVGKIQNSFSIHFFIMMLMFVIFDLEVVMFLGILVSDL- 81
Cdd:MTH00060    8 FFVFFLLFLVIYFFHSGLWNNKIYSGGF--SWVSSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMPFQGLl 85

                          90       100       110
                  ....*....|....*....|....*....|
gi 1389449453  82 -NSLISFFMLLMFIFGGFYMEWWYGKLVWL 110
Cdd:MTH00060   86 fYNFWYYYFFLLLLFLGFVVELFSGYVRWV 115
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 4-109 7.59e-04

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 36.45  E-value: 7.59e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1389449453   4 LVMVVLFTLVLLFVFYIGNFVLSCKDFYKNKISSFECGFVSVGKIQNSFSIHFFIMMLMFVIFDLEV-VMFLGILVSDLN 82
Cdd:MTH00030   13 LLGVGIILLLVSISFTLGNSRIGLTKPDSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEIsFLFPWSIVFNQL 92

                          90       100       110
                  ....*....|....*....|....*....|
gi 1389449453  83 SLISFFMLLMFIFG---GFYMEWWYGKLVW 109
Cdd:MTH00030   93 NLFSFWIVYTFLIVlaiGLAYEWIKGGLEW 122
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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