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Conserved domains on  [gi|1388639979|gb|PWC45665|]
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hypothetical protein ACS03_02205 [Klebsiella variicola]

Protein Classification

YgdI/YgdR family lipoprotein( domain architecture ID 3632)

YgdI/YgdR family lipoprotein is a DUF903 domain-containing protein; similar to Escherichia coli lipoproteins, YgdI and YgdR

CATH:  2.30.30.100
Gene Ontology:  GO:0005886
SCOP:  4001696

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF903 super family cl05512
Bacterial protein of unknown function (DUF903); This family consists of several small ...
 2-72 4.59e-37

Bacterial protein of unknown function (DUF903); This family consists of several small bacterial proteins several of which are classified as putative lipoproteins. The function of this family is unknown.


The actual alignment was detected with superfamily member NF033216:

Pssm-ID: 471259  Cd Length: 71  Bit Score: 118.37  E-value: 4.59e-37
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1388639979  2 TKAAAIISACMLTLGLSACSSNYVMHTNDGRTIVTDGKPQTDNDTGMISYKDAWGNKQQINRSDVKQLGEL 72
Cdd:NF033216   1 KKLLAALLAALALLALAGCSSPYVITTNDGRTIVTDGKPEYDKDTGLYEYEDADGKTQQINKDDVKTIKEL 71
 
Name Accession Description Interval E-value
lipo_YgdI_YgdR NF033216
YgdI/YgdR family lipoprotein; Members of this family are exclusively lipoproteins of small ...
 2-72 4.59e-37

YgdI/YgdR family lipoprotein; Members of this family are exclusively lipoproteins of small size, including YgdI and YgdR from E. coli K-12.


Pssm-ID: 468001  Cd Length: 71  Bit Score: 118.37  E-value: 4.59e-37
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1388639979  2 TKAAAIISACMLTLGLSACSSNYVMHTNDGRTIVTDGKPQTDNDTGMISYKDAWGNKQQINRSDVKQLGEL 72
Cdd:NF033216   1 KKLLAALLAALALLALAGCSSPYVITTNDGRTIVTDGKPEYDKDTGLYEYEDADGKTQQINKDDVKTIKEL 71
DUF903 pfam06004
Bacterial protein of unknown function (DUF903); This family consists of several small ...
 23-71 1.35e-23

Bacterial protein of unknown function (DUF903); This family consists of several small bacterial proteins several of which are classified as putative lipoproteins. The function of this family is unknown.


Pssm-ID: 428717  Cd Length: 49  Bit Score: 83.75  E-value: 1.35e-23
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 1388639979 23 NYVMHTNDGRTIVTDGKPQTDNDTGMISYKDAWGNKQQINRSDVKQLGE 71
Cdd:pfam06004  1 PYVITTKDGRTIVTDGKPKYDKDTGMYEYEDEEGKEVQINKDDVKQIKE 49
PRK11622 PRK11622
ABC transporter substrate-binding protein;
1-63 2.68e-03

ABC transporter substrate-binding protein;


Pssm-ID: 183238 [Multi-domain]  Cd Length: 401  Bit Score: 34.16  E-value: 2.68e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1388639979   1 MTKAAAIISACMLTLGLSACSSNYVmhTNDGRTIVTDGKPQTdndtgmiSYKDAWGNKQQINR 63
Cdd:PRK11622    1 MMRILGLLLGLLSLLSLAACASDAE--NKDWQQILEEAKGQT-------VYFYAWGGSPAINR 54
 
Name Accession Description Interval E-value
lipo_YgdI_YgdR NF033216
YgdI/YgdR family lipoprotein; Members of this family are exclusively lipoproteins of small ...
 2-72 4.59e-37

YgdI/YgdR family lipoprotein; Members of this family are exclusively lipoproteins of small size, including YgdI and YgdR from E. coli K-12.


Pssm-ID: 468001  Cd Length: 71  Bit Score: 118.37  E-value: 4.59e-37
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1388639979  2 TKAAAIISACMLTLGLSACSSNYVMHTNDGRTIVTDGKPQTDNDTGMISYKDAWGNKQQINRSDVKQLGEL 72
Cdd:NF033216   1 KKLLAALLAALALLALAGCSSPYVITTNDGRTIVTDGKPEYDKDTGLYEYEDADGKTQQINKDDVKTIKEL 71
DUF903 pfam06004
Bacterial protein of unknown function (DUF903); This family consists of several small ...
 23-71 1.35e-23

Bacterial protein of unknown function (DUF903); This family consists of several small bacterial proteins several of which are classified as putative lipoproteins. The function of this family is unknown.


Pssm-ID: 428717  Cd Length: 49  Bit Score: 83.75  E-value: 1.35e-23
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 1388639979 23 NYVMHTNDGRTIVTDGKPQTDNDTGMISYKDAWGNKQQINRSDVKQLGE 71
Cdd:pfam06004  1 PYVITTKDGRTIVTDGKPKYDKDTGMYEYEDEEGKEVQINKDDVKQIKE 49
PRK11622 PRK11622
ABC transporter substrate-binding protein;
1-63 2.68e-03

ABC transporter substrate-binding protein;


Pssm-ID: 183238 [Multi-domain]  Cd Length: 401  Bit Score: 34.16  E-value: 2.68e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1388639979   1 MTKAAAIISACMLTLGLSACSSNYVmhTNDGRTIVTDGKPQTdndtgmiSYKDAWGNKQQINR 63
Cdd:PRK11622    1 MMRILGLLLGLLSLLSLAACASDAE--NKDWQQILEEAKGQT-------VYFYAWGGSPAINR 54
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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