Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, may play a role in assembly or oxygen delivery to the active site. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme (heme a3) and a copper ion (CuB). It also contains a low-spin heme (heme a), believed to participate in the transfer of electrons to the binuclear center. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from cytochrome c on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electrons are transferred from cytochrome c (the electron donor) to heme a via the CuA binuclear site in subunit II, and directly from heme a to the binuclear center.

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384022957   1 PMMINSPDMAFPRLNNMSFWLLPPSLFLLILSMMIGSGSGTGWTVYPP*SNNIFHSNMSVDLTIFSLHIAGISSILGAMN 80
Cdd:cd01663    75 PLMIGAPDMAFPRLNNLSFWLLPPSLLLLLLSALVEGGAGTGWTVYPPLSSILAHSGPSVDLAIFSLHLAGISSILGAIN 154

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1384022957  81 MITSIIIIRSKLMNMNKISLFPWSILLTSILLLLSLPVLA 120
Cdd:cd01663   155 FITTIFNMRAPGMTLEKMPLFVWSVLITAFLLLLSLPVLA 194

Cytochrome C and Quinol oxidase polypeptide I; Cytochrome c oxidase (E.C:7.1.1.9) is a key enzyme in aerobic metabolism. Proton pumping haem-copper oxidases represent the terminal, energy-transfer enzymes of respiratory chains in prokaryotes and eukaryotes. The CuB-haem a3 (or haem o) binuclear centre, associated with the largest subunit I of cytochrome c and ubiquinol oxidases (E.C:1.10.3.11), is directly involved in the coupling between dioxygen reduction and proton pumping. Some terminal oxidases generate a transmembrane proton gradient across the plasma membrane (prokaryotes) or the mitochondrial inner membrane (eukaryotes). The enzyme complex consists of 3-4 subunits (prokaryotes) up to 13 polypeptides (mammals) of which only the catalytic subunit (equivalent to mammalian subunit I (COXI) is found in all haem-copper respiratory oxidases. The presence of a bimetallic centre (formed by a high-spin haem and copper B) as well as a low-spin haem, both ligated to six conserved histidine residues near the outer side of four transmembrane spans within CO I is common to all family members.

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384022957   1 PMMINSPDMAFPRLNNMSFWLLPPSLFLLILSMMIGSgsgTGWTVYPP*snnifhsnMSVDLTIFSLHIAGISSILGAMN 80
Cdd:pfam00115  70 PLMIGARDMAFPRLNALSFWLVVLGAVLLLASFGGAT---TGWTEYPPL--------VGVDLWYIGLLLAGVSSLLGAIN 138

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1384022957  81 MITSIIIIRSKLMNMnKISLFPWSILLTSILLLLSLPVLA 120
Cdd:pfam00115 139 FIVTILKRRAPGMTL-RMPLFVWAILATAILILLAFPVLA 177

Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, may play a role in assembly or oxygen delivery to the active site. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme (heme a3) and a copper ion (CuB). It also contains a low-spin heme (heme a), believed to participate in the transfer of electrons to the binuclear center. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from cytochrome c on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electrons are transferred from cytochrome c (the electron donor) to heme a via the CuA binuclear site in subunit II, and directly from heme a to the binuclear center.

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384022957   1 PMMINSPDMAFPRLNNMSFWLLPPSLFLLILSMMIGSGSGTGWTVYPP*SNNIFHSNMSVDLTIFSLHIAGISSILGAMN 80
Cdd:cd01663    75 PLMIGAPDMAFPRLNNLSFWLLPPSLLLLLLSALVEGGAGTGWTVYPPLSSILAHSGPSVDLAIFSLHLAGISSILGAIN 154

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1384022957  81 MITSIIIIRSKLMNMNKISLFPWSILLTSILLLLSLPVLA 120
Cdd:cd01663   155 FITTIFNMRAPGMTLEKMPLFVWSVLITAFLLLLSLPVLA 194

cytochrome c oxidase subunit I; Provisional

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384022957   1 PMMINSPDMAFPRLNNMSFWLLPPSLFLLILSMMIGSGSGTGWTVYPP*SNNIFHSNMSVDLTIFSLHIAGISSILGAMN 80
Cdd:MTH00223   81 PLMLGAPDMAFPRLNNMSFWLLPPSLYLLLSSSAVESGVGTGWTVYPPLSSNLAHAGPSVDLAIFSLHLAGVSSILGAIN 160

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1384022957  81 MITSIIIIRSKLMNMNKISLFPWSILLTSILLLLSLPVLA 120
Cdd:MTH00223  161 FITTIINMRSPGMQLERLPLFVWSVKVTAFLLLLSLPVLA 200

cytochrome c oxidase subunit I; Provisional

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384022957   1 PMMINSPDMAFPRLNNMSFWLLPPSLFLLILSMMIGSGSGTGWTVYPP*SNNIFHSNMSVDLTIFSLHIAGISSILGAMN 80
Cdd:MTH00142   82 PLMLGAPDMAFPRMNNMSFWLLPPALLLLLSSAAVESGAGTGWTVYPPLSSNLAHSGGSVDLAIFSLHLAGVSSILGAIN 161

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1384022957  81 MITSIIIIRSKLMNMNKISLFPWSILLTSILLLLSLPVLA 120
Cdd:MTH00142  162 FITTVINMRAGGMKFERVPLFVWSVKITAILLLLSLPVLA 201

cytochrome c oxidase subunit I; Provisional

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384022957   1 PMMINSPDMAFPRLNNMSFWLLPPSLFLLILSMMIGSGSGTGWTVYPP*SNNIFHSNMSVDLTIFSLHIAGISSILGAMN 80
Cdd:MTH00077   84 PLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAIN 163

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1384022957  81 MITSIIIIRSKLMNMNKISLFPWSILLTSILLLLSLPVLA 120
Cdd:MTH00077  164 FITTSINMKPPSMSQYQTPLFVWSVLITAVLLLLSLPVLA 203

cytochrome c oxidase subunit I; Provisional

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384022957   1 PMMINSPDMAFPRLNNMSFWLLPPSLFLLILSMMIGSGSGTGWTVYPP*SNNIFHSNMSVDLTIFSLHIAGISSILGAMN 80
Cdd:MTH00183   84 PLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAIN 163

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1384022957  81 MITSIIIIRSKLMNMNKISLFPWSILLTSILLLLSLPVLA 120
Cdd:MTH00183  164 FITTIINMKPPAISQYQTPLFVWAVLITAVLLLLSLPVLA 203

cytochrome c oxidase subunit I; Provisional

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384022957   1 PMMINSPDMAFPRLNNMSFWLLPPSLFLLILSMMIGSGSGTGWTVYPP*SNNIFHSNMSVDLTIFSLHIAGISSILGAMN 80
Cdd:MTH00184   86 PLYIGAPDMAFPRLNNISFWLLPPALTLLLGSAFVEQGAGTGWTVYPPLSSIQAHSGGSVDMAIFSLHLAGISSILGAMN 165

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1384022957  81 MITSIIIIRSKLMNMNKISLFPWSILLTSILLLLSLPVLA 120
Cdd:MTH00184  166 FITTIFNMRAPGITMDRMPLFVWSILVTTFLLLLSLPVLA 205

cytochrome c oxidase subunit I; Provisional

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384022957   1 PMMINSPDMAFPRLNNMSFWLLPPSLFLLILSMMIGSGSGTGWTVYPP*SNnIFHSNMSVDLTIFSLHIAGISSILGAMN 80
Cdd:MTH00079   85 PLMLGAPDMSFPRLNNLSFWLLPTSLFLILDSCFVDMGPGTSWTVYPPLST-LGHPGSSVDLAIFSLHCAGISSILGGIN 163

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1384022957  81 MITSIIIIRSKLMNMNKISLFPWSILLTSILLLLSLPVLA 120
Cdd:MTH00079  164 FMVTTKNLRSSSISLEHMSLFVWTVFVTVFLLVLSLPVLA 203

Heme-copper oxidase subunit I. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which catalyze the reduction of O2 and simultaneously pump protons across the membrane. The superfamily is diverse in terms of electron donors, subunit composition, and heme types. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. It has been proposed that Archaea acquired heme-copper oxidases through gene transfer from Gram-positive bacteria. Membership in the superfamily is defined by subunit I, which contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons to the binuclear center. Only subunit I is common to the entire superfamily. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from the electron donor on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I of cytochrome c oxidase (CcO) and ubiquinol oxidase. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electron transfer occurs in two segments: from the electron donor to the low-spin heme, and from the low-spin heme to the binuclear center. The first segment can be a multi-step process and varies among the different families, while the second segment, a direct transfer, is consistent throughout the superfamily.

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384022957   1 PMMINSPDMAFPRLNNMSFWLLPPSLFLLILSMMIGSGSGTGWTVYPP*SNNIFHSNMSVDLTIFSLHIAGISSILGAMN 80
Cdd:cd00919    72 PPLIGARDLAFPRLNNLSFWLFPPGLLLLLSSVLVGGGAGTGWTFYPPLSTLSYSSGVGVDLAILGLHLAGVSSILGAIN 151

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1384022957  81 MITSIIIIRSKLMNMNKISLFPWSILLTSILLLLSLPVLA 120
Cdd:cd00919   152 FITTILNMRAPGMTLDKMPLFVWSVLVTAILLLLALPVLA 191

Ubiquinol oxidase subunit I. Ubiquinol oxidase, the terminal oxidase in the respiratory chains of aerobic bacteria, is a multi-chain transmembrane protein located in the cell membrane. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits in ubiquinol oxidase varies from two to five. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons from ubiquinol to the binuclear center. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from ubiquinol on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I. It is generally believed that the channels contain water molecules that act as 'proton wires' to transfer the protons. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electrons are believed to be transferred directly from ubiquinol (the electron donor) to the low-spin heme, and directly from the low-spin heme to the binuclear center.

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384022957   1 PMMINSPDMAFPRLNNMSFWLLPPSLFLLILSMMIGSGSGTGWTVYPP*SNNIFHSNMSVDLTIFSLHIAGISSILGAMN 80
Cdd:cd01662    78 PLQIGARDVAFPRLNALSFWLFLFGGLLLNASLLIGGFPDAGWFAYPPLSGLEYSPGVGVDYWILGLQFSGIGTLLGAIN 157

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1384022957  81 MITSIIIIRSKLMNMNKISLFPWSILLTSILLLLSLPVLA 120
Cdd:cd01662   158 FIVTILKMRAPGMTLMRMPIFTWTTLVTSILILFAFPVLT 197

cytochrome o ubiquinol oxidase subunit I; Provisional

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384022957   1 PMMINSPDMAFPRLNNMSFWLLPPSLFLLILSMMIGSGSGTGWTVYPP*SNNIFHSNMSVDLTIFSLHIAGISSILGAMN 80
Cdd:PRK15017  128 PLQIGARDVAFPFLNNLSFWFTVVGVILVNVSLGVGEFAQTGWLAYPPLSGIEYSPGVGVDYWIWSLQLSGIGTTLTGIN 207

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1384022957  81 MITSIIIIRSKLMNMNKISLFPWSILLTSILLLLSLPVL 119
Cdd:PRK15017  208 FFVTILKMRAPGMTMFKMPVFTWASLCANVLIIASFPIL 246

cytochrome aa3 quinol oxidase, subunit I; This family (QoxB) encodes subunit I of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site. [Energy metabolism, Electron transport]

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1384022957   1 PMMINSPDMAFPRLNNMSFWLLPPSLFLLILSMMIGSGSGTGWTVYPP*SNNIFHSNMSVDLTIFSLHIAGISSILGAMN 80
Cdd:TIGR02882 121 PLQIGARDVAFPVLNALSFWLFFAGAMLFNISFVIGGSPDAGWTNYAPLAGPEFSPGVGVNYYLIALQISGIGTLMTGIN 200

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1384022957  81 MITSIIIIRSKLMNMNKISLFPWSILLTSILLLLSLPVL 119
Cdd:TIGR02882 201 FFVTILKMRAPGMKLMQMPMFTWTTLITTLIIIFAFPVL 239