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Conserved domains on  [gi|1383769843|gb|AWD75156|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Phoenicircus nigricollis]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-342 1.23e-149

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 424.62  E-value: 1.23e-149
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843   1 ASLITAMSLLLGTIITISSNHWMMAWAGLEINTLAILPLISKSHHPRAIEASTKYFLTQAVASTLLLFSSMTNAWFTGQW 80
Cdd:MTH00112    5 AKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843  81 DITQLTHPTSCMLLTAAISMKLGLVPFHFWFPEVLQGSSLMTSMLLATIMKFPPITLLSLSSSSLNPALLSGMAIASTAL 160
Cdd:MTH00112   85 DITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLI 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 161 GGWMGLNQTQVRKILAFSSISHLGWMIIILIYNPMLTLLTFYLYSMMTTAIFLTLNATNTLKLSSLMTAWTKIPPLTTVL 240
Cdd:MTH00112  165 GGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTL 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 241 MLTLLSLAGLPPLAGFLPKWLIIQELTKQELTTIATIITLLSLLGLFFYLRLAYCATITLPPSPTNHMKQWQINKSVPTL 320
Cdd:MTH00112  245 MLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTL 324

                         330       340
                  ....*....|....*....|..
gi 1383769843 321 TTALTTLSIMLLPLSPMILTTL 342
Cdd:MTH00112  325 TATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-342 1.23e-149

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 424.62  E-value: 1.23e-149
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843   1 ASLITAMSLLLGTIITISSNHWMMAWAGLEINTLAILPLISKSHHPRAIEASTKYFLTQAVASTLLLFSSMTNAWFTGQW 80
Cdd:MTH00112    5 AKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843  81 DITQLTHPTSCMLLTAAISMKLGLVPFHFWFPEVLQGSSLMTSMLLATIMKFPPITLLSLSSSSLNPALLSGMAIASTAL 160
Cdd:MTH00112   85 DITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLI 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 161 GGWMGLNQTQVRKILAFSSISHLGWMIIILIYNPMLTLLTFYLYSMMTTAIFLTLNATNTLKLSSLMTAWTKIPPLTTVL 240
Cdd:MTH00112  165 GGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTL 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 241 MLTLLSLAGLPPLAGFLPKWLIIQELTKQELTTIATIITLLSLLGLFFYLRLAYCATITLPPSPTNHMKQWQINKSVPTL 320
Cdd:MTH00112  245 MLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTL 324

                         330       340
                  ....*....|....*....|..
gi 1383769843 321 TTALTTLSIMLLPLSPMILTTL 342
Cdd:MTH00112  325 TATLTTLSTLLLPLSPMILTII 346
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 10-294 1.13e-30

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 120.99  E-value: 1.13e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843  10 LLGTIITISSNHWMMAWAGLEINTLAILPLIS-KSHHPRAIEASTKYFLTQAVASTLLLF-SSMTNAwFTGQWDITQLTH 87
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIAA 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843  88 PTS------------CMLLTAAISMKLGLVPFHFWFPEVLQGSSLMTSMLLATIMK--------------FPPITLLSLS 141
Cdd:COG1007   191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafaallrllveaFPGLAADWQL 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 142 SSSLnpallsgMAIASTALGGWMGLNQTQVRKILAFSSISHLGWMIIILI-YNPM-LTLLTFYL--YSMMTTAIFLTLNA 217
Cdd:COG1007   271 LLAV-------LAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAaGTPLgVSAALFYLlaYLFMNLGAFAVILL 343

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 218 -----TNTLKLSSLMTAWTKIPPLTTVLMLTLLSLAGLPPLAGFLPKWLIIQELTKQELTTIATIITLLSLLGLFFYLRL 292
Cdd:COG1007   344 lsrkgGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRV 423


                  ..
gi 1383769843 293 AY 294
Cdd:COG1007   424 VK 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 19-282 1.32e-23

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 98.54  E-value: 1.32e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843  19 SNHWMMAWAGLEINTLAILPLI-SKSHHPRAIEASTKYFLTQAVASTLLLFSSMTNAWFTGQWDITQLTHPTSCM----- 92
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843  93 ------LLTAAISMKLGLVPFHFWFPEVLQGSSLMTSMLLATIMK------FPPITLLSLSSSSLNPALLSGMAIASTAL 160
Cdd:pfam00361  81 llllflLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVkaggygLIRRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 161 GGWMGLNQTQVRKILAFSSISHLGWMIIIL----IYNPMLTLLTFYLYSMMTTAIFL-----TLNATNTLKLSSLMTAWT 231
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1383769843 232 KIPPLTTVLMLTLLSLAGLPPLAGFLPKWLIIQELTKQELTTIATIITLLS 282
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 10-293 9.22e-22

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 95.79  E-value: 9.22e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843  10 LLGTIITISSNHWMMAWAGLEINTLAILPLIS-KSHHPRAIEASTKYFLTQAVASTLLLFSSMTNAWFTGQWDITQLTHP 88
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843  89 TSC------------MLLTAAISMKLGLVPFHFWFPEVLQGSSLMTSMLLATIMK---FPPITLLSLSSSSLNPALLSGM 153
Cdd:TIGR01770 192 LSNgmlnisllllgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYILFGFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 154 ----AIASTALGGWMGLNQTQVRKILAFSSISHLGWMIIILIYNPMLTL--LTFYL--YSMMTTAIFLTLNATNTLKLS- 224
Cdd:TIGR01770 272 laiiAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkaVLFYIfiYALMSLGAFGVLSLLRSYKDEw 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1383769843 225 ----SLMTAWTKIPPLTTVLMLTLL-SLAGLPPLAGFLPKWLIIQELTKQELTTIATIITLLSLLGLFFYLRLA 293
Cdd:TIGR01770 352 ieyiSDFAGLFKTNPILAILILIFMfSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-342 1.23e-149

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 424.62  E-value: 1.23e-149
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843   1 ASLITAMSLLLGTIITISSNHWMMAWAGLEINTLAILPLISKSHHPRAIEASTKYFLTQAVASTLLLFSSMTNAWFTGQW 80
Cdd:MTH00112    5 AKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843  81 DITQLTHPTSCMLLTAAISMKLGLVPFHFWFPEVLQGSSLMTSMLLATIMKFPPITLLSLSSSSLNPALLSGMAIASTAL 160
Cdd:MTH00112   85 DITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLI 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 161 GGWMGLNQTQVRKILAFSSISHLGWMIIILIYNPMLTLLTFYLYSMMTTAIFLTLNATNTLKLSSLMTAWTKIPPLTTVL 240
Cdd:MTH00112  165 GGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTL 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 241 MLTLLSLAGLPPLAGFLPKWLIIQELTKQELTTIATIITLLSLLGLFFYLRLAYCATITLPPSPTNHMKQWQINKSVPTL 320
Cdd:MTH00112  245 MLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTL 324

                         330       340
                  ....*....|....*....|..
gi 1383769843 321 TTALTTLSIMLLPLSPMILTTL 342
Cdd:MTH00112  325 TATLTTLSTLLLPLSPMILTII 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 7-342 1.25e-121

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 353.73  E-value: 1.25e-121
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843   7 MSLLLGTIITISSNHWMMAWAGLEINTLAILPLISKSHHPRAIEASTKYFLTQAVASTLLLFSSMTNAWFTGQWDITQLT 86
Cdd:MTH00135   11 FSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQQMS 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843  87 HPTSCMLLTAAISMKLGLVPFHFWFPEVLQGSSLMTSMLLATIMKFPPITLLSLSSSSLNPALLSgMAIASTALGGWMGL 166
Cdd:MTH00135   91 HPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPTNPTLLIT-LGLTSTLVGGWGGL 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 167 NQTQVRKILAFSSISHLGWMIIILIYNPMLTLLTFYLYSMMTTAIFLTLNATNTLKLSSLMTAWTKIPPLTTVLMLTLLS 246
Cdd:MTH00135  170 NQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLILLS 249

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 247 LAGLPPLAGFLPKWLIIQELTKQELTTIATIITLLSLLGLFFYLRLAYCATITLPPSPTNHMKQWQINKSVPTLTT-ALT 325
Cdd:MTH00135  250 LGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQLTLPLaIST 329

                         330
                  ....*....|....*..
gi 1383769843 326 TLSIMLLPLSPMILTTL 342
Cdd:MTH00135  330 TATLMLLPLTPAILALL 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-342 1.76e-118

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 345.75  E-value: 1.76e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843   1 ASLITAMSLLLGTIITISSNHWMMAWAGLEINTLAILPLISKSHHPRAIEASTKYFLTQAVASTLLLFSSMTNAWFTGQW 80
Cdd:MTH00070    5 ALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGEW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843  81 DITQLTHPTSCMLLTAAISMKLGLVPFHFWFPEVLQGSSLMTSMLLATIMKFPPITLLSLSSSSLNPALLSGMAIASTAL 160
Cdd:MTH00070   85 TIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLI 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 161 GGWMGLNQTQVRKILAFSSISHLGWMIIILIYNPMLTLLTFYLYSMMTTAIFLTLNATNTLKLSSLMTAWTKIPPLTTVL 240
Cdd:MTH00070  165 GGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMM 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 241 MLTLLSLAGLPPLAGFLPKWLIIQELTKQELTTIATIITLLSLLGLFFYLRLAYCATITLPPSPTNHMKQWQINKSVPTL 320
Cdd:MTH00070  245 MLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNKTNNL 324

                         330       340
                  ....*....|....*....|..
gi 1383769843 321 TTALTTLSIMLLPLSPMILTTL 342
Cdd:MTH00070  325 LSLTIILSLMLLPITPTILNLF 346
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-340 2.38e-107

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 317.56  E-value: 2.38e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843   1 ASLITAMSLLLGTIITISSNHWMMAWAGLEINTLAILPLISKSHHPRAIEASTKYFLTQAVASTLLLFSSMTNAWFTGQW 80
Cdd:MTH00105    5 ILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843  81 DITQLTHPTSCMLLTAAISMKLGLVPFHFWFPEVLQGSSLMTSMLLATIMKFPPITLLSLSSSSLNPALLSGMAIASTAL 160
Cdd:MTH00105   85 TITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSILI 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 161 GGWMGLNQTQVRKILAFSSISHLGWMIIILIYNPMLTLLTFYLYSMMTTAIFLTLNATNTLKLSSLMTAWTKIPPLTTVL 240
Cdd:MTH00105  165 GGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLI 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 241 MLTLLSLAGLPPLAGFLPKWLIIQELTKQELTTIATIITLLSLLGLFFYLRLAYCATITLPPSPTNHMKQWQINKSVPTL 320
Cdd:MTH00105  245 LLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENTKPMT 324

                         330       340
                  ....*....|....*....|.
gi 1383769843 321 TT-ALTTLSIMLLPLSPMILT 340
Cdd:MTH00105  325 LLpTLIILSTMLLPLTPMLSI 345
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 2-342 3.12e-86

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 263.75  E-value: 3.12e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843   2 SLITAMSLLLGTIITISSNHWMMAWAGLEINTLAILPLISKSHHPRAIEASTKYFLTQAVASTLLLFSSMTNAWFTGQWD 81
Cdd:MTH00200    6 LPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWG 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843  82 ITQLTHPTSCMLLTAAISMKLGLVPFHFWFPEVLQGSSLMTSMLLATIMKFPPITLLSLSSSSLNPALLSGMAIASTALG 161
Cdd:MTH00200   86 ISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSVLVG 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 162 GWMGLNQTQVRKILAFSSISHLGWMIIILIYNPMLTLLTFYLYSMMTTAIFLTLNATNTLKLSSLMTAWTKIPPLTTVLM 241
Cdd:MTH00200  166 GWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLG 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 242 LTLLSLAGLPPLAGFLPKWLIIQELTKQELTTIATIITLLSLLGLFFYLRLAYCATITLPPSPTNHMKQWQINKSVPTLT 321
Cdd:MTH00200  246 LTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSNSNLLV 325

                         330       340
                  ....*....|....*....|.
gi 1383769843 322 TALTTLSIMLLPLSPMILTTL 342
Cdd:MTH00200  326 GLLLLLSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 8-332 4.93e-76

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 237.52  E-value: 4.93e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843   8 SLLLGTIITISSNHWMMAWAGLEINTLAILPLISKSHHPRAIEASTKYFLTQAVASTLLLFSSMTNAWFTGQWDITQLTH 87
Cdd:MTH00041   12 SIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPLN 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843  88 PTSCMLLTAAISMKLGLVPFHFWFPEVLQGSSLMTSMLLATIMKFPPITLLSLSSSSLNPALLSGMAIASTALGGWMGLN 167
Cdd:MTH00041   92 TLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGLN 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 168 QTQVRKILAFSSISHLGWMIIILIYNPMLTLLTFYLYSMMTTAIFLTLNATNTLKLSSLMTAWTKIPPLTTVLMLTLLSL 247
Cdd:MTH00041  172 QTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILSL 251

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 248 AGLPPLAGFLPKWLIIQELTKQELTTIATIITLLSLLGLFFYLRLAYCATITLPPSPTNHMKQWQINKSVPTLTTALTTL 327
Cdd:MTH00041  252 GGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNITVYGVILSIL 331


                  ....*
gi 1383769843 328 SIMLL 332
Cdd:MTH00041  332 SSISI 336
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 2-339 4.74e-55

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 183.10  E-value: 4.74e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843   2 SLITAMSLLLGTIITISSNHWMMAWAGLEINTLAILPLISKSHHPRAIEASTKYFLTQAVASTLLLFSSMTNAWFTGqwd 81
Cdd:MTH00160    7 KLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLNLM--- 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843  82 itqLTHPTSCMLLTAAISMKLGLVPFHFWFPEVLQGSSLMTSMLLATIMKFPPITLLSLSSSSLNPALlsgMAIASTALG 161
Cdd:MTH00160   84 ---LFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNFIII---IIILSAIIG 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 162 GWMGLNQTQVRKILAFSSISHLGWMIIILIYNPMLTLLTFYLYSMMTTAIFLTLNATNTLKLSSLMTAWTKIPPLTTVLM 241
Cdd:MTH00160  158 AIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLF 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 242 LTLLSLAGLPPLAGFLPKWLIIQELTKQELTTIATIITLLSLLGLFFYLRLAYCATITLPPSpTNHMKQWQINKSVPTLT 321
Cdd:MTH00160  238 LNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNK-NKWNLKKKKNKFSLILN 316

                         330
                  ....*....|....*...
gi 1383769843 322 TALTTLSIMLLPLSPMIL 339
Cdd:MTH00160  317 FLSFISLFGLILSSLLFL 334
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 9-298 2.18e-48

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 165.44  E-value: 2.18e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843   9 LLLGTIITISSNHWMMAWAGLEINTLAILPLISKSHHPRAIEASTKYFLTQAVASTLLLFSSMTNAWFTGQWDITqlthp 88
Cdd:MTH00144   13 MVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSM----- 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843  89 tscMLLTAAISMKLGLVPFHFWFPEVLQGSSLMTSMLLATIMKFPPI-TLLSLSSSSLNPALLSGMAIASTALGGWMGLN 167
Cdd:MTH00144   88 ---SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLfLLSNFLDLYWLAYLLCVISVLSALVGSIGGLN 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 168 QTQVRKILAFSSISHLGWMIIILIYNPMLTLLTFYLYSMMTTAIFLTLNATNTLKLSSlMTAWTKIPPLTTVLMLTLLSL 247
Cdd:MTH00144  165 QTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKD-LGSLKPSYKTGLSIISLLLSL 243

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1383769843 248 AGLPPLAGFLPKWLIIQELTKQELTTIATIITLLSLLGLFFYLRLAYCATI 298
Cdd:MTH00144  244 GGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 8-292 6.98e-43

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 151.09  E-value: 6.98e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843   8 SLLLGTIITISSNHWMMAWAGLEINTLAILPLISKSHHPRAIEASTKYFLTQAVASTLLLFSSmtnawfTGQWDITQLTH 87
Cdd:MTH00011   14 TMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSFPSLLK 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843  88 PTSCMLLTAAISMKLGLVPFHFWFPEVLQGSSLMTSMLLATIMKFPPITLLSLSSSSLNPALLSGMAIASTALGGWMGLN 167
Cdd:MTH00011   88 NITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMN 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 168 QTQVRKILAFSSISHLGWMIIILIYNPMLTLLTFYLYSMMTTAIFLTLNATNTLKLSSLMTAWTKIPPLTTVLMLTLLSL 247
Cdd:MTH00011  168 QTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSL 247

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 1383769843 248 AGLPPLAGFLPKWLIIQELTKQELTTIATIITLLSLLGLFFYLRL 292
Cdd:MTH00011  248 GGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNL 292
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-294 8.35e-39

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 140.19  E-value: 8.35e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843   8 SLLLGTIITISSNHWMMAWAGLEINTLAILPLISKSHHPRAIEASTKYFLTQAVASTLLLFSSMtnAWFTGQWditqlTH 87
Cdd:MTH00197    6 IIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGS--LSFSNLY-----LS 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843  88 PTSCMLLTAAISMKLGLVPFHFWFPEVLQGSSLMTSMLLATIMKFPPITLLSLSSSSLNPALLSGmaIASTALGGWMGLN 167
Cdd:MTH00197   79 LLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFMGLLICS--VLSSLIGGIGGMN 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 168 QTQVRKILAFSSISHLGWMIIILIYNPMLTLLTFYLYSMMTTAIFLTLNATNTLKLSSLMTAWTKIPPLTTVLMLTLLSL 247
Cdd:MTH00197  157 QSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSL 236

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 1383769843 248 AGLPPLAGFLPKWLIIQELTKQELTTIATIITLLSLLGLFFYLRLAY 294
Cdd:MTH00197  237 GGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAY 283
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 10-294 1.13e-30

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 120.99  E-value: 1.13e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843  10 LLGTIITISSNHWMMAWAGLEINTLAILPLIS-KSHHPRAIEASTKYFLTQAVASTLLLF-SSMTNAwFTGQWDITQLTH 87
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIAA 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843  88 PTS------------CMLLTAAISMKLGLVPFHFWFPEVLQGSSLMTSMLLATIMK--------------FPPITLLSLS 141
Cdd:COG1007   191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafaallrllveaFPGLAADWQL 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 142 SSSLnpallsgMAIASTALGGWMGLNQTQVRKILAFSSISHLGWMIIILI-YNPM-LTLLTFYL--YSMMTTAIFLTLNA 217
Cdd:COG1007   271 LLAV-------LAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAaGTPLgVSAALFYLlaYLFMNLGAFAVILL 343

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 218 -----TNTLKLSSLMTAWTKIPPLTTVLMLTLLSLAGLPPLAGFLPKWLIIQELTKQELTTIATIITLLSLLGLFFYLRL 292
Cdd:COG1007   344 lsrkgGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRV 423


                  ..
gi 1383769843 293 AY 294
Cdd:COG1007   424 VK 425
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
10-292 4.05e-25

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 105.29  E-value: 4.05e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843  10 LLGTIITISSNHWMMAWAGLEINTLAILPLIS-KSHHPRAIEASTKYFLTQAVASTLLLFSSMTNAWFTGQWDITQLTHP 88
Cdd:PRK05777  113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKA 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843  89 TS------------CMLLTAAISMKLGLVPFHFWFPEVLQGSSLMTSMLLATIMK---FPPIT----LLSLSSSSLNPAL 149
Cdd:PRK05777  193 LAdgsgnsllllfgLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaaFAVLLrllvVAFGGLSEDWQQV 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 150 LSGMAIASTALGGWMGLNQTQVRKILAFSSISHLGWMIIILIYNPMLTL--LTFYL--YSMMTTAIFLTL--------NA 217
Cdd:PRK05777  273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYLlaYLFMTLGAFGVIsllrrkggEA 352

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1383769843 218 TNTLKLSSLmtAWTKiPPLTTVLMLTLLSLAGLPPLAGFLPKWLIIQELTKQELTTIATIITLLSLLGLFFYLRL 292
Cdd:PRK05777  353 ESISDFAGL--SKRS-PLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 9-292 4.27e-24

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 101.26  E-value: 4.27e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843   9 LLLGTIITISSNHWMMAWAGLEINTLAILPLI-SKSHHPRAIEASTKYFLTQAVASTLLLFS-------------SMTNA 74
Cdd:MTH00196    2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843  75 WFTGQWDITQLTHPTSCMLLTAAISMKLGLVPFHFWFPEVLQGSSLMTSMLLATIMKFPPITLLSLSSSSLNPALLSGma 154
Cdd:MTH00196   82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNILLIGG-- 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 155 IASTALGGWMGLNQTQVRKILAFSSISHLGWMIIILIYNPM----LTLLTFYLYSMMTTAIFLTLNATNTLK--LSSLMT 228
Cdd:MTH00196  160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSFesiqASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSG 239

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1383769843 229 AWTKIPPLTTVLMLTLLSLAGLPPLAGFLPKWLIIQELTKQELTTIATIITLLSLLGLFFYLRL 292
Cdd:MTH00196  240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 19-282 1.32e-23

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 98.54  E-value: 1.32e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843  19 SNHWMMAWAGLEINTLAILPLI-SKSHHPRAIEASTKYFLTQAVASTLLLFSSMTNAWFTGQWDITQLTHPTSCM----- 92
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843  93 ------LLTAAISMKLGLVPFHFWFPEVLQGSSLMTSMLLATIMK------FPPITLLSLSSSSLNPALLSGMAIASTAL 160
Cdd:pfam00361  81 llllflLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVkaggygLIRRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 161 GGWMGLNQTQVRKILAFSSISHLGWMIIIL----IYNPMLTLLTFYLYSMMTTAIFL-----TLNATNTLKLSSLMTAWT 231
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1383769843 232 KIPPLTTVLMLTLLSLAGLPPLAGFLPKWLIIQELTKQELTTIATIITLLS 282
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 10-293 9.22e-22

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 95.79  E-value: 9.22e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843  10 LLGTIITISSNHWMMAWAGLEINTLAILPLIS-KSHHPRAIEASTKYFLTQAVASTLLLFSSMTNAWFTGQWDITQLTHP 88
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843  89 TSC------------MLLTAAISMKLGLVPFHFWFPEVLQGSSLMTSMLLATIMK---FPPITLLSLSSSSLNPALLSGM 153
Cdd:TIGR01770 192 LSNgmlnisllllgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYILFGFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 154 ----AIASTALGGWMGLNQTQVRKILAFSSISHLGWMIIILIYNPMLTL--LTFYL--YSMMTTAIFLTLNATNTLKLS- 224
Cdd:TIGR01770 272 laiiAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkaVLFYIfiYALMSLGAFGVLSLLRSYKDEw 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1383769843 225 ----SLMTAWTKIPPLTTVLMLTLL-SLAGLPPLAGFLPKWLIIQELTKQELTTIATIITLLSLLGLFFYLRLA 293
Cdd:TIGR01770 352 ieyiSDFAGLFKTNPILAILILIFMfSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 9-292 8.59e-21

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 92.77  E-value: 8.59e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843   9 LLLGTIITISSNHWMMAWAGLEINTLAILPLIS-KSHHPRAIEASTKYFLTQAVASTLLLFSSMTNAWFTGQWDI----T 83
Cdd:MTH00199  106 VALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqginS 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843  84 QLTHPTSCMLLTAAISMKLGLVPFHFWFPEVLQGSSLMTSMLLATIMKFPPITLLSLSSSSLNPALLSgmAIASTALGGW 163
Cdd:MTH00199  186 ILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSIIYGAI 263

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 164 MGLNQTQVRKILAFSSISHLGWMIIILIYNP----MLTLLTFYLYSMMTTAIF---LTLNATNTLkLSSLMTAWTKIPPL 236
Cdd:MTH00199  264 GALNQTKIKRLLAYSGIGHMGFILFGVAIGSfesiQASLIYMIIYVIMSICSFsiiLSLKLTKGL-IVEVSGLSRKNPVI 342

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1383769843 237 TTVLMLTLLSLAGLPPLAGFLPKWLIIQELTKQELTTIATIITLLSLLGLFFYLRL 292
Cdd:MTH00199  343 ALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 9-292 9.62e-20

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 89.44  E-value: 9.62e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843   9 LLLGTIITISSNHWMMAWAGLEINTLAILPLISKSHHPRAIEASTKYFLTQAVASTLLLFSSMTNAWFTGQWDITQLTH- 87
Cdd:COG0651   116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAr 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843  88 ---------PTSCMLLTAAISMKLGLVPFHFWFPEVLQGSSLMTSMLLATIMKFPPI--------TLLSLSSSSLNPALL 150
Cdd:COG0651   196 laeldpgllLAAFALLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLTKVGVyailrvltLLFGADPALFLGTLL 275

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 151 SGMAIASTALGGWMGLNQTQVRKILAFSSISHLGWMII-ILIYNPM-LTLLTFYL--YSMMTTAIFLT----LNATNTLK 222
Cdd:COG0651   276 LVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLgLGLGTPLgLAGALFHLlnHALAKALLFLAagaiERATGTRD 355

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 223 LSSLMTAWTKIPPLTTVLMLTLLSLAGLPPLAGFLPKWLIIQELTKQELTTIATIITLLSLLGLFFYLRL 292
Cdd:COG0651   356 LDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 11-292 4.40e-15

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 76.05  E-value: 4.40e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843  11 LGTIITISSNHWMMAWAGLEINTLAILPLISKSHHPRAI---------EASTKYFLTQAVASTLLLFSSMTNAWFTGQ-- 79
Cdd:MTH00198  199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNeg 278

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843  80 --WDITQLTHPTS----------CMLLTAAISMKLGLVPFHFWFPEVLQGSSLMTSMLLATIMKFppITLLSLSSSSLNP 147
Cdd:MTH00198  279 mlGTILSATLETTnielrqgslgYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITS 356

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 148 ALLSGMAIASTALGGWMGLNQTQVRKILAFSSISHLGWMIIIL---IYNPMLTLLTFYLYSMMTTAIFLTL--------- 215
Cdd:MTH00198  357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVsagTYESLQASWTYAVTYLVSALASFTVictleefgt 436

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 216 -------------NATNTLKLSSLMTAWTKIPPLTTVLMLTLLSLAGLPPLAGFLPKWLIIQELTKQELTTIATIITLLS 282
Cdd:MTH00198  437 rtptsrqrdgsfgNYNLVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIAFSSSLSIYYLVA 516

                         330
                  ....*....|....*..
gi 1383769843 283 LLGL-------FFYLRL 292
Cdd:MTH00198  517 LFAIictcisaFYYIRI 533
ndhB CHL00049
NADH dehydrogenase subunit 2
 47-318 2.12e-10

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 61.56  E-value: 2.12e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843  47 RAIEASTKYFLTQAVASTLLL--FSsmtnaWFTGQ-------WDI------TQLTHPTSC----MLLTAAISMKLGLVPF 107
Cdd:CHL00049  159 RSNEATMKYLLMGGASSSILVygFS-----WLYGLsggeielQEIvnglinTQMYNSPGIsialIFITVGIGFKLSLAPF 233

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 108 HFWFPEVLQGS-----------SLMTSMLLATIM---KFPPITLLSLSSSSLnpallsgMAIASTALGGWMGLNQTQVRK 173
Cdd:CHL00049  234 HQWTPDVYEGSptpvvaflsvtSKVAASALATRIfdiPFYFSSNEWHLLLEI-------LAILSMILGNLIAITQTSMKR 306

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 174 ILAFSSISHLGWMIIILI-------YNPMLTLLTFYlysmmttaIFLTLNATNTLKLSSLMTA----------WTKIPPL 236
Cdd:CHL00049  307 MLAYSSIGQIGYVIIGIIvgdsndgYASMITYMLFY--------IFMNLGTFACIVLFGLRTGtdnirdyaglYTKDPFL 378

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 237 TTVLMLTLLSLAGLPPLAGFLPKWLIIQELTKQELTTIATIITLLSLLGLFFYLRLAYCATITLPPSPTNHMKQWQINKS 316
Cdd:CHL00049  379 ALSLALCLLSLGGIPPLAGFFGKLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLKIIKLLMTGRNQEITPYVRNYRRSPL 458


                  ..
gi 1383769843 317 VP 318
Cdd:CHL00049  459 RS 460
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 29-307 1.03e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 56.43  E-value: 1.03e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843  29 LEINTLAILPLISKSHHPRAIEASTKYFLTQAVASTLLLFS-SMTNAwFTGQWDITQLTH--PTSCMLLTA------AIS 99
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLAGalAENPTVVTAfgfvllALA 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 100 MKLGLVPFHFWFPEVLQG-SSLMTSMLLATIMKFP---------PITLLSLSSSSLNPALLSGMAIASTALGGWMGLNQT 169
Cdd:PRK08375  214 LKAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAvyaliriyfTVFGGDFRFALGLGWLLAVLALLSMLVGSLAALGQD 293

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 170 QVRKILAFSSISHLGWMII-ILIYNP-MLTLLTFYL--YSMMTTAIFLTLNA----TNTLKLSSLMTAWTKIPPLTTVLM 241
Cdd:PRK08375  294 DVKRVLAYSTVSQMGYILLgLALLTPlALAAGLLHLlhHALMKGALFLAAGAievtYGTRRLSELSGLGRRMPLTAAAFA 373

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1383769843 242 LTLLSLAGLPPLAGFLPKWLIIQELTKQELTTIATIITLLSLLGLFFYLRLAYCATITLPPSPTNH 307
Cdd:PRK08375  374 VASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYRAFFGPPPPGSEA 439
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 29-283 2.23e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 55.49  E-value: 2.23e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843  29 LEINTLAILPLIS-KSHHPRAIEASTKYFLTQAVASTLLLFSSmtnAWFTGQWDITQLTHPTSCM-------------LL 94
Cdd:PRK08376  150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTLNMAYLAVKMsenptvvakialaLF 226

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843  95 TAAISMKLGLVPFHFWFPEVL-QGSSLMTSMLLAT-------IMKFPPITLLSLSSSSLNPALLSGMAIASTALGGWMGL 166
Cdd:PRK08376  227 IAGLAMKSGAVPVHMWLPDAYpAAPSSISAMLLVIkqaglyaLARVLFSIYGPAINLATVGWVIIILGCLTMFVGVAMAV 306

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 167 NQTQVRKILAFSSISHLGWMII-----ILIYNPmlTLLTFYLYSMMTTAIFLTLN-----------------ATNTLKLS 224
Cdd:PRK08376  307 VQKDVKRLLAYHSVSQIGYMLLglgvgLAALGD--PAMASYGEIALAGGIYHIVNhalykallfltagaviyETGTRNLN 384

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1383769843 225 SLMTAWTKIPPLTTVLMLTLLSLAGLPPLAGFLPKWLIIQE--LTKQELTTIATIITLLSL 283
Cdd:PRK08376  385 ELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESsaLFNPILGVIAMIGSVLTL 445
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 45-288 3.73e-07

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 51.62  E-value: 3.73e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843  45 HPRAIEASTKYFLTQAVASTLLLFSSMTNAWFTGQW--DITQLTHPTSCM--------LLTAAISMKLGLVPFHFWFPEV 114
Cdd:COG1008   156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAAPLPLtaqlllflAFFIAFAVKVPMFPFHTWLPDA 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 115 LQGSSLMTSMLLATIMK--------------FPpitllslSSSSLNPALLSGMAIASTALGGWMGLNQTQVRKILAFSSI 180
Cdd:COG1008   236 HVEAPTAGSVLLAGVLLkmggygllrfalplFP-------EASAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSV 308

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 181 SHLGWMII-ILIYNPM-LTLLTFYLYS--MMTTAIFLTLNA----TNTLKLSSLMTAWTKIPPLTTVLMLTLLSLAGLPP 252
Cdd:COG1008   309 SHMGFVLLgIFALNPLgLQGAVLQMVShgLITAALFLLVGVlydrTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPG 388

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1383769843 253 LAGFLPKWLIIQELTKqelttIATIITLLSLLGLFF 288
Cdd:COG1008   389 TSGFVGEFLVLLGAFQ-----VNPWLAILAALGLIL 419
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 30-294 4.29e-07

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 51.54  E-value: 4.29e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843  30 EINTLAILPLISKSHHpRAIEASTKYFLTQAVASTLLLFSSMTNAWFTGQWDIT-------QLTHPTSCM----LLTAAI 98
Cdd:PRK08668  128 EIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFAdisqgliNDTSTGFALivflFLLAFG 206

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843  99 SMKLGLVPFHFWFPE-----------VLQGS-SLMTSMLLATIMKFPPITLLSLSSSSLNPALLSGMAIA-----STALG 161
Cdd:PRK08668  207 VAKAGIFPLHVWAPDayseapqsfsaVLSGQlSKLGAYGFLLVLYVLPGTKLFSEFGTYRGVPLFNYILAwlgniSIIVG 286

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 162 GWMGLNQTQVRKILAFSSISHLGWmiiILIYNPMLTLLTF-------YLYSMMTTAIFLTLNA----TNTLKLSSLMTAW 230
Cdd:PRK08668  287 TLMAILQEDIKKLIAYSSVANGGY---ILVGLGLGTSLGFagglfhvFNHALFKGLFFLIFAAviyrTGTTKISEMGGLI 363

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1383769843 231 TKIPPLTTVLMLTLLSLAGLPPLAGFLPKWLIIQELTKQELTTIATIITLLSLLGLFFYLRLAY 294
Cdd:PRK08668  364 EKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFGSIGSFLYVFRPLA 427
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 93-259 5.81e-07

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 51.08  E-value: 5.81e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843  93 LLTAAISmKLGLVPFHFWFPEVLQGSSLMTSMLLATIM---------KFPPitllSLSSSSLNPALLSGMAIASTALGGW 163
Cdd:PRK12644  209 ILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMvkagiylvaRLAP----GFADVPVWRPTVLVLGLATMLLGGW 283

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 164 MGLNQTQVRKILAFSSISHLGWMIIILIY---NPMLTLLTFYL-YSMMTTAIFLTL----NATNTLKLSSLMTAWTKIPP 235
Cdd:PRK12644  284 RALRQHDLKLILAYGTVSQLGFLTVLVGIgtrDAALAGLAMLLaHALFKAALFLVVgiidHSTGTRDIRKLSGLGRRQPV 363

                         170       180
                  ....*....|....*....|....
gi 1383769843 236 LTTVLMLTLLSLAGLPPLAGFLPK 259
Cdd:PRK12644  364 LAVVAALAAASMAGLPPLLGFVAK 387
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
46-259 1.03e-06

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 50.05  E-value: 1.03e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843  46 PRAIEASTKYFLTQAVASTLLLF-SSMTNAWFTGQwdiTQL--------THPT-----SCMLLTAAISMKLGLVPFHFWF 111
Cdd:PRK02504  157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGS---TQLsaialaliTSPSlglalALVFVIAGIAFKISAVPFHQWT 233

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 112 PEVLQGSSLMTSMLLATIMK--------------FPPITLLSLSSSSLnpallsgMAIASTALGGWMGLNQTQVRKILAF 177
Cdd:PRK02504  234 PDVYEGSPTPVVAFLSVGSKaagfalairllvtaFPSFDEQWKLLFTA-------LAILSMVLGNVVALAQTSMKRMLAY 306

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 178 SSISHLGWMIIILI------YNPMLTLLTFYLYSMMT--TAIFLTLNATNTLKLSSLMTAWTKIPPLTTVLMLTLLSLAG 249
Cdd:PRK02504  307 SSIGQAGFVMIGLVagteagYASMVFYLLAYLFMNLGafACVILFSLRTGTDQISDYAGLYQKDPLLTLGLSLCLLSLGG 386

                         250
                  ....*....|
gi 1383769843 250 LPPLAGFLPK 259
Cdd:PRK02504  387 IPPLAGFFGK 396
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 4-294 3.67e-05

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 45.53  E-value: 3.67e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843   4 ITAMSLLlgtiitISSNHWMMAWAGLEINTLAILPLISKSHH-PRAIEASTKYFLTQAVASTLLLFSSMTNAWFTGQWDI 82
Cdd:COG1009   121 MAAMLGL------VLSDNLLLLFVFWELVGLCSYLLIGFWYEkPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNF 194

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843  83 TQLTH------------PTSCMLLTAAISmKLGLVPFHFWFPEVLQG----SSLMTSmllAT--------IMKFPPITLL 138
Cdd:COG1009   195 SELLAaaptilssplltLILLLLLLGAFG-KSAQFPLHFWLPDAMEGptpvSALLHA---ATmvkagvylLARLSPLFAL 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 139 SLSSSSLnpallsgMAI--ASTAL-GGWMGLNQTQVRKILAFSSISHLGWMIIIL---IYNPMLTLLtfylysmMTTAIF 212
Cdd:COG1009   271 SPVWLTV-------VAIigAITALfAALIALAQTDIKRVLAYSTVSQLGYMFLALgvgAYVAALFHL-------LTHAFF 336

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 213 LTL---------NATNTL---KLSSLmtaWTKIPPLTTVLMLTLLSLAGLPPLAGFLPKWLIIQE-LTKQELTTIATIIT 279
Cdd:COG1009   337 KALlflgagsviHATGTRdirKMGGL---RKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAaLEAGGLGPLLLAVA 413

                         330
                  ....*....|....*.
gi 1383769843 280 LL-SLLGLFFYLRLAY 294
Cdd:COG1009   414 LLgAFLTAFYSFRLFF 429
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 287-336 5.28e-05

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 40.32  E-value: 5.28e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1383769843 287 FFYLRLAYCATITLPPSPTNHMKQWQINKSVPTLTTALTT-LSIMLLPLSP 336
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLLPTLTtLSILLLPLTP 51
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
30-304 2.47e-04

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 42.71  E-value: 2.47e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843  30 EINTLAILPLISKSHHPRAIEASTKYFLTQAVASTLLLFSSMTNAWFTGQWDITQ-----LTHPTSCMLLTAAISMKLGL 104
Cdd:PRK06277  130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDihnalLVNPTSPVIYGGLLLLIFGL 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 105 V------PFHFWFPEVLQGSSLMTSMLLATIMKFPPITLL--------SLSSSSLNPALLSGMAIASTALGGWMGLNQTQ 170
Cdd:PRK06277  210 LygsglpPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMlvifklfgGLSYFPSAQGVLIALSVLAMVFGVVMALLQTD 289

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 171 VRKILAFSSISHLGWMIIILIYNPMLTLLTFYLYS----MMTTAIFL----TLNATNTLKLSSLMTAWTKIPPLTTVLML 242
Cdd:PRK06277  290 YKRLLAYHAISQGGYVAAGLALGTPLGIVAGIFHAinhvIYKSALFLgagiVSYRTKTSNLRKLGGLLPVMPVVAFMVLC 369

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1383769843 243 TLLSLAGLPPLAGFLPKWLIIQELTKQELTTIATIITLLSLLGLFFYLRLAYcaTITLPPSP 304
Cdd:PRK06277  370 AKLAISGVPPFNGFQSKLMLAQAAMQANMPELAIIMIIVSIGTFVSMMKAFY--LIYLKPKP 429
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 160-285 2.92e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 42.60  E-value: 2.92e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 160 LGGWMGLNQTQVRKILAFSSISHLGWMIIILIYNPMLTLLTFYLY----SMMTTAIFLTL----NATNTLKLSSLMTAWT 231
Cdd:PRK12647  272 TGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVAgiidHETGTRDITKLGGLRR 351

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1383769843 232 KIPPLTTVLMLTLLSLAGLPPLAGFLPKWLIIQELTkqELTTIATIITLLSLLG 285
Cdd:PRK12647  352 AMPITAAAALLAALSMAGLPPLFGFLAKELIYEALL--EAPLWSLILTVAAVLG 403
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 153-263 4.06e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 42.03  E-value: 4.06e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 153 MAIASTALGGWMGLNQTQVRKILAFSSISHLGWMIIILIYNPMLTLLTFYLY----SMMTTAIFLTLNAT----NTLKLS 224
Cdd:PRK12662  285 LAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSIsyhfGTTKLE 364

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1383769843 225 SLMTAWTKIPPLTTVLMLTLLSLAGLPPLAGFLPKWLII 263
Cdd:PRK12662  365 DCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 46-288 5.73e-04

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 41.46  E-value: 5.73e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843  46 PRAIEASTKYFLTQAVASTLLLFSSMTNAWFTGQW----DITQLTHPTSCMLLT-----AAISMKLGLVPFHFWFPEVLQ 116
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGTfdllELLNLPLPFGVQTWLflaffIAFAVKVPLFPLHTWLPDAHV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 117 GSSLMTSMLLATIMK--------------FPPITLLSLSSSSLnpallsgMAIASTALGGWMGLNQTQVRKILAFSSISH 182
Cdd:TIGR01972 232 EAPTAGSVILAGVLLkmgtygflrfnlplFPDASLYFAPVLAA-------LGVIAIIYGALIALAQTDIKRLIAYSSISH 304

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 183 LGWMII-ILIYNP------MLTLLTFYLYSMmttAIFLTLNA----TNTLKLSSLMTAWTKIPPLTTVLMLTLLSLAGLP 251
Cdd:TIGR01972 305 MGFVLLgIFSFNElgisgaVFQMISHGLITA---ALFLLVGVlyerAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLP 381

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 1383769843 252 PLAGFLPKWLIIQELTKqelttIATIITLLSLLGLFF 288
Cdd:TIGR01972 382 GTSGFVGEFLILLGSFK-----VNPVVAFLAALGIVL 413
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 51-286 2.28e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 39.63  E-value: 2.28e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843  51 ASTKYFLTQAVASTLLLFSSMTNAWFTGQ--WDITQLTH---PTSCMLLT-----AAISMKLGLVPFHFWFPEVLQGSSL 120
Cdd:PRK12561  138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGAksyPLALELLLyagflIAFGVKLPIFPLHTWLPDAHGEASA 217

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 121 MTSMLLATIM---------------------KFPPITLLslsssslnpallsgMAIASTALGGWMGLNQTQVRKILAFSS 179
Cdd:PRK12561  218 PVSMILAGVLlkmggyalirfnvqmlpdahvYFAPALAI--------------LGVVNIIYGALNAFAQDNVKRRLAYSS 283

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 180 ISHLGWMII-------ILIYNPMLTLLTfylYSMMTTAIFL----TLNATNTLKLSSLMTAWTKIPPLTTVLMLTLLSLA 248
Cdd:PRK12561  284 VSHMGFVLLgiaaftdLGISGAMLQMIS---HGLIAAALFFltgvTYERTHTLSIPNMGGLAKVMPKTFALFTASSMASL 360

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 1383769843 249 GLPPLAGFLPKWLIIQELTKQEL--TTIATIITLLSLLGL 286
Cdd:PRK12561  361 ALPGMSGFVSELTVFLGITSSDVysSTFRTITILLAAVGL 400
PRK12650 PRK12650
DUF4040 family protein;
25-300 3.41e-03

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 39.26  E-value: 3.41e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843  25 AWaglEINTLAILPLISKSHhPRAIEASTKYFLTQAVASTLLLFSSMTNAWFTGQWDITQLTHPTS-----------CML 93
Cdd:PRK12650  138 AW---ELVSLASFFLIARSG-SGGEAGSIRTLILTFFGGLTLLAAVAIAATQTGTTSLSGILHSDVwaekpglttvvAVL 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843  94 LTAAISMKLGLVPFHFWFPEVLQGSSLMTSMLLATIM---------KFPPItlLSLSSSSLNPALLSGMAIAstALGGWM 164
Cdd:PRK12650  214 IAVAAFTKSAQFPFHFWLPEAMAAITPVSAFLHAAAVvkagiylllRFSPV--FHDVAVWNWLLIIVGMITA--LMGAVF 289

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 165 GLNQTQVRKILAFSSISHLGWMI-IILIYNPM-LT--LLTFYLYSMMTTAIFLTL----NATNTLKLSSLMTAWTKIPPL 236
Cdd:PRK12650  290 AVQKTDLKKLTAYSTVSQLGWIVaTIGVGTPFaLTaaVVHTLAHALFKSSLFMLIgvvdHQAGTRDIRRLGSLWRRMPFT 369

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1383769843 237 TTVLMLTLLSLAGLPPLAGFLPKWLIIQELTKQELTTiATIITLLSLLGLFFYLRLAYCATITL 300
Cdd:PRK12650  370 FVSVTIAALSMAAVPPLFGFVSKEGMLTAFLEAPGGN-AGVVLLLVGAALGAVFTFAYSARLVL 432
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 29-267 3.64e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 39.16  E-value: 3.64e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843  29 LEINTLAILPLISKSHHPRAIEASTKYFLTQAVASTLLLFSSMTNAWFTGQWDITQLTH--PTSCMLLTAAISMKLGLVP 106
Cdd:PRK07234  123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFV 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 107 FHFWFPEVLQGSSLMTSMLLATIMK----FPPITLLSLSSSSLNPALLSGmaIASTALGGWMGLNQTQVRKILAFSSISH 182
Cdd:PRK07234  203 SGLWLPLTHSEAEPPVSALLSGVVVkagvFPLVRCALDVPGLDLIVRIFG--VGTALLGVLFALLEKDLKRMLAFSTISQ 280

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 183 LGWMIIILIYNPMLTLLtfylYSMMTTAIFL---TLNATNTLKLSSLMTA-WTKIPplttvLMLTLLSLAGLPPLAGFLP 258
Cdd:PRK07234  281 LGFILAAPLVGGLYALA----HGLVKSTLFLcagALPSRNFTELISQMLGiGKWIP-----LTMASFSIAGFPLLAGFVS 351


                  ....*....
gi 1383769843 259 KWLIIQELT 267
Cdd:PRK07234  352 KVLTLKNLL 360
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 9-186 3.85e-03

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 38.76  E-value: 3.85e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843   9 LLLGTIITISSNHWMMAWAGLEINTLAILPLISKSHHPRAIEASTKYFL------TQAVASTLLLFSSMTnawftgqwdi 82
Cdd:PRK06458  117 FLFTMLLALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIicsvgvAFALFGTILVYANAA---------- 186

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843  83 TQLTHPTSCMLLTAAISM----------------------KLGLVPFHFWFPE-----------VLQGsSLMTSMLLATI 129
Cdd:PRK06458  187 TVMGDGEMAILWTELLKHaslldptlmklafvflligfgtKVGLFPMHAWLPDahseapspvsaLLSG-VLLNVALYAVL 265

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1383769843 130 MKFppITLLSLSSSSLNPALLSGMAIASTALGGWMGLNQTQVRKILAFSSISHLGWM 186
Cdd:PRK06458  266 RYY--ILIDAAIGSDFPGRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLI 320
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 9-188 5.71e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 38.58  E-value: 5.71e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843   9 LLLGTIITISSNHWMMAWAGLEINTLAILPLISKSHHPRAIEASTKYFLTQAVA------STLLLFSSMTNAWFTGQWDI 82
Cdd:PRK08676  111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843  83 TQLTHPTS----CMLLTAAISM------KLGLVPFHFWFPEV-LQGSSLMTSMLLATIMKFPPITLLSLSSSS------- 144
Cdd:PRK08676  191 TELAAHASllspSVLGASFLFIfigflaKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILRLSALLrqsgaae 270

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1383769843 145 LNPALLSGMAIASTALGGWMGLNQTQVRKILAFSSISHLGWMII 188
Cdd:PRK08676  271 QFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLL 314
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
49-289 5.97e-03

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 38.39  E-value: 5.97e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843  49 IEASTKYFLTQAVASTLLL---------FSSMTNAWFTGQWDITQLTHP--TSCMLLTAAISMKLGLVPFhFWFPEVLQG 117
Cdd:PRK12663  157 LRGAIKYVVLNLIGSWLFLlgigllygtFGTLNMAHIAMRLNDMGDTATltTIALLFLLAFGMKAALFPF-MWLPAAYHT 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 118 SSLMTSMLLATIMK-------FPPITLLSLSSSSLNPALLSGMAIASTALGGWMGLNQTQVRKILAFSSISHLGWMII-I 189
Cdd:PRK12663  236 PNTEVAALFAALLTkvgiyalIRVFTLLFPQERELLHPLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLgL 315

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383769843 190 LIYNPM-LTLLTFYLYSMMT--TAIFLTLNATNTL----KLSSLMTAWTKIPPLTTVLMLTLLSLAGLPPLAGFLPKWLI 262
Cdd:PRK12663  316 ALGTPAgINGAIFYLVHDMVvkTALFLIAGSLVRLtgyrSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLL 395

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1383769843 263 IQ-ELTKQE-----LTTIATIITLLSLLGLFFY 289
Cdd:PRK12663  396 VQgALDNGAyillaLMLITSLITMYSLFRIFFL 428
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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