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Conserved domains on  [gi|1383510415|ref|WP_108630045|]
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DUF4888 domain-containing protein [Staphylococcus aureus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DUF4888 pfam16229
Domain of unknown function (DUF4888); This family consists of uncharacterized proteins around ...
47-187 8.83e-98

Domain of unknown function (DUF4888); This family consists of uncharacterized proteins around 190 residues in length and is mainly found in various Staphylococcus species. The function of this family is unknown.


:

Pssm-ID: 292846  Cd Length: 141  Bit Score: 279.32  E-value: 8.83e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383510415  47 TDGQLWKKVKDSLHDSDIILSNEYETINVTYLLSNGYSSSVSAPGNDDGGHLTQSIDFKGLKQIDLTKENVYDDFNKKLD 126
Cdd:pfam16229   1 TDGQLWKKVKDSLHDSDIILSNEYETINVTYLLSNGYSSSVSAPGNDDGGHLTQSIDFKGLKQIDLTKENVYDDFNKKLD 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1383510415 127 AKNTWNSLTEKLKGLGLLQNGQKVSIYSSDSSSPVSGKVGEGVTSGGENTLTKRFINKITI 187
Cdd:pfam16229  81 AKNTWNSLTEKLKGLGLLQNGQKVSIYSSDSSSPVSGKVGEGVTSGGENTLTKRFINKITI 141
 
Name Accession Description Interval E-value
DUF4888 pfam16229
Domain of unknown function (DUF4888); This family consists of uncharacterized proteins around ...
47-187 8.83e-98

Domain of unknown function (DUF4888); This family consists of uncharacterized proteins around 190 residues in length and is mainly found in various Staphylococcus species. The function of this family is unknown.


Pssm-ID: 292846  Cd Length: 141  Bit Score: 279.32  E-value: 8.83e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383510415  47 TDGQLWKKVKDSLHDSDIILSNEYETINVTYLLSNGYSSSVSAPGNDDGGHLTQSIDFKGLKQIDLTKENVYDDFNKKLD 126
Cdd:pfam16229   1 TDGQLWKKVKDSLHDSDIILSNEYETINVTYLLSNGYSSSVSAPGNDDGGHLTQSIDFKGLKQIDLTKENVYDDFNKKLD 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1383510415 127 AKNTWNSLTEKLKGLGLLQNGQKVSIYSSDSSSPVSGKVGEGVTSGGENTLTKRFINKITI 187
Cdd:pfam16229  81 AKNTWNSLTEKLKGLGLLQNGQKVSIYSSDSSSPVSGKVGEGVTSGGENTLTKRFINKITI 141
SA1633_like cd15783
Uncharacterized protein family conserved in Staphylococci; Some proteins in this family have ...
48-188 6.91e-46

Uncharacterized protein family conserved in Staphylococci; Some proteins in this family have been described as putative beta-lactamases. They are structurally similar to the C-terminal beta-grasp domains of Staphylococcal and Streptococcal superantigens.


Pssm-ID: 294014  Cd Length: 143  Bit Score: 147.92  E-value: 6.91e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383510415  48 DGQLWKKVKDSLHDSDIILSNEYETINVTYLLSNGYSSSVSAPGNDDGGHLTQSIDFKGLKQIDLTKENV-YDDFNKKLD 126
Cdd:cd15783     1 DGQLWKKVKDSLIDANIISGNENENVKVSYKLKNGQSNSVESTANLDGDTSSTPINFSKLTQIDIKKVNIpGDDFNTRLD 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1383510415 127 AKNTWNSLTEKLKGLGLLQNGQKVS-IYSSDSSSPVSGKVGEGVTSGGENTLTKRFINKITID 188
Cdd:cd15783    81 ANNTWKKLTKKLKEKGLVKNGQKVTiHSKDPTDPSITGKVGEDLNDHKGRTLNKRDINKITIE 143
 
Name Accession Description Interval E-value
DUF4888 pfam16229
Domain of unknown function (DUF4888); This family consists of uncharacterized proteins around ...
47-187 8.83e-98

Domain of unknown function (DUF4888); This family consists of uncharacterized proteins around 190 residues in length and is mainly found in various Staphylococcus species. The function of this family is unknown.


Pssm-ID: 292846  Cd Length: 141  Bit Score: 279.32  E-value: 8.83e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383510415  47 TDGQLWKKVKDSLHDSDIILSNEYETINVTYLLSNGYSSSVSAPGNDDGGHLTQSIDFKGLKQIDLTKENVYDDFNKKLD 126
Cdd:pfam16229   1 TDGQLWKKVKDSLHDSDIILSNEYETINVTYLLSNGYSSSVSAPGNDDGGHLTQSIDFKGLKQIDLTKENVYDDFNKKLD 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1383510415 127 AKNTWNSLTEKLKGLGLLQNGQKVSIYSSDSSSPVSGKVGEGVTSGGENTLTKRFINKITI 187
Cdd:pfam16229  81 AKNTWNSLTEKLKGLGLLQNGQKVSIYSSDSSSPVSGKVGEGVTSGGENTLTKRFINKITI 141
SA1633_like cd15783
Uncharacterized protein family conserved in Staphylococci; Some proteins in this family have ...
48-188 6.91e-46

Uncharacterized protein family conserved in Staphylococci; Some proteins in this family have been described as putative beta-lactamases. They are structurally similar to the C-terminal beta-grasp domains of Staphylococcal and Streptococcal superantigens.


Pssm-ID: 294014  Cd Length: 143  Bit Score: 147.92  E-value: 6.91e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383510415  48 DGQLWKKVKDSLHDSDIILSNEYETINVTYLLSNGYSSSVSAPGNDDGGHLTQSIDFKGLKQIDLTKENV-YDDFNKKLD 126
Cdd:cd15783     1 DGQLWKKVKDSLIDANIISGNENENVKVSYKLKNGQSNSVESTANLDGDTSSTPINFSKLTQIDIKKVNIpGDDFNTRLD 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1383510415 127 AKNTWNSLTEKLKGLGLLQNGQKVS-IYSSDSSSPVSGKVGEGVTSGGENTLTKRFINKITID 188
Cdd:cd15783    81 ANNTWKKLTKKLKEKGLVKNGQKVTiHSKDPTDPSITGKVGEDLNDHKGRTLNKRDINKITIE 143
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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