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Conserved domains on  [gi|1379599497|ref|XP_024633176|]
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chlorophyll a-b binding protein 7, chloroplastic isoform X2 [Medicago truncatula]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN00171 super family cl29582
photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
 32-296 2.08e-178

photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional


The actual alignment was detected with superfamily member PLN00171:

Pssm-ID: 215088  Cd Length: 324  Bit Score: 495.09  E-value: 2.08e-178
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379599497  32 FAPKPRKHHL------ICNASWQELAGVLLFSAIPFTAVKVIANSPLGESLQRKMEETKQLAVKNSSKFKAQAAKARKQS 105
Cdd:PLN00171   22 LASKPRRRRAtrrpasSCRASWQELAGVLVFSAIPFTAVKAIANSSLGESLQRRLEETKKAAVEESSAFKAAAQKARNES 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379599497 106 FWYGQGRPRWLGPISYDgYPSYLHGELPGDYGFDIAGLAKDPVELQKYFNFEILHARWAMLASVGALIPELLDLLGVFHF 185
Cdd:PLN00171  102 FWYGEERPRWLGPIPYD-YPDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGAVHF 180

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379599497 186 VEPVWWRVGYSKLQ-------------------------------VGPEYARYCGIEALEPLGIYLPGDINYPGGALFDP 234
Cdd:PLN00171  181 AEPVWWRVGYAKLQgdtldylgipglhiagsqgviviaicqallmVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDP 260

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1379599497 235 LNLSKDPEAFEELKVKEIKNGRLAMMAWLGFFTQAALTGKGPVQNIVDHIYDPFHNNLLGSL 296
Cdd:PLN00171  261 LGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLSDPLHNNLLSSL 322
 
Name Accession Description Interval E-value
PLN00171 PLN00171
photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
 32-296 2.08e-178

photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional


Pssm-ID: 215088  Cd Length: 324  Bit Score: 495.09  E-value: 2.08e-178
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379599497  32 FAPKPRKHHL------ICNASWQELAGVLLFSAIPFTAVKVIANSPLGESLQRKMEETKQLAVKNSSKFKAQAAKARKQS 105
Cdd:PLN00171   22 LASKPRRRRAtrrpasSCRASWQELAGVLVFSAIPFTAVKAIANSSLGESLQRRLEETKKAAVEESSAFKAAAQKARNES 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379599497 106 FWYGQGRPRWLGPISYDgYPSYLHGELPGDYGFDIAGLAKDPVELQKYFNFEILHARWAMLASVGALIPELLDLLGVFHF 185
Cdd:PLN00171  102 FWYGEERPRWLGPIPYD-YPDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGAVHF 180

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379599497 186 VEPVWWRVGYSKLQ-------------------------------VGPEYARYCGIEALEPLGIYLPGDINYPGGALFDP 234
Cdd:PLN00171  181 AEPVWWRVGYAKLQgdtldylgipglhiagsqgviviaicqallmVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDP 260

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1379599497 235 LNLSKDPEAFEELKVKEIKNGRLAMMAWLGFFTQAALTGKGPVQNIVDHIYDPFHNNLLGSL 296
Cdd:PLN00171  261 LGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLSDPLHNNLLSSL 322
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
124-270 6.18e-50

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 162.86  E-value: 6.18e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379599497 124 YPSYLHGELPGDYGFDIAGLAKDPVELQKYFNFEILHARWAMLASVGALIPELLDLLGVFHfvEPVWWRVGYSKLQVGP- 202
Cdd:pfam00504   1 PPAYLDGSLPGDYGFDPLGLSADPETFKRYREAELKHGRWAMLAVLGALVPEALGKLGGGN--EPVWFEAGAVALHAQSv 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379599497 203 ---------------EYARYCGIEALEPLGiylPGDINYPGGALFDPLNLS-KDPEAFEELKVKEIKNGRLAMMAWLGFF 266
Cdd:pfam00504  79 ptllalqilllmgflELARWQGGKAPGLGG---GGDRGYPGGFGFDPLGLAkKDPETLAELKLKELKNGRLAMIAFLGFF 155


                  ....
gi 1379599497 267 TQAA 270
Cdd:pfam00504 156 VQEL 159
 
Name Accession Description Interval E-value
PLN00171 PLN00171
photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
 32-296 2.08e-178

photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional


Pssm-ID: 215088  Cd Length: 324  Bit Score: 495.09  E-value: 2.08e-178
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379599497  32 FAPKPRKHHL------ICNASWQELAGVLLFSAIPFTAVKVIANSPLGESLQRKMEETKQLAVKNSSKFKAQAAKARKQS 105
Cdd:PLN00171   22 LASKPRRRRAtrrpasSCRASWQELAGVLVFSAIPFTAVKAIANSSLGESLQRRLEETKKAAVEESSAFKAAAQKARNES 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379599497 106 FWYGQGRPRWLGPISYDgYPSYLHGELPGDYGFDIAGLAKDPVELQKYFNFEILHARWAMLASVGALIPELLDLLGVFHF 185
Cdd:PLN00171  102 FWYGEERPRWLGPIPYD-YPDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGAVHF 180

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379599497 186 VEPVWWRVGYSKLQ-------------------------------VGPEYARYCGIEALEPLGIYLPGDINYPGGALFDP 234
Cdd:PLN00171  181 AEPVWWRVGYAKLQgdtldylgipglhiagsqgviviaicqallmVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDP 260

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1379599497 235 LNLSKDPEAFEELKVKEIKNGRLAMMAWLGFFTQAALTGKGPVQNIVDHIYDPFHNNLLGSL 296
Cdd:PLN00171  261 LGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLSDPLHNNLLSSL 322
PLN00025 PLN00025
photosystem II light harvesting chlorophyll a/b binding protein; Provisional
 95-291 1.41e-67

photosystem II light harvesting chlorophyll a/b binding protein; Provisional


Pssm-ID: 215033 [Multi-domain]  Cd Length: 262  Bit Score: 211.53  E-value: 1.41e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379599497  95 KAQAAKARKQSFWYGQGRPRWLGPISYDGyPSYLHGELPGDYGFDIAGLAKDPVELQKYFNFEILHARWAMLASVGALIP 174
Cdd:PLN00025   34 KTVAKAAGSGSIWYGPDRPKYLGPFSGET-PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTP 112

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379599497 175 ELLDLLGVfHFVEPVWWRVGYSKLQVG-------PEYARYCGIEALEPLGIYLPG----------------DINYPGGAl 231
Cdd:PLN00025  113 ELLAKNGV-KFGEAVWFKAGAQIFSEGgldylgnPSLVHAQSILAIWACQVVLMGavegyrvnggplgeglDPLYPGGS- 190

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379599497 232 FDPLNLSKDPEAFEELKVKEIKNGRLAMMAWLGFFTQAALTGKGPVQNIVDHIYDPFHNN 291
Cdd:PLN00025  191 FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVANN 250
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
124-270 6.18e-50

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 162.86  E-value: 6.18e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379599497 124 YPSYLHGELPGDYGFDIAGLAKDPVELQKYFNFEILHARWAMLASVGALIPELLDLLGVFHfvEPVWWRVGYSKLQVGP- 202
Cdd:pfam00504   1 PPAYLDGSLPGDYGFDPLGLSADPETFKRYREAELKHGRWAMLAVLGALVPEALGKLGGGN--EPVWFEAGAVALHAQSv 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379599497 203 ---------------EYARYCGIEALEPLGiylPGDINYPGGALFDPLNLS-KDPEAFEELKVKEIKNGRLAMMAWLGFF 266
Cdd:pfam00504  79 ptllalqilllmgflELARWQGGKAPGLGG---GGDRGYPGGFGFDPLGLAkKDPETLAELKLKELKNGRLAMIAFLGFF 155


                  ....
gi 1379599497 267 TQAA 270
Cdd:pfam00504 156 VQEL 159
PLN00147 PLN00147
light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
 91-298 3.83e-49

light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional


Pssm-ID: 215076 [Multi-domain]  Cd Length: 252  Bit Score: 163.89  E-value: 3.83e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379599497  91 SSKFKAQAAKARKQS-----FWYGQGRPRWLGPISYdgyPSYLHGELPGDYGFDIAGLAKDPVELQKYFNFEILHARWAM 165
Cdd:PLN00147   19 SSSHCTRSISSVAASsgginPVVAQERPTWLPGLDP---PPHLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAM 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379599497 166 LASVGALIPELLDLLGVFHFvePVWWRVGYSKLQVG---------------PEYARYC---------------GIE-ALE 214
Cdd:PLN00147   96 AGVAGILFTDLLRVTGIRNL--PVWYEAGAVKFEFAstrtlfvvqlllmgfAETKRYMdfvspgsqakegsffGLEaALE 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379599497 215 PLGiylPGdinYPGGALFDPLNLSKDPEAFEELKVKEIKNGRLAMMAWLGFFTQAALTGKGPVQNIVDHIYDPFHNNLLG 294
Cdd:PLN00147  174 GLE---PG---YPGGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLTHLSDPWHKTIIQ 247


                  ....
gi 1379599497 295 SLNS 298
Cdd:PLN00147  248 TLSH 251
PLN00048 PLN00048
photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
 83-296 2.05e-45

photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional


Pssm-ID: 177680 [Multi-domain]  Cd Length: 262  Bit Score: 154.62  E-value: 2.05e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379599497  83 TKQLAVKNSSKFKAQAAKARKQSFWY----------GQGRPRWLgpiSYDGYPSYLHGELPGDYGFDIAGLAkDP----- 147
Cdd:PLN00048    3 GVQTARRALSSSAARSSSAKKARFVVraeatppakqGADRQLWF---ASKQSLSYLDGTLPGDFGFDPLGLS-DPegagg 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379599497 148 -VELQKYFNFEILHARWAMLASVGALIPELLDLLGVFHFVEPVWW---------------------------RVGYSKLQ 199
Cdd:PLN00048   79 fIEPQWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALPWfqsgvippagtydywadpytlfvlemaLMGFAEHR 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379599497 200 VGPEYARYCGIEALEPLGI--YL--PGDINYPGGALFDPLNLSKDPEAFEELKVKEIKNGRLAMMAWLGFFTQAALTGKG 275
Cdd:PLN00048  159 RAQDYYKPGSMGKQYFLGLekGLggSGNPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVG 238

                         250       260
                  ....*....|....*....|.
gi 1379599497 276 PVQNIVDHIYDPFHNNLLGSL 296
Cdd:PLN00048  239 PFQNLLDHLADPVNNNVLTNL 259
PLN00099 PLN00099
light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
 111-292 7.61e-43

light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional


Pssm-ID: 177717  Cd Length: 243  Bit Score: 147.48  E-value: 7.61e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379599497 111 GRPRwlgpisydgyPSYLHGELPGDYGFDIAGLAKDPVELQKYFNFEILHARWAMLASVGALIPELLdllGVFHFVEPVW 190
Cdd:PLN00099   50 GQPR----------PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---GLGNWVKAQE 116

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379599497 191 WRV---GYSKLQVGP-EYARYCGIEALEPLGIYL----------PGDINYPGGAlFDPLNLSKDPEAFEELKVKEIKNGR 256
Cdd:PLN00099  117 WAAipgGQATYLGNPvPWGTLPTILAIEFLAIAFvehqrsmekdPEKKKYPGGA-FDPLGYSKDPKKFEEYKVKEIKNGR 195

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1379599497 257 LAMMAWLGF-FTQAALTGKGPVQNIVDHIYDPFHNNL 292
Cdd:PLN00099  196 LALLAFVGFcVQQSAYPGTGPLENLATHLADPWHNNI 232
PLN00097 PLN00097
photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
 112-294 6.44e-41

photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional


Pssm-ID: 165670 [Multi-domain]  Cd Length: 244  Bit Score: 142.45  E-value: 6.44e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379599497 112 RPRWLgPISydGYPSYLHGELPGDYGFDIAGLAKDPVELQKYFNFEILHARWAMLASVGALIPELLDLLGVFHFvePVWW 191
Cdd:PLN00097   44 RPTWL-PGK--AAAAHLDGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGMADL--PNWI 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379599497 192 RVGYSK---LQVGP------------EYARYCGIEA-----LEPLGIYLPGDIN----YPGGaLFDPLNLSKDPEAFEEL 247
Cdd:PLN00097  119 DAAKWDgywAGAGPlffiqmamfnwaEIRRWQDMKApgsmnEDPLFGANKGDTNtdvgYPKG-LFDKFGWAKDEKKAAEL 197

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1379599497 248 KVKEIKNGRLAMMAWLGFFTQAALTGKGPVQNIVDHIYDPFHNNLLG 294
Cdd:PLN00097  198 KLKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFSHLADPGHNGIFG 244
PLN00101 PLN00101
Photosystem I light-harvesting complex type 4 protein; Provisional
 76-296 3.39e-38

Photosystem I light-harvesting complex type 4 protein; Provisional


Pssm-ID: 215055 [Multi-domain]  Cd Length: 250  Bit Score: 135.43  E-value: 3.39e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379599497  76 LQRKMEeTKQLAVKNSSKFKAQAAKARkqsfwygqgrprWLGPISYdgyPSYLHGELPGDYGFDIAGLAKDPVELQKYFN 155
Cdd:PLN00101   30 LNRELS-FKPMPSSATRSFKVEAKKGE------------WLPGLAS---PGYLNGSLPGDNGFDPLGLAEDPENLKWFVQ 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379599497 156 FEILHARWAMLASVGALIPELLDLLGVFHfvEPVWWRVG-------YSKLQVgPEYARYCGIEALEPLGIYLPGDIN--- 225
Cdd:PLN00101   94 AELVNGRWAMLGVAGMLLPEVFTKIGIIN--APQWYDAGkaeyfasSSTLFV-IEFILFHYVEIRRWQDIKNPGSVNqdp 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379599497 226 -------------YPGGaLFDPLNLskdpEAFEELKVKEIKNGRLAMMAWLGFFTQAALTGKGPVQNIVDHIYDPFHNNL 292
Cdd:PLN00101  171 ifkqyslppnevgYPGG-IFNPLNF----APTEEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTI 245


                  ....
gi 1379599497 293 LGSL 296
Cdd:PLN00101  246 VQTL 249
PLN00098 PLN00098
light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
 77-298 1.78e-37

light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional


Pssm-ID: 177716  Cd Length: 267  Bit Score: 133.88  E-value: 1.78e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379599497  77 QRKMEETKQLAVKNSSKFKAQAAKARKQSFW--YGQGRPRWLGPISYdgyPSYLHGELPGDYGFDIAGLAKDPVELQKYF 154
Cdd:PLN00098   25 LRRPIVASQSGTGGRMKVRLNATKGGVSSVCepLPPDRPLWFPGSSP---PEWLDGSLPGDFGFDPLGLGSDPELLKWFA 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379599497 155 NFEILHARWAMLASVGALIPELLDLLGVF------------HFVEPVWWRVGYSKLQVGPEYARYC-----GIEALEPlg 217
Cdd:PLN00098  102 QAELMHSRWAMLAVAGILIPECLERLGFIenfswydagareYFADPTTLFVVQMVLMGWAEGRRWAdlikpGCVDIEP-- 179

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379599497 218 iYLPG------DINYPGGALFDPLNLSK-DPEAFEELKVKEIKNGRLAMMAWLGFFTQAALTGKGPVQNIVDHIYDPFHN 290
Cdd:PLN00098  180 -KLPNktnpkpDVGYPGGLWFDPMMWGRgSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHLADPGHC 258


                  ....*...
gi 1379599497 291 NLLGSLNS 298
Cdd:PLN00098  259 NVFSAFTS 266
PLN00187 PLN00187
photosystem II light-harvesting complex II protein Lhcb4; Provisional
 93-298 1.89e-37

photosystem II light-harvesting complex II protein Lhcb4; Provisional


Pssm-ID: 177781  Cd Length: 286  Bit Score: 134.53  E-value: 1.89e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379599497  93 KFKAQAAKARKQSFWYGQGRPRWL-GPISydgyPSYLHGELPGDYGFDIAGLAKdPVE---------------------- 149
Cdd:PLN00187   33 KKKKAAKKAKKKSSKVGADRPLWFpGAKA----PEWLDGSLVGDYGFDPFGLGK-PAEylqfdldsldqnlaknlagdvi 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379599497 150 ----------------------LQKYFNFEILHARWAMLASVGALIPELLDllGVfhfvepVWWRVGYSKLQVGPEYary 207
Cdd:PLN00187  108 gtrteaseikstpfqpysevfgLQRFRECELIHGRWAMLATLGALSVEALT--GV------TWQDAGKVELVDGSSY--- 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379599497 208 cgiealepLGIYLPGDIN---------------------------YPGGALFDPLNLSKDPEAFEELKVKEIKNGRLAMM 260
Cdd:PLN00187  177 --------LGQPLPFSITtliwievlvigyiefqrnaeldpekrlYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMV 248

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1379599497 261 AWLGFFTQAALTGKGPVQNIVDHIYDPFHNNLLGSLNS 298
Cdd:PLN00187  249 AFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 286
PLN00100 PLN00100
light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
 87-295 3.39e-35

light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional


Pssm-ID: 215054  Cd Length: 246  Bit Score: 127.30  E-value: 3.39e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379599497  87 AVKNSSKFKAQAAKARKQSFWYGQGRPrwlgpisydgyPSYLHGELPGDYGFDIAGLAKDPVELQKYFNFEILHARWAML 166
Cdd:PLN00100   18 AGVSTTRRPRVRVAARARPMWYPGATA-----------PKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMA 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379599497 167 ASVGALIPELLDLlgvfhfvePVWWRVGYSKLQ------VGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLNLSKd 240
Cdd:PLN00100   87 ATAGILFTDAVGL--------PKFWEAGAEKYGldlqtlVLIQVVVMAVLEAARYRGFMKTGESGVLSFFPFDPTGMDS- 157

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1379599497 241 peafEELKVKEIKNGRLAMMAWLGFFTQAALTGKGPVQNIVDHIYDPFHNNLLGS 295
Cdd:PLN00100  158 ----PEMKVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKAHMANPGHVNIFTS 208
PLN00170 PLN00170
photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
 98-277 7.18e-20

photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional


Pssm-ID: 215087 [Multi-domain]  Cd Length: 255  Bit Score: 86.91  E-value: 7.18e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379599497  98 AAKARKQSFWYGQGRPRWLGPISYDGY---PSYLHGELPGDYGFDIAGLAKDPVELQKYFNFEILHARWAMLA------- 167
Cdd:PLN00170   37 GARTLLVVAAAAQPKKSWIPAVKGGGNlvdPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAvvgifvg 116

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379599497 168 ---------------------SVGALIPELLDLLGVFH------FVEP----VWWRVGYSKlqVGPEYARYCGIEAlepl 216
Cdd:PLN00170  117 qawsgipwfeagadpgaiapfSFGSLLGTQLLLMGWVEskrwvdFFNPdsqsVEWATPWSR--TAENFANATGLQG---- 190

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379599497 217 giylpgdinYPGGALFDPLNLS---------KDPEAFEELKVKEIKNGRLAMMAWLGFFTQAAlTGKGPV 277
Cdd:PLN00170  191 ---------YPGGKFFDPLGLAgtvkdgvyiPDFEKLERLKLAEIKHARLAMVAMLIFYFEAG-QGKTPL 250
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
219-281 4.18e-12

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 63.09  E-value: 4.18e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1379599497 219 YLPGDinYPGGALFDPLNLSKDPEAFEELKVKEIKNGRLAMMAWLGFFTQAALTGKGPVQNIV 281
Cdd:pfam00504   4 YLDGS--LPGDYGFDPLGLSADPETFKRYREAELKHGRWAMLAVLGALVPEALGKLGGGNEPV 64
PLN00089 PLN00089
fucoxanthin-chlorophyll a/c binding protein; Provisional
 134-275 1.51e-11

fucoxanthin-chlorophyll a/c binding protein; Provisional


Pssm-ID: 177710 [Multi-domain]  Cd Length: 209  Bit Score: 62.78  E-value: 1.51e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379599497 134 GDYGFDIAGLAKDPVELQKYF-NFEILHARWAMLASVGALIPELLDLLG-VFHFVE-PVWWRVGYSKLQVGPEYARYCGI 210
Cdd:PLN00089   55 GSKKFDPLGLAEKVEEFLPWFrESELKHGRAAMLAVAGFIAPDFVRIPGeAYSFAAiPKTIDAHDALLKSGAMIQIFAWI 134

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1379599497 211 EALEpLGIYLPGDINY------PGGALFDPLNLS-KDPEAFEELKVKEIKNGRLAMMAWLGFFTQAALTGKG 275
Cdd:PLN00089  135 GFVD-LAVSAPAAAAAaefdrtPGDFGFDLLALYpKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHG 205
PLN00120 PLN00120
fucoxanthin-chlorophyll a-c binding protein; Provisional
 232-270 2.88e-05

fucoxanthin-chlorophyll a-c binding protein; Provisional


Pssm-ID: 215063  Cd Length: 202  Bit Score: 43.96  E-value: 2.88e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1379599497 232 FDPLNLSK--DPEAFEELKVKEIKNGRLAMMAWLGFFTQAA 270
Cdd:PLN00120   47 FDPLGLVDdgDQEKFDRLRYVEIKHGRISMLAVVGYLVTEA 87
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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