NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1378914013|gb|AWA46487|]
View 

NADH dehydrogenase subunit 4, partial (mitochondrion) [Carlia wundalthini]

Protein Classification

proton-conducting transporter membrane subunit( domain architecture ID 1562513)

proton-conducting transporter membrane subunit such as NADH dehydrogenase subunit 2, 4, or N, which shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain

EC:  7.1.-.-
Gene Ontology:  GO:0005886

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Proton_antipo_M super family cl39059
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-216 1.67e-115

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


The actual alignment was detected with superfamily member MTH00124:

Pssm-ID: 476862 [Multi-domain]  Cd Length: 457  Bit Score: 337.17  E-value: 1.67e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013   1 GIIRITPMLNPTSTELYYPFIMLAMWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLAGAVALMIAHGL 80
Cdd:MTH00124  242 GIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSLSGAMILMIAHGL 321

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013  81 TSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSTFNWSSLTIVMTGTGTL 160
Cdd:MTH00124  322 TSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWSPTTIILTGLATL 401

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1378914013 161 LTATYSLHMFLTTQRNKLPTNTANTSPTQTREHLLMMLHIIPVILLLTKPGLIMGP 216
Cdd:MTH00124  402 ITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILKPELISGT 457
 
Name Accession Description Interval E-value
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
 1-216 1.67e-115

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 337.17  E-value: 1.67e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013   1 GIIRITPMLNPTSTELYYPFIMLAMWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLAGAVALMIAHGL 80
Cdd:MTH00124  242 GIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSLSGAMILMIAHGL 321

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013  81 TSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSTFNWSSLTIVMTGTGTL 160
Cdd:MTH00124  322 TSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWSPTTIILTGLATL 401

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1378914013 161 LTATYSLHMFLTTQRNKLPTNTANTSPTQTREHLLMMLHIIPVILLLTKPGLIMGP 216
Cdd:MTH00124  402 ITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILKPELISGT 457
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-154 9.79e-35

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 124.73  E-value: 9.79e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013   1 GIIRITPMLNPTSTELYYPFIMLAMWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLAGAVALMIAHGL 80
Cdd:pfam00361 131 GLIRRSLLYLPSSPFIQQILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGL 210

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1378914013  81 TSSLLFCLA-NTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSTFNWSSLTIVM 154
Cdd:pfam00361 211 FSAGLFLCAgSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVL 285
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 1-206 1.07e-32

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 122.88  E-value: 1.07e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013   1 GIIRITPMLNPTSTELYYPFIM-LAMWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLAGAVALMIAHG 79
Cdd:COG1008   258 GLLRFALPLFPEASAYFAPLLAaLGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLLGIFALNPLGLQGAVLQMVSHG 337

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013  80 LTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSTFNWSSLTIVMTGTGT 159
Cdd:COG1008   338 LITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVLLGAFQVNPWLAILAALGL 417

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1378914013 160 LLTATYSLHMFLTTQRNKLPTNTANTSPTQTREHLLMMLHIIPVILL 206
Cdd:COG1008   418 ILTAAYLLWMYQRVFFGPLKEELAELPDLNPRELAVLAPLAALILLL 464
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 1-170 6.25e-29

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 112.73  E-value: 6.25e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013   1 GIIRITPMLNPTSTELYYPFIM-LAMWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLAGAVALMIAHG 79
Cdd:TIGR01972 252 GFLRFNLPLFPDASLYFAPVLAaLGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGIFSFNELGISGAVFQMISHG 331

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013  80 LTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSTFNWSSLTIVMTGTGT 159
Cdd:TIGR01972 332 LITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLILLGSFKVNPVVAFLAALGI 411

                         170
                  ....*....|.
gi 1378914013 160 LLTATYSLHMF 170
Cdd:TIGR01972 412 VLAAAYMLTLY 422
 
Name Accession Description Interval E-value
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
 1-216 1.67e-115

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 337.17  E-value: 1.67e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013   1 GIIRITPMLNPTSTELYYPFIMLAMWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLAGAVALMIAHGL 80
Cdd:MTH00124  242 GIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSLSGAMILMIAHGL 321

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013  81 TSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSTFNWSSLTIVMTGTGTL 160
Cdd:MTH00124  322 TSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWSPTTIILTGLATL 401

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1378914013 161 LTATYSLHMFLTTQRNKLPTNTANTSPTQTREHLLMMLHIIPVILLLTKPGLIMGP 216
Cdd:MTH00124  402 ITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILKPELISGT 457
ND4 MTH00068
NADH dehydrogenase subunit 4; Provisional
 1-217 1.16e-107

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214417 [Multi-domain]  Cd Length: 458  Bit Score: 317.24  E-value: 1.16e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013   1 GIIRITPMLNPTSTELYYPFIMLAMWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLAGAVALMIAHGL 80
Cdd:MTH00068  242 GILRISILLTPLSKELSYPFIILALWGVLMTSLICLRQTDLKSLIAYSSVSHMGLVIAAALIQTPWSFSGAIILMISHGL 321

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013  81 TSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSTFNWSSLTIVMTGTGTL 160
Cdd:MTH00068  322 TSSALFCLANTNYERTHSRTLLLLRGAQTILPLMATWWLLSNLSNMALPPSPNLWGELTIMVSLFNWSNWTILITGLGTL 401

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1378914013 161 LTATYSLHMFLTTQRNKLPTNTANTSPTQTREHLLMMLHIIPVILLLTKPGLIMGPF 217
Cdd:MTH00068  402 ITAAYTLYMFLMTQRGPLPNHLKTLFPTYTREHLLLALHILPMLLLILKPELISGMF 458
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
 1-216 1.41e-105

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 311.83  E-value: 1.41e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013   1 GIIRITPMLNPTSTELYYPFIMLAMWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLAGAVALMIAHGL 80
Cdd:MTH00110  242 GMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGL 321

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013  81 TSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSTFNWSSLTIVMTGTGTL 160
Cdd:MTH00110  322 TSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWSNITIILMGLNML 401

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1378914013 161 LTATYSLHMFLTTQRNKLPTNTANTSPTQTREHLLMMLHIIPVILLLTKPGLIMGP 216
Cdd:MTH00110  402 ITALYSLYMLITTQRGKLTHHINNIKPSFTRENTLMALHLLPLLLLSLNPKIILGP 457
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
 1-215 2.69e-85

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 260.27  E-value: 2.69e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013   1 GIIRITPMLNPTSTELYYPFIMLAMWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLAGAVALMIAHGL 80
Cdd:MTH00127  243 GMMRMMVMLDPLTKELSYPFIILALWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFTGALILMIAHGL 322

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013  81 TSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSTFNWSSLTIVMTGTGTL 160
Cdd:MTH00127  323 TSSALFCLANTNYERTHSRTMLLARGLQMILPLMATWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTLALTGLGTL 402

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1378914013 161 LTATYSLHMFLTTQRNKLPTNTANTSPTQTREHLLMMLHIIPVILLLTKPGLIMG 215
Cdd:MTH00127  403 ITAGYSLYMFLMTQRGPLPDHIIALNPSHTREHLLMALHLLPLLLLILKPELIWG 457
ND4 MTH00206
NADH dehydrogenase subunit 4; Provisional
 1-213 2.91e-78

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214458 [Multi-domain]  Cd Length: 450  Bit Score: 241.77  E-value: 2.91e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013   1 GIIRITPMLNPTSTELYYPFIMLAMWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLAGAVALMIAHGL 80
Cdd:MTH00206  238 GMMRIILILGPSTKLSSYFFIILGLWGSIMTSSICLRQTDLKSLIAYSSVSHMSLVTAGILSGSPWGFKGALLLMIAHGL 317

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013  81 TSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSTFNWSSLTIVMTGTGTL 160
Cdd:MTH00206  318 VSSALFCLANLLYERSHTRTILGNRGLQMILPLLSFWWLLFFLANLGLPPFPNLFGELLIITSLFSWSNFTLPLLGLGFL 397

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1378914013 161 LTATYSLHMFLTTQRNKLPTNTANTSPTQTREHLLMMLHIIPVILLLTKPGLI 213
Cdd:MTH00206  398 FTAIYSLYMFVMTQHGKTPNHLLSLSPSSTREHLLLFLHLFPVILLILNPNLI 450
ND4 MTH00044
NADH dehydrogenase subunit 4; Validated
 1-214 7.80e-64

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214411 [Multi-domain]  Cd Length: 458  Bit Score: 204.82  E-value: 7.80e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013   1 GIIRITPMLN-PTSTELYYPFIMLAMWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLAGAVALMIAHG 79
Cdd:MTH00044  243 GLIRLINLFSlPSANNISFILIVFCCWGALITSIICLRQTDLKALIAYSSVGHMSLVAAGIFSGTNWGINGALILMIAHG 322

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013  80 LTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSTFNWSSLTIVMTGTGT 159
Cdd:MTH00044  323 LVSSALFCLANILYERSGTRTLSITRGFKLITPLLPLWWLIFCAANLGLPPLPNLIGELLIISSIISWSILSFPIIGLAT 402

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1378914013 160 LLTATYSLHMFLTTQRNKLPTNTANTSPTQTREHLLMMLHIIPVILLLTKPGLIM 214
Cdd:MTH00044  403 VFGAIYSLLIYQLTNSGSFPSWISNVSPISSREHLLIFLHLLPLILIIINPNIIL 457
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-214 7.37e-58

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 188.82  E-value: 7.37e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013   1 GIIRITPMLNPTSTELYYPFIMLAMWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLAGAVALMIAHGL 80
Cdd:MTH00163  230 GLLRVMSFFSKLGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGL 309

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013  81 TSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSTFNWSSLTIVMTGTGTL 160
Cdd:MTH00163  310 CSSGLFCLANIIYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSF 389

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1378914013 161 LTATYSLHMFLTTQRNKLPTNTANTSPTQTREHLLMMLHIIPVILLLTKPGLIM 214
Cdd:MTH00163  390 FSAAYSLYLYSYSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFM 443
ND4 MTH00150
NADH dehydrogenase subunit 4; Provisional
 1-215 8.66e-52

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214435 [Multi-domain]  Cd Length: 417  Bit Score: 172.33  E-value: 8.66e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013   1 GIIRITPMLNPTSTELYYPFIMLAMWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLAGAVALMIAHGL 80
Cdd:MTH00150  201 GILRMMMVFSLSSSSFSIFLISLSLWGGVLTSLICLRQSDVKSLIAYSSVGHMSLVLAGVLSNTSWGWVGALIMMVSHGF 280

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013  81 TSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSTFNWSSLTIVMTGTGTL 160
Cdd:MTH00150  281 CSSGLFCLANYTYEKVHSRSLFLSKGMLMLYPSLSLWWFLFCIINMAAPPSLNLLSEIMIFPSLISYSPWFFVPLGLMVF 360

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1378914013 161 LTATYSLHMFLTTQRNKLPTNTANTSPTQTREHLLMMLHIIPVILLLTKPGLIMG 215
Cdd:MTH00150  361 LSGLYSLYLYTSIQHGGSSSFLKPFNELKSSEMLLLLLHWVPLLLLILKSDLLFM 415
ND4 MTH00014
NADH dehydrogenase subunit 4; Validated
 1-213 1.59e-48

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214399 [Multi-domain]  Cd Length: 452  Bit Score: 164.91  E-value: 1.59e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013   1 GIIRITPMLNPTSTELYYPFIMLAMWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLAGAVALMIAHGL 80
Cdd:MTH00014  236 GLLRMSSLFMHINKSLSAPFSSISLVGAVITSLICIRQPDLKSLIAYSSVGHMGLMTAGIMSNTSWGWQGALAMMIAHGL 315

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013  81 TSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSTFNWSSLTIVMTGTGTL 160
Cdd:MTH00014  316 CSSALFALANMTYETTHTRSLFLTKGLLSLFPTMTMWWFLLSAANMAAPPSINLLSEIMLLTSILSSSLSTAILLAITSF 395

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1378914013 161 LTATYSLHMFLTTQRNKLPTNTANTSPTQTREHLLMMLHIIPVILLLTKPGLI 213
Cdd:MTH00014  396 LAAAYSLFLYTSTQHGSPPSFMNPLNLFTPRNHTLMTLHLVPLFILILKPDLI 448
ND4 MTH00205
NADH dehydrogenase subunit 4; Provisional
 1-214 1.88e-46

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214457 [Multi-domain]  Cd Length: 448  Bit Score: 159.37  E-value: 1.88e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013   1 GIIRITPMLNPTSTELYYPFIMLAMWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLAGAVALMIAHGL 80
Cdd:MTH00205  234 GLIRITSMLYKLNSNFSELFFSISLWGGVMTGMICLRQVDLKSLIAYSSVGHMGLMVVGVFSNTSWGMNGAIIMMVAHGL 313

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013  81 TSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSTFNWSSLTIVMTGTGTL 160
Cdd:MTH00205  314 CSSGMFALANVNYERTNSRSMLMNKGVLNTFPFLVLMWFLLISCNMAAPPSLNLASEILLIMSLLSSSKISGIPLSLISF 393

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1378914013 161 LTATYSLHMFLTTQRNKLPTNTANTSPTQTREHLLMMLHIIPVILLLTKPGLIM 214
Cdd:MTH00205  394 LSGAYSLYLYSQSQHGKVSSQISSFLAISEREYYILILHWFPLNILILKLKIFI 447
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-154 9.79e-35

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 124.73  E-value: 9.79e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013   1 GIIRITPMLNPTSTELYYPFIMLAMWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLAGAVALMIAHGL 80
Cdd:pfam00361 131 GLIRRSLLYLPSSPFIQQILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGL 210

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1378914013  81 TSSLLFCLA-NTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSTFNWSSLTIVM 154
Cdd:pfam00361 211 FSAGLFLCAgSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVL 285
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 1-206 1.07e-32

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 122.88  E-value: 1.07e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013   1 GIIRITPMLNPTSTELYYPFIM-LAMWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLAGAVALMIAHG 79
Cdd:COG1008   258 GLLRFALPLFPEASAYFAPLLAaLGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLLGIFALNPLGLQGAVLQMVSHG 337

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013  80 LTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSTFNWSSLTIVMTGTGT 159
Cdd:COG1008   338 LITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVLLGAFQVNPWLAILAALGL 417

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1378914013 160 LLTATYSLHMFLTTQRNKLPTNTANTSPTQTREHLLMMLHIIPVILL 206
Cdd:COG1008   418 ILTAAYLLWMYQRVFFGPLKEELAELPDLNPRELAVLAPLAALILLL 464
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 1-170 6.25e-29

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 112.73  E-value: 6.25e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013   1 GIIRITPMLNPTSTELYYPFIM-LAMWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLAGAVALMIAHG 79
Cdd:TIGR01972 252 GFLRFNLPLFPDASLYFAPVLAaLGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGIFSFNELGISGAVFQMISHG 331

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013  80 LTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSTFNWSSLTIVMTGTGT 159
Cdd:TIGR01972 332 LITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLILLGSFKVNPVVAFLAALGI 411

                         170
                  ....*....|.
gi 1378914013 160 LLTATYSLHMF 170
Cdd:TIGR01972 412 VLAAAYMLTLY 422
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 1-170 4.88e-28

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 110.15  E-value: 4.88e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013   1 GIIRITPMLNPTSTELYYPFI-MLAMWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLAGAVALMIAHG 79
Cdd:MTH00204  258 GFLRFSWPLFPAASEYFAPLIvMLSVIAVIYGSLTTCRQVDFKRLIAYSSVAHMGLVPLGLFTHTIEGLVAAVFLMLAHG 337

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013  80 LTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSTFNWSSLTIVMTGTGT 159
Cdd:MTH00204  338 FVSSALFIAVTFLYERHHTRLIKYYRGLTLTMPLFVIIMLVLSLANMGFPLSCNFVGEFFSLLAAFEYSLGLGVLVTSGM 417

                         170
                  ....*....|.
gi 1378914013 160 LLTATYSLHMF 170
Cdd:MTH00204  418 VWSAAYSLYLY 428
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 1-170 1.85e-26

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 105.90  E-value: 1.85e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013   1 GIIRITPMLNPTSTELYYPFIM-LAMWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLAGAVALMIAHG 79
Cdd:MTH00217  255 GFIRFSWPLLPEASEYFSPLIQtLSLLAIIYGSLTTCRQVDLKRIIAYSSVAHMGLVTLGIFSHTIQGLVAAIFLMLAHG 334

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013  80 LTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSTFNWSSLTIVMTGTGT 159
Cdd:MTH00217  335 LVSSALFIAVTFLYERHHTRLIKYYRGMVITMPLFGILMLLLVLANASIPLSCNFVGEFLSLLAAFEYSYIVGVLASLGM 414

                         170
                  ....*....|.
gi 1378914013 160 LLTATYSLHMF 170
Cdd:MTH00217  415 VLSAGYSIYLY 425
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 1-206 5.62e-26

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 104.51  E-value: 5.62e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013   1 GIIRIT-PMLNPTSTELYYPFIMLAMWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLAGAVALMIAHG 79
Cdd:PRK05846  260 GLLRFSlPLFPDASHEFAPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGFVTLGIFAGNQLGIQGAIFQMISHG 339

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013  80 LTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSTFNWSSLTIVMTGTGT 159
Cdd:PRK05846  340 LSSAALFLLVGVLYDRLHTRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTSGFVGEFLILLGSFQVNPVIAFIATTGL 419

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1378914013 160 LLTATYSLHMFLTTQRNKLPTNTANTSPTQTREHLLMMLHIIPVILL 206
Cdd:PRK05846  420 ILAAVYSLWLYQRVMFGPVKNEVAKLKDLNGRELLILLPLVALLLLL 466
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 1-168 3.46e-24

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 99.61  E-value: 3.46e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013   1 GIIRIT-PMLNPTSTELYYPFIMLAMWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLAGAVALMIAHG 79
Cdd:MTH00226  279 GLVRLSwPILPLGAQNLAPAVIAMGIVGIVYGSFATCRQIDVKRLVAYSSVAHMGLVSITLVTHDIIGLTGSIFIMLAHG 358

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013  80 LTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSTFNWSSLTIVMTGTGT 159
Cdd:MTH00226  359 IVSSLLFILVTILYDRHHTRLIKYYRGLSITMPIWGTIMIVTSLANVAVPPSGNFIGEYLSILSSFNWNPIIGVFVCSGV 438


                  ....*....
gi 1378914013 160 LLTATYSLH 168
Cdd:MTH00226  439 ILSAVYSFY 447
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 1-153 5.44e-18

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 81.73  E-value: 5.44e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013   1 GIIRITPMLNPTSTELYYPFIMLAM------WGIIMTssicLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLAGAVAL 74
Cdd:COG0651   254 AILRVLTLLFGADPALFLGTLLLVLglltmlVGALGA----LAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFH 329

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1378914013  75 MIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSTFNWSSLTIV 153
Cdd:COG0651   330 LLNHALAKALLFLAAGAIERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLA 408
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
23-146 1.29e-15

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 74.74  E-value: 1.29e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013  23 LAMWGIIMT---SSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLAGAVALMIAHGLTSSLLFCLANTNYERTHSR 99
Cdd:PRK06473  274 LATWAVVSVlygASCAIAQKDMKKMVAYSSIGHMGYILLAAAAATPLSILAAVFQMISHGLISALLFLLVGVVYKKTGSR 353

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1378914013 100 TMLLARGL---QLILPLMTTWWLLANLMNMALPPTINLTGELLIITSTFN 146
Cdd:PRK06473  354 DVDVLRGLlnpERGLPITGSLMILGVMASAGIPGMVGFIAEFLVFRGSFP 403
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 38-214 2.39e-14

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 71.22  E-value: 2.39e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013  38 QTDLKSLIAYSSVSHMGLVIAATLIQTPWSLAGAVALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTW 117
Cdd:PRK12561  272 QDNVKRRLAYSSVSHMGFVLLGIAAFTDLGISGAMLQMISHGLIAAALFFLTGVTYERTHTLSIPNMGGLAKVMPKTFAL 351

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013 118 WLLANLMNMALPPTINLTGELLI---ITSTFNWSSL----TIVMTGTGTLLTATYSLHM----FLTTQRNKLPTNtANTS 186
Cdd:PRK12561  352 FTASSMASLALPGMSGFVSELTVflgITSSDVYSSTfrtiTILLAAVGLILTPIYLLSMlrrvFYGPRSELLPAL-AVVE 430

                         170       180
                  ....*....|....*....|....*...
gi 1378914013 187 PTQTREHLLMMLHIIPVILLLTKPGLIM 214
Cdd:PRK12561  431 DAKPRELFIALSLLVPIIGIGFYPKLAT 458
ND4 MTH00094
NADH dehydrogenase subunit 4; Provisional
 20-167 2.61e-14

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177157 [Multi-domain]  Cd Length: 403  Bit Score: 70.71  E-value: 2.61e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013  20 FIMLAMWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLAGAVALMIAHGLTSSLLFCLANTNYERTHSR 99
Cdd:MTH00094  216 WIIFSLLGMILSSFCCVFQSDSKSLAAYSSVTHMSFLLLSLVYMSMSGKLSGLMMMLAHGYTSTLMFYLIGEFYHISKSR 295

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1378914013 100 TMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSTFNWSSLTIVMTGTGTLLTATYSL 167
Cdd:MTH00094  296 LIYFMNSFFSSSMFFGLIFSLVFLSNSGVPPSLSFFSEFLIISNSFMKNKFSFFFIFFYFLVSFYYSL 363
ndhD CHL00011
NADH dehydrogenase subunit 4
 1-144 4.01e-14

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 70.36  E-value: 4.01e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013   1 GIIRITPMLNPTSTELYYPFIML-AMWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLAGAVALMIAHG 79
Cdd:CHL00011  260 GLIRINMELLPHAHSIFSPWLVIvGAIQIIYAASTSLGQRNLKKRIAYSSVSHMGFIIIGIGSITDTGLNGAILQIISHG 339

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1378914013  80 LTSSLLFCLANTNYERThsRTMLLAR--GLQLILPLMTTWWLLANLMNMALPPTINLTGELL----IITST 144
Cdd:CHL00011  340 FIGAALFFLAGTSYDRI--RLVYLDEmgGIAIPMPKIFTMFSSFSMASLALPGMSGFVAELIvffgIITSQ 408
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 2-142 1.34e-11

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 63.19  E-value: 1.34e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013   2 IIRITPMLNPTSTELYYP-FIMLAMWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLAGAVALMIAHGL 80
Cdd:PRK02546  263 LLRMNAGMLPDAHAQFAPlLIVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVLIGIGSFTDLGTSGAMLQMISHGL 342

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1378914013  81 TSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIIT 142
Cdd:PRK02546  343 IGASLFFLVGATYDRTHTLMLDEMGGVGQKMRKMFAMWTACSLASLALPGMSGFVAELMVFV 404
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
1-145 4.24e-11

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 61.65  E-value: 4.24e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013   1 GIIRITPMLNPTSTELYYPfiMLAMWGIIMT---SSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLAGAVALMIA 77
Cdd:PRK07363  254 GLLRFGLQLFPQTWSLVAP--GLAIIGTISViygALSAIAQKDIKRMVAYSSIGHMGYILVAAAAGTQLSLLGAVAQMIS 331

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1378914013  78 HGLTSSLLFCLANTNYERTHSRTMLLARGLQLI---LPLMTTWWLLANLMNMALPPTINLTGELLIITSTF 145
Cdd:PRK07363  332 HGLILALLFHLVGIVERKVGTRDLDVLNGLMNPirgLPLTSALLVLAGMASAGIPGLVGFVAEFIVFQGSF 402
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 36-146 4.90e-11

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 61.48  E-value: 4.90e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013  36 LRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLAGAVALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMT 115
Cdd:PRK06458  300 LRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNHSLTKSAIFFASGNVLQKYGTRDINVIRGLLKVSPLTG 379

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1378914013 116 TWWLLANLMNMALPPTINLTGELLIITSTFN 146
Cdd:PRK06458  380 WGLMLGALAIAGMPPFGVFISEFLILTAGLA 410
PRK12650 PRK12650
DUF4040 family protein;
21-131 1.44e-10

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 60.44  E-value: 1.44e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013  21 IMLAMWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLAGAVALMIAHGLTSSLLFCLANTNYERTHSRT 100
Cdd:PRK12650  276 IIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTLAHALFKSSLFMLIGVVDHQAGTRD 355

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1378914013 101 MLLARGLQLILPLMTTWWLLANLMNMALPPT 131
Cdd:PRK12650  356 IRRLGSLWRRMPFTFVSVTIAALSMAAVPPL 386
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 20-140 1.97e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 59.60  E-value: 1.97e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013  20 FIMLAMWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLAGAVALMIAHGLTSSLLFCLANTNYERTHSR 99
Cdd:PRK12667  298 LIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINHAIAKSLLFLASGVFIHAAGTR 377

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1378914013 100 TMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLI 140
Cdd:PRK12667  378 DIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLL 418
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-154 4.68e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 58.35  E-value: 4.68e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013   1 GIIRIT----PMLNPTSTELYYPFIMLAMWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLAGAVALMI 76
Cdd:PRK08375  251 ALIRIYftvfGGDFRFALGLGWLLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLL 330

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013  77 AHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSTF---NWSSLTIV 153
Cdd:PRK08375  331 HHALMKGALFLAAGAIEVTYGTRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKWYLVVGAVeagQWLVLAVL 410


                  .
gi 1378914013 154 M 154
Cdd:PRK08375  411 L 411
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 36-153 1.75e-08

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 54.15  E-value: 1.75e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013  36 LRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLAGAVALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMT 115
Cdd:PRK12647  278 VRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFLVAHSLYKGALFMVAGIIDHETGTRDITKLGGLRRAMPITA 357

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1378914013 116 TWWLLANLMNMALPPTINLTGELLIITSTFN---WSSLTIV 153
Cdd:PRK12647  358 AAALLAALSMAGLPPLFGFLAKELIYEALLEaplWSLILTV 398
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 21-207 1.55e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 50.97  E-value: 1.55e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013  21 IMLAMWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLAGAVALMIAHGLTSSLLFCLANTNYERTHSRT 100
Cdd:PRK06589  284 IFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAFILTPKALGAAILHLVSHSFAKICLFYSMGSIYSLKKEDQ 363

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013 101 MLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSTFNWS--SLTIVMTGTGTLLTATYSLHMFLTTQRNKL 178
Cdd:PRK06589  364 VDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNqpWLSIIVMLVVIASSILSALYLLKILSSIYK 443

                         170       180
                  ....*....|....*....|....*....
gi 1378914013 179 PTNTANTSPTQTrehlLMMLHIIPVILLL 207
Cdd:PRK06589  444 PSLSENSFITKS----LPYLMQISVITCC 468
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 20-144 3.52e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 50.12  E-value: 3.52e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013  20 FIMLAMWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLAGAVALMIAHGLTSSLLFCLANT---NYERT 96
Cdd:PRK12662  282 FMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGSisyHFGTT 361

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1378914013  97 HSRTMLlarGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITST 144
Cdd:PRK12662  362 KLEDCL---NLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAF 406
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 21-146 1.06e-06

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 48.61  E-value: 1.06e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013  21 IMLAMWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLAGAVALMIAHGLTSSLLFCLANTNYERTHSRT 100
Cdd:PRK08377  277 IIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQAGVDAGVFHMINHAIVKALLFLAVGYVGITLGGTE 356

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1378914013 101 MLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSTFN 146
Cdd:PRK08377  357 IEKFEGLGKRMPLTALALTIGALSTVGIPLFNVFWSKFRIILAGLS 402
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 2-154 1.36e-06

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 48.22  E-value: 1.36e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013   2 IIRITPMLnpTSTELYYPFIM-LAMWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQtpwSLAGAVALMIAHGL 80
Cdd:COG1009   261 LARLSPLF--ALSPVWLTVVAiIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVG---AYVAALFHLLTHAF 335

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1378914013  81 TSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSTFNWSSLTIVM 154
Cdd:COG1009   336 FKALLFLGAGSVIHATGTRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAALEAGGLGPLL 409
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 1-86 5.51e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 46.29  E-value: 5.51e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013   1 GIIRITPMLNPTST--ELYYPFIMLAMWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLAGAVALMIAH 78
Cdd:PRK08676  255 GILRLSALLRQSGAaeQFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAH 334


                  ....*...
gi 1378914013  79 GLTSSLLF 86
Cdd:PRK08676  335 SLVKSGLF 342
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 1-151 6.14e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 46.26  E-value: 6.14e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013   1 GIIRItpMLNPTSTELYYPFIML------AMWGIIMTssicLRQTDLKSLIAYSSVSHMGLV---IAATLIQTPW----- 66
Cdd:PRK08667  254 GLVRF--LMDVLSPELWWGVLILlagsisALLGVIYA----LKEHDLKGLLAYSSIENIGIIlmgIGLYVIFGVYgldtl 327

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013  67 ---SLAGAVALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITS 143
Cdd:PRK08667  328 allALGGALFHSLNHALFKSLLFLTAGSVVHATGTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYES 407


                  ....*...
gi 1378914013 144 TFNWSSLT 151
Cdd:PRK08667  408 FFQSFSVA 415
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 18-131 1.88e-05

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 44.99  E-value: 1.88e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013  18 YPFIMLAMWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLAGAVALMIAHGLTSSLLFCLANTNYERTH 97
Cdd:PRK08668  273 YILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLFHVFNHALFKGLFFLIFAAVIYRTG 352

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1378914013  98 SRTMLLARGLQLILPLMTTWWLLANLMNMALPPT 131
Cdd:PRK08668  353 TTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPM 386
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 28-111 3.25e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 44.17  E-value: 3.25e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013  28 IIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIqtpwslAGAVALmiAHGLTSSLLFCLANTNYERTHS--RTMLLAR 105
Cdd:PRK07234  256 ALLGVLFALLEKDLKRMLAFSTISQLGFILAAPLV------GGLYAL--AHGLVKSTLFLCAGALPSRNFTelISQMLGI 327


                  ....*.
gi 1378914013 106 GLQLIL 111
Cdd:PRK07234  328 GKWIPL 333
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 20-154 3.88e-05

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 43.81  E-value: 3.88e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013  20 FIMLAMWGIIMTSSIC--LRQTDLKSLIAYSSVSHMGLV---IAATLIQTPWSLAGAVALMIAHGLTSSLLFCLANTNYE 94
Cdd:PRK06525  273 YVGAVMAIVTLLYGFLmyLPQQDMKRLLAYSTITQLGYMffgLSLAILGSRLALEGSIAYIFNHAFAKSLFFLVAGALSY 352

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013  95 RTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSTFNWSSLTIVM 154
Cdd:PRK06525  353 SCGTRLLPRLRGVLKKLPLVGVGFCVAALAITGVPPFNGFFSKFPIFAAGFELSVEYWIL 412
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 2-86 3.91e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 44.14  E-value: 3.91e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013   2 IIRITPMLNpTSTELYYPFIMLAMWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLAGAVALMIAHGLT 81
Cdd:PRK12644  253 VARLAPGFA-DVPVWRPTVLVLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALAGLAMLLAHALF 331


                  ....*
gi 1378914013  82 SSLLF 86
Cdd:PRK12644  332 KAALF 336
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 36-86 4.69e-05

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 43.57  E-value: 4.69e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1378914013  36 LRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLAGAVALMIAHGLTSSLLF 86
Cdd:COG1007   288 LAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAALFYLLAYLFMNLGAF 338
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
36-82 1.17e-04

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 42.50  E-value: 1.17e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1378914013  36 LRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLAGAVALMIAHGLTS 82
Cdd:PRK05777  289 LSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLFYLLAYLFMT 335
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 21-145 1.38e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 42.39  E-value: 1.38e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013  21 IMLAMWGIIMTSSICLRQTDLKSLIAYSSVSH-----MGLVIAATLIQTPWS-------LAGAVALMIAHGLTSSLLFCL 88
Cdd:PRK08376  291 IILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQigymlLGLGVGLAALGDPAMasygeiaLAGGIYHIVNHALYKALLFLT 370

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1378914013  89 ANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSTF 145
Cdd:PRK08376  371 AGAVIYETGTRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESSA 427
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
21-154 2.01e-04

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 41.56  E-value: 2.01e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013  21 IMLAMWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLAGAVALMIAHGLTSSLLFCLANTNYERTHSRT 100
Cdd:PRK06277  270 IALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLALGTPLGIVAGIFHAINHVIYKSALFLGAGIVSYRTKTSN 349

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1378914013 101 MLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSTF--NWSSLTIVM 154
Cdd:PRK06277  350 LRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKLMLAQAAMqaNMPELAIIM 405
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 1-101 3.63e-03

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 37.95  E-value: 3.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013   1 GIIRITPMLNPTStELYYPFIMLAMWGIIMTSSI--CLRQTDLKSLIAYSSVSHMGLV-----IAATLIQTPWSLAGAVA 73
Cdd:PRK06521  259 GILRVVFDLLGAP-GWWWGVLVLALGAISAVLGVlyALAEHDLKRLLAYSTIENIGIIfvglgLAMVFIAYGMPLLAALA 337

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1378914013  74 LMIA------HGLTSSLLFCLANTNYERTHSRTM 101
Cdd:PRK06521  338 LTAAlyhllnHALFKSLLFLGAGAVLHATGTRDM 371
ND4 MTH00062
NADH dehydrogenase subunit 4; Provisional
 1-153 5.39e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214413 [Multi-domain]  Cd Length: 417  Bit Score: 37.21  E-value: 5.39e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1378914013   1 GIIRITPMLNPTSTELYYPFIMLAMWGIIMTSSICLrqtDLKSLIAYSSVSHMgLVIAATLIQTPWSLAG-AVALMIAHG 79
Cdd:MTH00062  214 GVYRFCGFIFSGSFLGYLFLCCLFSVFFLITACSEL---DGKRWLAFLSLSHI-LVPVLGLFVGDWSSINlSFFYCLGHG 289

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1378914013  80 LTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSTFNWSSLTIV 153
Cdd:MTH00062  290 LSAGLVFLLLWCFYEVSGSRNWVLLKSGINGSLVLRVIVVFSFLSLCSFPPTIQFFCEVFLVSSSFGVLVYLLF 363
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH