|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-128 |
4.95e-81 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 241.61 E-value: 4.95e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375921909 1 QWVWGGFAVDNATLTRFFTFHFMLPFIISAFVMIHLLFLHQTGSNNPLGVNSNTDKIPFHPYFTLKDIIGIIILISSLIM 80
Cdd:MTH00156 152 QWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLIL 231
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1375921909 81 LSLLNPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPMKLG 128
Cdd:MTH00156 232 LTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLG 279
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-124 |
6.78e-36 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 126.44 E-value: 6.78e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375921909 1 QWVWGGFAVDNATLTRFFTFHFM-LPFIISAFVMIHLLFLHQTGSNNPLGVNSNT----DKIPFHPYFTLKDIIGIIILI 75
Cdd:COG1290 173 TWLFGGEFPGDATLNRFFALHVLlLPALLLALVVLHLWLLHRHGHNNPPGPERKKtekvDGVPFHPYYTVKDGFGFFVFL 252
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1375921909 76 SSLIMLSLLNPylLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIP 124
Cdd:COG1290 253 GVFALLAFFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIP 299
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
46-128 |
7.01e-27 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 97.33 E-value: 7.01e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375921909 46 NPLGVNSNTDKIPFHPYFTLKDIIGIIILISSLIMLSLLNPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPM 125
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
...
gi 1375921909 126 KLG 128
Cdd:cd00290 81 KLL 83
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
1-92 |
6.64e-19 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 77.28 E-value: 6.64e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375921909 1 QWVWGGFAVDNATLTRFFTFHFM-LPFIISAFVMIHLLFLHQTGSNNPLGVNSNTDKIPFHPYFTLKDIIGIIILISSLI 79
Cdd:pfam13631 77 WLLFGGPFPGTATIPRFYALHILlLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLI 156
|
90
....*....|...
gi 1375921909 80 MLSLLNPYLLGDP 92
Cdd:pfam13631 157 GLAQINPIWLGGP 169
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-128 |
4.95e-81 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 241.61 E-value: 4.95e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375921909 1 QWVWGGFAVDNATLTRFFTFHFMLPFIISAFVMIHLLFLHQTGSNNPLGVNSNTDKIPFHPYFTLKDIIGIIILISSLIM 80
Cdd:MTH00156 152 QWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLIL 231
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1375921909 81 LSLLNPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPMKLG 128
Cdd:MTH00156 232 LTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLG 279
|
|
| CYTB |
MTH00131 |
cytochrome b; Provisional |
1-128 |
2.16e-71 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 217.98 E-value: 2.16e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375921909 1 QWVWGGFAVDNATLTRFFTFHFMLPFIISAFVMIHLLFLHQTGSNNPLGVNSNTDKIPFHPYFTLKDIIGIIILISSLIM 80
Cdd:MTH00131 162 QWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTS 241
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1375921909 81 LSLLNPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPMKLG 128
Cdd:MTH00131 242 LALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLG 289
|
|
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-128 |
2.83e-71 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 217.46 E-value: 2.83e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375921909 1 QWVWGGFAVDNATLTRFFTFHFMLPFIISAFVMIHLLFLHQTGSNNPLGVNSNTDKIPFHPYFTLKDIIGIIILISSLIM 80
Cdd:MTH00119 163 EWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLT 242
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1375921909 81 LSLLNPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPMKLG 128
Cdd:MTH00119 243 LALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLG 290
|
|
| CYTB |
MTH00191 |
cytochrome b; Provisional |
1-128 |
2.70e-70 |
|
cytochrome b; Provisional
Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 214.78 E-value: 2.70e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375921909 1 QWVWGGFAVDNATLTRFFTFHFMLPFIISAFVMIHLLFLHQTGSNNPLGVNSNTDKIPFHPYFTLKDIIGIIILISSLIM 80
Cdd:MTH00191 159 QWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLF 238
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1375921909 81 LSLLNPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPMKLG 128
Cdd:MTH00191 239 LVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLG 286
|
|
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-128 |
7.85e-70 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 213.73 E-value: 7.85e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375921909 1 QWVWGGFAVDNATLTRFFTFHFMLPFIISAFVMIHLLFLHQTGSNNPLGVNSNTDKIPFHPYFTLKDIIGIIILISSLIM 80
Cdd:MTH00100 162 EWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLML 241
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1375921909 81 LSLLNPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPMKLG 128
Cdd:MTH00100 242 LVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLG 289
|
|
| CYTB |
MTH00145 |
cytochrome b; Provisional |
2-128 |
1.86e-69 |
|
cytochrome b; Provisional
Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 212.84 E-value: 1.86e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375921909 2 WVWGGFAVDNATLTRFFTFHFMLPFIISAFVMIHLLFLHQTGSNNPLGVNSNTDKIPFHPYFTLKDIIGIIILISSLIML 81
Cdd:MTH00145 164 WVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFL 243
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1375921909 82 SLLNPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPMKLG 128
Cdd:MTH00145 244 VLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLG 290
|
|
| CYTB |
MTH00016 |
cytochrome b; Validated |
1-128 |
8.79e-69 |
|
cytochrome b; Validated
Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 211.07 E-value: 8.79e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375921909 1 QWVWGGFAVDNATLTRFFTFHFMLPFIISAFVMIHLLFLHQTGSNNPLGVNSNTDKIPFHPYFTLKDIIGIIILISSLIM 80
Cdd:MTH00016 163 QWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLS 242
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1375921909 81 LSLLNPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPMKLG 128
Cdd:MTH00016 243 VVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLG 290
|
|
| CYTB |
MTH00074 |
cytochrome b; Provisional |
1-128 |
1.27e-68 |
|
cytochrome b; Provisional
Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 210.69 E-value: 1.27e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375921909 1 QWVWGGFAVDNATLTRFFTFHFMLPFIISAFVMIHLLFLHQTGSNNPLGVNSNTDKIPFHPYFTLKDIIGIIILISSLIM 80
Cdd:MTH00074 163 QWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALAL 242
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1375921909 81 LSLLNPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPMKLG 128
Cdd:MTH00074 243 LSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLG 290
|
|
| CYTB |
MTH00034 |
cytochrome b; Validated |
1-128 |
2.72e-64 |
|
cytochrome b; Validated
Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 199.93 E-value: 2.72e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375921909 1 QWVWGGFAVDNATLTRFFTFHFMLPFIISAFVMIHLLFLHQTGSNNPLGVNSNTDKIPFHPYFTLKDIIGIIILISSLIM 80
Cdd:MTH00034 162 QWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSS 241
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1375921909 81 LSLLNPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPMKLG 128
Cdd:MTH00034 242 LALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLG 289
|
|
| CYTB |
MTH00224 |
cytochrome b; Provisional |
1-128 |
2.21e-54 |
|
cytochrome b; Provisional
Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 174.34 E-value: 2.21e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375921909 1 QWVWGGFAVDNATLTRFFTFHFMLPFIISAFVMIHLLFLHQTGSNNPLGVNSNTDKIPFHPYFTLKDIIGIIILISSLIM 80
Cdd:MTH00224 163 EWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSL 242
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1375921909 81 LSLLNPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPMKLG 128
Cdd:MTH00224 243 MVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLG 290
|
|
| CYTB |
MTH00022 |
cytochrome b; Validated |
1-128 |
2.84e-54 |
|
cytochrome b; Validated
Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 174.12 E-value: 2.84e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375921909 1 QWVWGGFAVDNATLTRFFTFHFMLPFIISAFVMIHLLFLHQTGSNNPLGVNSNTDKIPFHPYFTLKDIIGIIILISSLIM 80
Cdd:MTH00022 161 QWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSF 240
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1375921909 81 LSLLNPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPMKLG 128
Cdd:MTH00022 241 IVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLG 288
|
|
| CYTB |
MTH00053 |
cytochrome b; Provisional |
1-128 |
1.71e-53 |
|
cytochrome b; Provisional
Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 172.20 E-value: 1.71e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375921909 1 QWVWGGFAVDNATLTRFFTFHFMLPFIISAFVMIHLLFLHQTGSNNPLGVNSNTDKIPFHPYFTLKDIIGIIILISSLIM 80
Cdd:MTH00053 163 RWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSI 242
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1375921909 81 LSLLNPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPMKLG 128
Cdd:MTH00053 243 IVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLG 290
|
|
| CYTB |
MTH00086 |
cytochrome b; Provisional |
1-128 |
1.67e-42 |
|
cytochrome b; Provisional
Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 142.77 E-value: 1.67e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375921909 1 QWVWGGFAVDNATLTRFFTFHFMLPFIISAFVMIHLLFLHQTGSNNPLGVNSNTDKIPFHPYFTLKDIIGIIILISSLIM 80
Cdd:MTH00086 151 MWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWLVFIIF 230
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1375921909 81 LSLlNPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPMKLG 128
Cdd:MTH00086 231 SLF-YPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVL 277
|
|
| CYTB |
MTH00033 |
cytochrome b; Provisional |
1-128 |
9.27e-41 |
|
cytochrome b; Provisional
Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 138.92 E-value: 9.27e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375921909 1 QWVWGGFAVDNATLTRFFTFHFMLPFIISAFVMIHLLFLHQTGSNNPLGVNSNTDKIPFHPYFTLKDIIGIIILISSLIM 80
Cdd:MTH00033 159 EWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVI 238
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1375921909 81 LSLLN--PYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPMKLG 128
Cdd:MTH00033 239 IGIEPriETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLG 288
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-124 |
6.78e-36 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 126.44 E-value: 6.78e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375921909 1 QWVWGGFAVDNATLTRFFTFHFM-LPFIISAFVMIHLLFLHQTGSNNPLGVNSNT----DKIPFHPYFTLKDIIGIIILI 75
Cdd:COG1290 173 TWLFGGEFPGDATLNRFFALHVLlLPALLLALVVLHLWLLHRHGHNNPPGPERKKtekvDGVPFHPYYTVKDGFGFFVFL 252
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1375921909 76 SSLIMLSLLNPylLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIP 124
Cdd:COG1290 253 GVFALLAFFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIP 299
|
|
| CYTB |
MTH00046 |
cytochrome b; Validated |
2-128 |
4.25e-33 |
|
cytochrome b; Validated
Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 118.55 E-value: 4.25e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375921909 2 WVWGGFAVDNATLTRFFTFHFMLPFIISAFVMIHLLFLHQTGSNNPLGV-NSNTDKIPFHPYFTLKDIIGIIILISSLIM 80
Cdd:MTH00046 154 YIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSsNGYSDVVYFHSYFTVKDLFLFMVVCSLLVF 233
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1375921909 81 LSLLNPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPMKLG 128
Cdd:MTH00046 234 WLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIG 281
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
46-128 |
7.01e-27 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 97.33 E-value: 7.01e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375921909 46 NPLGVNSNTDKIPFHPYFTLKDIIGIIILISSLIMLSLLNPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPM 125
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
...
gi 1375921909 126 KLG 128
Cdd:cd00290 81 KLL 83
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
1-92 |
6.64e-19 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 77.28 E-value: 6.64e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375921909 1 QWVWGGFAVDNATLTRFFTFHFM-LPFIISAFVMIHLLFLHQTGSNNPLGVNSNTDKIPFHPYFTLKDIIGIIILISSLI 79
Cdd:pfam13631 77 WLLFGGPFPGTATIPRFYALHILlLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLI 156
|
90
....*....|...
gi 1375921909 80 MLSLLNPYLLGDP 92
Cdd:pfam13631 157 GLAQINPIWLGGP 169
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
2-45 |
9.79e-16 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 69.70 E-value: 9.79e-16
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 1375921909 2 WVWGGFAVDNATLTRFFTFHFMLPFIISAFVMIHLLFLHQTGSN 45
Cdd:cd00284 157 WLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
|
|
| Cytochrom_B_C |
pfam00032 |
Cytochrome b(C-terminal)/b6/petD; |
97-128 |
7.69e-15 |
|
Cytochrome b(C-terminal)/b6/petD;
Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 64.81 E-value: 7.69e-15
10 20 30
....*....|....*....|....*....|..
gi 1375921909 97 PANPLVTPIHIQPEWYFLFAYAILRSIPMKLG 128
Cdd:pfam00032 1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLG 32
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-43 |
2.83e-14 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 65.87 E-value: 2.83e-14
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 1375921909 1 QWVWGGFAVDNATLTRFFTFHFMLPFIISAFVMIHLLFLHQTG 43
Cdd:pfam00033 147 EWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
|
|
| petD |
CHL00058 |
cytochrome b6/f complex subunit IV |
86-127 |
4.37e-06 |
|
cytochrome b6/f complex subunit IV
Pssm-ID: 176998 Cd Length: 160 Bit Score: 43.45 E-value: 4.37e-06
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1375921909 86 PYLLGDPdnfipANPLVTPIHIQPEWYFLFAYAILRSIPMKL 127
Cdd:CHL00058 59 PSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKL 95
|
|
| petB |
CHL00070 |
cytochrome b6 |
5-48 |
7.85e-05 |
|
cytochrome b6
Pssm-ID: 177009 Cd Length: 215 Bit Score: 40.47 E-value: 7.85e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 1375921909 5 GGFAVDNATLTRFFTFH-FMLPFIISAFVMIHLLFLHQTGSNNPL 48
Cdd:CHL00070 171 GSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
|
|
| PRK03735 |
PRK03735 |
cytochrome b6; Provisional |
5-48 |
3.83e-04 |
|
cytochrome b6; Provisional
Pssm-ID: 179639 Cd Length: 223 Bit Score: 38.54 E-value: 3.83e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 1375921909 5 GGFAVDNATLTRFFTFH-FMLPFIISAFVMIHLLFLHQTGSNNPL 48
Cdd:PRK03735 179 GGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
|
|
|