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Conserved domains on  [gi|1375894997|ref|XP_024438050|]
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WUSCHEL-related homeobox 1 [Populus trichocarpa]

Protein Classification

homeobox domain-containing protein( domain architecture ID 10441114)

homeobox domain-containing protein may be involved in the transcriptional regulation of key eukaryotic developmental processes

CATH:  1.10.10.60
Gene Ontology:  GO:0003677
PubMed:  21557080|26464018|27768937|1357790
SCOP:  4000291

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Homeodomain pfam00046
Homeodomain;
85-144 8.89e-16

Homeodomain;


:

Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 70.99  E-value: 8.89e-16
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375894997  85 SRWNPTPEQLRTLEELYRRgTRTPSTDQIQDITAQLRrygrIEGKNVFYWFQNHKARERQ 144
Cdd:pfam00046   3 KRTTFTPEQLEELEKEFQE-NPYPSAEEREELAAQLG----LTERQVKVWFQNRRAKWKR 57
 
Name Accession Description Interval E-value
Homeodomain pfam00046
Homeodomain;
85-144 8.89e-16

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 70.99  E-value: 8.89e-16
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375894997  85 SRWNPTPEQLRTLEELYRRgTRTPSTDQIQDITAQLRrygrIEGKNVFYWFQNHKARERQ 144
Cdd:pfam00046   3 KRTTFTPEQLEELEKEFQE-NPYPSAEEREELAAQLG----LTERQVKVWFQNRRAKWKR 57
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 85-143 2.61e-08

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 49.94  E-value: 2.61e-08
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1375894997   85 SRWNPTPEQLRTLEELYRRgTRTPSTDQIQDITAQLRrygrIEGKNVFYWFQNHKARER 143
Cdd:smart00389   4 KRTSFTPEQLEELEKEFQK-NPYPSREEREELAKKLG----LSERQVKVWFQNRRAKWK 57
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 86-146 3.97e-06

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 43.77  E-value: 3.97e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1375894997  86 RWNPTPEQLRTLEELYRRgTRTPSTDQIQDITAQLRrygrIEGKNVFYWFQNHKARERQKR 146
Cdd:cd00086     4 RTRFTPEQLEELEKEFEK-NPYPSREEREELAKELG----LTERQVKIWFQNRRAKLKRSE 59
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
90-153 2.75e-03

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 38.19  E-value: 2.75e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1375894997  90 TPEQLRTLEELYRRgTRTPSTDQIQDITAQLRrygrIEGKNVFYWFQNHKARERQKRRRQMESD 153
Cdd:COG5576    59 TDEQLMVLEREFEI-NPYPSSITRIKLSLLLN----MPPKSVQIWFQNKRAKEKKKRSGKVEQR 117
 
Name Accession Description Interval E-value
Homeodomain pfam00046
Homeodomain;
85-144 8.89e-16

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 70.99  E-value: 8.89e-16
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375894997  85 SRWNPTPEQLRTLEELYRRgTRTPSTDQIQDITAQLRrygrIEGKNVFYWFQNHKARERQ 144
Cdd:pfam00046   3 KRTTFTPEQLEELEKEFQE-NPYPSAEEREELAAQLG----LTERQVKVWFQNRRAKWKR 57
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 85-143 2.61e-08

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 49.94  E-value: 2.61e-08
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1375894997   85 SRWNPTPEQLRTLEELYRRgTRTPSTDQIQDITAQLRrygrIEGKNVFYWFQNHKARER 143
Cdd:smart00389   4 KRTSFTPEQLEELEKEFQK-NPYPSREEREELAKKLG----LSERQVKVWFQNRRAKWK 57
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 86-146 3.97e-06

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 43.77  E-value: 3.97e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1375894997  86 RWNPTPEQLRTLEELYRRgTRTPSTDQIQDITAQLRrygrIEGKNVFYWFQNHKARERQKR 146
Cdd:cd00086     4 RTRFTPEQLEELEKEFEK-NPYPSREEREELAKELG----LTERQVKIWFQNRRAKLKRSE 59
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
90-153 2.75e-03

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 38.19  E-value: 2.75e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1375894997  90 TPEQLRTLEELYRRgTRTPSTDQIQDITAQLRrygrIEGKNVFYWFQNHKARERQKRRRQMESD 153
Cdd:COG5576    59 TDEQLMVLEREFEI-NPYPSSITRIKLSLLLN----MPPKSVQIWFQNKRAKEKKKRSGKVEQR 117
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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