|
Name |
Accession |
Description |
Interval |
E-value |
| PTS-II-ABC-beta |
TIGR01995 |
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS ... |
3-614 |
0e+00 |
|
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Pssm-ID: 273919 [Multi-domain] Cd Length: 610 Bit Score: 711.43 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375580967 3 YQKLAKEILANVGGEENVRSVVHCATRLRFKLVNKEKADKKQIESISGVISVVENAGQLQVIIGNTVGDVYKALGsftKL 82
Cdd:TIGR01995 1 YQDLAKAIIENVGGKENIESVTHCATRLRFTLKDDAKADTEKLKKISGVITVVKSGGQYQVVIGNDVNDVYQALM---DV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375580967 83 TDDGDSEIAKGTKDSdGNFLSKAIDVISGIFTPILGALAGGGMLKGLLMILTTFGWLTESSGTYQILYAAADSVFYFLPL 162
Cdd:TIGR01995 78 LGLDDQAEDDDSKGK-KSILNKLIDLISGVFTPLLPALAGAGLLKAVLTLLTMTGLISADSQTYQILNAMGDAVFYFLPI 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375580967 163 ILAYTAARKFGANPPVAIAAAGALVYPTMINLFNEGAHITFLQIPVVLMSYSFSVIPIILAVWFLSILERFLNSKIHEAA 242
Cdd:TIGR01995 157 LLAITAAKRFKVNPYLAAAIGAALLHPTLVAMVGSGKPVTFFGIPVTLMSYSSSVIPVILAVWLMSYVEKFLKKVIPGAL 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375580967 243 KTFLTPMICLMLIVPLTFLAFGPLGTFISQGLASGYTFIYNLSPIVAGAFMGAFWQVLVIFGIHWGFVPIMINNLSRYGR 322
Cdd:TIGR01995 237 KNFLTPLLVMLITVPLTLLIIGPLGNYAGEGISSGILFLYEVSPWLAGALLAALWPVLVMFGLHWAMIPIVINNIATQGF 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375580967 323 DTMI-AMVGPSNFAQAGASLGVFLKTKKPEVKAIAGSAALTGFFGITEPSIYGVTLKYKKPFVIASIAGAIGGAIVGAAG 401
Cdd:TIGR01995 317 DPLIlPASLAANFAQGGAALAVMLRTKNKKLKALAGSATISALFGITEPAIYGVNLPLKKPFYAAMIGGAVGGAIIGIGS 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375580967 402 SSGAANAIPGILTLPIFIGKG----FVGFILGIAVAYILSAIGTYFFGYKDEmadgiAPTTKEAKETGVEAEVIVSPIRG 477
Cdd:TIGR01995 397 VKAFTAFAPGLLGLPMFINPSdganFISALIAIVISFVVSFVLTYFIGFKDQ-----EDVVTQEAAALSKDESLYAPVAG 471
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375580967 478 NIVPLNEVKDEAFSAGLLGKGVAIVPQEGKLISPVNGTIETAFPTGHAIGIRSDKGVEILLHVGFDTVQLNGKYFKLLVA 557
Cdd:TIGR01995 472 EMLPLNEVPDEVFSSGAMGKGIAILPTEGEVVAPVDGTVTAVFPTKHAIGIRSDNGIEILIHVGIDTVELNGEGFEILVK 551
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*..
gi 1375580967 558 QGDRVLVGQALLEFDLEAIKADGYDITTPIVVTNTDAYLDVLISDQKTVNYEDTLLT 614
Cdd:TIGR01995 552 VGDHVKAGQLLLTFDLDKIKEAGYDPTTPVVVTNTKDFLDVIPTDKETVTAGDVLLR 608
|
|
| PRK09824 |
PRK09824 |
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional |
1-614 |
0e+00 |
|
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Pssm-ID: 236627 [Multi-domain] Cd Length: 627 Bit Score: 691.45 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375580967 1 MDYQKLAKEILANVGGEENVRSVVHCATRLRFKLVNKEKADKKQIESISGVISVVENAGQLQVIIGNTVGDVYKALGSFT 80
Cdd:PRK09824 1 MEYTELAREIVAGVGGADNIVSLMHCATRLRFKLKDNSKAQAEVLKKNPGVIMVVESGGQFQVVIGNHVADVFLAVNSVA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375580967 81 KLTDDGDseiAKGTKDSDGNFLSKAIDVISGIFTPILGALAGGGMLKGLLMILTTFGWLTESSGTYQILYAAADSVFYFL 160
Cdd:PRK09824 81 GLGEKAQ---QAPENDKKGNLLNRFIDVISGIFTPLIGVMAATGILKGMLALALTFGWTTEQSGTYKILFAASDALFFFF 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375580967 161 PLILAYTAARKFGANPPVAIAAAGALVYPTMINLFNEGAH-----ITFLQIPVVLMSYSFSVIPIILAVWFLSILERFLN 235
Cdd:PRK09824 158 PIILGYTAGKKFGGNPFTAMVIGGALVHPLMIAAFEAGQKadalgLDFLGIPVTLLNYSSSVIPIIFSAWLCSILERRLN 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375580967 236 SKIHEAAKTFLTPMICLMLIVPLTFLAFGPLGTFISQGLASGYTFIYNLSPIVAGAFMGAFWQVLVIFGIHWGFVPIMIN 315
Cdd:PRK09824 238 AWLPSAIKNFFTPLLCLMVIVPLTFLLIGPLATWLSELLAAGYQWLYQAVPAFAGAVMGAFWQVFVIFGLHWGLVPLMIN 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375580967 316 NLSRYGRDTMIAMVGPSNFAQAGASLGVFLKTKKPEVKAIAGSAALTGFFGITEPSIYGVTLKYKKPFVIASIAGAIGGA 395
Cdd:PRK09824 318 NLTVLGHDTMLPLLMPAVMAQVGAALGVFLCTRDAQKKVVAGSAFLAGLFGITEPAVYGVNLPLKRPFIFGCISGALGAA 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375580967 396 IVGAAGSSGAANAIPGILTLPIFIGKGFV-----GFILGIAVAYILSAIGTYFFGY-KDEMADGIAPTTKEAKETGVEAE 469
Cdd:PRK09824 398 IIGYAQTKVYSFGLPSIFTFMQTIPPTGIdftvwASVIGTVIAIGCAFVGTVMFGFpTAKRQPAQVAPQEKTPEVITPPE 477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375580967 470 V--IVSPIRGNIVPLNEVKDEAFSAGLLGKGVAIVPQEGKLISPVNGTIETAFPTGHAIGIRSDKGVEILLHVGFDTVQL 547
Cdd:PRK09824 478 QggICSPMTGEVVPLEQVADTTFASGLLGKGIAILPSVGEVRSPVAGRVASLFATLHAIGLESDDGVEVLIHVGIDTVKL 557
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1375580967 548 NGKYFKLLVAQGDRVLVGQALLEFDLEAIKADGYDITTPIVVTNTDAYLDVLISDQKTVNYEDTLLT 614
Cdd:PRK09824 558 DGKFFTAHVNVGDKVNTGDLLIEFDIPAIREAGYDLTTPVLISNSDDYTDVLPHATAQVSAGEPLLS 624
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
95-552 |
1.44e-120 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 365.42 E-value: 1.44e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375580967 95 KDSDGNFLSKAIDVISGIFTPILGALAGGGMLKGLLMILTTFGWLTES---SGTYQILYAAADSVFYFLPLILAYTAARK 171
Cdd:COG1263 1 AKKKKNPLFRFLQKIGGIFMPPIPVLPAAGLLLGLGALLTNPGLLGEGsflSGTYQILNAAGDAVFYFLPLLFAIGAAKG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375580967 172 FGANPPVAIAAAGALVYPTMINLFN-EGAHITFLQIPVvLMSYSFSVIPIILAVWFLSILERFLNSKIHEAAKTFLTPMI 250
Cdd:COG1263 81 FGGNPALAAVIGYLLVHPTLLNAYAvAGGYISFLGIPT-LIGYQGGVFPGILAGWLAAYLEKFLKKKLPDALGFFFVPIL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375580967 251 CLMLIVPLTFLAFGPLGTFISQGLASGYTFIYNLSPIVAGAFMGAFWQVLVIFGIHWGFVPIMINNLSRYGRDTMIAMVG 330
Cdd:COG1263 160 TLLIMVPLALLVIGPIWPPIGNGIAAGLGWIYGLAGAIGGFIYGFLYRLLVPTGLHHGLNPIFWFLLGGTGDDGLFPILA 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375580967 331 PSNFAQAGASLGVFLKTK-KPEVKAIAGSAALTGFF-GITEPSIYGVTLKYKKPFVIASIAGAIGGAIVGAAGSSGAANA 408
Cdd:COG1263 240 AAMFGQPGAALAVYLKAKpNKKVKGLAISAALTAFLtGITEPAEFGFNLVAPKLFIAHAIGGGLGGAIAGLLGVKAFSFG 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375580967 409 IPGILTLPIFIGKG---FVGFILGIAVAYILSAIGTYFFGYKDEMADGIAPTTKEAKETGVEAEVIVSpirGNIVPLNEV 485
Cdd:COG1263 320 VGGLIDFPSILNPGatnLLLYLIGLVIAFVYYFVFTFLIGREDEEEEEKLATKADAKKEEAEAAAAAL---GGGGGLLLL 396
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1375580967 486 KDEAFSAGLLGKGVAIVPQEGKLISPVNGTIETAFPTGHAIGIRSDKGVEILLHVGFDTVQLNGKYF 552
Cdd:COG1263 397 EADITVLLLTLVDVVIVVVKDVVKLAAAGAVVVGVGGVGAVGGVGGGGVVIVIVIIILVVVLEGLGE 463
|
|
| PTS-II-BC-sucr |
TIGR01996 |
PTS system, sucrose-specific IIBC component; This model represents the fused enzyme II B and C ... |
2-444 |
6.28e-103 |
|
PTS system, sucrose-specific IIBC component; This model represents the fused enzyme II B and C components of the sucrose-specific PTS sugar transporter system. Sucrose is converted to sucrose-6-phosphate in the process of translocation into the cell. Some of these transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). The exceptions to this rule are Staphylococci, Streptococci, Lactococci, Lactobacilli, etc. which contain their own A domain as a C-terminal fusion. This family is closely related to the trehalose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively).
Pssm-ID: 131051 Cd Length: 461 Bit Score: 320.02 E-value: 6.28e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375580967 2 DYQKLAKEILANVGGEENVRSVVHCATRLRFKLVNKEKADKKQIESISGVISVVENAGQLQVIIGN-TVGDVYKALGSFT 80
Cdd:TIGR01996 1 NYQQVAKEILELLGGKDNIVSVAHCATRLRLVLKDESKIDKKAIENLDGVKGTFFNSGQYQIIIGTgVVNKVYDEIVKLT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375580967 81 KLTDDGDSEIAKGTKdSDGNFLSKAIDVISGIFTPILGALAGGGMLKGLLMILTTFGWLTES--------SGTYQILYAA 152
Cdd:TIGR01996 81 GLSESSTSEQKAEAA-KKMNPFQRFARTLSDIFVPIIPAIVATGLLMGLNGMLTAFGLFGLSgvsvapipEGLAEMINVF 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375580967 153 ADSVFYFLPLILAYTAARKFGANPPVAIAAAGALVYPTMINLFNEGA------HITFLQIPVVLMSYSFSVIPIILAVWF 226
Cdd:TIGR01996 160 TSTAFAFLPILIGFSAAKRFGGNPYLGAVIGLIMVHPSLPNAYGVAAgtatgkAWNIFGLHIPVVGYQGTVLPVLVAVWI 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375580967 227 LSILERFLNSKIHEAAKTFLTPMICLMLIVPLTFLAFGPLGTFISQGLASGYTFIYNLSPIVAGAFMGAFWQVLVIFGIH 306
Cdd:TIGR01996 240 LAKIEKFLRKVVPNALDLLLTPFLTLLITGFLTLLVIGPIGRWVGDVLTDGLQWLYDLPGGLGGLLFGGLYSLIVITGIH 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375580967 307 WGFVPI---MINNLSRyGRDTMIAMVGPSNFAQAGASLGVFLKTKKPEVKAIAGSAALTGFFGITEPSIYGVTLKYKKPF 383
Cdd:TIGR01996 320 HSFHAIetqLLANTKT-GGNFLFPIASMANVAQGGAALAVFFKTKDKKLKGLAIPSGLSALLGITEPAIFGVNLRYRKPF 398
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1375580967 384 VIASIAGAIGGAIVGAAGSSGAANAIPGILTLPIFI--GKGFVGFILGIAVAYILSAIGTYFF 444
Cdd:TIGR01996 399 IAALIGGAIGGAYVVLFHVAATAYGLTGIPGFLSILpsGINLLHYIVGMLIAFAVAFIATLLL 461
|
|
| PRK09796 |
PRK09796 |
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional |
1-460 |
9.69e-83 |
|
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Pssm-ID: 182081 Cd Length: 472 Bit Score: 267.82 E-value: 9.69e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375580967 1 MDYQKLAKEILANVGGEENVRSVVHCATRLRFKLVNKEKADKKQIESISGVISVVENAGQLQVIIGNTVGDVYKALGSFT 80
Cdd:PRK09796 3 KNYAALARSVIAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTIPGVLGVVRSDNQCQVIIGNTVSQAFQEVVSLL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375580967 81 KLTDDGDSEIAKgTKDSDGNFLSKAIDVISGIFTPILGALAGGGMLKGLLMILTTFGWLTESSGTYQILYAAADSVFYFL 160
Cdd:PRK09796 83 PGDMQPAQPVGK-PKLTLRRIGAGILDALIGTMSPLIPAIIGGSMVKLLAMILEMSGVLTKGSPTLTILNVIGDGAFFFL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375580967 161 PLILAYTAARKFGANPPVAIAAAGALVYPTMINLF---NEGAHITFLQIPVVLMSYSFSVIPIILAVWFLSILERFLNSK 237
Cdd:PRK09796 162 PLMVAASAAIKFKTNMSLAIAIAGVLVHPSFIELMakaAQGEHVEFALIPVTAVKYTYTVIPALVMTWCLSYIERWVDRI 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375580967 238 IHEAAKTFLTPMICLMLIVPLTFLAFGPLGTFISQGLASGYTFIYNLSPIVAGAFMGAFWQVLVIFGIHWGFVPIMINNL 317
Cdd:PRK09796 242 TPAVTKNFLKPMLIVLIAAPLAILLIGPIGIWIGSAISALVYTIHGYLGWLSVAIMGALWPLLVMTGMHRVFTPTIIQTI 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375580967 318 SRYGRDtmiAMVGPS----NFAQAGASLGVFLKTKKPEVKAIAGSAALTGFF-GITEPSIYGVTLKYKKPFVIASIAGAI 392
Cdd:PRK09796 322 AETGKE---GMVMPSeigaNLSLGGSSLAVAWKTKNPELRQTALAAAASAIMaGISEPALYGVAIRLKRPLIASLISGFI 398
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1375580967 393 GGAIVGAAGSSGAANAIPGILTLPIFIGKG---FVGFILGI-AVAYILSAIGTYFFGYKDEMADGIAPTTKE 460
Cdd:PRK09796 399 CGAVAGMAGLASHSMAAPGLFTSVQFFDPAnpmSIVWVFAVmALAVVLSFILTLLLGFEDIPVEEAAAEARK 470
|
|
| NagE |
COG2190 |
Phosphotransferase system IIA component [Carbohydrate transport and metabolism]; |
467-614 |
2.81e-68 |
|
Phosphotransferase system IIA component [Carbohydrate transport and metabolism];
Pssm-ID: 441793 [Multi-domain] Cd Length: 154 Bit Score: 218.84 E-value: 2.81e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375580967 467 EAEVIVSPIRGNIVPLNEVKDEAFSAGLLGKGVAIVPQEGKLISPVNGTIETAFPTGHAIGIRSDKGVEILLHVGFDTVQ 546
Cdd:COG2190 4 KTLTIYAPVSGEVVPLSEVPDPVFASKMMGDGVAIEPTGGKVVAPVDGTVTSVFPTKHAIGLTSDDGLEVLIHIGIDTVK 83
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1375580967 547 LNGKYFKLLVAQGDRVLVGQALLEFDLEAIKADGYDITTPIVVTNTDAYLDVLISDQKTVNYEDTLLT 614
Cdd:COG2190 84 LNGEGFTVLVKEGDKVKAGDPLIEFDLDAIKAAGYSLITPVVVTNSDEYKSVELTKSGQVKAGDPLLT 151
|
|
| PTS_EIIA_1 |
pfam00358 |
phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; |
469-589 |
1.17e-58 |
|
phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1;
Pssm-ID: 459779 [Multi-domain] Cd Length: 121 Bit Score: 192.21 E-value: 1.17e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375580967 469 EVIVSPIRGNIVPLNEVKDEAFSAGLLGKGVAIVPQEGKLISPVNGTIETAFPTGHAIGIRSDKGVEILLHVGFDTVQLN 548
Cdd:pfam00358 1 IEIYSPVSGEVIPLSEVPDPVFSQKMMGDGVAIEPSEGKVYAPVDGTVTTVFPTKHAIGITTDDGVEVLIHIGIDTVKLK 80
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1375580967 549 GKYFKLLVAQGDRVLVGQALLEFDLEAIKADGYDITTPIVV 589
Cdd:pfam00358 81 GEGFESLVKEGDKVKAGDLLLEFDLEAIKAAGYSTTTPVVV 121
|
|
| PRK11007 |
PRK11007 |
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional |
14-439 |
3.00e-57 |
|
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional
Pssm-ID: 182896 Cd Length: 473 Bit Score: 199.91 E-value: 3.00e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375580967 14 VGGEENVRSVVHCATRLRFKLVNKEKADKKQIESISGVISVVENAGQLQVIIGNTVGDVYKALGSFTKLTdDGDSEIAKG 93
Cdd:PRK11007 17 VGGRENIATVSHCITRLRFVLNDPANADPKEIEQLPMVKGCFTNAGQFQVVIGTEVGDYYKALIATTGQA-EVDKEQAKK 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375580967 94 TKDSDGNFLSKAIDVISGIFTPILGALAGGGMLKGLLMILTTFGW-----LTESSGTYQILYA----AADSVFYFLPLIL 164
Cdd:PRK11007 96 AARQNMKWHERLISHFAEIFFPLLPALISGGLILGFRNVIGDIPMsdgqtLAQMYPFWQTIYDflwlIGEAIFFYLPVGI 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375580967 165 AYTAARKFGANPPVAIAAAGALVYPTMINLFNEGAhitflQIPVVL---------MSYSFSVIPIILAVWFLSILERFLN 235
Cdd:PRK11007 176 CWSAVKKMGGTPILGIVLGVTLVSPQLMNAYLLGQ-----QLPEVWdfglfsiekVGYQAQVIPALLAGLALGFIETRLK 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375580967 236 SKIHEAAKTFLTPMICLMLIVPLTFLAFGPLGTFISQGLASGYTFIY--NLSPIVAGAFmGAFWQVLVIFGIHWGFVPIM 313
Cdd:PRK11007 251 RIVPDYLYLVVVPVCSLILAVFLAHALIGPFGRMIGDGVAFAVKALMtgSFAPIGAALF-GFLYAPLVITGVHQTTLAID 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375580967 314 INNLSRYGRDTMIAMVGPSNFAQAGASLGVFLKTKKPEVKAIAGSAALTGFFGITEPSIYGVTLKYKKPFVIASIAGAIG 393
Cdd:PRK11007 330 LQMIQSMGGTPVWPLIALSNIAQASAVVGIIIISRKHNEREISVPAAISAYLGVTEPAMYGINLKYRFPMLCAMIGSALA 409
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 1375580967 394 GAIVGAAGSSGAAN---AIPGILTL-PIFIGKGFVGFILGIAVAYILSAI 439
Cdd:PRK11007 410 GLICGLNGVMANGIgvgGLPGILSIqPQYWQVYALAMLVAIVVPIVLTSF 459
|
|
| pts-Glc |
TIGR00852 |
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside ... |
153-419 |
5.50e-57 |
|
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIC domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273299 Cd Length: 289 Bit Score: 193.69 E-value: 5.50e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375580967 153 ADSVFYFLPLILAYTAARKFGANPPVAIAAAGALVYPTMINLFNEGA--HITFLQIPVVLMSYSFSVIPIILAVWFLSIL 230
Cdd:TIGR00852 1 GSAAFFFLPLLFAIGAAKGFGGNPYLGAALAGILVHPVLNNAMGVGAqaVGNFFGFEIAKVGYTGVVGPIIVGAIALALH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375580967 231 ERFLNSKIHEAAKTFLTPMICLMLIVPLTFLAFGPLGTFI-SQGLASGYTFIYNLSPIVAGAFMGAFWQVLVIFGIHWGF 309
Cdd:TIGR00852 81 ERFLDKKLPDVLGFFLGPRFVVIIAGFVAILLIGPLGRVWpPVGISALLHWLYSAGGALGGAIFGFLYRLLVPTGLHHIF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375580967 310 VPIMINNL---SRYGRDTMIAMVGPSNFAQAGASLGVFLKTKKPEVKAIAGSAALTGFFGITEPSIYGVTLKYKKPFVIA 386
Cdd:TIGR00852 161 YAIFIQLIaggTVIGGGQVIPGDALANMAQGGAALAVFFTAGDAKFKSIGLPAAFSAGLGITEPAMYGVALRERRPFVAG 240
|
250 260 270
....*....|....*....|....*....|...
gi 1375580967 387 SIAGAIGGAIVGAAGSSGAANAIPGILTLPIFI 419
Cdd:TIGR00852 241 LIGSALLTAFLTGITEPLEFLFLFGAPGLYSIH 273
|
|
| PTS_IIA_glc |
cd00210 |
PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: ... |
471-593 |
6.13e-54 |
|
PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Pssm-ID: 238128 [Multi-domain] Cd Length: 124 Bit Score: 179.79 E-value: 6.13e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375580967 471 IVSPIRGNIVPLNEVKDEAFSAGLLGKGVAIVPQEGKLISPVNGTIETAFPTGHAIGIRSDKGVEILLHVGFDTVQLNGK 550
Cdd:cd00210 1 LASPITGEIVPLDQVPDEVFASKMMGDGFAIKPSDGKVVAPVDGTIVQIFPTKHAIGIESDSGVEILIHIGIDTVKLNGE 80
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1375580967 551 YFKLLVAQGDRVLVGQALLEFDLEAIKADGYDITTPIVVTNTD 593
Cdd:cd00210 81 GFTSHVEEGQRVKQGDKLLEFDLPAIKAAGLDDTTPVIVTNSD 123
|
|
| PTBA |
TIGR00830 |
PTS system, glucose subfamily, IIA component; These are part of the The PTS Glucose-Glucoside ... |
471-591 |
8.51e-54 |
|
PTS system, glucose subfamily, IIA component; These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. The three-dimensional structures of the IIA and IIB domains of the E. coli glucose permease have been elucidated. IIAglchas a complex b-sandwich structure while IIBglc is a split ab-sandwich with a topology unrelated to the split ab-sandwich structure of HPr. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273289 [Multi-domain] Cd Length: 121 Bit Score: 179.36 E-value: 8.51e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375580967 471 IVSPIRGNIVPLNEVKDEAFSAGLLGKGVAIVPQEGKLISPVNGTIETAFPTGHAIGIRSDKGVEILLHVGFDTVQLNGK 550
Cdd:TIGR00830 1 IVSPISGEIVPLDQVPDEVFASKIVGDGFAILPTDGKVVAPVDGKIGKIFPTKHAFGIESDNGVEILIHIGIDTVKLNGE 80
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1375580967 551 YFKLLVAQGDRVLVGQALLEFDLEAIKADGYDITTPIVVTN 591
Cdd:TIGR00830 81 GFTSHVEEGDRVKKGDPLLEFDLKAIKKKGYSITTPVVVTN 121
|
|
| murP |
PRK09586 |
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed |
4-448 |
1.74e-40 |
|
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed
Pssm-ID: 181971 [Multi-domain] Cd Length: 476 Bit Score: 154.06 E-value: 1.74e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375580967 4 QKLAKEILANVGGEENVRSVVHCATRLRFKLVNKEKADKKQIESISGVISVVENAGQLQVIIG----NTVGDVYKALGSF 79
Cdd:PRK09586 6 SELLNTILTRVGGPGNIASCGNCMTRLRLTLHDSSLVDPAAIKTIEGVKGVILSDDQVQVVLGpgkaQRAAKAMNELLGE 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375580967 80 TKLTDDGDSEIAKGTK--------DSDGNFLSKaidvISGIFTPILGALAGGGMLKGLLMILTTF--------GWLTESS 143
Cdd:PRK09586 86 AAAPVQDLAEIAAQNKrqlkakqtSGVQQFLAK----FATIFTPLIPGFIAAGLLLGIATLIEQVmhvpadaqGTLPDAL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375580967 144 GTYQILyaaADSVFYFLPLILAYTAARKFGANppvaiAAAGALVYPTMINLFNEGAHITFLQIPVVLMSYSF----SVIP 219
Cdd:PRK09586 162 NYMKVF---SKGLFTFLSILIGYNAQQAFGGT-----GVNGAIIASLFLLGYNPAATTGYYAGFHDFFGLPIdprgNIIG 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375580967 220 IILAVWFLSILERFLNSKIHEAAKTFLTPMICLMLIVPLTFLAFGPLGTFISQGLAsgYTFIY-NLSP----IVAGAFMg 294
Cdd:PRK09586 234 VLIAAIAGARIERMVRRFMPDDLDMILTSLITLLITGALAFLIIMPLGGWLFEGMS--WLFMHlNSNPfgcaVLAGLFL- 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375580967 295 afwqVLVIFGIHWGFVPIMINNLSRYGRDTMIAMVGPSNFAQAGASLGVFLKTKKPEV--KAIAGsAALTGFFGITEPSI 372
Cdd:PRK09586 311 ----IAVVFGVHQGFIPVYFALMDSQGFNSLFPILAMAGAGQVGAALALYWRAQKHSAlrTQVKG-AIIPGLLGVGEPLI 385
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375580967 373 YGVTLKYKKPFVIASIAGAIGGAIVGAAGSSGAANAI------PGILTLPIF-----IGKGFVGFILGIAVAYILSAIGT 441
Cdd:PRK09586 386 YGVTLPRMKPFVTACLGGAAGGFFIGLIAWLGLPVGLnsvfgpSGLVALPLMtsaqgILPGMAVYAGGLLVAYVCGFIFT 465
|
....*..
gi 1375580967 442 YFFGYKD 448
Cdd:PRK09586 466 TLFGCKN 472
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
110-391 |
9.39e-32 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 125.54 E-value: 9.39e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375580967 110 SGIFTPILGALAGGGMLKGLL-----MILTTFGWLTESSGTYQILYAAADSVFYFLPLILAYTAARKF-GANPPVAIAAA 183
Cdd:pfam02378 1 GDGFMPPIPLLIAGGILLGLGnlpndTTGLPAGGFTGDSPLAEILKQAGSAAFGILPILFAIGIAYGLaGGDGVAGAAGL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375580967 184 GALVYPT-------MINLFNEGAHITFLQIPVVLMSYSFSVIPIILAVWFLSILERFLNSKIHE----AAKTFLTPMICL 252
Cdd:pfam02378 81 IGLLSFNlaaaisvALTAAGLSGGGNILGIGLGATGVFGAIIPGLLAAYLYNRFEKNITIKLPDslpfFVGKRFVPIITG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375580967 253 MLIVPLTFLAFGPLGTFISQGLASGYTFIYNLSPIVAGAFMGAFWQVLVIFGIHWGFVPI----------MINNLSRYGR 322
Cdd:pfam02378 161 FVTLLVIGPVLGLIWPAIQGGLNALGLLLIIAGGILGGLIFGFLERLLWPFGLHGAFIAIfwflpiggsnPIANQQAYGA 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1375580967 323 DTMIAMVGP-----SNFAQAGASLGVFLKTKKPEVKAIAGSAALT-GFFGITEPSIYGVTLKYKKPFVIASIAGA 391
Cdd:pfam02378 241 GAAHILTGGfdvmfGGPGATLALYAAAFLFKKSKVKKLLGSAALTpFLFGITEPLEFGFPFVLNPPFFIPAILAG 315
|
|
| PRK09439 |
PRK09439 |
PTS system glucose-specific transporter subunit; Provisional |
459-593 |
5.02e-30 |
|
PTS system glucose-specific transporter subunit; Provisional
Pssm-ID: 181859 [Multi-domain] Cd Length: 169 Bit Score: 116.23 E-value: 5.02e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375580967 459 KEAKETGVEaevIVSPIRGNIVPLNEVKDEAFSAGLLGKGVAIVPQEGKLISPVNGTIETAFPTGHAIGIRSDKGVEILL 538
Cdd:PRK09439 14 DKKDTGTIE---IIAPLSGEIVNIEDVPDVVFAEKIVGDGIAIKPTGNKMVAPVDGTIGKIFETNHAFSIESDSGVELFV 90
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1375580967 539 HVGFDTVQLNGKYFKLLVAQGDRVLVGQALLEFDLEAIKADGYDITTPIVVTNTD 593
Cdd:PRK09439 91 HFGIDTVELKGEGFKRIAEEGQRVKVGDPIIEFDLPLLEEKAKSTLTPVVISNMD 145
|
|
| PTS_IIB_glc |
cd00212 |
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ... |
4-76 |
4.17e-29 |
|
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Pssm-ID: 238130 [Multi-domain] Cd Length: 78 Bit Score: 110.32 E-value: 4.17e-29
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1375580967 4 QKLAKEILANVGGEENVRSVVHCATRLRFKLVNKEKADKKQIESISGVISVVENAGQLQVIIGNTVGDVYKAL 76
Cdd:cd00212 1 EQLAKDILEALGGKENIVSLDHCATRLRLTVKDESKVDEAALKKLGGVKGVVKNGGQYQVIIGPGVADVYKEA 73
|
|
| PtsG2 |
COG1264 |
Phosphotransferase system IIB components [Carbohydrate transport and metabolism]; |
4-76 |
8.24e-28 |
|
Phosphotransferase system IIB components [Carbohydrate transport and metabolism];
Pssm-ID: 440876 [Multi-domain] Cd Length: 76 Bit Score: 106.36 E-value: 8.24e-28
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1375580967 4 QKLAKEILANVGGEENVRSVVHCATRLRFKLVNKEKADKKQIESIsGVISVVENAGQLQVIIGNTVGDVYKAL 76
Cdd:COG1264 1 KELAKDILEALGGKENIVSVDHCATRLRVTVKDPSKVDEAALKKL-GVKGVVKNGGQVQVIIGPGVDKVADEI 72
|
|
| PRK10255 |
PRK10255 |
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional |
455-606 |
1.14e-26 |
|
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Pssm-ID: 182338 [Multi-domain] Cd Length: 648 Bit Score: 114.97 E-value: 1.14e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375580967 455 APTTK-EAKETGVEAEVIVSPIRGNIVPLNEVKDEAFSAGLLGKGVAIVPQEGKLISPVNGTIETAFPTGHAIGIRSDKG 533
Cdd:PRK10255 484 APVAKpQAVPNAVSIAELVSPITGDVVALDQVPDEAFASKAVGDGVAVKPTDKIVVSPAAGTIVKIFNTNHAFCLETEKG 563
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1375580967 534 VEILLHVGFDTVQLNGKYFKLLVAQGDRVLVGQALLEFDLEAIKADGYDITTPIVVTNTDAYLDVLISDQKTV 606
Cdd:PRK10255 564 AEIVVHMGIDTVALEGKGFKRLVEEGAQVSAGQPILEMDLDYLNANARSMISPVVCSNIDDFSGLIIKAQGHV 636
|
|
| PTS_EIIB |
pfam00367 |
phosphotransferase system, EIIB; |
8-39 |
1.74e-12 |
|
phosphotransferase system, EIIB;
Pssm-ID: 459785 [Multi-domain] Cd Length: 32 Bit Score: 61.61 E-value: 1.74e-12
10 20 30
....*....|....*....|....*....|..
gi 1375580967 8 KEILANVGGEENVRSVVHCATRLRFKLVNKEK 39
Cdd:pfam00367 1 KEILEALGGKENIKSVDHCATRLRLTVKDESK 32
|
|
| EIIB_glc |
TIGR00826 |
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) ... |
28-111 |
2.27e-10 |
|
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIB domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273288 [Multi-domain] Cd Length: 88 Bit Score: 57.37 E-value: 2.27e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375580967 28 TRLRFKLVNKEKADKKQIESISGVISVVENAGQLQVIIGN-TVGDVYKAlgsFTKL-TDDGDS-----EIAKGTKDSDGN 100
Cdd:TIGR00826 1 TRLRLKTPGREKADEEAIAAGEGVKGVFTAAGQIQALGGTgNVNKVDAC---ITRLrVGVADVskvddAVLKKLGAHGVN 77
|
90
....*....|.
gi 1375580967 101 FLSKAIDVISG 111
Cdd:TIGR00826 78 PLQRAVQVISG 88
|
|
| PRK14905 |
PRK14905 |
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; ... |
3-66 |
9.47e-09 |
|
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Pssm-ID: 184898 [Multi-domain] Cd Length: 355 Bit Score: 57.73 E-value: 9.47e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1375580967 3 YQKLAKEILANVGGEENVRSVVHCATRLRFKLVNKEKADKKQIESISGVISVVENAGQLQVIIG 66
Cdd:PRK14905 274 FSEIAIQLIDHLGGKDNISALTHCASRIRVMLRNDGHIDKSAIEKIDCVKGLFSIANQYQIILG 337
|
|
| PRK10110 |
PRK10110 |
PTS maltose transporter subunit IICB; |
7-78 |
9.65e-05 |
|
PTS maltose transporter subunit IICB;
Pssm-ID: 182245 [Multi-domain] Cd Length: 530 Bit Score: 45.49 E-value: 9.65e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1375580967 7 AKEILANVGGEENVRSVVHCATRLRFKLVNKEKADKKQIESiSGVISVVE-NAGQLQVIIGNTVGDVYKALGS 78
Cdd:PRK10110 452 VPAILEALGGADNIVSLDNCITRLRLSVKDMSLVDVQALKD-NRAIGVVQlNQHNLQVVIGPQVQSVKDEMAG 523
|
|
| EIIB_glc |
TIGR00826 |
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) ... |
6-66 |
3.15e-04 |
|
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIB domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273288 [Multi-domain] Cd Length: 88 Bit Score: 40.03 E-value: 3.15e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1375580967 6 LAKEILANVGGEENVRSVVHCATRLRFKLVNKEKADKKQIESIsGVISVVENAGQLQVIIG 66
Cdd:TIGR00826 29 TAAGQIQALGGTGNVNKVDACITRLRVGVADVSKVDDAVLKKL-GAHGVNPLQRAVQVISG 88
|
|
| PRK09702 |
PRK09702 |
PTS sugar transporter subunit IIB; |
7-79 |
7.01e-03 |
|
PTS sugar transporter subunit IIB;
Pssm-ID: 77355 [Multi-domain] Cd Length: 161 Bit Score: 37.77 E-value: 7.01e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1375580967 7 AKEILANVGGEENVRSVVHCATRLRFKLVNKEKADKKQIESISGVISVVENAGQLQVIIGNTVGDVYKALGSF 79
Cdd:PRK09702 73 AAGILQALGGVGNISSINNCATRLRIALHDMSQTLDDEVFKKLGAHGVFRSGDAIQVIIGLHVSQLREQLDSL 145
|
|
| |
