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Conserved domains on  [gi|1373650796|gb|AVV17055|]
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pyruvyl-transferase [Listeria monocytogenes]

Protein Classification

polysaccharide pyruvyl transferase family protein( domain architecture ID 10514996)

polysaccharide pyruvyl transferase family protein may be involved in peptidoglycan-associated polymer biosynthesis; similar to Sinorhizobium meliloti succinoglycan biosynthesis protein ExoV

EC:  2.-.-.-
Gene Ontology:  GO:0016740
SCOP:  3001586

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
WcaK super family cl42583
Polysaccharide pyruvyl transferase family protein WcaK (colanic acid biosynthesis) [Cell wall ...
19-337 1.68e-16

Polysaccharide pyruvyl transferase family protein WcaK (colanic acid biosynthesis) [Cell wall/membrane/envelope biogenesis];


The actual alignment was detected with superfamily member COG2327:

Pssm-ID: 441900 [Multi-domain]  Cd Length: 357  Bit Score: 80.87  E-value: 1.68e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373650796  19 GFNN-GNLAYQYSIYRAL--WNDDVEIHAdgLSSNPNLAEKIN-----------------ENYDLYVMP----LADAFRD 74
Cdd:COG2327    10 GFGNlGDEALLEALLQLLrkRLPDAEITV--LSGNPEETRKRYgvravprrnfleilralRRADLVISGggglLQDVTSL 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373650796  75 DFRPVLRNYTQLIRKLKIPVIVTGVGlranYEPQLDEGFSFdedvtnFVKAVLEKSAQIGVRGQITADYLKKLGFNAElD 154
Cdd:COG2327    88 RSLLYYLGLVLLAKLLGKPVVIYGQG----IGPFKSPLSRR------LLRRVLNRADLISVRDEASAELLKDLGVKKP-P 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373650796 155 FRVIGCPslyTFGREIKLRDFHL-TDQSTIAINASPTSS------EIAINFLNNMITTYK-DYHFIPQHLDEFH-LMYAG 225
Cdd:COG2327   157 IELTPDP---AFLLPPEPVDKEApLERPVVGVNLRPWRGleedylEALAAALDRLIERTGyKVVLLPHQYGQEDdLAIAE 233
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373650796 226 gpDISSDINGYPTNIQHKYyqegrvkyftSMPSWFDFVKKVDFSIGSRLHGNVIPTIVGTPNISFVQDARMRELASYHAL 305
Cdd:COG2327   234 --ELAAKLKERVVVLDEEL----------DPDELLSLIARADLVIGMRLHALIFALSAGVPVIALSYDPKVRGLMEDLGL 301
                         330       340       350
                  ....*....|....*....|....*....|..
gi 1373650796 306 PHVTIDelEKTNNLQELLTKVDLKSAEKVQAR 337
Cdd:COG2327   302 PDYVLD--LDDLDPEELLAAVEELLANREELR 331
HOOK super family cl38191
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from ...
389-501 3.04e-04

HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organizms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas this central coiled-coil motif mediates homodimerization and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localized to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. This entry includes the central coiled-coiled domain and the divergent C-terminal domain.


The actual alignment was detected with superfamily member pfam05622:

Pssm-ID: 461694 [Multi-domain]  Cd Length: 528  Bit Score: 43.14  E-value: 3.04e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373650796 389 EMLNRVKISTNLLKERHDFSTRYRVNLVNNQLTQLKKTTSE---QNKKYQQKITETQEKNQQLEKQLTD----------T 455
Cdd:pfam05622 282 EKLIRLQHENKMLRLGQEGSYRERLTELQQLLEDANRRKNEletQNRLANQRILELQQQVEELQKALQEqgskaedsslL 361
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1373650796 456 KQKLQLTINKNHELTNKIRHYQGTL----NRKSVKTTLKVANSLANLKKK 501
Cdd:pfam05622 362 KQKLEEHLEKLHEAQSELQKKKEQIeelePKQDSNLAQKIDELQEALRKK 411
 
Name Accession Description Interval E-value
WcaK COG2327
Polysaccharide pyruvyl transferase family protein WcaK (colanic acid biosynthesis) [Cell wall ...
19-337 1.68e-16

Polysaccharide pyruvyl transferase family protein WcaK (colanic acid biosynthesis) [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 441900 [Multi-domain]  Cd Length: 357  Bit Score: 80.87  E-value: 1.68e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373650796  19 GFNN-GNLAYQYSIYRAL--WNDDVEIHAdgLSSNPNLAEKIN-----------------ENYDLYVMP----LADAFRD 74
Cdd:COG2327    10 GFGNlGDEALLEALLQLLrkRLPDAEITV--LSGNPEETRKRYgvravprrnfleilralRRADLVISGggglLQDVTSL 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373650796  75 DFRPVLRNYTQLIRKLKIPVIVTGVGlranYEPQLDEGFSFdedvtnFVKAVLEKSAQIGVRGQITADYLKKLGFNAElD 154
Cdd:COG2327    88 RSLLYYLGLVLLAKLLGKPVVIYGQG----IGPFKSPLSRR------LLRRVLNRADLISVRDEASAELLKDLGVKKP-P 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373650796 155 FRVIGCPslyTFGREIKLRDFHL-TDQSTIAINASPTSS------EIAINFLNNMITTYK-DYHFIPQHLDEFH-LMYAG 225
Cdd:COG2327   157 IELTPDP---AFLLPPEPVDKEApLERPVVGVNLRPWRGleedylEALAAALDRLIERTGyKVVLLPHQYGQEDdLAIAE 233
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373650796 226 gpDISSDINGYPTNIQHKYyqegrvkyftSMPSWFDFVKKVDFSIGSRLHGNVIPTIVGTPNISFVQDARMRELASYHAL 305
Cdd:COG2327   234 --ELAAKLKERVVVLDEEL----------DPDELLSLIARADLVIGMRLHALIFALSAGVPVIALSYDPKVRGLMEDLGL 301
                         330       340       350
                  ....*....|....*....|....*....|..
gi 1373650796 306 PHVTIDelEKTNNLQELLTKVDLKSAEKVQAR 337
Cdd:COG2327   302 PDYVLD--LDDLDPEELLAAVEELLANREELR 331
PS_pyruv_trans pfam04230
Polysaccharide pyruvyl transferase; Pyruvyl-transferases involved in peptidoglycan-associated ...
86-293 8.11e-09

Polysaccharide pyruvyl transferase; Pyruvyl-transferases involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora.


Pssm-ID: 427804  Cd Length: 233  Bit Score: 56.10  E-value: 8.11e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373650796  86 LIRKLKIPVIVTGVGLranyepqldeGFSFDEDVTNFVKAVLEKSAQIGVRGQITADYLKKLGFNAELdfRVIGCPSLYt 165
Cdd:pfam04230  87 VAKKLGKPVILLGQGI----------GPFLNEALRKLLKKILSKADLISVRDELSYELLEKLGIKENV--ELVPDPAFL- 153
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373650796 166 FGREIKLRDFHLTDQSTIAINASPTSSEIAINflnnmittyKDYHFIPQHLDEfhlmyaggpdissdingyptniqhkyy 245
Cdd:pfam04230 154 LDKLPPKEIKKKPKKDYISIAKSSKKDLEDLN---------EKLALLYDLPEE--------------------------- 197
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1373650796 246 qegrvkyftsmpsWFDFVKKVDFSIGSRLHGNVIPTIVGTPNISFVQD 293
Cdd:pfam04230 198 -------------LLSLISQADFVITTRLHGLILALLFGVPFIVIAYD 232
HOOK pfam05622
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from ...
389-501 3.04e-04

HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organizms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas this central coiled-coil motif mediates homodimerization and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localized to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. This entry includes the central coiled-coiled domain and the divergent C-terminal domain.


Pssm-ID: 461694 [Multi-domain]  Cd Length: 528  Bit Score: 43.14  E-value: 3.04e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373650796 389 EMLNRVKISTNLLKERHDFSTRYRVNLVNNQLTQLKKTTSE---QNKKYQQKITETQEKNQQLEKQLTD----------T 455
Cdd:pfam05622 282 EKLIRLQHENKMLRLGQEGSYRERLTELQQLLEDANRRKNEletQNRLANQRILELQQQVEELQKALQEqgskaedsslL 361
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1373650796 456 KQKLQLTINKNHELTNKIRHYQGTL----NRKSVKTTLKVANSLANLKKK 501
Cdd:pfam05622 362 KQKLEEHLEKLHEAQSELQKKKEQIeelePKQDSNLAQKIDELQEALRKK 411
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
396-501 7.61e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 39.27  E-value: 7.61e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373650796  396 ISTNLLKERHDfsTRYRVNLVNNQLTQLKKTTSEQNKKYQQKITETQEKNQQLEKQLTDTKQKLQLTINKNHELTNKIRH 475
Cdd:TIGR02168  229 LLVLRLEELRE--ELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQI 306
                           90       100
                   ....*....|....*....|....*..
gi 1373650796  476 YQGtlNRKSVKTTLKVAN-SLANLKKK 501
Cdd:TIGR02168  307 LRE--RLANLERQLEELEaQLEELESK 331
 
Name Accession Description Interval E-value
WcaK COG2327
Polysaccharide pyruvyl transferase family protein WcaK (colanic acid biosynthesis) [Cell wall ...
19-337 1.68e-16

Polysaccharide pyruvyl transferase family protein WcaK (colanic acid biosynthesis) [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 441900 [Multi-domain]  Cd Length: 357  Bit Score: 80.87  E-value: 1.68e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373650796  19 GFNN-GNLAYQYSIYRAL--WNDDVEIHAdgLSSNPNLAEKIN-----------------ENYDLYVMP----LADAFRD 74
Cdd:COG2327    10 GFGNlGDEALLEALLQLLrkRLPDAEITV--LSGNPEETRKRYgvravprrnfleilralRRADLVISGggglLQDVTSL 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373650796  75 DFRPVLRNYTQLIRKLKIPVIVTGVGlranYEPQLDEGFSFdedvtnFVKAVLEKSAQIGVRGQITADYLKKLGFNAElD 154
Cdd:COG2327    88 RSLLYYLGLVLLAKLLGKPVVIYGQG----IGPFKSPLSRR------LLRRVLNRADLISVRDEASAELLKDLGVKKP-P 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373650796 155 FRVIGCPslyTFGREIKLRDFHL-TDQSTIAINASPTSS------EIAINFLNNMITTYK-DYHFIPQHLDEFH-LMYAG 225
Cdd:COG2327   157 IELTPDP---AFLLPPEPVDKEApLERPVVGVNLRPWRGleedylEALAAALDRLIERTGyKVVLLPHQYGQEDdLAIAE 233
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373650796 226 gpDISSDINGYPTNIQHKYyqegrvkyftSMPSWFDFVKKVDFSIGSRLHGNVIPTIVGTPNISFVQDARMRELASYHAL 305
Cdd:COG2327   234 --ELAAKLKERVVVLDEEL----------DPDELLSLIARADLVIGMRLHALIFALSAGVPVIALSYDPKVRGLMEDLGL 301
                         330       340       350
                  ....*....|....*....|....*....|..
gi 1373650796 306 PHVTIDelEKTNNLQELLTKVDLKSAEKVQAR 337
Cdd:COG2327   302 PDYVLD--LDDLDPEELLAAVEELLANREELR 331
PS_pyruv_trans pfam04230
Polysaccharide pyruvyl transferase; Pyruvyl-transferases involved in peptidoglycan-associated ...
86-293 8.11e-09

Polysaccharide pyruvyl transferase; Pyruvyl-transferases involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora.


Pssm-ID: 427804  Cd Length: 233  Bit Score: 56.10  E-value: 8.11e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373650796  86 LIRKLKIPVIVTGVGLranyepqldeGFSFDEDVTNFVKAVLEKSAQIGVRGQITADYLKKLGFNAELdfRVIGCPSLYt 165
Cdd:pfam04230  87 VAKKLGKPVILLGQGI----------GPFLNEALRKLLKKILSKADLISVRDELSYELLEKLGIKENV--ELVPDPAFL- 153
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373650796 166 FGREIKLRDFHLTDQSTIAINASPTSSEIAINflnnmittyKDYHFIPQHLDEfhlmyaggpdissdingyptniqhkyy 245
Cdd:pfam04230 154 LDKLPPKEIKKKPKKDYISIAKSSKKDLEDLN---------EKLALLYDLPEE--------------------------- 197
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1373650796 246 qegrvkyftsmpsWFDFVKKVDFSIGSRLHGNVIPTIVGTPNISFVQD 293
Cdd:pfam04230 198 -------------LLSLISQADFVITTRLHGLILALLFGVPFIVIAYD 232
HOOK pfam05622
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from ...
389-501 3.04e-04

HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organizms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas this central coiled-coil motif mediates homodimerization and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localized to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. This entry includes the central coiled-coiled domain and the divergent C-terminal domain.


Pssm-ID: 461694 [Multi-domain]  Cd Length: 528  Bit Score: 43.14  E-value: 3.04e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373650796 389 EMLNRVKISTNLLKERHDFSTRYRVNLVNNQLTQLKKTTSE---QNKKYQQKITETQEKNQQLEKQLTD----------T 455
Cdd:pfam05622 282 EKLIRLQHENKMLRLGQEGSYRERLTELQQLLEDANRRKNEletQNRLANQRILELQQQVEELQKALQEqgskaedsslL 361
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1373650796 456 KQKLQLTINKNHELTNKIRHYQGTL----NRKSVKTTLKVANSLANLKKK 501
Cdd:pfam05622 362 KQKLEEHLEKLHEAQSELQKKKEQIeelePKQDSNLAQKIDELQEALRKK 411
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
396-501 7.61e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 39.27  E-value: 7.61e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373650796  396 ISTNLLKERHDfsTRYRVNLVNNQLTQLKKTTSEQNKKYQQKITETQEKNQQLEKQLTDTKQKLQLTINKNHELTNKIRH 475
Cdd:TIGR02168  229 LLVLRLEELRE--ELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQI 306
                           90       100
                   ....*....|....*....|....*..
gi 1373650796  476 YQGtlNRKSVKTTLKVAN-SLANLKKK 501
Cdd:TIGR02168  307 LRE--RLANLERQLEELEaQLEELESK 331
Tropomyosin_1 pfam12718
Tropomyosin like; This family is a set of eukaryotic tropomyosins. Within the yeast Tpm1 and ...
419-474 9.24e-03

Tropomyosin like; This family is a set of eukaryotic tropomyosins. Within the yeast Tpm1 and Tpm2, biochemical and sequence analyses indicate that Tpm2p spans four actin monomers along a filament, whereas Tpm1p spans five. Despite its shorter length, Tpm2p can compete with Tpm1p for binding to F-actin. Over-expression of Tpm2p in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1p. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis. The family also contains higher eukaryote Tpm3 members.


Pssm-ID: 403808 [Multi-domain]  Cd Length: 142  Bit Score: 36.90  E-value: 9.24e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1373650796 419 QLTQLKKTTSEQNKKYQQKITETQEKNQQLE-------KQLTDTKQKLQLTINK---NHELTNKIR 474
Cdd:pfam12718  18 ELEEKVKELEQENLEKEQEIKSLTHKNQQLEeevekleEQLKEAKEKAEESEKLktnNENLTRKIQ 83
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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