|
Name |
Accession |
Description |
Interval |
E-value |
| NACHT |
COG5635 |
Predicted NTPase, NACHT family domain [Signal transduction mechanisms]; |
490-1121 |
6.06e-53 |
|
Predicted NTPase, NACHT family domain [Signal transduction mechanisms];
Pssm-ID: 444362 [Multi-domain] Cd Length: 935 Bit Score: 202.73 E-value: 6.06e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 490 RLLEGGKHNAVILGEPGAGKTTYLQKCGWWLHE---YTQDPV-IWISLKQVSDIETyvLEKWLPEVLKvsKVEESHRKQL 565
Cdd:COG5635 174 ELLEAKKKRLLILGEPGSGKTTLLRYLALELAErylDAEDPIpILIELRDLAEEAS--LEDLLAEALE--KRGGEPEDAL 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 566 EKLFRQERVWLLLDGVDEMSVSKG--SPLSAIAQLPAWLKQARVILTCRRNLWETSFSNQlgnqFDCYWTLEFRSEQITE 643
Cdd:COG5635 250 ERLLRNGRLLLLLDGLDEVPDEADrdEVLNQLRRFLERYPKARVIITSRPEGYDSSELEG----FEVLELAPLSDEQIEE 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 644 FIEYYFTDTPQKGNALKNALteQGKERLRDLVKNPLRLRVLCEIWKNGkqtGTLPETQAQLFQSYVEYFYRLHQEQKEID 723
Cdd:COG5635 326 FLKKWFEATERKAERLLEAL--EENPELRELARNPLLLTLLALLLRER---GELPDTRAELYEQFVELLLERWDEQRGLT 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 724 LTQQ-KRKQLNRKLEELAREGMERDRdhFCFTESEVTAQLEE--------DEFLIA-TQKLGWLTpigktdHPEENVYAF 793
Cdd:COG5635 401 IYRElSREELRELLSELALAMQENGR--TEFAREELEEILREylgrrkdaEALLDElLLRTGLLV------ERGEGRYSF 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 794 WHPTFQEYFAACAINDWDFFLPRQHINRpisgkqyRIFENKWQQVYLLWLGRKEKslESQKDQSLQALVRFESGIECEID 873
Cdd:COG5635 473 AHRSFQEYLAARALVEELDEELLELLAE-------HLEDPRWREVLLLLAGLLDD--VKQIKELIDALLARDDAAALALA 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 874 FYQLRGSLLALMALEEFKDCSIKTTIINDISNYLTDNSQVLLRGKIVEALRAIRSEEAAILLIMAMKHEDKNVREKASEA 953
Cdd:COG5635 544 AALLLALLLALALLALLALLLLLRLLLALLALLLLALLLLLLLALLLALLALDLGLAALLLLLLLLLLLLLLLALALLLA 623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 954 LEKKGSEEEFSPLIIALKDENKDVRKRAVIALEKIGGEKVVQPLIIALKDEDKYVRRRAVFALERIRSEKAVQSLTLALK 1033
Cdd:COG5635 624 LLLLLLLLLLAELLLLALLALVLLSLLLASRLLLITLLLLAAASAALLLLLLLLLAELLLALLALASLLLLLLLALALAL 703
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1034 DEDKYVRQRAVIALEKIGSEKVVQPLIIALKDEDKYVRRRAVFALGNIGGKEAVQPLIVALKDEDKDVRKKAAEALGKIG 1113
Cdd:COG5635 704 ALLLLAVLLAAALDLLLLLVLLLALLLVLALALSLLLLALALLLAGALLLESSALLAVLLASLLLALLLLSLLLLLVLLL 783
|
....*...
gi 1371146644 1114 SEEAVQSL 1121
Cdd:COG5635 784 ALALLASL 791
|
|
| HEAT |
COG1413 |
HEAT repeat [General function prediction only]; |
1397-1535 |
2.03e-41 |
|
HEAT repeat [General function prediction only];
Pssm-ID: 441023 [Multi-domain] Cd Length: 137 Bit Score: 149.01 E-value: 2.03e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1397 VRYLAVEALGYIRSEEAVKPLVLALSDKSNLVRESAVEALGYIRSEEAVNSLILVLKDENAdrEVRESAARALGKIRNEE 1476
Cdd:COG1413 1 VRRAAARALGRLGDPAAVPALIAALADEDPDVRAAAARALGRLGDPRAVPALLEALKDPDP--EVRAAAAEALGRIGDPE 78
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 1371146644 1477 AVQPLILALEDEDKDMRIAVTEALGEIKTEEAVNPLILVLNDNNEEVRERAVFALEKIG 1535
Cdd:COG1413 79 AVPALIAALKDEDPEVRRAAAEALGRLGDPAAVPALLEALKDPDWEVRRAAARALGRLG 137
|
|
| HEAT |
COG1413 |
HEAT repeat [General function prediction only]; |
1211-1347 |
9.23e-41 |
|
HEAT repeat [General function prediction only];
Pssm-ID: 441023 [Multi-domain] Cd Length: 137 Bit Score: 147.08 E-value: 9.23e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1211 VRKTAAETLGHIENKEAFHLLIVALKDENKEVRSSAAEALGHIGSGEAVQPLTLALKDEDKDVRKSAAEALGEIRSEEVV 1290
Cdd:COG1413 1 VRRAAARALGRLGDPAAVPALIAALADEDPDVRAAAARALGRLGDPRAVPALLEALKDPDPEVRAAAAEALGRIGDPEAV 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1371146644 1291 HPLILALKDEDKDVRERAVFTLGGIRSKEAVQPLTLASKDEDKHVRERAVFALGEIR 1347
Cdd:COG1413 81 PALIAALKDEDPEVRRAAAEALGRLGDPAAVPALLEALKDPDWEVRRAAARALGRLG 137
|
|
| COG4249 |
COG4249 |
Uncharacterized conserved protein, contains caspase domain [General function prediction only]; |
11-194 |
2.01e-32 |
|
Uncharacterized conserved protein, contains caspase domain [General function prediction only];
Pssm-ID: 443391 Cd Length: 238 Bit Score: 126.98 E-value: 2.01e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 11 QKPKTWYFLIGVN-YSpgcGLSELKYSARDCQTLEKIFRDEIkpvpseseF---LVFHDddssslPTRDKILETWKHI-- 84
Cdd:COG4249 6 AAEKRVALVIGNSaYQ---DLPPLPNAVNDAEALAEALREAG--------FdevILLTD------ATRAEIRRALRDFfa 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 85 QVQSNDTVIFYFSGHGKLDEkDRTVLCLRDTDATQLADTGLVLQNWLDQLANFNCKHKIALIDACHSGNV---------- 154
Cdd:COG4249 69 KAQPGDVALFYFAGHGIQDD-GENYLLPVDASPDDLESTAISLSELLDALAESPAKKVLVILDACRSGPFarggrrsagp 147
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1371146644 155 -------ELPSKNGYVALLSCQPEQQFFQYSHIGNSIFSYYLIRGLR 194
Cdd:COG4249 148 sssrglaELAAGRGTLVLTASAPGQVALEGPEGGHGVFTYALLEGLR 194
|
|
| PRK13800 |
PRK13800 |
fumarate reductase/succinate dehydrogenase flavoprotein subunit; |
1185-1500 |
1.42e-19 |
|
fumarate reductase/succinate dehydrogenase flavoprotein subunit;
Pssm-ID: 237512 [Multi-domain] Cd Length: 897 Bit Score: 95.69 E-value: 1.42e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1185 IIALEkirsEEAVQSLTLALNYEDKNVRKTAAETLGHIENKEAFHLLIVALKDENKEVRSSAAEALghigsGEAVQPLTl 1264
Cdd:PRK13800 615 VLALD----APSVAELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGL-----RELVEVLP- 684
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1265 alkdedkdvrksAAEALGEirseevvhplilALKDEDKDVRERAVFTLGGIRSKEAVQpLTLASKDEDKHVRERAVFALg 1344
Cdd:PRK13800 685 ------------PAPALRD------------HLGSPDPVVRAAALDVLRALRAGDAAL-FAAALGDPDHRVRIEAVRAL- 738
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1345 eiRSEEVVKPLTLALKDEDKDVRKKAVFALEEIRSEEAVS-PLILVL-KDENYTVRYLAVEALGYIR-SEEAVKPLVLAL 1421
Cdd:PRK13800 739 --VSVDDVESVAGAATDENREVRIAVAKGLATLGAGGAPAgDAVRALtGDPDPLVRAAALAALAELGcPPDDVAAATAAL 816
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1422 SDKSNLVRESAVEALGYIRSEEAVNSLILVLKDENADreVRESAARALGKIRNEEAVQ-PLILALEDEDKDMRIAVTEAL 1500
Cdd:PRK13800 817 RASAWQVRQGAARALAGAAADVAVPALVEALTDPHLD--VRKAAVLALTRWPGDPAARdALTTALTDSDADVRAYARRAL 894
|
|
| HEAT_2 |
pfam13646 |
HEAT repeats; This family includes multiple HEAT repeats. |
994-1079 |
8.25e-18 |
|
HEAT repeats; This family includes multiple HEAT repeats.
Pssm-ID: 433376 [Multi-domain] Cd Length: 88 Bit Score: 79.69 E-value: 8.25e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 994 VQPLIIAL-KDEDKYVRRRAVFALERIRSEKAVQSLTLALKDEDKYVRQRAVIALEKIGSEKVVQPLIIALK-DEDKYVR 1071
Cdd:pfam13646 1 LPALLQALlRDPDPEVRAAAIRALGRIGDPEAVPALLELLKDEDPAVRRAAAEALGKIGDPEALPALLELLRdDDDDVVR 80
|
....*...
gi 1371146644 1072 RRAVFALG 1079
Cdd:pfam13646 81 AAAAEALA 88
|
|
| HEAT_2 |
pfam13646 |
HEAT repeats; This family includes multiple HEAT repeats. |
1352-1437 |
5.84e-17 |
|
HEAT repeats; This family includes multiple HEAT repeats.
Pssm-ID: 433376 [Multi-domain] Cd Length: 88 Bit Score: 77.38 E-value: 5.84e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1352 VKPLTLAL-KDEDKDVRKKAVFALEEIRSEEAVSPLILVLKDENYTVRYLAVEALGYIRSEEAVKPLV-LALSDKSNLVR 1429
Cdd:pfam13646 1 LPALLQALlRDPDPEVRAAAIRALGRIGDPEAVPALLELLKDEDPAVRRAAAEALGKIGDPEALPALLeLLRDDDDDVVR 80
|
....*...
gi 1371146644 1430 ESAVEALG 1437
Cdd:pfam13646 81 AAAAEALA 88
|
|
| HEAT_2 |
pfam13646 |
HEAT repeats; This family includes multiple HEAT repeats. |
1229-1313 |
8.79e-17 |
|
HEAT repeats; This family includes multiple HEAT repeats.
Pssm-ID: 433376 [Multi-domain] Cd Length: 88 Bit Score: 76.99 E-value: 8.79e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1229 HLLIVALKDENKEVRSSAAEALGHIGSGEAVQPLTLALKDEDKDVRKSAAEALGEIRSEEVVHPLI-LALKDEDKDVRER 1307
Cdd:pfam13646 3 ALLQALLRDPDPEVRAAAIRALGRIGDPEAVPALLELLKDEDPAVRRAAAEALGKIGDPEALPALLeLLRDDDDDVVRAA 82
|
....*.
gi 1371146644 1308 AVFTLG 1313
Cdd:pfam13646 83 AAEALA 88
|
|
| HEAT_2 |
pfam13646 |
HEAT repeats; This family includes multiple HEAT repeats. |
1445-1532 |
1.17e-16 |
|
HEAT repeats; This family includes multiple HEAT repeats.
Pssm-ID: 433376 [Multi-domain] Cd Length: 88 Bit Score: 76.61 E-value: 1.17e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1445 VNSLILVLKDEnADREVRESAARALGKIRNEEAVQPLILALEDEDKDMRIAVTEALGEIKTEEAVNPLI-LVLNDNNEEV 1523
Cdd:pfam13646 1 LPALLQALLRD-PDPEVRAAAIRALGRIGDPEAVPALLELLKDEDPAVRRAAAEALGKIGDPEALPALLeLLRDDDDDVV 79
|
....*....
gi 1371146644 1524 RERAVFALE 1532
Cdd:pfam13646 80 RAAAAEALA 88
|
|
| PRK09687 |
PRK09687 |
putative lyase; Provisional |
1351-1533 |
1.14e-15 |
|
putative lyase; Provisional
Pssm-ID: 170047 [Multi-domain] Cd Length: 280 Bit Score: 79.40 E-value: 1.14e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1351 VVKPLTLALKDEDKDVRKKAVFALEeIRSEEAVSPLILVL-KDENYTVRYLAVEALGYI----RSEEAVKPLVLALS--D 1423
Cdd:PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQ-LRGGQDVFRLAIELcSSKNPIERDIGADILSQLgmakRCQDNVFNILNNLAleD 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1424 KSNLVRESAVEALGY------IRSEEAVNSLILVLKDENADreVRESAARALGKIRNEEAVQPLILALEDEDKDMRIAVT 1497
Cdd:PRK09687 103 KSACVRASAINATGHrckknpLYSPKIVEQSQITAFDKSTN--VRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAA 180
|
170 180 190
....*....|....*....|....*....|....*...
gi 1371146644 1498 EALG--EIKTEEAVNPLILVLNDNNEEVRERAVFALEK 1533
Cdd:PRK09687 181 FALNsnKYDNPDIREAFVAMLQDKNEEIRIEAIIGLAL 218
|
|
| HEAT_2 |
pfam13646 |
HEAT repeats; This family includes multiple HEAT repeats. |
1602-1683 |
2.83e-13 |
|
HEAT repeats; This family includes multiple HEAT repeats.
Pssm-ID: 433376 [Multi-domain] Cd Length: 88 Bit Score: 66.98 E-value: 2.83e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1602 LILFLKEEDNMLRQTAADGLGRTRSEEAVRPLILALKDEDNLVRESAAEALESIGSEGAVKPLL-LALKDKKEGVRARAA 1680
Cdd:pfam13646 5 LQALLRDPDPEVRAAAIRALGRIGDPEAVPALLELLKDEDPAVRRAAAEALGKIGDPEALPALLeLLRDDDDDVVRAAAA 84
|
...
gi 1371146644 1681 SAL 1683
Cdd:pfam13646 85 EAL 87
|
|
| PRK09687 |
PRK09687 |
putative lyase; Provisional |
1171-1391 |
4.73e-12 |
|
putative lyase; Provisional
Pssm-ID: 170047 [Multi-domain] Cd Length: 280 Bit Score: 68.62 E-value: 4.73e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1171 NIQRLKIKEVVKCLiialeKIRSEEAVqsLTLALNY---EDKNVRKTAAETLGHI-----ENKEAFHLLI-VALKDENKE 1241
Cdd:PRK09687 34 DHNSLKRISSIRVL-----QLRGGQDV--FRLAIELcssKNPIERDIGADILSQLgmakrCQDNVFNILNnLALEDKSAC 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1242 VRSSAAEALGHIGSG------EAVQPLTLALKDEDKDVRKSAAEALGEIRSEEVVHPLILALKDEDKDVRERAVFTLGGI 1315
Cdd:PRK09687 107 VRASAINATGHRCKKnplyspKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSN 186
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1371146644 1316 R--SKEAVQPLTLASKDEDKHVRERAVFALGEIRSEEVVKPLTLALKDEDKDVrkKAVFALEEIRSEEAVSPLILVLK 1391
Cdd:PRK09687 187 KydNPDIREAFVAMLQDKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGTVGD--LIIEAAGELGDKTLLPVLDTLLY 262
|
|
| Peptidase_C14 |
pfam00656 |
Caspase domain; |
19-209 |
3.66e-10 |
|
Caspase domain;
Pssm-ID: 425803 Cd Length: 213 Bit Score: 61.57 E-value: 3.66e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 19 LIGVNYSPGcGLSELKYSARDCQTLEKIFRD---EIKpvpseseflVFHDDDSSSLptRDKILETWKHIQVQSND---TV 92
Cdd:pfam00656 6 IIGNNNYPG-TKAPLRGCDNDAEALAKTLKSlgfEVR---------VFEDLTAEEI--RRALRDFAARADHSDGDsfvVV 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 93 IFYFSGHGklDEKDRTVLCLRDTDATQL-ADTGLV-LQNWLDQLANfncKHKIALIDACHSGNVELP-SKNGYVALLSCQ 169
Cdd:pfam00656 74 LLYYSGHG--EQVPGGDIYGTDEYLVPVdALTNLFtGDDCLPSLVG---KPKLFIIDACRGNLEDGGvVEADFLVAYSTA 148
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1371146644 170 PEqqffQYSH---IGNSIFSYYLIRGLREvlsdfPDPDLSVGS 209
Cdd:pfam00656 149 PG----QVSWrntGSGSWFIQALCQVLRE-----YGHGLDLLS 182
|
|
| EZ_HEAT |
smart00567 |
E-Z type HEAT repeats; Present in subunits of cyanobacterial phycocyanin lyase, and other ... |
1069-1097 |
2.59e-07 |
|
E-Z type HEAT repeats; Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Pssm-ID: 128837 [Multi-domain] Cd Length: 30 Bit Score: 48.18 E-value: 2.59e-07
10 20
....*....|....*....|....*....
gi 1371146644 1069 YVRRRAVFALGNIGGKEAVQPLIVALKDE 1097
Cdd:smart00567 2 LVRHEAAFALGQLGDEEAVPALIKALEDE 30
|
|
| HEAT |
COG1413 |
HEAT repeat [General function prediction only]; |
1644-1693 |
7.38e-07 |
|
HEAT repeat [General function prediction only];
Pssm-ID: 441023 [Multi-domain] Cd Length: 137 Bit Score: 50.01 E-value: 7.38e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1644 VRESAAEALESIGSEGAVKPLLLALKDKKEGVRARAASALWHIAKTTSYP 1693
Cdd:COG1413 1 VRRAAARALGRLGDPAAVPALIAALADEDPDVRAAAARALGRLGDPRAVP 50
|
|
| EZ_HEAT |
smart00567 |
E-Z type HEAT repeats; Present in subunits of cyanobacterial phycocyanin lyase, and other ... |
1461-1488 |
6.69e-06 |
|
E-Z type HEAT repeats; Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Pssm-ID: 128837 [Multi-domain] Cd Length: 30 Bit Score: 44.33 E-value: 6.69e-06
10 20
....*....|....*....|....*...
gi 1371146644 1461 VRESAARALGKIRNEEAVQPLILALEDE 1488
Cdd:smart00567 3 VRHEAAFALGQLGDEEAVPALIKALEDE 30
|
|
| EZ_HEAT |
smart00567 |
E-Z type HEAT repeats; Present in subunits of cyanobacterial phycocyanin lyase, and other ... |
1242-1269 |
3.19e-04 |
|
E-Z type HEAT repeats; Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Pssm-ID: 128837 [Multi-domain] Cd Length: 30 Bit Score: 39.32 E-value: 3.19e-04
10 20
....*....|....*....|....*...
gi 1371146644 1242 VRSSAAEALGHIGSGEAVQPLTLALKDE 1269
Cdd:smart00567 3 VRHEAAFALGQLGDEEAVPALIKALEDE 30
|
|
| EZ_HEAT |
smart00567 |
E-Z type HEAT repeats; Present in subunits of cyanobacterial phycocyanin lyase, and other ... |
1366-1393 |
3.06e-03 |
|
E-Z type HEAT repeats; Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Pssm-ID: 128837 [Multi-domain] Cd Length: 30 Bit Score: 36.62 E-value: 3.06e-03
10 20
....*....|....*....|....*...
gi 1371146644 1366 VRKKAVFALEEIRSEEAVSPLILVLKDE 1393
Cdd:smart00567 3 VRHEAAFALGQLGDEEAVPALIKALEDE 30
|
|
| RPN2 |
COG5116 |
26S proteasome regulatory complex component [Posttranslational modification, protein turnover, ... |
1330-1439 |
4.10e-03 |
|
26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 227446 [Multi-domain] Cd Length: 926 Bit Score: 41.86 E-value: 4.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1330 DEDKHVRERAVFAL-----GEIRSEEVVKPLTLALKDEDKDVRKKAVFALEEIRSEE---AVSPLILVLKDENYTVRYLA 1401
Cdd:COG5116 527 DKDSILRYNGVFSLalayvGTGNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDrdlLVGTVELLSESHNFHVRAGV 606
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1371146644 1402 VEALGYIRSEEAVKPLVLALS----DKSNLVRESAVEALGYI 1439
Cdd:COG5116 607 AVALGIACAGTGDKVATDILEalmyDTNDFVRQSAMIAVGMI 648
|
|
| CdiI_Ct-like |
cd20694 |
inhibitor (or immunity protein) of the contact-dependent growth inhibition (CDI) system of ... |
1227-1285 |
5.76e-03 |
|
inhibitor (or immunity protein) of the contact-dependent growth inhibition (CDI) system of Cupriavidus taiwanensis CdiI immunity protein and similar proteins; CDI toxins are expressed by gram-negative bacteria as part of a mechanism to inhibit the growth of neighboring cells. This model represents the inhibitor (CdiI, also called CdiI immunity protein) of the CdiA effector protein from Cupriavidus taiwanensis, and similar proteins. CdiA secretion is dependent on the outer membrane protein CdiB. Upon binding to a receptor on the surface of target bacteria, the CDI toxin is delivered via its C-terminal domain (CdiA-CT). The CdiI immunity proteins are intracellular proteins that inactivate the toxin/effector protein to prevent auto-inhibition. They are specific for their cognate CdiA-CT and do not protect cells from the toxins of other CDI+ bacteria. Thus, CDI systems encode a complex network of toxin-immunity protein pairs that are deployed for intercellular competition. This C. taiwanensis CdiI is alpha-helical and binds its cognate toxin CdiA-CT domain with high affinity.
Pssm-ID: 412048 [Multi-domain] Cd Length: 96 Bit Score: 37.92 E-value: 5.76e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1371146644 1227 AFHLLIVALKDENKEVRSSAAEALGHIG------SGEAVQPLTLALKDEDKDVRKSAAEALGEIR 1285
Cdd:cd20694 30 VQDICLRLLEHPDPDVRGLAITCLGHLArihgklDKDRVLPALEALLSDPPDVRGRAEDALDDIE 94
|
|
| EZ_HEAT |
smart00567 |
E-Z type HEAT repeats; Present in subunits of cyanobacterial phycocyanin lyase, and other ... |
1643-1670 |
7.41e-03 |
|
E-Z type HEAT repeats; Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Pssm-ID: 128837 [Multi-domain] Cd Length: 30 Bit Score: 35.47 E-value: 7.41e-03
10 20
....*....|....*....|....*...
gi 1371146644 1643 LVRESAAEALESIGSEGAVKPLLLALKD 1670
Cdd:smart00567 2 LVRHEAAFALGQLGDEEAVPALIKALED 29
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| NACHT |
COG5635 |
Predicted NTPase, NACHT family domain [Signal transduction mechanisms]; |
490-1121 |
6.06e-53 |
|
Predicted NTPase, NACHT family domain [Signal transduction mechanisms];
Pssm-ID: 444362 [Multi-domain] Cd Length: 935 Bit Score: 202.73 E-value: 6.06e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 490 RLLEGGKHNAVILGEPGAGKTTYLQKCGWWLHE---YTQDPV-IWISLKQVSDIETyvLEKWLPEVLKvsKVEESHRKQL 565
Cdd:COG5635 174 ELLEAKKKRLLILGEPGSGKTTLLRYLALELAErylDAEDPIpILIELRDLAEEAS--LEDLLAEALE--KRGGEPEDAL 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 566 EKLFRQERVWLLLDGVDEMSVSKG--SPLSAIAQLPAWLKQARVILTCRRNLWETSFSNQlgnqFDCYWTLEFRSEQITE 643
Cdd:COG5635 250 ERLLRNGRLLLLLDGLDEVPDEADrdEVLNQLRRFLERYPKARVIITSRPEGYDSSELEG----FEVLELAPLSDEQIEE 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 644 FIEYYFTDTPQKGNALKNALteQGKERLRDLVKNPLRLRVLCEIWKNGkqtGTLPETQAQLFQSYVEYFYRLHQEQKEID 723
Cdd:COG5635 326 FLKKWFEATERKAERLLEAL--EENPELRELARNPLLLTLLALLLRER---GELPDTRAELYEQFVELLLERWDEQRGLT 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 724 LTQQ-KRKQLNRKLEELAREGMERDRdhFCFTESEVTAQLEE--------DEFLIA-TQKLGWLTpigktdHPEENVYAF 793
Cdd:COG5635 401 IYRElSREELRELLSELALAMQENGR--TEFAREELEEILREylgrrkdaEALLDElLLRTGLLV------ERGEGRYSF 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 794 WHPTFQEYFAACAINDWDFFLPRQHINRpisgkqyRIFENKWQQVYLLWLGRKEKslESQKDQSLQALVRFESGIECEID 873
Cdd:COG5635 473 AHRSFQEYLAARALVEELDEELLELLAE-------HLEDPRWREVLLLLAGLLDD--VKQIKELIDALLARDDAAALALA 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 874 FYQLRGSLLALMALEEFKDCSIKTTIINDISNYLTDNSQVLLRGKIVEALRAIRSEEAAILLIMAMKHEDKNVREKASEA 953
Cdd:COG5635 544 AALLLALLLALALLALLALLLLLRLLLALLALLLLALLLLLLLALLLALLALDLGLAALLLLLLLLLLLLLLLALALLLA 623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 954 LEKKGSEEEFSPLIIALKDENKDVRKRAVIALEKIGGEKVVQPLIIALKDEDKYVRRRAVFALERIRSEKAVQSLTLALK 1033
Cdd:COG5635 624 LLLLLLLLLLAELLLLALLALVLLSLLLASRLLLITLLLLAAASAALLLLLLLLLAELLLALLALASLLLLLLLALALAL 703
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1034 DEDKYVRQRAVIALEKIGSEKVVQPLIIALKDEDKYVRRRAVFALGNIGGKEAVQPLIVALKDEDKDVRKKAAEALGKIG 1113
Cdd:COG5635 704 ALLLLAVLLAAALDLLLLLVLLLALLLVLALALSLLLLALALLLAGALLLESSALLAVLLASLLLALLLLSLLLLLVLLL 783
|
....*...
gi 1371146644 1114 SEEAVQSL 1121
Cdd:COG5635 784 ALALLASL 791
|
|
| HEAT |
COG1413 |
HEAT repeat [General function prediction only]; |
977-1113 |
5.44e-42 |
|
HEAT repeat [General function prediction only];
Pssm-ID: 441023 [Multi-domain] Cd Length: 137 Bit Score: 150.55 E-value: 5.44e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 977 VRKRAVIALEKIGGEKVVQPLIIALKDEDKYVRRRAVFALERIRSEKAVQSLTLALKDEDKYVRQRAVIALEKIGSEKVV 1056
Cdd:COG1413 1 VRRAAARALGRLGDPAAVPALIAALADEDPDVRAAAARALGRLGDPRAVPALLEALKDPDPEVRAAAAEALGRIGDPEAV 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1371146644 1057 QPLIIALKDEDKYVRRRAVFALGNIGGKEAVQPLIVALKDEDKDVRKKAAEALGKIG 1113
Cdd:COG1413 81 PALIAALKDEDPEVRRAAAEALGRLGDPAAVPALLEALKDPDWEVRRAAARALGRLG 137
|
|
| HEAT |
COG1413 |
HEAT repeat [General function prediction only]; |
1397-1535 |
2.03e-41 |
|
HEAT repeat [General function prediction only];
Pssm-ID: 441023 [Multi-domain] Cd Length: 137 Bit Score: 149.01 E-value: 2.03e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1397 VRYLAVEALGYIRSEEAVKPLVLALSDKSNLVRESAVEALGYIRSEEAVNSLILVLKDENAdrEVRESAARALGKIRNEE 1476
Cdd:COG1413 1 VRRAAARALGRLGDPAAVPALIAALADEDPDVRAAAARALGRLGDPRAVPALLEALKDPDP--EVRAAAAEALGRIGDPE 78
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 1371146644 1477 AVQPLILALEDEDKDMRIAVTEALGEIKTEEAVNPLILVLNDNNEEVRERAVFALEKIG 1535
Cdd:COG1413 79 AVPALIAALKDEDPEVRRAAAEALGRLGDPAAVPALLEALKDPDWEVRRAAARALGRLG 137
|
|
| HEAT |
COG1413 |
HEAT repeat [General function prediction only]; |
1211-1347 |
9.23e-41 |
|
HEAT repeat [General function prediction only];
Pssm-ID: 441023 [Multi-domain] Cd Length: 137 Bit Score: 147.08 E-value: 9.23e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1211 VRKTAAETLGHIENKEAFHLLIVALKDENKEVRSSAAEALGHIGSGEAVQPLTLALKDEDKDVRKSAAEALGEIRSEEVV 1290
Cdd:COG1413 1 VRRAAARALGRLGDPAAVPALIAALADEDPDVRAAAARALGRLGDPRAVPALLEALKDPDPEVRAAAAEALGRIGDPEAV 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1371146644 1291 HPLILALKDEDKDVRERAVFTLGGIRSKEAVQPLTLASKDEDKHVRERAVFALGEIR 1347
Cdd:COG1413 81 PALIAALKDEDPEVRRAAAEALGRLGDPAAVPALLEALKDPDWEVRRAAARALGRLG 137
|
|
| HEAT |
COG1413 |
HEAT repeat [General function prediction only]; |
1335-1473 |
2.87e-40 |
|
HEAT repeat [General function prediction only];
Pssm-ID: 441023 [Multi-domain] Cd Length: 137 Bit Score: 145.93 E-value: 2.87e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1335 VRERAVFALGEIRSEEVVKPLTLALKDEDKDVRKKAVFALEEIRSEEAVSPLILVLKDENYTVRYLAVEALGYIRSEEAV 1414
Cdd:COG1413 1 VRRAAARALGRLGDPAAVPALIAALADEDPDVRAAAARALGRLGDPRAVPALLEALKDPDPEVRAAAAEALGRIGDPEAV 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 1371146644 1415 KPLVLALSDKSNLVRESAVEALGYIRSEEAVNSLILVLKDEnaDREVRESAARALGKIR 1473
Cdd:COG1413 81 PALIAALKDEDPEVRRAAAEALGRLGDPAAVPALLEALKDP--DWEVRRAAARALGRLG 137
|
|
| HEAT |
COG1413 |
HEAT repeat [General function prediction only]; |
1008-1144 |
3.51e-40 |
|
HEAT repeat [General function prediction only];
Pssm-ID: 441023 [Multi-domain] Cd Length: 137 Bit Score: 145.54 E-value: 3.51e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1008 VRRRAVFALERIRSEKAVQSLTLALKDEDKYVRQRAVIALEKIGSEKVVQPLIIALKDEDKYVRRRAVFALGNIGGKEAV 1087
Cdd:COG1413 1 VRRAAARALGRLGDPAAVPALIAALADEDPDVRAAAARALGRLGDPRAVPALLEALKDPDPEVRAAAAEALGRIGDPEAV 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1371146644 1088 QPLIVALKDEDKDVRKKAAEALGKIGSEEAVQSLIFAFKNQGMELQKKAAEALGKIG 1144
Cdd:COG1413 81 PALIAALKDEDPEVRRAAAEALGRLGDPAAVPALLEALKDPDWEVRRAAARALGRLG 137
|
|
| HEAT |
COG1413 |
HEAT repeat [General function prediction only]; |
1242-1378 |
4.03e-40 |
|
HEAT repeat [General function prediction only];
Pssm-ID: 441023 [Multi-domain] Cd Length: 137 Bit Score: 145.16 E-value: 4.03e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1242 VRSSAAEALGHIGSGEAVQPLTLALKDEDKDVRKSAAEALGEIRSEEVVHPLILALKDEDKDVRERAVFTLGGIRSKEAV 1321
Cdd:COG1413 1 VRRAAARALGRLGDPAAVPALIAALADEDPDVRAAAARALGRLGDPRAVPALLEALKDPDPEVRAAAAEALGRIGDPEAV 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1371146644 1322 QPLTLASKDEDKHVRERAVFALGEIRSEEVVKPLTLALKDEDKDVRKKAVFALEEIR 1378
Cdd:COG1413 81 PALIAALKDEDPEVRRAAAEALGRLGDPAAVPALLEALKDPDWEVRRAAARALGRLG 137
|
|
| HEAT |
COG1413 |
HEAT repeat [General function prediction only]; |
1273-1409 |
9.63e-40 |
|
HEAT repeat [General function prediction only];
Pssm-ID: 441023 [Multi-domain] Cd Length: 137 Bit Score: 144.39 E-value: 9.63e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1273 VRKSAAEALGEIRSEEVVHPLILALKDEDKDVRERAVFTLGGIRSKEAVQPLTLASKDEDKHVRERAVFALGEIRSEEVV 1352
Cdd:COG1413 1 VRRAAARALGRLGDPAAVPALIAALADEDPDVRAAAARALGRLGDPRAVPALLEALKDPDPEVRAAAAEALGRIGDPEAV 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1371146644 1353 KPLTLALKDEDKDVRKKAVFALEEIRSEEAVSPLILVLKDENYTVRYLAVEALGYIR 1409
Cdd:COG1413 81 PALIAALKDEDPEVRRAAAEALGRLGDPAAVPALLEALKDPDWEVRRAAARALGRLG 137
|
|
| HEAT |
COG1413 |
HEAT repeat [General function prediction only]; |
1304-1440 |
1.17e-37 |
|
HEAT repeat [General function prediction only];
Pssm-ID: 441023 [Multi-domain] Cd Length: 137 Bit Score: 138.22 E-value: 1.17e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1304 VRERAVFTLGGIRSKEAVQPLTLASKDEDKHVRERAVFALGEIRSEEVVKPLTLALKDEDKDVRKKAVFALEEIRSEEAV 1383
Cdd:COG1413 1 VRRAAARALGRLGDPAAVPALIAALADEDPDVRAAAARALGRLGDPRAVPALLEALKDPDPEVRAAAAEALGRIGDPEAV 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1371146644 1384 SPLILVLKDENYTVRYLAVEALGYIRSEEAVKPLVLALSDKSNLVRESAVEALGYIR 1440
Cdd:COG1413 81 PALIAALKDEDPEVRRAAAEALGRLGDPAAVPALLEALKDPDWEVRRAAARALGRLG 137
|
|
| HEAT |
COG1413 |
HEAT repeat [General function prediction only]; |
946-1082 |
3.39e-37 |
|
HEAT repeat [General function prediction only];
Pssm-ID: 441023 [Multi-domain] Cd Length: 137 Bit Score: 137.07 E-value: 3.39e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 946 VREKASEALEKKGSEEEFSPLIIALKDENKDVRKRAVIALEKIGGEKVVQPLIIALKDEDKYVRRRAVFALERIRSEKAV 1025
Cdd:COG1413 1 VRRAAARALGRLGDPAAVPALIAALADEDPDVRAAAARALGRLGDPRAVPALLEALKDPDPEVRAAAAEALGRIGDPEAV 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1371146644 1026 QSLTLALKDEDKYVRQRAVIALEKIGSEKVVQPLIIALKDEDKYVRRRAVFALGNIG 1082
Cdd:COG1413 81 PALIAALKDEDPEVRRAAAEALGRLGDPAAVPALLEALKDPDWEVRRAAARALGRLG 137
|
|
| HEAT |
COG1413 |
HEAT repeat [General function prediction only]; |
1185-1316 |
2.72e-36 |
|
HEAT repeat [General function prediction only];
Pssm-ID: 441023 [Multi-domain] Cd Length: 137 Bit Score: 134.37 E-value: 2.72e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1185 IIALEKIRSEEAVQSLTLALNYEDKNVRKTAAETLGHIENKEAFHLLIVALKDENKEVRSSAAEALGHIGSGEAVQPLTL 1264
Cdd:COG1413 6 ARALGRLGDPAAVPALIAALADEDPDVRAAAARALGRLGDPRAVPALLEALKDPDPEVRAAAAEALGRIGDPEAVPALIA 85
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1371146644 1265 ALKDEDKDVRKSAAEALGEIRSEEVVHPLILALKDEDKDVRERAVFTLGGIR 1316
Cdd:COG1413 86 ALKDEDPEVRRAAAEALGRLGDPAAVPALLEALKDPDWEVRRAAARALGRLG 137
|
|
| HEAT |
COG1413 |
HEAT repeat [General function prediction only]; |
915-1051 |
6.51e-34 |
|
HEAT repeat [General function prediction only];
Pssm-ID: 441023 [Multi-domain] Cd Length: 137 Bit Score: 127.44 E-value: 6.51e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 915 LRGKIVEALRAIRSEEAAILLIMAMKHEDKNVREKASEALEKKGSEEEFSPLIIALKDENKDVRKRAVIALEKIGGEKVV 994
Cdd:COG1413 1 VRRAAARALGRLGDPAAVPALIAALADEDPDVRAAAARALGRLGDPRAVPALLEALKDPDPEVRAAAAEALGRIGDPEAV 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1371146644 995 QPLIIALKDEDKYVRRRAVFALERIRSEKAVQSLTLALKDEDKYVRQRAVIALEKIG 1051
Cdd:COG1413 81 PALIAALKDEDPEVRRAAAEALGRLGDPAAVPALLEALKDPDWEVRRAAARALGRLG 137
|
|
| HEAT |
COG1413 |
HEAT repeat [General function prediction only]; |
1039-1170 |
1.63e-33 |
|
HEAT repeat [General function prediction only];
Pssm-ID: 441023 [Multi-domain] Cd Length: 137 Bit Score: 126.28 E-value: 1.63e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1039 VRQRAVIALEKIGSEKVVQPLIIALKDEDKYVRRRAVFALGNIGGKEAVQPLIVALKDEDKDVRKKAAEALGKIGSEEAV 1118
Cdd:COG1413 1 VRRAAARALGRLGDPAAVPALIAALADEDPDVRAAAARALGRLGDPRAVPALLEALKDPDPEVRAAAAEALGRIGDPEAV 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1371146644 1119 QSLIFAFKNQGMELQKKAAEALGKIGSEEAVQSLIFAVKDQVMELQKKAAVS 1170
Cdd:COG1413 81 PALIAALKDEDPEVRRAAAEALGRLGDPAAVPALLEALKDPDWEVRRAAARA 132
|
|
| COG4249 |
COG4249 |
Uncharacterized conserved protein, contains caspase domain [General function prediction only]; |
11-194 |
2.01e-32 |
|
Uncharacterized conserved protein, contains caspase domain [General function prediction only];
Pssm-ID: 443391 Cd Length: 238 Bit Score: 126.98 E-value: 2.01e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 11 QKPKTWYFLIGVN-YSpgcGLSELKYSARDCQTLEKIFRDEIkpvpseseF---LVFHDddssslPTRDKILETWKHI-- 84
Cdd:COG4249 6 AAEKRVALVIGNSaYQ---DLPPLPNAVNDAEALAEALREAG--------FdevILLTD------ATRAEIRRALRDFfa 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 85 QVQSNDTVIFYFSGHGKLDEkDRTVLCLRDTDATQLADTGLVLQNWLDQLANFNCKHKIALIDACHSGNV---------- 154
Cdd:COG4249 69 KAQPGDVALFYFAGHGIQDD-GENYLLPVDASPDDLESTAISLSELLDALAESPAKKVLVILDACRSGPFarggrrsagp 147
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1371146644 155 -------ELPSKNGYVALLSCQPEQQFFQYSHIGNSIFSYYLIRGLR 194
Cdd:COG4249 148 sssrglaELAAGRGTLVLTASAPGQVALEGPEGGHGVFTYALLEGLR 194
|
|
| HEAT |
COG1413 |
HEAT repeat [General function prediction only]; |
1428-1551 |
4.04e-30 |
|
HEAT repeat [General function prediction only];
Pssm-ID: 441023 [Multi-domain] Cd Length: 137 Bit Score: 116.65 E-value: 4.04e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1428 VRESAVEALGYIRSEEAVNSLILVLKDENADreVRESAARALGKIRNEEAVQPLILALEDEDKDMRIAVTEALGEIKTEE 1507
Cdd:COG1413 1 VRRAAARALGRLGDPAAVPALIAALADEDPD--VRAAAARALGRLGDPRAVPALLEALKDPDPEVRAAAAEALGRIGDPE 78
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1371146644 1508 AVNPLILVLNDNNEEVRERAVFALEKIGSlekmggEEAVQLLEA 1551
Cdd:COG1413 79 AVPALIAALKDEDPEVRRAAAEALGRLGD------PAAVPALLE 116
|
|
| HEAT |
COG1413 |
HEAT repeat [General function prediction only]; |
1461-1687 |
2.45e-27 |
|
HEAT repeat [General function prediction only];
Pssm-ID: 441023 [Multi-domain] Cd Length: 137 Bit Score: 108.95 E-value: 2.45e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1461 VRESAARALGKIRNEEAVQPLILALEDEDKDMRIAVTEALGEIKTEEAVNPLILVLNDNNEEVRERAVFALEKIGSlekm 1540
Cdd:COG1413 1 VRRAAARALGRLGDPAAVPALIAALADEDPDVRAAAARALGRLGDPRAVPALLEALKDPDPEVRAAAAEALGRIGD---- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1541 ggeeavqlleaekgfekigdqetvkrliqlfvsnkysgqhgartiaaetlrniedqealtplilflkeednmlrqtaadg 1620
Cdd:COG1413 --------------------------------------------------------------------------------
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1371146644 1621 lgrtrsEEAVRPLILALKDEDNLVRESAAEALESIGSEGAVKPLLLALKDKKEGVRARAASALWHIA 1687
Cdd:COG1413 77 ------PEAVPALIAALKDEDPEVRRAAAEALGRLGDPAAVPALLEALKDPDWEVRRAAARALGRLG 137
|
|
| HEAT |
COG1413 |
HEAT repeat [General function prediction only]; |
883-1020 |
5.19e-23 |
|
HEAT repeat [General function prediction only];
Pssm-ID: 441023 [Multi-domain] Cd Length: 137 Bit Score: 96.24 E-value: 5.19e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 883 ALMALEEFKDcsikTTIINDISNYLTDnSQVLLRGKIVEALRAIRSEEAAILLIMAMKHEDKNVREKASEALEKKGSEEE 962
Cdd:COG1413 5 AARALGRLGD----PAAVPALIAALAD-EDPDVRAAAARALGRLGDPRAVPALLEALKDPDPEVRAAAAEALGRIGDPEA 79
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1371146644 963 FSPLIIALKDENKDVRKRAVIALEKIGGEKVVQPLIIALKDEDKYVRRRAVFALERIR 1020
Cdd:COG1413 80 VPALIAALKDEDPEVRRAAAEALGRLGDPAAVPALLEALKDPDWEVRRAAARALGRLG 137
|
|
| PRK13800 |
PRK13800 |
fumarate reductase/succinate dehydrogenase flavoprotein subunit; |
1185-1500 |
1.42e-19 |
|
fumarate reductase/succinate dehydrogenase flavoprotein subunit;
Pssm-ID: 237512 [Multi-domain] Cd Length: 897 Bit Score: 95.69 E-value: 1.42e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1185 IIALEkirsEEAVQSLTLALNYEDKNVRKTAAETLGHIENKEAFHLLIVALKDENKEVRSSAAEALghigsGEAVQPLTl 1264
Cdd:PRK13800 615 VLALD----APSVAELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGL-----RELVEVLP- 684
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1265 alkdedkdvrksAAEALGEirseevvhplilALKDEDKDVRERAVFTLGGIRSKEAVQpLTLASKDEDKHVRERAVFALg 1344
Cdd:PRK13800 685 ------------PAPALRD------------HLGSPDPVVRAAALDVLRALRAGDAAL-FAAALGDPDHRVRIEAVRAL- 738
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1345 eiRSEEVVKPLTLALKDEDKDVRKKAVFALEEIRSEEAVS-PLILVL-KDENYTVRYLAVEALGYIR-SEEAVKPLVLAL 1421
Cdd:PRK13800 739 --VSVDDVESVAGAATDENREVRIAVAKGLATLGAGGAPAgDAVRALtGDPDPLVRAAALAALAELGcPPDDVAAATAAL 816
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1422 SDKSNLVRESAVEALGYIRSEEAVNSLILVLKDENADreVRESAARALGKIRNEEAVQ-PLILALEDEDKDMRIAVTEAL 1500
Cdd:PRK13800 817 RASAWQVRQGAARALAGAAADVAVPALVEALTDPHLD--VRKAAVLALTRWPGDPAARdALTTALTDSDADVRAYARRAL 894
|
|
| PRK13800 |
PRK13800 |
fumarate reductase/succinate dehydrogenase flavoprotein subunit; |
1259-1532 |
1.83e-18 |
|
fumarate reductase/succinate dehydrogenase flavoprotein subunit;
Pssm-ID: 237512 [Multi-domain] Cd Length: 897 Bit Score: 92.22 E-value: 1.83e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1259 VQPLTLALKDEDKDVRKSAAEALGEIRSEEVVHPLILALKDEDKDVRERAVFTLggirsKEAVQPLTLASK------DED 1332
Cdd:PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGL-----RELVEVLPPAPAlrdhlgSPD 697
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1333 KHVRERAVFALGEIRSEEVVKpLTLALKDEDKDVRKKAVFALEEIRSEEAVSpliLVLKDENYTVRYLAVEALGYIRSEE 1412
Cdd:PRK13800 698 PVVRAAALDVLRALRAGDAAL-FAAALGDPDHRVRIEAVRALVSVDDVESVA---GAATDENREVRIAVAKGLATLGAGG 773
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1413 AVK-PLVLALS-DKSNLVRESAVEALGYIRSEEAVNSLILVLKDENAdREVRESAARALGKIRNEEAVQPLILALEDEDK 1490
Cdd:PRK13800 774 APAgDAVRALTgDPDPLVRAAALAALAELGCPPDDVAAATAALRASA-WQVRQGAARALAGAAADVAVPALVEALTDPHL 852
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1371146644 1491 DMRIAVTEALGEIKTEEAV-NPLILVLNDNNEEVRERAVFALE 1532
Cdd:PRK13800 853 DVRKAAVLALTRWPGDPAArDALTTALTDSDADVRAYARRALA 895
|
|
| HEAT_2 |
pfam13646 |
HEAT repeats; This family includes multiple HEAT repeats. |
994-1079 |
8.25e-18 |
|
HEAT repeats; This family includes multiple HEAT repeats.
Pssm-ID: 433376 [Multi-domain] Cd Length: 88 Bit Score: 79.69 E-value: 8.25e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 994 VQPLIIAL-KDEDKYVRRRAVFALERIRSEKAVQSLTLALKDEDKYVRQRAVIALEKIGSEKVVQPLIIALK-DEDKYVR 1071
Cdd:pfam13646 1 LPALLQALlRDPDPEVRAAAIRALGRIGDPEAVPALLELLKDEDPAVRRAAAEALGKIGDPEALPALLELLRdDDDDVVR 80
|
....*...
gi 1371146644 1072 RRAVFALG 1079
Cdd:pfam13646 81 AAAAEALA 88
|
|
| HEAT_2 |
pfam13646 |
HEAT repeats; This family includes multiple HEAT repeats. |
1056-1141 |
2.87e-17 |
|
HEAT repeats; This family includes multiple HEAT repeats.
Pssm-ID: 433376 [Multi-domain] Cd Length: 88 Bit Score: 78.15 E-value: 2.87e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1056 VQPLIIAL-KDEDKYVRRRAVFALGNIGGKEAVQPLIVALKDEDKDVRKKAAEALGKIGSEEAVQSLIFAFKN-QGMELQ 1133
Cdd:pfam13646 1 LPALLQALlRDPDPEVRAAAIRALGRIGDPEAVPALLELLKDEDPAVRRAAAEALGKIGDPEALPALLELLRDdDDDVVR 80
|
....*...
gi 1371146644 1134 KKAAEALG 1141
Cdd:pfam13646 81 AAAAEALA 88
|
|
| HEAT_2 |
pfam13646 |
HEAT repeats; This family includes multiple HEAT repeats. |
1352-1437 |
5.84e-17 |
|
HEAT repeats; This family includes multiple HEAT repeats.
Pssm-ID: 433376 [Multi-domain] Cd Length: 88 Bit Score: 77.38 E-value: 5.84e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1352 VKPLTLAL-KDEDKDVRKKAVFALEEIRSEEAVSPLILVLKDENYTVRYLAVEALGYIRSEEAVKPLV-LALSDKSNLVR 1429
Cdd:pfam13646 1 LPALLQALlRDPDPEVRAAAIRALGRIGDPEAVPALLELLKDEDPAVRRAAAEALGKIGDPEALPALLeLLRDDDDDVVR 80
|
....*...
gi 1371146644 1430 ESAVEALG 1437
Cdd:pfam13646 81 AAAAEALA 88
|
|
| HEAT_2 |
pfam13646 |
HEAT repeats; This family includes multiple HEAT repeats. |
1028-1110 |
8.29e-17 |
|
HEAT repeats; This family includes multiple HEAT repeats.
Pssm-ID: 433376 [Multi-domain] Cd Length: 88 Bit Score: 76.99 E-value: 8.29e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1028 LTLALKDEDKYVRQRAVIALEKIGSEKVVQPLIIALKDEDKYVRRRAVFALGNIGGKEAVQPLI-VALKDEDKDVRKKAA 1106
Cdd:pfam13646 5 LQALLRDPDPEVRAAAIRALGRIGDPEAVPALLELLKDEDPAVRRAAAEALGKIGDPEALPALLeLLRDDDDDVVRAAAA 84
|
....
gi 1371146644 1107 EALG 1110
Cdd:pfam13646 85 EALA 88
|
|
| HEAT_2 |
pfam13646 |
HEAT repeats; This family includes multiple HEAT repeats. |
1229-1313 |
8.79e-17 |
|
HEAT repeats; This family includes multiple HEAT repeats.
Pssm-ID: 433376 [Multi-domain] Cd Length: 88 Bit Score: 76.99 E-value: 8.79e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1229 HLLIVALKDENKEVRSSAAEALGHIGSGEAVQPLTLALKDEDKDVRKSAAEALGEIRSEEVVHPLI-LALKDEDKDVRER 1307
Cdd:pfam13646 3 ALLQALLRDPDPEVRAAAIRALGRIGDPEAVPALLELLKDEDPAVRRAAAEALGKIGDPEALPALLeLLRDDDDDVVRAA 82
|
....*.
gi 1371146644 1308 AVFTLG 1313
Cdd:pfam13646 83 AAEALA 88
|
|
| HEAT_2 |
pfam13646 |
HEAT repeats; This family includes multiple HEAT repeats. |
1445-1532 |
1.17e-16 |
|
HEAT repeats; This family includes multiple HEAT repeats.
Pssm-ID: 433376 [Multi-domain] Cd Length: 88 Bit Score: 76.61 E-value: 1.17e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1445 VNSLILVLKDEnADREVRESAARALGKIRNEEAVQPLILALEDEDKDMRIAVTEALGEIKTEEAVNPLI-LVLNDNNEEV 1523
Cdd:pfam13646 1 LPALLQALLRD-PDPEVRAAAIRALGRIGDPEAVPALLELLKDEDPAVRRAAAEALGKIGDPEALPALLeLLRDDDDDVV 79
|
....*....
gi 1371146644 1524 RERAVFALE 1532
Cdd:pfam13646 80 RAAAAEALA 88
|
|
| HEAT_2 |
pfam13646 |
HEAT repeats; This family includes multiple HEAT repeats. |
1383-1470 |
3.00e-16 |
|
HEAT repeats; This family includes multiple HEAT repeats.
Pssm-ID: 433376 [Multi-domain] Cd Length: 88 Bit Score: 75.45 E-value: 3.00e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1383 VSPLI-LVLKDENYTVRYLAVEALGYIRSEEAVKPLVLALSDKSNLVRESAVEALGYIRSEEAVNSLILVLKDENaDREV 1461
Cdd:pfam13646 1 LPALLqALLRDPDPEVRAAAIRALGRIGDPEAVPALLELLKDEDPAVRRAAAEALGKIGDPEALPALLELLRDDD-DDVV 79
|
....*....
gi 1371146644 1462 RESAARALG 1470
Cdd:pfam13646 80 RAAAAEALA 88
|
|
| HEAT_2 |
pfam13646 |
HEAT repeats; This family includes multiple HEAT repeats. |
966-1048 |
3.21e-16 |
|
HEAT repeats; This family includes multiple HEAT repeats.
Pssm-ID: 433376 [Multi-domain] Cd Length: 88 Bit Score: 75.45 E-value: 3.21e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 966 LIIALKDENKDVRKRAVIALEKIGGEKVVQPLIIALKDEDKYVRRRAVFALERIRSEKAVQSLT-LALKDEDKYVRQRAV 1044
Cdd:pfam13646 5 LQALLRDPDPEVRAAAIRALGRIGDPEAVPALLELLKDEDPAVRRAAAEALGKIGDPEALPALLeLLRDDDDDVVRAAAA 84
|
....
gi 1371146644 1045 IALE 1048
Cdd:pfam13646 85 EALA 88
|
|
| HEAT_2 |
pfam13646 |
HEAT repeats; This family includes multiple HEAT repeats. |
1207-1282 |
6.04e-16 |
|
HEAT repeats; This family includes multiple HEAT repeats.
Pssm-ID: 433376 [Multi-domain] Cd Length: 88 Bit Score: 74.68 E-value: 6.04e-16
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1371146644 1207 EDKNVRKTAAETLGHIENKEAFHLLIVALKDENKEVRSSAAEALGHIGSGEAVQPLT-LALKDEDKDVRKSAAEALG 1282
Cdd:pfam13646 12 PDPEVRAAAIRALGRIGDPEAVPALLELLKDEDPAVRRAAAEALGKIGDPEALPALLeLLRDDDDDVVRAAAAEALA 88
|
|
| PRK09687 |
PRK09687 |
putative lyase; Provisional |
1351-1533 |
1.14e-15 |
|
putative lyase; Provisional
Pssm-ID: 170047 [Multi-domain] Cd Length: 280 Bit Score: 79.40 E-value: 1.14e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1351 VVKPLTLALKDEDKDVRKKAVFALEeIRSEEAVSPLILVL-KDENYTVRYLAVEALGYI----RSEEAVKPLVLALS--D 1423
Cdd:PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQ-LRGGQDVFRLAIELcSSKNPIERDIGADILSQLgmakRCQDNVFNILNNLAleD 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1424 KSNLVRESAVEALGY------IRSEEAVNSLILVLKDENADreVRESAARALGKIRNEEAVQPLILALEDEDKDMRIAVT 1497
Cdd:PRK09687 103 KSACVRASAINATGHrckknpLYSPKIVEQSQITAFDKSTN--VRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAA 180
|
170 180 190
....*....|....*....|....*....|....*...
gi 1371146644 1498 EALG--EIKTEEAVNPLILVLNDNNEEVRERAVFALEK 1533
Cdd:PRK09687 181 FALNsnKYDNPDIREAFVAMLQDKNEEIRIEAIIGLAL 218
|
|
| HEAT_2 |
pfam13646 |
HEAT repeats; This family includes multiple HEAT repeats. |
1293-1375 |
2.21e-15 |
|
HEAT repeats; This family includes multiple HEAT repeats.
Pssm-ID: 433376 [Multi-domain] Cd Length: 88 Bit Score: 72.76 E-value: 2.21e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1293 LILALKDEDKDVRERAVFTLGGIRSKEAVQPLTLASKDEDKHVRERAVFALGEIRSEEVVKPLT-LALKDEDKDVRKKAV 1371
Cdd:pfam13646 5 LQALLRDPDPEVRAAAIRALGRIGDPEAVPALLELLKDEDPAVRRAAAEALGKIGDPEALPALLeLLRDDDDDVVRAAAA 84
|
....
gi 1371146644 1372 FALE 1375
Cdd:pfam13646 85 EALA 88
|
|
| PRK13800 |
PRK13800 |
fumarate reductase/succinate dehydrogenase flavoprotein subunit; |
1040-1405 |
2.55e-15 |
|
fumarate reductase/succinate dehydrogenase flavoprotein subunit;
Pssm-ID: 237512 [Multi-domain] Cd Length: 897 Bit Score: 81.82 E-value: 2.55e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1040 RQRAVIALEkigsEKVVQPLIIALKDEDKYVRRRAVFALGNIGGKEAVQPLIVALKDEDKDVRKKAAEALgkigsEEAVQ 1119
Cdd:PRK13800 611 RILAVLALD----APSVAELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGL-----RELVE 681
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1120 SLifafknqgmelqkKAAEALGK-IGSEEAVqslifaVKDQVMELqkkaavsniqrlkikevvkcliiaLEKIRSEEAVQ 1198
Cdd:PRK13800 682 VL-------------PPAPALRDhLGSPDPV------VRAAALDV------------------------LRALRAGDAAL 718
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1199 SLTlALNYEDKNVRKTAAETLGHIENKEAfhlLIVALKDENKEVRSSAAEALGHIGSG-----EAVQPLTlalKDEDKDV 1273
Cdd:PRK13800 719 FAA-ALGDPDHRVRIEAVRALVSVDDVES---VAGAATDENREVRIAVAKGLATLGAGgapagDAVRALT---GDPDPLV 791
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1274 RKSAAEALGEIRseevVHPLILAlkdedkdvreravftlggirskeavqPLTLASKDEDKHVRERAVFALGEIRSEEVVK 1353
Cdd:PRK13800 792 RAAALAALAELG----CPPDDVA--------------------------AATAALRASAWQVRQGAARALAGAAADVAVP 841
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 1371146644 1354 PLTLALKDEDKDVRKKAVFALEEIRSEEAV-SPLILVLKDENYTVRYLAVEAL 1405
Cdd:PRK13800 842 ALVEALTDPHLDVRKAAVLALTRWPGDPAArDALTTALTDSDADVRAYARRAL 894
|
|
| HEAT_2 |
pfam13646 |
HEAT repeats; This family includes multiple HEAT repeats. |
1324-1406 |
6.57e-15 |
|
HEAT repeats; This family includes multiple HEAT repeats.
Pssm-ID: 433376 [Multi-domain] Cd Length: 88 Bit Score: 71.60 E-value: 6.57e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1324 LTLASKDEDKHVRERAVFALGEIRSEEVVKPLTLALKDEDKDVRKKAVFALEEIRSEEAVSPLI-LVLKDENYTVRYLAV 1402
Cdd:pfam13646 5 LQALLRDPDPEVRAAAIRALGRIGDPEAVPALLELLKDEDPAVRRAAAEALGKIGDPEALPALLeLLRDDDDDVVRAAAA 84
|
....
gi 1371146644 1403 EALG 1406
Cdd:pfam13646 85 EALA 88
|
|
| HEAT_2 |
pfam13646 |
HEAT repeats; This family includes multiple HEAT repeats. |
1262-1344 |
9.80e-15 |
|
HEAT repeats; This family includes multiple HEAT repeats.
Pssm-ID: 433376 [Multi-domain] Cd Length: 88 Bit Score: 71.21 E-value: 9.80e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1262 LTLALKDEDKDVRKSAAEALGEIRSEEVVHPLILALKDEDKDVRERAVFTLGGIRSKEAVQPLT-LASKDEDKHVRERAV 1340
Cdd:pfam13646 5 LQALLRDPDPEVRAAAIRALGRIGDPEAVPALLELLKDEDPAVRRAAAEALGKIGDPEALPALLeLLRDDDDDVVRAAAA 84
|
....
gi 1371146644 1341 FALG 1344
Cdd:pfam13646 85 EALA 88
|
|
| PRK13800 |
PRK13800 |
fumarate reductase/succinate dehydrogenase flavoprotein subunit; |
978-1308 |
2.51e-14 |
|
fumarate reductase/succinate dehydrogenase flavoprotein subunit;
Pssm-ID: 237512 [Multi-domain] Cd Length: 897 Bit Score: 78.74 E-value: 2.51e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 978 RKRAVIALEkiggEKVVQPLIIALKDEDKYVRRRAVFALERIRSEKAVQSLTLALKDEDKYVRQRAVIALEKIgSEKVVQ 1057
Cdd:PRK13800 611 RILAVLALD----APSVAELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLREL-VEVLPP 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1058 PLIIA--LKDEDKYVRRRAVFALGNIGGKEAVQpLIVALKDEDKDVRKKAAEALGkigSEEAVQSLIFAFKNQGMELQKK 1135
Cdd:PRK13800 686 APALRdhLGSPDPVVRAAALDVLRALRAGDAAL-FAAALGDPDHRVRIEAVRALV---SVDDVESVAGAATDENREVRIA 761
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1136 AAEALGKIGSEEAVQSlifavkdqvmelqkkaavsniqrlkikevvkcliialekirseEAVQSLTlalNYEDKNVRKTA 1215
Cdd:PRK13800 762 VAKGLATLGAGGAPAG-------------------------------------------DAVRALT---GDPDPLVRAAA 795
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1216 AETLGHIE-NKEAFHLLIVALKDENKEVRSSAAEALGHIGSGEAVQPLTLALKDEDKDVRKSAAEALGEIRSEEVVH-PL 1293
Cdd:PRK13800 796 LAALAELGcPPDDVAAATAALRASAWQVRQGAARALAGAAADVAVPALVEALTDPHLDVRKAAVLALTRWPGDPAARdAL 875
|
330
....*....|....*
gi 1371146644 1294 ILALKDEDKDVRERA 1308
Cdd:PRK13800 876 TTALTDSDADVRAYA 890
|
|
| HEAT_2 |
pfam13646 |
HEAT repeats; This family includes multiple HEAT repeats. |
934-1017 |
6.62e-14 |
|
HEAT repeats; This family includes multiple HEAT repeats.
Pssm-ID: 433376 [Multi-domain] Cd Length: 88 Bit Score: 68.52 E-value: 6.62e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 934 LLIMAMKHEDKNVREKASEALEKKGSEEEFSPLIIALKDENKDVRKRAVIALEKIGGEKVVQPLIIALK-DEDKYVRRRA 1012
Cdd:pfam13646 4 LLQALLRDPDPEVRAAAIRALGRIGDPEAVPALLELLKDEDPAVRRAAAEALGKIGDPEALPALLELLRdDDDDVVRAAA 83
|
....*
gi 1371146644 1013 VFALE 1017
Cdd:pfam13646 84 AEALA 88
|
|
| PRK13800 |
PRK13800 |
fumarate reductase/succinate dehydrogenase flavoprotein subunit; |
881-1158 |
7.57e-14 |
|
fumarate reductase/succinate dehydrogenase flavoprotein subunit;
Pssm-ID: 237512 [Multi-domain] Cd Length: 897 Bit Score: 77.20 E-value: 7.57e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 881 LLALMALEEfkdcsiktTIINDISNYLTDNSQVLlRGKIVEALRAIRSEEAAILLIMAMKHEDKNVREKASEAL-EKKGS 959
Cdd:PRK13800 612 ILAVLALDA--------PSVAELAPYLADPDPGV-RRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLrELVEV 682
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 960 EEEFSPLIIALKDENKDVRKRAVIALEKIGGEKVVQpLIIALKDEDKYVRRRAVFALErirSEKAVQSLTLALKDEDKYV 1039
Cdd:PRK13800 683 LPPAPALRDHLGSPDPVVRAAALDVLRALRAGDAAL-FAAALGDPDHRVRIEAVRALV---SVDDVESVAGAATDENREV 758
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1040 RQRAVIALEKIGSEKVVQ-PLIIAL-KDEDKYVRRRAVFALGNIG-GKEAVQPLIVALKDEDKDVRKKAAEALGKIGSEE 1116
Cdd:PRK13800 759 RIAVAKGLATLGAGGAPAgDAVRALtGDPDPLVRAAALAALAELGcPPDDVAAATAALRASAWQVRQGAARALAGAAADV 838
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1371146644 1117 AVQSLIFAFKNQGMELQKKAAEALGKI-GSEEAVQSLIFAVKD 1158
Cdd:PRK13800 839 AVPALVEALTDPHLDVRKAAVLALTRWpGDPAARDALTTALTD 881
|
|
| PRK13800 |
PRK13800 |
fumarate reductase/succinate dehydrogenase flavoprotein subunit; |
970-1252 |
2.06e-13 |
|
fumarate reductase/succinate dehydrogenase flavoprotein subunit;
Pssm-ID: 237512 [Multi-domain] Cd Length: 897 Bit Score: 75.66 E-value: 2.06e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 970 LKDENKDVRKRAVIALEKIGGEKVVQPLIIALKDEDKYVRRRAVFAL-ERIRSEKAVQSLTLALKDEDKYVRQRAVIALE 1048
Cdd:PRK13800 630 LADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLrELVEVLPPAPALRDHLGSPDPVVRAAALDVLR 709
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1049 KIGSEKVVQpLIIALKDEDKYVRRRAVFALGNIggkEAVQPLIVALKDEDKDVRKKAAEALGKIGSEEAVQS-LIFAFKN 1127
Cdd:PRK13800 710 ALRAGDAAL-FAAALGDPDHRVRIEAVRALVSV---DDVESVAGAATDENREVRIAVAKGLATLGAGGAPAGdAVRALTG 785
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1128 QGMELQKKAA-EALGKIG-SEEAVQSLIFAVKDQVMELQKKAAVsniqrlkikevvkcliiALEKIRSEEAVQSLTLALN 1205
Cdd:PRK13800 786 DPDPLVRAAAlAALAELGcPPDDVAAATAALRASAWQVRQGAAR-----------------ALAGAAADVAVPALVEALT 848
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 1371146644 1206 YEDKNVRKTAAETLG-HIENKEAFHLLIVALKDENKEVRSSAAEALGH 1252
Cdd:PRK13800 849 DPHLDVRKAAVLALTrWPGDPAARDALTTALTDSDADVRAYARRALAH 896
|
|
| HEAT_2 |
pfam13646 |
HEAT repeats; This family includes multiple HEAT repeats. |
1602-1683 |
2.83e-13 |
|
HEAT repeats; This family includes multiple HEAT repeats.
Pssm-ID: 433376 [Multi-domain] Cd Length: 88 Bit Score: 66.98 E-value: 2.83e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1602 LILFLKEEDNMLRQTAADGLGRTRSEEAVRPLILALKDEDNLVRESAAEALESIGSEGAVKPLL-LALKDKKEGVRARAA 1680
Cdd:pfam13646 5 LQALLRDPDPEVRAAAIRALGRIGDPEAVPALLELLKDEDPAVRRAAAEALGKIGDPEALPALLeLLRDDDDDVVRAAAA 84
|
...
gi 1371146644 1681 SAL 1683
Cdd:pfam13646 85 EAL 87
|
|
| PRK13800 |
PRK13800 |
fumarate reductase/succinate dehydrogenase flavoprotein subunit; |
1326-1685 |
4.65e-13 |
|
fumarate reductase/succinate dehydrogenase flavoprotein subunit;
Pssm-ID: 237512 [Multi-domain] Cd Length: 897 Bit Score: 74.50 E-value: 4.65e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1326 LASKDEDKHVRERAVFALGEIRSEEVVKPLTLALKDEDKDVRKKAVFALEEiRSEEAVSPLilvLKDENYTVRYLAVEAL 1405
Cdd:PRK13800 570 LPPVDRTVVPVGQPPLHGGRAPAEGVSRAAAPATAPEPPSPRILAVLALDA-PSVAELAPY---LADPDPGVRRTAVAVL 645
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1406 GYIRSEEAVKPLVLALSDKSNLVRESAVEALgyirseeavNSLILVLKDENA--------DREVRESAARALGKIRNEEA 1477
Cdd:PRK13800 646 TETTPPGFGPALVAALGDGAAAVRRAAAEGL---------RELVEVLPPAPAlrdhlgspDPVVRAAALDVLRALRAGDA 716
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1478 VQpLILALEDEDKDMRIAVTEALGEIkteEAVNPLILVLNDNNEEVRERAVFALEKIGSlekmGGEEAVQLLEAekgfeK 1557
Cdd:PRK13800 717 AL-FAAALGDPDHRVRIEAVRALVSV---DDVESVAGAATDENREVRIAVAKGLATLGA----GGAPAGDAVRA-----L 783
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1558 IGDQETVKRLiqlfvsnkysgqhGARTIAAETLrniEDQEALTPLILFLKEEDNMLRQTAADGLGRTRSEEAVRPLILAL 1637
Cdd:PRK13800 784 TGDPDPLVRA-------------AALAALAELG---CPPDDVAAATAALRASAWQVRQGAARALAGAAADVAVPALVEAL 847
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 1371146644 1638 KDEDNLVRESAAEALESI-GSEGAVKPLLLALKDKKEGVRARAASALWH 1685
Cdd:PRK13800 848 TDPHLDVRKAAVLALTRWpGDPAARDALTTALTDSDADVRAYARRALAH 896
|
|
| PRK09687 |
PRK09687 |
putative lyase; Provisional |
1171-1391 |
4.73e-12 |
|
putative lyase; Provisional
Pssm-ID: 170047 [Multi-domain] Cd Length: 280 Bit Score: 68.62 E-value: 4.73e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1171 NIQRLKIKEVVKCLiialeKIRSEEAVqsLTLALNY---EDKNVRKTAAETLGHI-----ENKEAFHLLI-VALKDENKE 1241
Cdd:PRK09687 34 DHNSLKRISSIRVL-----QLRGGQDV--FRLAIELcssKNPIERDIGADILSQLgmakrCQDNVFNILNnLALEDKSAC 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1242 VRSSAAEALGHIGSG------EAVQPLTLALKDEDKDVRKSAAEALGEIRSEEVVHPLILALKDEDKDVRERAVFTLGGI 1315
Cdd:PRK09687 107 VRASAINATGHRCKKnplyspKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSN 186
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1371146644 1316 R--SKEAVQPLTLASKDEDKHVRERAVFALGEIRSEEVVKPLTLALKDEDKDVrkKAVFALEEIRSEEAVSPLILVLK 1391
Cdd:PRK09687 187 KydNPDIREAFVAMLQDKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGTVGD--LIIEAAGELGDKTLLPVLDTLLY 262
|
|
| PRK09687 |
PRK09687 |
putative lyase; Provisional |
1261-1465 |
9.98e-11 |
|
putative lyase; Provisional
Pssm-ID: 170047 [Multi-domain] Cd Length: 280 Bit Score: 64.38 E-value: 9.98e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1261 PLTLALKDEDKDVRKSAAEALgEIRSEEVVHPLILALKdEDKDVRERA--VFTLGGI----RSKEAVQPL--TLASKDED 1332
Cdd:PRK09687 27 ELFRLLDDHNSLKRISSIRVL-QLRGGQDVFRLAIELC-SSKNPIERDigADILSQLgmakRCQDNVFNIlnNLALEDKS 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1333 KHVRERAVFALGE------IRSEEVVKPLTLALKDEDKDVRKKAVFALEEIRSEEAVSPLILVLKDENYTVRYLAVEALG 1406
Cdd:PRK09687 105 ACVRASAINATGHrckknpLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALN 184
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1371146644 1407 YIR--SEEAVKPLVLALSDKSNLVRESAVEALGYIRSEEAVNSLILVLKDENADREVRESA 1465
Cdd:PRK09687 185 SNKydNPDIREAFVAMLQDKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGTVGDLIIEAA 245
|
|
| Peptidase_C14 |
pfam00656 |
Caspase domain; |
19-209 |
3.66e-10 |
|
Caspase domain;
Pssm-ID: 425803 Cd Length: 213 Bit Score: 61.57 E-value: 3.66e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 19 LIGVNYSPGcGLSELKYSARDCQTLEKIFRD---EIKpvpseseflVFHDDDSSSLptRDKILETWKHIQVQSND---TV 92
Cdd:pfam00656 6 IIGNNNYPG-TKAPLRGCDNDAEALAKTLKSlgfEVR---------VFEDLTAEEI--RRALRDFAARADHSDGDsfvVV 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 93 IFYFSGHGklDEKDRTVLCLRDTDATQL-ADTGLV-LQNWLDQLANfncKHKIALIDACHSGNVELP-SKNGYVALLSCQ 169
Cdd:pfam00656 74 LLYYSGHG--EQVPGGDIYGTDEYLVPVdALTNLFtGDDCLPSLVG---KPKLFIIDACRGNLEDGGvVEADFLVAYSTA 148
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1371146644 170 PEqqffQYSH---IGNSIFSYYLIRGLREvlsdfPDPDLSVGS 209
Cdd:pfam00656 149 PG----QVSWrntGSGSWFIQALCQVLRE-----YGHGLDLLS 182
|
|
| HEAT_2 |
pfam13646 |
HEAT repeats; This family includes multiple HEAT repeats. |
1583-1653 |
4.45e-10 |
|
HEAT repeats; This family includes multiple HEAT repeats.
Pssm-ID: 433376 [Multi-domain] Cd Length: 88 Bit Score: 57.73 E-value: 4.45e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1371146644 1583 RTIAAETLRNIEDQEALTPLILFLKEEDNMLRQTAADGLGRTRSEEAVRPLI-LALKDEDNLVRESAAEALE 1653
Cdd:pfam13646 17 RAAAIRALGRIGDPEAVPALLELLKDEDPAVRRAAAEALGKIGDPEALPALLeLLRDDDDDVVRAAAAEALA 88
|
|
| PRK09687 |
PRK09687 |
putative lyase; Provisional |
1323-1528 |
1.71e-09 |
|
putative lyase; Provisional
Pssm-ID: 170047 [Multi-domain] Cd Length: 280 Bit Score: 60.91 E-value: 1.71e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1323 PLTLASKDEDKHVRERAVFALgEIRSEEVVKPLTLAL-KDEDKDVRKKAVFALEEI----RSEEAVSPLI--LVLKDENY 1395
Cdd:PRK09687 27 ELFRLLDDHNSLKRISSIRVL-QLRGGQDVFRLAIELcSSKNPIERDIGADILSQLgmakRCQDNVFNILnnLALEDKSA 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1396 TVRYLAVEALGY------IRSEEAVKPLVLALSDKSNLVRESAVEALGYIRSEEAVNSLILVLKDENADreVRESAARAL 1469
Cdd:PRK09687 106 CVRASAINATGHrckknpLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGD--VRNWAAFAL 183
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1371146644 1470 G--KIRNEEAVQPLILALEDEDKDMRIAVTEALGEIKTEEAVNPLI--LVLNDNNEEVRERAV 1528
Cdd:PRK09687 184 NsnKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKDKRVLSVLIkeLKKGTVGDLIIEAAG 246
|
|
| HEAT_2 |
pfam13646 |
HEAT repeats; This family includes multiple HEAT repeats. |
1478-1551 |
1.14e-08 |
|
HEAT repeats; This family includes multiple HEAT repeats.
Pssm-ID: 433376 [Multi-domain] Cd Length: 88 Bit Score: 53.88 E-value: 1.14e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1371146644 1478 VQPLILAL-EDEDKDMRIAVTEALGEIKTEEAVNPLILVLNDNNEEVRERAVFALEKIGSlekmggEEAVQLLEA 1551
Cdd:pfam13646 1 LPALLQALlRDPDPEVRAAAIRALGRIGDPEAVPALLELLKDEDPAVRRAAAEALGKIGD------PEALPALLE 69
|
|
| HEAT_2 |
pfam13646 |
HEAT repeats; This family includes multiple HEAT repeats. |
1185-1251 |
1.23e-08 |
|
HEAT repeats; This family includes multiple HEAT repeats.
Pssm-ID: 433376 [Multi-domain] Cd Length: 88 Bit Score: 53.88 E-value: 1.23e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1371146644 1185 IIALEKIRSEEAVQSLTLALNYEDKNVRKTAAETLGHIENKEAF-HLLIVALKDENKEVRSSAAEALG 1251
Cdd:pfam13646 21 IRALGRIGDPEAVPALLELLKDEDPAVRRAAAEALGKIGDPEALpALLELLRDDDDDVVRAAAAEALA 88
|
|
| HEAT_2 |
pfam13646 |
HEAT repeats; This family includes multiple HEAT repeats. |
900-986 |
1.60e-07 |
|
HEAT repeats; This family includes multiple HEAT repeats.
Pssm-ID: 433376 [Multi-domain] Cd Length: 88 Bit Score: 50.41 E-value: 1.60e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 900 INDISNYLTDNSQVLLRGKIVEALRAIRSEEAAILLIMAMKHEDKNVREKASEALEKKGSEEEFSPLIIALKDENKD-VR 978
Cdd:pfam13646 1 LPALLQALLRDPDPEVRAAAIRALGRIGDPEAVPALLELLKDEDPAVRRAAAEALGKIGDPEALPALLELLRDDDDDvVR 80
|
....*...
gi 1371146644 979 KRAVIALE 986
Cdd:pfam13646 81 AAAAEALA 88
|
|
| PRK13800 |
PRK13800 |
fumarate reductase/succinate dehydrogenase flavoprotein subunit; |
915-1048 |
1.87e-07 |
|
fumarate reductase/succinate dehydrogenase flavoprotein subunit;
Pssm-ID: 237512 [Multi-domain] Cd Length: 897 Bit Score: 56.01 E-value: 1.87e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 915 LRGKIVEALRAIRSEEAAIL-LIMAMKHE-DKNVREKASEALEKKG-SEEEFSPLIIALKDENKDVRKRAVIALEKIGGE 991
Cdd:PRK13800 758 VRIAVAKGLATLGAGGAPAGdAVRALTGDpDPLVRAAALAALAELGcPPDDVAAATAALRASAWQVRQGAARALAGAAAD 837
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1371146644 992 KVVQPLIIALKDEDKYVRRRAVFALERIRSEKAVQ-SLTLALKDEDKYVRQRAVIALE 1048
Cdd:PRK13800 838 VAVPALVEALTDPHLDVRKAAVLALTRWPGDPAARdALTTALTDSDADVRAYARRALA 895
|
|
| PRK13800 |
PRK13800 |
fumarate reductase/succinate dehydrogenase flavoprotein subunit; |
1463-1693 |
2.27e-07 |
|
fumarate reductase/succinate dehydrogenase flavoprotein subunit;
Pssm-ID: 237512 [Multi-domain] Cd Length: 897 Bit Score: 56.01 E-value: 2.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1463 ESAARALGKIRNEEAVQPLILA---------------LEDEDKDMRIAVTEALGEIKTEEAVNPLILVLNDNNEEVRERA 1527
Cdd:PRK13800 593 EGVSRAAAPATAPEPPSPRILAvlaldapsvaelapyLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAA 672
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1528 VFALekigslekmggEEAVQLLEAEKGF-EKIGDQETVKRLIQL-------------FVSNKYSGQHGARTIAAETLRNI 1593
Cdd:PRK13800 673 AEGL-----------RELVEVLPPAPALrDHLGSPDPVVRAAALdvlralragdaalFAAALGDPDHRVRIEAVRALVSV 741
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1594 EDQEALTpliLFLKEEDNMLRQTAADGLGRTRSEEAVR-PLILAL-KDEDNLVRESAAEALESIGSEGA-VKPLLLALKD 1670
Cdd:PRK13800 742 DDVESVA---GAATDENREVRIAVAKGLATLGAGGAPAgDAVRALtGDPDPLVRAAALAALAELGCPPDdVAAATAALRA 818
|
250 260
....*....|....*....|...
gi 1371146644 1671 KKEGVRARAASALWHIAKTTSYP 1693
Cdd:PRK13800 819 SAWQVRQGAARALAGAAADVAVP 841
|
|
| EZ_HEAT |
smart00567 |
E-Z type HEAT repeats; Present in subunits of cyanobacterial phycocyanin lyase, and other ... |
1069-1097 |
2.59e-07 |
|
E-Z type HEAT repeats; Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Pssm-ID: 128837 [Multi-domain] Cd Length: 30 Bit Score: 48.18 E-value: 2.59e-07
10 20
....*....|....*....|....*....
gi 1371146644 1069 YVRRRAVFALGNIGGKEAVQPLIVALKDE 1097
Cdd:smart00567 2 LVRHEAAFALGQLGDEEAVPALIKALEDE 30
|
|
| NACHT |
pfam05729 |
NACHT domain; This NTPase domain is found in apoptosis proteins as well as those involved in ... |
500-651 |
6.62e-07 |
|
NACHT domain; This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Pssm-ID: 428606 [Multi-domain] Cd Length: 166 Bit Score: 51.15 E-value: 6.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 500 VILGEPGAGKTTYLQKC--GWWLHEYTQDP--VIWISLKQVSDIE------TYVLEKWLPEVLKVSKVeeshRKQLEKlf 569
Cdd:pfam05729 4 ILQGEAGSGKTTLLQKLalLWAQGKLPQGFdfVFFLPCRELSRSGnarslaDLLFSQWPEPAAPVSEV----WAVILE-- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 570 RQERVWLLLDGVDEMsVSKGSPLSAIAQLPAWL---------KQARVILTCRRNLWETsfSNQLGNQFDCYWTLEFRSEQ 640
Cdd:pfam05729 78 LPERLLLILDGLDEL-VSDLGQLDGPCPVLTLLssllrkkllPGASLLLTVRPDALRD--LRRGLEEPRYLEVRGFSESD 154
|
170
....*....|.
gi 1371146644 641 ITEFIEYYFTD 651
Cdd:pfam05729 155 RKQYVRKYFSD 165
|
|
| HEAT |
COG1413 |
HEAT repeat [General function prediction only]; |
1644-1693 |
7.38e-07 |
|
HEAT repeat [General function prediction only];
Pssm-ID: 441023 [Multi-domain] Cd Length: 137 Bit Score: 50.01 E-value: 7.38e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1644 VRESAAEALESIGSEGAVKPLLLALKDKKEGVRARAASALWHIAKTTSYP 1693
Cdd:COG1413 1 VRRAAARALGRLGDPAAVPALIAALADEDPDVRAAAARALGRLGDPRAVP 50
|
|
| PRK09687 |
PRK09687 |
putative lyase; Provisional |
956-1110 |
9.22e-07 |
|
putative lyase; Provisional
Pssm-ID: 170047 [Multi-domain] Cd Length: 280 Bit Score: 52.44 E-value: 9.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 956 KKGSEEEFSPLiiaLKDENKDVRKRAVIALEKIGGEKVVQPLIIALKDEDKYVRRRAVFALERI----RSEKAVQSLTLA 1031
Cdd:PRK09687 21 KKLNDDELFRL---LDDHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLgmakRCQDNVFNILNN 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1032 LKDEDKYVRQRAvIALEKIG---------SEKVVQPLIIALKDEDKYVRRRAVFALGNIGGKEAVQPLIVALKDEDKDVR 1102
Cdd:PRK09687 98 LALEDKSACVRA-SAINATGhrckknplySPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVR 176
|
....*...
gi 1371146644 1103 KKAAEALG 1110
Cdd:PRK09687 177 NWAAFALN 184
|
|
| PRK13800 |
PRK13800 |
fumarate reductase/succinate dehydrogenase flavoprotein subunit; |
907-1017 |
3.48e-06 |
|
fumarate reductase/succinate dehydrogenase flavoprotein subunit;
Pssm-ID: 237512 [Multi-domain] Cd Length: 897 Bit Score: 52.16 E-value: 3.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 907 LTDNSQVLLRGKIVEALRAIR-SEEAAILLIMAMKHEDKNVREKASEALEKKGSEEEFSPLIIALKDENKDVRKRAVIAL 985
Cdd:PRK13800 783 LTGDPDPLVRAAALAALAELGcPPDDVAAATAALRASAWQVRQGAARALAGAAADVAVPALVEALTDPHLDVRKAAVLAL 862
|
90 100 110
....*....|....*....|....*....|...
gi 1371146644 986 EKIGGEK-VVQPLIIALKDEDKYVRRRAVFALE 1017
Cdd:PRK13800 863 TRWPGDPaARDALTTALTDSDADVRAYARRALA 895
|
|
| EZ_HEAT |
smart00567 |
E-Z type HEAT repeats; Present in subunits of cyanobacterial phycocyanin lyase, and other ... |
1461-1488 |
6.69e-06 |
|
E-Z type HEAT repeats; Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Pssm-ID: 128837 [Multi-domain] Cd Length: 30 Bit Score: 44.33 E-value: 6.69e-06
10 20
....*....|....*....|....*...
gi 1371146644 1461 VRESAARALGKIRNEEAVQPLILALEDE 1488
Cdd:smart00567 3 VRHEAAFALGQLGDEEAVPALIKALEDE 30
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1015-1541 |
1.24e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.32 E-value: 1.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1015 ALERIRSEKAVQSLTLALKDEDKYVRQRAVIALEKIgsekvvqplIIALKDEDKYVRRRAvfalgniggKEAVQPLIVAL 1094
Cdd:COG1196 268 ELEELRLELEELELELEEAQAEEYELLAELARLEQD---------IARLEERRRELEERL---------EELEEELAELE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1095 KDEDKDVRKKAAEALGKIGSEEAVQSLIFAFKNQGMELQKKAAEALGKIGSEEAVQSLIFAVKDQVMELQKKAAvsNIQR 1174
Cdd:COG1196 330 EELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLE--ELEE 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1175 LKIKEVVKCLIIALEKIRSEEAVQSLTLALNYEDKNVRKTAAETLGHIENKEAFHLLIVALKDENKEVRSSAAEALGHIG 1254
Cdd:COG1196 408 AEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELA 487
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1255 SGEAVQPLTLALKDEDKDVRKSAAEALGEIRSEEVVHPLILALKDEDkdVRERAVFTLGGIRSKEAVQPLTLASKDEDKH 1334
Cdd:COG1196 488 EAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEA--AYEAALEAALAAALQNIVVEDDEVAAAAIEY 565
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1335 VRE----RAVF----------ALGEIRSEEVVKPLTLALKDEDKDVRKKAVFALEEIRSEEAVSPLILVLKDENYTVRYL 1400
Cdd:COG1196 566 LKAakagRATFlpldkiraraALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGR 645
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1401 AVEALGYIRSEEAvKPLVLALSDKSNLVRESAVEALGYIRSEEAVNSLILVLKDENADREVRESAARALGKIRNEEAVQp 1480
Cdd:COG1196 646 LREVTLEGEGGSA-GGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEE- 723
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1371146644 1481 lILALEDEDKDMRIAVTEALGEIKTEEAVNPLILVLNDNNEEVRERaVFALEKigSLEKMG 1541
Cdd:COG1196 724 -EALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERE-LERLER--EIEALG 780
|
|
| HEAT_EZ |
pfam13513 |
HEAT-like repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats ... |
1069-1112 |
1.42e-05 |
|
HEAT-like repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role.
Pssm-ID: 463906 [Multi-domain] Cd Length: 55 Bit Score: 43.89 E-value: 1.42e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 1371146644 1069 YVRRRAVFALGNIGG----------KEAVQPLIVALKDEDKDVRKKAAEALGKI 1112
Cdd:pfam13513 2 RVREAAALALGSLAEggpdllapavPELLPALLPLLNDDSDLVREAAAWALGRL 55
|
|
| HEAT_PBS |
pfam03130 |
PBS lyase HEAT-like repeat; This family contains a short bi-helical repeat that is related to ... |
1070-1096 |
5.34e-05 |
|
PBS lyase HEAT-like repeat; This family contains a short bi-helical repeat that is related to pfam02985. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. This family includes the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/F lyase, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six). All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerization reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif.
Pssm-ID: 308641 [Multi-domain] Cd Length: 27 Bit Score: 41.70 E-value: 5.34e-05
10 20
....*....|....*....|....*..
gi 1371146644 1070 VRRRAVFALGNIGGKEAVQPLIVALKD 1096
Cdd:pfam03130 1 VRRAAARALGALGDPEAIPALIEALDD 27
|
|
| HEAT_PBS |
pfam03130 |
PBS lyase HEAT-like repeat; This family contains a short bi-helical repeat that is related to ... |
1461-1487 |
8.46e-05 |
|
PBS lyase HEAT-like repeat; This family contains a short bi-helical repeat that is related to pfam02985. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. This family includes the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/F lyase, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six). All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerization reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif.
Pssm-ID: 308641 [Multi-domain] Cd Length: 27 Bit Score: 40.93 E-value: 8.46e-05
10 20
....*....|....*....|....*..
gi 1371146644 1461 VRESAARALGKIRNEEAVQPLILALED 1487
Cdd:pfam03130 1 VRRAAARALGALGDPEAIPALIEALDD 27
|
|
| PRK09687 |
PRK09687 |
putative lyase; Provisional |
942-1147 |
1.01e-04 |
|
putative lyase; Provisional
Pssm-ID: 170047 [Multi-domain] Cd Length: 280 Bit Score: 46.27 E-value: 1.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 942 EDKNVREKASE--ALEKKGSEEEFSPLIIALKDENKDVRKRAVIALEKIGG--EKVVQPLII----ALKDEDKYVRRRAV 1013
Cdd:PRK09687 33 DDHNSLKRISSirVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMakRCQDNVFNIlnnlALEDKSACVRASAI 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1014 FAL------ERIRSEKAVQSLTLALKDEDKYVRQRAVIALEKIGSEKVVQPLIIALKDEDKYVRRRAVFALG-NIGGKEA 1086
Cdd:PRK09687 113 NATghrckkNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNsNKYDNPD 192
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1371146644 1087 VQPLIVA-LKDEDKDVRKKAAEALGKIGSEEAVQSLIfafknqgMELQKKAA-----EALGKIGSEE 1147
Cdd:PRK09687 193 IREAFVAmLQDKNEEIRIEAIIGLALRKDKRVLSVLI-------KELKKGTVgdliiEAAGELGDKT 252
|
|
| Adaptin_N |
pfam01602 |
Adaptin N terminal region; This family consists of the N terminal region of various alpha, ... |
1235-1574 |
1.04e-04 |
|
Adaptin N terminal region; This family consists of the N terminal region of various alpha, beta and gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein complexes. The adaptor protein (AP) complexes are involved in the formation of clathrin-coated pits and vesicles. The N-terminal region of the various adaptor proteins (APs) is constant by comparison to the C-terminal which is variable within members of the AP-2 family; and it has been proposed that this constant region interacts with another uniform component of the coated vesicles.
Pssm-ID: 396262 [Multi-domain] Cd Length: 523 Bit Score: 46.85 E-value: 1.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1235 LKDENKEVRSSAAEALGHIGSGEAVQPLTLALKD--EDKD--VRKSAAEALGEI--RSEEVVHPLILALKD--EDKD--V 1304
Cdd:pfam01602 88 LQSPNQLIRGLALRTLSCIRVPELARDLAPDIKKllVDRSpyVRKKAALAILKLyrKSPDLVRDFVPELKEllSDKDpgV 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1305 RERAVFTLggirsKEAVQPLTLASKDEDKHVR--ERAVFALGEIRSEEVVKPLTlALKDEDKDVRKKAV-FALEEIRS-- 1379
Cdd:pfam01602 168 QSAAVALL-----YEICKNDRLYLKLLPLLFRrlCNLLGVLNPWLQVKILRLLT-RLAPLDPLLPKELLeDLLNLLQNsn 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1380 ---------------------EEAVSPLILVLKDENYTVRYLAVEALGYI--RSEEAVKPLVLAL----SDKSNLVRESA 1432
Cdd:pfam01602 242 navlyetantivhlapapeliVLAVNALGRLLSSPDENLRYVALRNLNKIvmKEPKAVQHLDLIIfclkTDDDISIRLRA 321
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1433 VEALGYIRSEEAVNSLILVLKD---ENADREVRESAARALGKI-----RNEEAVQPLILALededkdMRIAVTEALgeik 1504
Cdd:pfam01602 322 LDLLYALVNESNVKEIVKELLKyvhEIADPDFKIELVRAIGRLaekfpTDAEWYLDVLLDL------LSLAGSYVV---- 391
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1371146644 1505 tEEAVNPLILVLNdNNEEVRERAVFALEKigSLEKMGGEEAVQ----LLeAEKGfEKIGDQETVKRLIQLFVSN 1574
Cdd:pfam01602 392 -DEIVEVIRDIIQ-NVPELREYILEHLCE--LLEDIESPEALAaalwIL-GEYG-ELIPNGSSPPDLLRSILEV 459
|
|
| PLN03200 |
PLN03200 |
cellulose synthase-interactive protein; Provisional |
1372-1655 |
1.46e-04 |
|
cellulose synthase-interactive protein; Provisional
Pssm-ID: 215629 [Multi-domain] Cd Length: 2102 Bit Score: 47.02 E-value: 1.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1372 FALEEIRSEE----AVSPLILVLKDENYTVRYLAVEAL------GYIRSEE----AVKPLVLALSDKSNLVRESAVEALG 1437
Cdd:PLN03200 1219 FSSPELRRHEsafgAVNQLVAVLRLGSRSARYSAARALqelfsaEHIRDSElarqAVQPLVEMLNTGSESEQHAAIGALI 1298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1438 YIRSEEAVNSLILVLKDENA------------DREVRESAARALG------KIRNEEA----VQPLILALEDEDKDMRIA 1495
Cdd:PLN03200 1299 KLSSGNPSKALAIADVEGNAlenlckilssdsSLELKEDAAELCRvlftntRIRSTPAaarcIEPLISLLVSESSTAQEA 1378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1496 VTEALGEIKTEE----------AVNPLILVLNDNNEEVRERAVFALEKIGS--------LEKMGGEEAV--QLLEAEKGF 1555
Cdd:PLN03200 1379 GVCALDRLLDDEqlaelvaahgAVVPLVGLVVGTNYVLHEAAISALIKLGKdrppckldMVKAGIIERVldILPEAPDSL 1458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1556 EKIG---------------DQETVKRLIQLFVS-----NKYSGQHGARTIAAETLR--------NIEDQEALTPLILFLK 1607
Cdd:PLN03200 1459 CSAIaellriltnnssiakGQSAAKVVEPLFLLltrpdLGTWGQHSALQALVNILEkpqclaslTLTPSQAIEPLIPLLE 1538
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 1371146644 1608 EEDNMLRQTAADGLGRTRSEE----------AVRPLILALKDEDNLVRESAAEALESI 1655
Cdd:PLN03200 1539 SPSQAVQQLAAELLSHLLAEEhfqqdittqnAVVPLVRLAGIGILSLQQRAVKALESI 1596
|
|
| PLN03200 |
PLN03200 |
cellulose synthase-interactive protein; Provisional |
934-1436 |
1.47e-04 |
|
cellulose synthase-interactive protein; Provisional
Pssm-ID: 215629 [Multi-domain] Cd Length: 2102 Bit Score: 47.02 E-value: 1.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 934 LLIMAMKHED-KNVREKASEALEKKgseeeFSPLIIALKDENKDVrKRAVIALEKIGGEKVVQPLIIALKDedkyVRRRA 1012
Cdd:PLN03200 366 ILVKLLKPRDtKLVQERIIEALASL-----YGNAYLSRKLNHAEA-KKVLVGLITMATADVQEELIRALSS----LCCGK 435
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1013 VFALERIRSEKAVQSLT--LALKDEDKyvrQRAVIALEKIGSEKVvqpliialkDEDKYvrrrAVFALGNIggkeavQPL 1090
Cdd:PLN03200 436 GGLWEALGGREGVQLLIslLGLSSEQQ---QEYAVALLAILTDEV---------DESKW----AITAAGGI------PPL 493
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1091 IVALKDEDKDVRKKAAEALGK-----------IGSEEAVQSLIFAFKNQGMELQKKAAEALGKIgseeaVQSLIFAVKDQ 1159
Cdd:PLN03200 494 VQLLETGSQKAKEDSATVLWNlcchsediracVESAGAVPALLWLLKNGGPKGQEIAAKTLTKL-----VRTADAATISQ 568
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1160 VMEL-QKKAAVSNIQRLkikEVVKCLiialekirseeavqsltLALNYEDKNVRKTAAETlghienkEAFHLLIVALKDE 1238
Cdd:PLN03200 569 LTALlLGDLPESKVHVL---DVLGHV-----------------LSVASLEDLVREGSAAN-------DALRTLIQLLSSS 621
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1239 NKEVRSSAAEAL-----------GHIGSGEAVQPLTLALKDEDKDVRKSAAEALGEIRS------------EEVVHPLIL 1295
Cdd:PLN03200 622 KEETQEKAASVLadifssrqdlcESLATDEIINPCIKLLTNNTEAVATQSARALAALSRsikenrkvsyaaEDAIKPLIK 701
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1296 ALKDEDKDVRERAVFTLGGIRSkeavqpltlaskdeDKHVRERAVfalgeirSEEVVKPLTLALKDEDKDVRKKAVFAL- 1374
Cdd:PLN03200 702 LAKSSSIEVAEQAVCALANLLS--------------DPEVAAEAL-------AEDIILPLTRVLREGTLEGKRNAARALa 760
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1375 -------------EEIRSEEAVSPLILVLK----DENYTVRYLAVEAL--------GYIRSEEAV--------KPLVLAL 1421
Cdd:PLN03200 761 qllkhfpvddvlkDSVQCRGTVLALVDLLNstdlDSSATSEALEALALlartkggaNFSHPPWAVlaevpsslEPLVRCL 840
|
570
....*....|....*
gi 1371146644 1422 SDKSNLVRESAVEAL 1436
Cdd:PLN03200 841 AEGHPLVQDKAIEIL 855
|
|
| HEAT_EZ |
pfam13513 |
HEAT-like repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats ... |
1334-1377 |
2.48e-04 |
|
HEAT-like repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role.
Pssm-ID: 463906 [Multi-domain] Cd Length: 55 Bit Score: 40.43 E-value: 2.48e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 1371146644 1334 HVRERAVFALGEIRS----------EEVVKPLTLALKDEDKDVRKKAVFALEEI 1377
Cdd:pfam13513 2 RVREAAALALGSLAEggpdllapavPELLPALLPLLNDDSDLVREAAAWALGRL 55
|
|
| EZ_HEAT |
smart00567 |
E-Z type HEAT repeats; Present in subunits of cyanobacterial phycocyanin lyase, and other ... |
1242-1269 |
3.19e-04 |
|
E-Z type HEAT repeats; Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Pssm-ID: 128837 [Multi-domain] Cd Length: 30 Bit Score: 39.32 E-value: 3.19e-04
10 20
....*....|....*....|....*...
gi 1371146644 1242 VRSSAAEALGHIGSGEAVQPLTLALKDE 1269
Cdd:smart00567 3 VRHEAAFALGQLGDEEAVPALIKALEDE 30
|
|
| EZ_HEAT |
smart00567 |
E-Z type HEAT repeats; Present in subunits of cyanobacterial phycocyanin lyase, and other ... |
1334-1362 |
4.16e-04 |
|
E-Z type HEAT repeats; Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Pssm-ID: 128837 [Multi-domain] Cd Length: 30 Bit Score: 38.94 E-value: 4.16e-04
10 20
....*....|....*....|....*....
gi 1371146644 1334 HVRERAVFALGEIRSEEVVKPLTLALKDE 1362
Cdd:smart00567 2 LVRHEAAFALGQLGDEEAVPALIKALEDE 30
|
|
| HEAT_EZ |
pfam13513 |
HEAT-like repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats ... |
1273-1313 |
4.90e-04 |
|
HEAT-like repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role.
Pssm-ID: 463906 [Multi-domain] Cd Length: 55 Bit Score: 39.66 E-value: 4.90e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 1371146644 1273 VRKSAAEALGEIRS----------EEVVHPLILALKDEDKDVRERAVFTLG 1313
Cdd:pfam13513 3 VREAAALALGSLAEggpdllapavPELLPALLPLLNDDSDLVREAAAWALG 53
|
|
| HEAT_EZ |
pfam13513 |
HEAT-like repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats ... |
1460-1534 |
5.19e-04 |
|
HEAT-like repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role.
Pssm-ID: 463906 [Multi-domain] Cd Length: 55 Bit Score: 39.66 E-value: 5.19e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1371146644 1460 EVRESAARALGKIRNEEAVQplilalededkdMRIAVTEALGeikteeavnPLILVLNDNNEEVRERAVFALEKI 1534
Cdd:pfam13513 2 RVREAAALALGSLAEGGPDL------------LAPAVPELLP---------ALLPLLNDDSDLVREAAAWALGRL 55
|
|
| SEC21 |
COG5240 |
Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]; |
1331-1500 |
7.32e-04 |
|
Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion];
Pssm-ID: 227565 [Multi-domain] Cd Length: 898 Bit Score: 44.60 E-value: 7.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1331 EDKHVRERAVFALGE--------IRSEEVVKPLTLALKDEDKDVRKKAVFALEEIRSEEAVSPLIlvLKDENYTVRYLAV 1402
Cdd:COG5240 499 ENNIVRSAAVQALSKfalnisdvVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRLSDACEPLF--SSDELGDIPSLEL 576
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1403 EALGYIRSEE--------AVKPLVLALSDKSNLVRESAVEALGYIRS--EEAVNSLI-LVLKDENADREVRESAARALGK 1471
Cdd:COG5240 577 ELIGYISEDSfatafdvnQVRKFTEDEMKAINLKRKKSETTLDTTESvpKEDANSKAdPNIKTKYADELLSIEQIKPFGQ 656
|
170 180
....*....|....*....|....*....
gi 1371146644 1472 IRNeeAVQPLILAleDEDKDMRIAVTEAL 1500
Cdd:COG5240 657 LVN--SSREIILT--EPEAEFVVKVVKHV 681
|
|
| HEAT_EZ |
pfam13513 |
HEAT-like repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats ... |
1241-1284 |
7.47e-04 |
|
HEAT-like repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role.
Pssm-ID: 463906 [Multi-domain] Cd Length: 55 Bit Score: 39.27 E-value: 7.47e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 1371146644 1241 EVRSSAAEALGHIGSG----------EAVQPLTLALKDEDKDVRKSAAEALGEI 1284
Cdd:pfam13513 2 RVREAAALALGSLAEGgpdllapavpELLPALLPLLNDDSDLVREAAAWALGRL 55
|
|
| Adaptin_N |
pfam01602 |
Adaptin N terminal region; This family consists of the N terminal region of various alpha, ... |
1393-1669 |
7.74e-04 |
|
Adaptin N terminal region; This family consists of the N terminal region of various alpha, beta and gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein complexes. The adaptor protein (AP) complexes are involved in the formation of clathrin-coated pits and vesicles. The N-terminal region of the various adaptor proteins (APs) is constant by comparison to the C-terminal which is variable within members of the AP-2 family; and it has been proposed that this constant region interacts with another uniform component of the coated vesicles.
Pssm-ID: 396262 [Multi-domain] Cd Length: 523 Bit Score: 44.15 E-value: 7.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1393 ENYTVR---YLAVEALGYIRSEEA---VKPLVLALSDKSNLVRESAVEALGYIRSEEAVNSLILVLKDENADRE--VRES 1464
Cdd:pfam01602 54 KDFTLKrlgYLYLMLLAEESPDLAilvTNSIQKDLQSPNQLIRGLALRTLSCIRVPELARDLAPDIKKLLVDRSpyVRKK 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1465 AARALGKI--RNEEAVQPLILALED--EDKDMRI--AVTEALGEIK-----TEEAVNPLILVLNDNNEEVRERA-VFALE 1532
Cdd:pfam01602 134 AALAILKLyrKSPDLVRDFVPELKEllSDKDPGVqsAAVALLYEICkndrlYLKLLPLLFRRLCNLLGVLNPWLqVKILR 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1533 KIGSLEKMGGEEAVQLLEaekgfekigdqeTVKRLIQLfVSN--KYSGqhgARTIAAETLRNIEDQEALTPLILFLKEED 1610
Cdd:pfam01602 214 LLTRLAPLDPLLPKELLE------------DLLNLLQN-SNNavLYET---ANTIVHLAPAPELIVLAVNALGRLLSSPD 277
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1371146644 1611 NMLRQTAADGLGR--TRSEEAVRPL---ILALKDEDNL-VRESAAEALESIGSEGAVKPLLLALK 1669
Cdd:pfam01602 278 ENLRYVALRNLNKivMKEPKAVQHLdliIFCLKTDDDIsIRLRALDLLYALVNESNVKEIVKELL 342
|
|
| EZ_HEAT |
smart00567 |
E-Z type HEAT repeats; Present in subunits of cyanobacterial phycocyanin lyase, and other ... |
1007-1035 |
8.19e-04 |
|
E-Z type HEAT repeats; Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Pssm-ID: 128837 [Multi-domain] Cd Length: 30 Bit Score: 38.17 E-value: 8.19e-04
10 20
....*....|....*....|....*....
gi 1371146644 1007 YVRRRAVFALERIRSEKAVQSLTLALKDE 1035
Cdd:smart00567 2 LVRHEAAFALGQLGDEEAVPALIKALEDE 30
|
|
| HEAT_EZ |
pfam13513 |
HEAT-like repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats ... |
1210-1253 |
9.65e-04 |
|
HEAT-like repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role.
Pssm-ID: 463906 [Multi-domain] Cd Length: 55 Bit Score: 38.89 E-value: 9.65e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 1371146644 1210 NVRKTAAETLGHIEN----------KEAFHLLIVALKDENKEVRSSAAEALGHI 1253
Cdd:pfam13513 2 RVREAAALALGSLAEggpdllapavPELLPALLPLLNDDSDLVREAAAWALGRL 55
|
|
| PLN03200 |
PLN03200 |
cellulose synthase-interactive protein; Provisional |
1183-1661 |
1.04e-03 |
|
cellulose synthase-interactive protein; Provisional
Pssm-ID: 215629 [Multi-domain] Cd Length: 2102 Bit Score: 43.94 E-value: 1.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1183 CLIIALE----KIRSEEAVQSLTLALNYE-DKNVRKTAAETLGHI--ENKEA---------FHLLIVALKDENKEV---- 1242
Cdd:PLN03200 215 RLMMAFEssisKVLDAGAVKQLLKLLGQGnEVSVRAEAAGALEALssQSKEAkqaiadaggIPALINATVAPSKEFmqge 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1243 -----RSSAAEALGHIGSGEAVQPLTLALKDEDKDVRKSAAEALGEI-----------RSEEVVHP------LILALKDE 1300
Cdd:PLN03200 295 faqalQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALayalmvfdssaESTRAFDPtvieqiLVKLLKPR 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1301 D-KDVRERAVFTLGGIRSKeAVQPLTLASKDEDKHVRERAVFALGEIRsEEVVKPLTLALKDEdkdvrkkaVFALEEIRS 1379
Cdd:PLN03200 375 DtKLVQERIIEALASLYGN-AYLSRKLNHAEAKKVLVGLITMATADVQ-EELIRALSSLCCGK--------GGLWEALGG 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1380 EEAVSPLILVL-----KDENYTVRYLAV------EALGYIRSEEAVKPLVLALSDKSNLVRESAVEALGY-------IR- 1440
Cdd:PLN03200 445 REGVQLLISLLglsseQQQEYAVALLAIltdevdESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNlcchsedIRa 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1441 ---SEEAVNSLILVLKdeNADREVRESAARALGK-IRNEEAV---QPLILALEDEDKDmRIAVTEALG---------EIK 1504
Cdd:PLN03200 525 cveSAGAVPALLWLLK--NGGPKGQEIAAKTLTKlVRTADAAtisQLTALLLGDLPES-KVHVLDVLGhvlsvasleDLV 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1505 TE-----EAVNPLILVLNDNNEEVRERAVFALEKIGSLEK-MGGEEAVqlleaekgfekigdQETVKRLIQLFVSNKYSg 1578
Cdd:PLN03200 602 REgsaanDALRTLIQLLSSSKEETQEKAASVLADIFSSRQdLCESLAT--------------DEIINPCIKLLTNNTEA- 666
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1579 qhgartIAAETLRniedqeALTPLILFLKEEDNMlrqtaadglgRTRSEEAVRPLILALKDEDNLVRESAAEALESIGSE 1658
Cdd:PLN03200 667 ------VATQSAR------ALAALSRSIKENRKV----------SYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSD 724
|
...
gi 1371146644 1659 GAV 1661
Cdd:PLN03200 725 PEV 727
|
|
| Cnd1 |
pfam12717 |
non-SMC mitotic condensation complex subunit 1; The three non-SMC (structural maintenance of ... |
1396-1500 |
1.69e-03 |
|
non-SMC mitotic condensation complex subunit 1; The three non-SMC (structural maintenance of chromosomes) subunits of the mitotic condensation complex are Cnd1-3. The whole complex is essential for viability and the condensing of chromosomes in mitosis.
Pssm-ID: 463677 [Multi-domain] Cd Length: 162 Bit Score: 40.91 E-value: 1.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1396 TVRYLAVEALGYIRS----EEAVKPLVLALSDKSNLVRESAVEAL------GYIRSEEAVNSLILVLKDENAdrEVRESA 1465
Cdd:pfam12717 1 LIRALAIRTMGCIRFpnlvEYLTEPLYRRLKDEDPYVRKTAAMCVaklilpDMVKVKGFISELAKLLEDPNP--MVVANA 78
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1371146644 1466 ARALGKIR----------NEEAVQPLILALEDEDKDMRIAVTEAL 1500
Cdd:pfam12717 79 LAALTEISekdpnaiynlLPDIISKLSDALNECSEWGQIYILDFL 123
|
|
| EZ_HEAT |
smart00567 |
E-Z type HEAT repeats; Present in subunits of cyanobacterial phycocyanin lyase, and other ... |
1273-1300 |
1.80e-03 |
|
E-Z type HEAT repeats; Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Pssm-ID: 128837 [Multi-domain] Cd Length: 30 Bit Score: 37.40 E-value: 1.80e-03
10 20
....*....|....*....|....*...
gi 1371146644 1273 VRKSAAEALGEIRSEEVVHPLILALKDE 1300
Cdd:smart00567 3 VRHEAAFALGQLGDEEAVPALIKALEDE 30
|
|
| HEAT_PBS |
pfam03130 |
PBS lyase HEAT-like repeat; This family contains a short bi-helical repeat that is related to ... |
1273-1299 |
1.92e-03 |
|
PBS lyase HEAT-like repeat; This family contains a short bi-helical repeat that is related to pfam02985. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. This family includes the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/F lyase, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six). All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerization reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif.
Pssm-ID: 308641 [Multi-domain] Cd Length: 27 Bit Score: 37.07 E-value: 1.92e-03
10 20
....*....|....*....|....*..
gi 1371146644 1273 VRKSAAEALGEIRSEEVVHPLILALKD 1299
Cdd:pfam03130 1 VRRAAARALGALGDPEAIPALIEALDD 27
|
|
| HSH155 |
COG5181 |
U2 snRNP spliceosome subunit [RNA processing and modification]; |
974-1282 |
2.20e-03 |
|
U2 snRNP spliceosome subunit [RNA processing and modification];
Pssm-ID: 227508 [Multi-domain] Cd Length: 975 Bit Score: 43.01 E-value: 2.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 974 NKDVRKRAVIALEKIGGEKVVQPLIIALKDEDKYVRRRAVFALERIRSekAVQSLTLALKDEDKYVRQRAVIALEKIGSE 1053
Cdd:COG5181 503 YKQVVLTTVILAKMGGDPRVSRKILEYYSDEPEPYRKMNAGLVSRIFS--RLGRLGFDERLEERLYDSILNAFQEQDTTV 580
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1054 KVVQPLIIALkdedkyvrrraVFALGnIGGKEAVQPLIVA----LKDEDKDVRKKAAEALGkigseeavqSLIFAFKNQG 1129
Cdd:COG5181 581 GLILPCFSTV-----------LVSLE-FRGKPHLSMIVSTilklLRSKPPDVRIRAADLMG---------SLAKVLKACG 639
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1130 M--ELQKKAAEALGKIGSE--EAVQSLIFAVKdqvmelqkkaAVSNIQRL-KIKEVVKCLIIALEKI-RS-EEAVQSLTL 1202
Cdd:COG5181 640 EtkELAKLGNILYENLGEDypEVLGSILKAIC----------SIYSVHRFrSMQPPISGILPSLTPIlRNkHQKVVANTI 709
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1203 ALNYEdknVRKTAAETLGHIENKEAFHLLIVALKDENKEVRSSAAEALGHI----GSGEAVQPLTLALKDEDKDVRKSAA 1278
Cdd:COG5181 710 ALVGT---ICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCIsraiGPQDVLDILLNNLKVQERQQRVCTS 786
|
....
gi 1371146644 1279 EALG 1282
Cdd:COG5181 787 VAIS 790
|
|
| EZ_HEAT |
smart00567 |
E-Z type HEAT repeats; Present in subunits of cyanobacterial phycocyanin lyase, and other ... |
1101-1128 |
2.28e-03 |
|
E-Z type HEAT repeats; Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Pssm-ID: 128837 [Multi-domain] Cd Length: 30 Bit Score: 37.01 E-value: 2.28e-03
10 20
....*....|....*....|....*...
gi 1371146644 1101 VRKKAAEALGKIGSEEAVQSLIFAFKNQ 1128
Cdd:smart00567 3 VRHEAAFALGQLGDEEAVPALIKALEDE 30
|
|
| HEAT_EZ |
pfam13513 |
HEAT-like repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats ... |
1304-1346 |
2.44e-03 |
|
HEAT-like repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role.
Pssm-ID: 463906 [Multi-domain] Cd Length: 55 Bit Score: 37.73 E-value: 2.44e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 1371146644 1304 VRERAVFTLGGIRS----------KEAVQPLTLASKDEDKHVRERAVFALGEI 1346
Cdd:pfam13513 3 VREAAALALGSLAEggpdllapavPELLPALLPLLNDDSDLVREAAAWALGRL 55
|
|
| Cnd1 |
pfam12717 |
non-SMC mitotic condensation complex subunit 1; The three non-SMC (structural maintenance of ... |
977-1050 |
2.73e-03 |
|
non-SMC mitotic condensation complex subunit 1; The three non-SMC (structural maintenance of chromosomes) subunits of the mitotic condensation complex are Cnd1-3. The whole complex is essential for viability and the condensing of chromosomes in mitosis.
Pssm-ID: 463677 [Multi-domain] Cd Length: 162 Bit Score: 40.14 E-value: 2.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 977 VRKRAVIALEKIGGEKVVQPLII----ALKDEDKYVRRRAVFAL------ERIRSEKAVQSLTLALKDEDKYVRQRAVIA 1046
Cdd:pfam12717 2 IRALAIRTMGCIRFPNLVEYLTEplyrRLKDEDPYVRKTAAMCVaklilpDMVKVKGFISELAKLLEDPNPMVVANALAA 81
|
....
gi 1371146644 1047 LEKI 1050
Cdd:pfam12717 82 LTEI 85
|
|
| SEC21 |
COG5240 |
Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]; |
1035-1120 |
2.98e-03 |
|
Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion];
Pssm-ID: 227565 [Multi-domain] Cd Length: 898 Bit Score: 42.29 E-value: 2.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1035 EDKYVRQRAVIALEKIG---SEKVVQPLIIA-----LKDEDKYVRRRAVFALGNIGGKEAVQPLIVAlkDEDKDVRKKAA 1106
Cdd:COG5240 499 ENNIVRSAAVQALSKFAlniSDVVSPQSVENalkrcLNDQDDEVRDRASFLLRNMRLSDACEPLFSS--DELGDIPSLEL 576
|
90
....*....|....
gi 1371146644 1107 EALGKIGSEEAVQS 1120
Cdd:COG5240 577 ELIGYISEDSFATA 590
|
|
| EZ_HEAT |
smart00567 |
E-Z type HEAT repeats; Present in subunits of cyanobacterial phycocyanin lyase, and other ... |
1366-1393 |
3.06e-03 |
|
E-Z type HEAT repeats; Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Pssm-ID: 128837 [Multi-domain] Cd Length: 30 Bit Score: 36.62 E-value: 3.06e-03
10 20
....*....|....*....|....*...
gi 1371146644 1366 VRKKAVFALEEIRSEEAVSPLILVLKDE 1393
Cdd:smart00567 3 VRHEAAFALGQLGDEEAVPALIKALEDE 30
|
|
| PRK09687 |
PRK09687 |
putative lyase; Provisional |
1058-1246 |
3.88e-03 |
|
putative lyase; Provisional
Pssm-ID: 170047 [Multi-domain] Cd Length: 280 Bit Score: 41.27 E-value: 3.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1058 PLIIALKDEDKYVRRRAVFALGNIGGKEAVQPLIVALKDEDKDVRKKAAEALGKIGSEEAVQSLIFAFKNQgMELQKKAA 1137
Cdd:PRK09687 27 ELFRLLDDHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNN-LALEDKSA 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1138 EALgkigsEEAVQSLIFAVKDQVMELQKKAAVSNIQRLKIKEVVKCLII-ALEKIRSEEAVQSLTLALNYEDKNVRKTAA 1216
Cdd:PRK09687 106 CVR-----ASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAfALSVINDEAAIPLLINLLKDPNGDVRNWAA 180
|
170 180 190
....*....|....*....|....*....|..
gi 1371146644 1217 ETLGHIE--NKEAFHLLIVALKDENKEVRSSA 1246
Cdd:PRK09687 181 FALNSNKydNPDIREAFVAMLQDKNEEIRIEA 212
|
|
| RPN2 |
COG5116 |
26S proteasome regulatory complex component [Posttranslational modification, protein turnover, ... |
1330-1439 |
4.10e-03 |
|
26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 227446 [Multi-domain] Cd Length: 926 Bit Score: 41.86 E-value: 4.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1330 DEDKHVRERAVFAL-----GEIRSEEVVKPLTLALKDEDKDVRKKAVFALEEIRSEE---AVSPLILVLKDENYTVRYLA 1401
Cdd:COG5116 527 DKDSILRYNGVFSLalayvGTGNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDrdlLVGTVELLSESHNFHVRAGV 606
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1371146644 1402 VEALGYIRSEEAVKPLVLALS----DKSNLVRESAVEALGYI 1439
Cdd:COG5116 607 AVALGIACAGTGDKVATDILEalmyDTNDFVRQSAMIAVGMI 648
|
|
| HEAT_PBS |
pfam03130 |
PBS lyase HEAT-like repeat; This family contains a short bi-helical repeat that is related to ... |
1242-1268 |
4.17e-03 |
|
PBS lyase HEAT-like repeat; This family contains a short bi-helical repeat that is related to pfam02985. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. This family includes the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/F lyase, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six). All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerization reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif.
Pssm-ID: 308641 [Multi-domain] Cd Length: 27 Bit Score: 36.30 E-value: 4.17e-03
10 20
....*....|....*....|....*..
gi 1371146644 1242 VRSSAAEALGHIGSGEAVQPLTLALKD 1268
Cdd:pfam03130 1 VRRAAARALGALGDPEAIPALIEALDD 27
|
|
| CdiI_Ct-like |
cd20694 |
inhibitor (or immunity protein) of the contact-dependent growth inhibition (CDI) system of ... |
1227-1285 |
5.76e-03 |
|
inhibitor (or immunity protein) of the contact-dependent growth inhibition (CDI) system of Cupriavidus taiwanensis CdiI immunity protein and similar proteins; CDI toxins are expressed by gram-negative bacteria as part of a mechanism to inhibit the growth of neighboring cells. This model represents the inhibitor (CdiI, also called CdiI immunity protein) of the CdiA effector protein from Cupriavidus taiwanensis, and similar proteins. CdiA secretion is dependent on the outer membrane protein CdiB. Upon binding to a receptor on the surface of target bacteria, the CDI toxin is delivered via its C-terminal domain (CdiA-CT). The CdiI immunity proteins are intracellular proteins that inactivate the toxin/effector protein to prevent auto-inhibition. They are specific for their cognate CdiA-CT and do not protect cells from the toxins of other CDI+ bacteria. Thus, CDI systems encode a complex network of toxin-immunity protein pairs that are deployed for intercellular competition. This C. taiwanensis CdiI is alpha-helical and binds its cognate toxin CdiA-CT domain with high affinity.
Pssm-ID: 412048 [Multi-domain] Cd Length: 96 Bit Score: 37.92 E-value: 5.76e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1371146644 1227 AFHLLIVALKDENKEVRSSAAEALGHIG------SGEAVQPLTLALKDEDKDVRKSAAEALGEIR 1285
Cdd:cd20694 30 VQDICLRLLEHPDPDVRGLAITCLGHLArihgklDKDRVLPALEALLSDPPDVRGRAEDALDDIE 94
|
|
| Cnd1 |
pfam12717 |
non-SMC mitotic condensation complex subunit 1; The three non-SMC (structural maintenance of ... |
1335-1408 |
6.08e-03 |
|
non-SMC mitotic condensation complex subunit 1; The three non-SMC (structural maintenance of chromosomes) subunits of the mitotic condensation complex are Cnd1-3. The whole complex is essential for viability and the condensing of chromosomes in mitosis.
Pssm-ID: 463677 [Multi-domain] Cd Length: 162 Bit Score: 39.37 E-value: 6.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1335 VRERAVFALGEIRSEEVV----KPLTLALKDEDKDVRKKAVFAL------EEIRSEEAVSPLILVLKDENYTVRYLAVEA 1404
Cdd:pfam12717 2 IRALAIRTMGCIRFPNLVeyltEPLYRRLKDEDPYVRKTAAMCVaklilpDMVKVKGFISELAKLLEDPNPMVVANALAA 81
|
....
gi 1371146644 1405 LGYI 1408
Cdd:pfam12717 82 LTEI 85
|
|
| EZ_HEAT |
smart00567 |
E-Z type HEAT repeats; Present in subunits of cyanobacterial phycocyanin lyase, and other ... |
1643-1670 |
7.41e-03 |
|
E-Z type HEAT repeats; Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Pssm-ID: 128837 [Multi-domain] Cd Length: 30 Bit Score: 35.47 E-value: 7.41e-03
10 20
....*....|....*....|....*...
gi 1371146644 1643 LVRESAAEALESIGSEGAVKPLLLALKD 1670
Cdd:smart00567 2 LVRHEAAFALGQLGDEEAVPALIKALED 29
|
|
| HEAT_EZ |
pfam13513 |
HEAT-like repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats ... |
1428-1472 |
7.79e-03 |
|
HEAT-like repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role.
Pssm-ID: 463906 [Multi-domain] Cd Length: 55 Bit Score: 36.19 E-value: 7.79e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 1371146644 1428 VRESAVEALGYIRS----------EEAVNSLILVLKDENAdrEVRESAARALGKI 1472
Cdd:pfam13513 3 VREAAALALGSLAEggpdllapavPELLPALLPLLNDDSD--LVREAAAWALGRL 55
|
|
| Cnd1 |
pfam12717 |
non-SMC mitotic condensation complex subunit 1; The three non-SMC (structural maintenance of ... |
1304-1377 |
7.83e-03 |
|
non-SMC mitotic condensation complex subunit 1; The three non-SMC (structural maintenance of chromosomes) subunits of the mitotic condensation complex are Cnd1-3. The whole complex is essential for viability and the condensing of chromosomes in mitosis.
Pssm-ID: 463677 [Multi-domain] Cd Length: 162 Bit Score: 38.98 E-value: 7.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371146644 1304 VRERAVFTLGGIRSK----EAVQPLTLASKDEDKHVRERAVFAL------GEIRSEEVVKPLTLALKDEDKDVRKKAVFA 1373
Cdd:pfam12717 2 IRALAIRTMGCIRFPnlveYLTEPLYRRLKDEDPYVRKTAAMCVaklilpDMVKVKGFISELAKLLEDPNPMVVANALAA 81
|
....
gi 1371146644 1374 LEEI 1377
Cdd:pfam12717 82 LTEI 85
|
|
| |
