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Conserved domains on  [gi|1366146245|gb|PSH81574|]
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CDP-glycerol glycerophosphotransferase family protein [Staphylococcus aureus]

Protein Classification

CDP-glycerol glycerophosphotransferase family protein( domain architecture ID 12052972)

CDP-glycerol glycerophosphotransferase family protein similar to Bacillus subtilis teichoic acid poly(glycerol phosphate) polymerase that catalyzes the addition of further 2-8 glycerol phosphate units from CDP-glycerol to the single glycerol phosphate unit bound to the prenolpyrophosphate-linked disaccharide

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Glyphos_transf pfam04464
CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase; Wall-associated teichoic acids ...
159-511 7.65e-120

CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase; Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerization of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid.


:

Pssm-ID: 398259  Cd Length: 360  Bit Score: 356.27  E-value: 7.65e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1366146245 159 KRSKTILFTSDSRPNLSGNFKYVYDELLRQkvDFDYDIQTVFKANITDRRKW------RDKFRLPYLLGKADYIFVDDFH 232
Cdd:pfam04464   2 LDPNLVLFESFWGRGYSDNPKAIYEYLREL--APGYRIVWVVKKDHSARLPKgvpvvvRNSFRYLYLLLRAKYLVSNSNF 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1366146245 233 PLiyTVRFRPSQEIIQVWHAVgAFKTVGFSRTGKKGG--PFIDSLNHRSYTKAYVSSETDIPFYAEAFGIREENVVPTGV 310
Cdd:pfam04464  80 PL--YVVKRKNQVYLQTWHGT-PLKHMGLDILEVPMAntGQNFLRNVDRWDYLISANPHSTNIFARAFNIDKERILETGY 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1366146245 311 PRTDVLFDEAYATqiKQEMEDELPIIKGKKVILFAPTFRGNGHG--TAHYPFFKIDFERLaRYCEKNNVVVLFKMHPFVK 388
Cdd:pfam04464 157 PRNDVLFNANNED--VQRIRERLGIPLGKKVILYAPTWRDDERGsiGSYRFELLIDLERL-AFALGNDYVILLKMHPLIQ 233
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1366146245 389 NRLNIsREHRQYFIDVSDYREVNDILFVTDLLISDYSSLIYEYAVFKKPMIFYAFDLEDYITTRDFYEPYELFVPGKIVQ 468
Cdd:pfam04464 234 NNIDI-FESSGYVVDVSDYEDVEDLLLASDILITDYSSVMFDYAVLDRPIIFYAYDLETYSATRGFYLDYESEAPGPVVE 312
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*..
gi 1366146245 469 SFDALMDALDN----EDYEVEKVVPFLDKHFKYQDGRSSERLVKDLF 511
Cdd:pfam04464 313 TFDELIDALKSgdwdDDYYARKRRAFRDRFCKYDDGRSSERVVRLIF 359
 
Name Accession Description Interval E-value
Glyphos_transf pfam04464
CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase; Wall-associated teichoic acids ...
159-511 7.65e-120

CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase; Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerization of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid.


Pssm-ID: 398259  Cd Length: 360  Bit Score: 356.27  E-value: 7.65e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1366146245 159 KRSKTILFTSDSRPNLSGNFKYVYDELLRQkvDFDYDIQTVFKANITDRRKW------RDKFRLPYLLGKADYIFVDDFH 232
Cdd:pfam04464   2 LDPNLVLFESFWGRGYSDNPKAIYEYLREL--APGYRIVWVVKKDHSARLPKgvpvvvRNSFRYLYLLLRAKYLVSNSNF 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1366146245 233 PLiyTVRFRPSQEIIQVWHAVgAFKTVGFSRTGKKGG--PFIDSLNHRSYTKAYVSSETDIPFYAEAFGIREENVVPTGV 310
Cdd:pfam04464  80 PL--YVVKRKNQVYLQTWHGT-PLKHMGLDILEVPMAntGQNFLRNVDRWDYLISANPHSTNIFARAFNIDKERILETGY 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1366146245 311 PRTDVLFDEAYATqiKQEMEDELPIIKGKKVILFAPTFRGNGHG--TAHYPFFKIDFERLaRYCEKNNVVVLFKMHPFVK 388
Cdd:pfam04464 157 PRNDVLFNANNED--VQRIRERLGIPLGKKVILYAPTWRDDERGsiGSYRFELLIDLERL-AFALGNDYVILLKMHPLIQ 233
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1366146245 389 NRLNIsREHRQYFIDVSDYREVNDILFVTDLLISDYSSLIYEYAVFKKPMIFYAFDLEDYITTRDFYEPYELFVPGKIVQ 468
Cdd:pfam04464 234 NNIDI-FESSGYVVDVSDYEDVEDLLLASDILITDYSSVMFDYAVLDRPIIFYAYDLETYSATRGFYLDYESEAPGPVVE 312
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*..
gi 1366146245 469 SFDALMDALDN----EDYEVEKVVPFLDKHFKYQDGRSSERLVKDLF 511
Cdd:pfam04464 313 TFDELIDALKSgdwdDDYYARKRRAFRDRFCKYDDGRSSERVVRLIF 359
TagB COG1887
CDP-glycerol glycerophosphotransferase, TagB/SpsB family [Cell wall/membrane/envelope ...
144-508 1.41e-98

CDP-glycerol glycerophosphotransferase, TagB/SpsB family [Cell wall/membrane/envelope biogenesis, Lipid transport and metabolism];


Pssm-ID: 441491  Cd Length: 369  Bit Score: 301.91  E-value: 1.41e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1366146245 144 FLFKAIFNITKLLHIKRsKTILFTSDSRPNLSGNFKYVYDELLRQKVDFDY------DIQTVFKANITDRRKWRDKFRlp 217
Cdd:COG1887     5 LLRRLYYRLSRLLPVKK-NIILFESRNGRSYSDNPKALFEYLRKNHPDYEVvwvvddDSKRLPKEGVKVVKRGSLKYL-- 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1366146245 218 YLLGKADYIFVDDFHPLIYTVRFRPSQEIIQVWHAVgAFKTVGFSRTGKKGGPFIdsLNHRSYTKAYVSSETDIPFYAEA 297
Cdd:COG1887    82 YALARAKYLVSNHYFPFPSYFRKRKGQKYVQLWHGT-PLKKIGLDDPPRYLKRVL--REYRNWDYLLSSSEESTEIFRRA 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1366146245 298 FGIREENVVPTGVPRTDVLFDEAYAtQIKQEMEDELPIIKGKKVILFAPTFRGNGHGTAhyPFFKIDFERLARYCEKNnV 377
Cdd:COG1887   159 FGYPEGEVLETGYPRNDVLFDADRE-ELREELRERLGIPEDKKVILYAPTWRDDEDNFD--DYLDLDLERLAELLGDD-Y 234
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1366146245 378 VVLFKMHPFVKNRLNISREHRqyFIDVSDYREVNDILFVTDLLISDYSSLIYEYAVFKKPMIFYAFDLEDYITTRDFYEP 457
Cdd:COG1887   235 VLLVRLHPFVKDSLDEKYSDR--IIDVSDYPDINDLLLASDVLITDYSSVMFDFALLDRPIIFYAYDLEEYRDERGFYFD 312
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1366146245 458 YELFVPGKIVQSFDALMDAL----DNEDYEVEKVVPFLDKHFKYQDGRSSERLVK 508
Cdd:COG1887   313 YEEDAPGPVVTTFEELIDAIedilENGDEYAEKYKAFRERFFPYDDGNASERVVD 367
GTB_UDP-GlcNAc_2-Epimerase cd03786
UDP-N-acetylglucosamine 2-epimerase and similar proteins; Bacterial members of the ...
299-508 1.40e-05

UDP-N-acetylglucosamine 2-epimerase and similar proteins; Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family (EC 5.1.3.14) are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.


Pssm-ID: 340819 [Multi-domain]  Cd Length: 365  Bit Score: 47.20  E-value: 1.40e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1366146245 299 GIREENVVPTGVPRTDVLFDeaYATQIKQEMEDELPIIKGKKVILFaptfrgnghgTAHyPFFKID--------FERLAR 370
Cdd:cd03786   160 GEPPERIFVTGNTVIDALLS--AALRIRDELVLSKLGLLEKKYILV----------TLH-RRENVDsgerleelLEALEE 226
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1366146245 371 YCEKNNVVVLFKMHPFVKNRL------NISREHRQYFIDVSDYREVNDILFVTDLLISDYSSLIYEYAVFKKPMifyafd 444
Cdd:cd03786   227 LAEKYDLIVVYPNHPRTRPRIrevglkFLGGLPNIRLIDPLGYLDLVLLKKRAKLVLTDSGGIQEEASFLGKPV------ 300
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1366146245 445 ledyITTRDFYEPYEL----------FVPGKIVQSFDALMDalDNEDYEVEKVVPFldkhfkYQDGRSSERLVK 508
Cdd:cd03786   301 ----LVLRDRTERPERveagtnvlvgTDPEAILEAIEKLLS--DEFEYSRMSAINP------YGDGNASERIVD 362
 
Name Accession Description Interval E-value
Glyphos_transf pfam04464
CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase; Wall-associated teichoic acids ...
159-511 7.65e-120

CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase; Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerization of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid.


Pssm-ID: 398259  Cd Length: 360  Bit Score: 356.27  E-value: 7.65e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1366146245 159 KRSKTILFTSDSRPNLSGNFKYVYDELLRQkvDFDYDIQTVFKANITDRRKW------RDKFRLPYLLGKADYIFVDDFH 232
Cdd:pfam04464   2 LDPNLVLFESFWGRGYSDNPKAIYEYLREL--APGYRIVWVVKKDHSARLPKgvpvvvRNSFRYLYLLLRAKYLVSNSNF 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1366146245 233 PLiyTVRFRPSQEIIQVWHAVgAFKTVGFSRTGKKGG--PFIDSLNHRSYTKAYVSSETDIPFYAEAFGIREENVVPTGV 310
Cdd:pfam04464  80 PL--YVVKRKNQVYLQTWHGT-PLKHMGLDILEVPMAntGQNFLRNVDRWDYLISANPHSTNIFARAFNIDKERILETGY 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1366146245 311 PRTDVLFDEAYATqiKQEMEDELPIIKGKKVILFAPTFRGNGHG--TAHYPFFKIDFERLaRYCEKNNVVVLFKMHPFVK 388
Cdd:pfam04464 157 PRNDVLFNANNED--VQRIRERLGIPLGKKVILYAPTWRDDERGsiGSYRFELLIDLERL-AFALGNDYVILLKMHPLIQ 233
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1366146245 389 NRLNIsREHRQYFIDVSDYREVNDILFVTDLLISDYSSLIYEYAVFKKPMIFYAFDLEDYITTRDFYEPYELFVPGKIVQ 468
Cdd:pfam04464 234 NNIDI-FESSGYVVDVSDYEDVEDLLLASDILITDYSSVMFDYAVLDRPIIFYAYDLETYSATRGFYLDYESEAPGPVVE 312
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*..
gi 1366146245 469 SFDALMDALDN----EDYEVEKVVPFLDKHFKYQDGRSSERLVKDLF 511
Cdd:pfam04464 313 TFDELIDALKSgdwdDDYYARKRRAFRDRFCKYDDGRSSERVVRLIF 359
TagB COG1887
CDP-glycerol glycerophosphotransferase, TagB/SpsB family [Cell wall/membrane/envelope ...
144-508 1.41e-98

CDP-glycerol glycerophosphotransferase, TagB/SpsB family [Cell wall/membrane/envelope biogenesis, Lipid transport and metabolism];


Pssm-ID: 441491  Cd Length: 369  Bit Score: 301.91  E-value: 1.41e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1366146245 144 FLFKAIFNITKLLHIKRsKTILFTSDSRPNLSGNFKYVYDELLRQKVDFDY------DIQTVFKANITDRRKWRDKFRlp 217
Cdd:COG1887     5 LLRRLYYRLSRLLPVKK-NIILFESRNGRSYSDNPKALFEYLRKNHPDYEVvwvvddDSKRLPKEGVKVVKRGSLKYL-- 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1366146245 218 YLLGKADYIFVDDFHPLIYTVRFRPSQEIIQVWHAVgAFKTVGFSRTGKKGGPFIdsLNHRSYTKAYVSSETDIPFYAEA 297
Cdd:COG1887    82 YALARAKYLVSNHYFPFPSYFRKRKGQKYVQLWHGT-PLKKIGLDDPPRYLKRVL--REYRNWDYLLSSSEESTEIFRRA 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1366146245 298 FGIREENVVPTGVPRTDVLFDEAYAtQIKQEMEDELPIIKGKKVILFAPTFRGNGHGTAhyPFFKIDFERLARYCEKNnV 377
Cdd:COG1887   159 FGYPEGEVLETGYPRNDVLFDADRE-ELREELRERLGIPEDKKVILYAPTWRDDEDNFD--DYLDLDLERLAELLGDD-Y 234
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1366146245 378 VVLFKMHPFVKNRLNISREHRqyFIDVSDYREVNDILFVTDLLISDYSSLIYEYAVFKKPMIFYAFDLEDYITTRDFYEP 457
Cdd:COG1887   235 VLLVRLHPFVKDSLDEKYSDR--IIDVSDYPDINDLLLASDVLITDYSSVMFDFALLDRPIIFYAYDLEEYRDERGFYFD 312
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1366146245 458 YELFVPGKIVQSFDALMDAL----DNEDYEVEKVVPFLDKHFKYQDGRSSERLVK 508
Cdd:COG1887   313 YEEDAPGPVVTTFEELIDAIedilENGDEYAEKYKAFRERFFPYDDGNASERVVD 367
GTB_UDP-GlcNAc_2-Epimerase cd03786
UDP-N-acetylglucosamine 2-epimerase and similar proteins; Bacterial members of the ...
299-508 1.40e-05

UDP-N-acetylglucosamine 2-epimerase and similar proteins; Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family (EC 5.1.3.14) are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.


Pssm-ID: 340819 [Multi-domain]  Cd Length: 365  Bit Score: 47.20  E-value: 1.40e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1366146245 299 GIREENVVPTGVPRTDVLFDeaYATQIKQEMEDELPIIKGKKVILFaptfrgnghgTAHyPFFKID--------FERLAR 370
Cdd:cd03786   160 GEPPERIFVTGNTVIDALLS--AALRIRDELVLSKLGLLEKKYILV----------TLH-RRENVDsgerleelLEALEE 226
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1366146245 371 YCEKNNVVVLFKMHPFVKNRL------NISREHRQYFIDVSDYREVNDILFVTDLLISDYSSLIYEYAVFKKPMifyafd 444
Cdd:cd03786   227 LAEKYDLIVVYPNHPRTRPRIrevglkFLGGLPNIRLIDPLGYLDLVLLKKRAKLVLTDSGGIQEEASFLGKPV------ 300
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1366146245 445 ledyITTRDFYEPYEL----------FVPGKIVQSFDALMDalDNEDYEVEKVVPFldkhfkYQDGRSSERLVK 508
Cdd:cd03786   301 ----LVLRDRTERPERveagtnvlvgTDPEAILEAIEKLLS--DEFEYSRMSAINP------YGDGNASERIVD 362
Epimerase_2 pfam02350
UDP-N-acetylglucosamine 2-epimerase; This family consists of UDP-N-acetylglucosamine ...
263-510 5.50e-03

UDP-N-acetylglucosamine 2-epimerase; This family consists of UDP-N-acetylglucosamine 2-epimerases EC:5.1.3.14 this enzyme catalyzes the production of UDP-ManNAc from UDP-GlcNAc. Note that some of the enzymes is this family are bifunctional such as Swiss:O35826 and Swiss:Q9Z0P6 in this instance Pfam matches only the N-terminal half of the protein suggesting that the additional C-terminal part (when compared to mono-functional members of this family) is responsible for the UPD-N-acetylmannosamine kinase activity of these enzymes. This hypothesis is further supported by the assumption that the C-terminal part of Swiss:O35826 is the kinase domain.


Pssm-ID: 426733 [Multi-domain]  Cd Length: 336  Bit Score: 39.05  E-value: 5.50e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1366146245 263 RTGKKGGPFIDSLNHRSYTKA----YVSSETdipfYAE---AFGIREENVVPTGVPRTDVLFDEayatqiKQEMEDELPI 335
Cdd:pfam02350 101 RSFDLTEPMPEEINRHAIDKLsdlhFAPTEE----AREnllQEGEPPERIFVTGNTVIDALLLS------REEIEERSGI 170
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1366146245 336 IK--GKKVILFapTF--RGN-GHGTAHYPFFKIdFERLArycEKNNVVVLFKMH--PFVKNRLN--ISREHRQYFIDVSD 406
Cdd:pfam02350 171 LAklGKRYVLV--TFhrRENeDDPEALRNILEA-LRALA---ERPDVPVVFPVHnnPRTRRRLNerLEGYPRVRLIEPLG 244
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1366146245 407 YREVNDILFVTDLLISDYSSLIYEYAVFKKPMifyafdledyITTRDFYEPYEL----------FVPGKIVQsfdALMDA 476
Cdd:pfam02350 245 YLDFLSLLKRADLVITDSGGIQEEAPSLGVPV----------VNLRDTTERPEGreagtnvlvgTDPERIVA---ALERL 311
                         250       260       270
                  ....*....|....*....|....*....|....
gi 1366146245 477 LDNEDyevEKVVPfldkhfkYQDGRSSERLVKDL 510
Cdd:pfam02350 312 LEDPA---SYKNP-------YGDGNASERIVDIL 335
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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