NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1361744443|emb|SPF31272|]
View 

flagellar biosynthesis protein [Syntrophobacter sp. SbD1]

Protein Classification

flagellar biosynthetic protein FliQ( domain architecture ID 10005065)

flagellar biosynthetic protein FliQ is required for the assembly of the rivet at the earliest stage of flagellar biosynthesis

Gene Ontology:  GO:0009425|GO:0005886|GO:0044780|GO:0009306

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
FliQ COG1987
Flagellar biosynthesis protein FliQ [Cell motility];
1-87 1.06e-30

Flagellar biosynthesis protein FliQ [Cell motility];


:

Pssm-ID: 441590  Cd Length: 88  Bit Score: 103.25  E-value: 1.06e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1361744443  1 MSYEFVISFGRHAVETMLLVSLPILGLSMIVGLIISIFQSVTQIQEMTLTFVPKIVITFLALLFFGSWMLGKLSDFLREV 80
Cdd:COG1987    1 MTPELVIDLGRQALWTALLLSAPLLLVALVVGLVISIFQAATQIQEQTLSFVPKLLAVLLVLLLLGPWMLSTLVDFTRRL 80


                 ....*..
gi 1361744443 81 IMTIPNI 87
Cdd:COG1987   81 FSRIPGL 87
 
Name Accession Description Interval E-value
FliQ COG1987
Flagellar biosynthesis protein FliQ [Cell motility];
1-87 1.06e-30

Flagellar biosynthesis protein FliQ [Cell motility];


Pssm-ID: 441590  Cd Length: 88  Bit Score: 103.25  E-value: 1.06e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1361744443  1 MSYEFVISFGRHAVETMLLVSLPILGLSMIVGLIISIFQSVTQIQEMTLTFVPKIVITFLALLFFGSWMLGKLSDFLREV 80
Cdd:COG1987    1 MTPELVIDLGRQALWTALLLSAPLLLVALVVGLVISIFQAATQIQEQTLSFVPKLLAVLLVLLLLGPWMLSTLVDFTRRL 80


                 ....*..
gi 1361744443 81 IMTIPNI 87
Cdd:COG1987   81 FSRIPGL 87
fliQ PRK05700
flagellar type III secretion system protein FliQ;
1-89 1.53e-24

flagellar type III secretion system protein FliQ;


Pssm-ID: 235567  Cd Length: 89  Bit Score: 87.98  E-value: 1.53e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1361744443  1 MSYEFVISFGRHAVETMLLVSLPILGLSMIVGLIISIFQSVTQIQEMTLTFVPKIVITFLALLFFGSWMLGKLSDFLREV 80
Cdd:PRK05700   1 MTPESVMDLFREAMKVALMLAAPLLLVALVVGLVVSIFQAATQINEQTLSFIPKILAVLLTLIIAGPWMLNTLLDYTRTL 80


                 ....*....
gi 1361744443 81 IMTIPNISG 89
Cdd:PRK05700  81 FSNIPTLIG 89
Bac_export_3 pfam01313
Bacterial export proteins, family 3; This family includes the following members; FliQ, MopD, ...
 7-78 2.37e-24

Bacterial export proteins, family 3; This family includes the following members; FliQ, MopD, HrcS, Hrp, YopS and SpaQ All of these members export proteins, that do not possess signal peptides, through the membrane. Although the proteins that these exporters move may be different, the exporters are thought to function in similar ways.


Pssm-ID: 460158  Cd Length: 72  Bit Score: 86.74  E-value: 2.37e-24
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1361744443  7 ISFGRHAVETMLLVSLPILGLSMIVGLIISIFQSVTQIQEMTLTFVPKIVITFLALLFFGSWMLGKLSDFLR 78
Cdd:pfam01313  1 IDLARQALWLVLLLSAPLLLVALVVGLVVSIFQAATQIQEQTLSFVPKLLAVLLVLLLLGPWMLQTLVDFTR 72
fliQ TIGR01402
flagellar biosynthetic protein FliQ; This model describes FliQ, a protein involved in ...
 1-87 1.19e-23

flagellar biosynthetic protein FliQ; This model describes FliQ, a protein involved in biosynthesis of bacterial flagella. A related family of proteins, excluded from this model, participates in bacterial type III protein secretion systems. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 130469  Cd Length: 88  Bit Score: 85.78  E-value: 1.19e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1361744443  1 MSYEFVISFGRHAVETMLLVSLPILGLSMIVGLIISIFQSVTQIQEMTLTFVPKIVITFLALLFFGSWMLGKLSDFLREV 80
Cdd:TIGR01402  1 MTEETVLDLGREAIWLTLLLSAPVLLVALVVGLVISIFQAATQIQEQTLSFIPKIIAILLALALLGPWMLTKLLDFTREI 80


                 ....*..
gi 1361744443 81 IMTIPNI 87
Cdd:TIGR01402 81 FQRIPQG 87
 
Name Accession Description Interval E-value
FliQ COG1987
Flagellar biosynthesis protein FliQ [Cell motility];
1-87 1.06e-30

Flagellar biosynthesis protein FliQ [Cell motility];


Pssm-ID: 441590  Cd Length: 88  Bit Score: 103.25  E-value: 1.06e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1361744443  1 MSYEFVISFGRHAVETMLLVSLPILGLSMIVGLIISIFQSVTQIQEMTLTFVPKIVITFLALLFFGSWMLGKLSDFLREV 80
Cdd:COG1987    1 MTPELVIDLGRQALWTALLLSAPLLLVALVVGLVISIFQAATQIQEQTLSFVPKLLAVLLVLLLLGPWMLSTLVDFTRRL 80


                 ....*..
gi 1361744443 81 IMTIPNI 87
Cdd:COG1987   81 FSRIPGL 87
fliQ PRK05700
flagellar type III secretion system protein FliQ;
1-89 1.53e-24

flagellar type III secretion system protein FliQ;


Pssm-ID: 235567  Cd Length: 89  Bit Score: 87.98  E-value: 1.53e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1361744443  1 MSYEFVISFGRHAVETMLLVSLPILGLSMIVGLIISIFQSVTQIQEMTLTFVPKIVITFLALLFFGSWMLGKLSDFLREV 80
Cdd:PRK05700   1 MTPESVMDLFREAMKVALMLAAPLLLVALVVGLVVSIFQAATQINEQTLSFIPKILAVLLTLIIAGPWMLNTLLDYTRTL 80


                 ....*....
gi 1361744443 81 IMTIPNISG 89
Cdd:PRK05700  81 FSNIPTLIG 89
Bac_export_3 pfam01313
Bacterial export proteins, family 3; This family includes the following members; FliQ, MopD, ...
 7-78 2.37e-24

Bacterial export proteins, family 3; This family includes the following members; FliQ, MopD, HrcS, Hrp, YopS and SpaQ All of these members export proteins, that do not possess signal peptides, through the membrane. Although the proteins that these exporters move may be different, the exporters are thought to function in similar ways.


Pssm-ID: 460158  Cd Length: 72  Bit Score: 86.74  E-value: 2.37e-24
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1361744443  7 ISFGRHAVETMLLVSLPILGLSMIVGLIISIFQSVTQIQEMTLTFVPKIVITFLALLFFGSWMLGKLSDFLR 78
Cdd:pfam01313  1 IDLARQALWLVLLLSAPLLLVALVVGLVVSIFQAATQIQEQTLSFVPKLLAVLLVLLLLGPWMLQTLVDFTR 72
fliQ TIGR01402
flagellar biosynthetic protein FliQ; This model describes FliQ, a protein involved in ...
 1-87 1.19e-23

flagellar biosynthetic protein FliQ; This model describes FliQ, a protein involved in biosynthesis of bacterial flagella. A related family of proteins, excluded from this model, participates in bacterial type III protein secretion systems. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 130469  Cd Length: 88  Bit Score: 85.78  E-value: 1.19e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1361744443  1 MSYEFVISFGRHAVETMLLVSLPILGLSMIVGLIISIFQSVTQIQEMTLTFVPKIVITFLALLFFGSWMLGKLSDFLREV 80
Cdd:TIGR01402  1 MTEETVLDLGREAIWLTLLLSAPVLLVALVVGLVISIFQAATQIQEQTLSFIPKIIAILLALALLGPWMLTKLLDFTREI 80


                 ....*..
gi 1361744443 81 IMTIPNI 87
Cdd:TIGR01402 81 FQRIPQG 87
fliQ PRK06010
flagellar biosynthesis protein FliQ; Reviewed
 6-80 1.01e-17

flagellar biosynthesis protein FliQ; Reviewed


Pssm-ID: 235671  Cd Length: 88  Bit Score: 70.41  E-value: 1.01e-17
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1361744443  6 VISFGRHAVETMLLVSLPILGLSMIVGLIISIFQSVTQIQEMTLTFVPKIVITFLALLFFGSWMLGKLSDFLREV 80
Cdd:PRK06010   6 ALDIVRDAIWTVLVASGPAVLAAMVVGVAIALFQALTQIQEMTLTFVPKIVAIFVTLLLTLPFMGAQISAFTLLI 80
EscS COG4794
Type III secretory pathway, EscS/YscS component [Intracellular trafficking, secretion, and ...
 1-87 1.51e-15

Type III secretory pathway, EscS/YscS component [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443822  Cd Length: 88  Bit Score: 64.87  E-value: 1.51e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1361744443  1 MSYEFVISFGRHAVETMLLVSLPILGLSMIVGLIISIFQSVTQIQEMTLTFVPKIVITFLALLFFGSWMLGKLSDFLREV 80
Cdd:COG4794    1 MNEADIIQLTSQALLLVLLLSLPPVLVAAVVGLLVSLLQAVTQLQDQTLPFGIKLIAVVLTLALTAPWLGAELLNFAEQI 80


                 ....*..
gi 1361744443 81 IMTIPNI 87
Cdd:COG4794   81 FDMFPAM 87
fliQ PRK12781
flagellar biosynthetic protein FliQ;
11-76 5.70e-12

flagellar biosynthetic protein FliQ;


Pssm-ID: 139219  Cd Length: 88  Bit Score: 56.00  E-value: 5.70e-12
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1361744443 11 RHAVETMLLVSLPILGLSMIVGLIISIFQSVTQIQEMTLTFVPKIVITFLALLFFGSWMLGKLSDF 76
Cdd:PRK12781  11 RAAIWTIIVASGPAVGAAMLVGIAIALLQALTQIQEVTLTFVPKIVVILIVMAVTGSFVGAQIYAF 76
fliQ_rel_III TIGR01403
type III secretion protein, HrpO family; This model represents one of several families of ...
 6-85 3.50e-10

type III secretion protein, HrpO family; This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FliQ. This model may not identify all type III secretion system FliQ homologs. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 130470  Cd Length: 81  Bit Score: 51.17  E-value: 3.50e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1361744443  6 VISFGRHAVETMLLVSLPILGLSMIVGLIISIFQSVTQIQEMTLTFVPKIVITFLALLFFGSWMLGKLSDFLREVIMTIP 85
Cdd:TIGR01403  2 IVQLTNQALLLVLILSLPPVLVAAIVGLLVSLLQALTQLQDQTLPFAIKLIAVFITLMLTAGWLGAEILNFANQIFTMIP 81
PRK15350 PRK15350
EscS/YscS/HrcS family type III secretion system export apparatus protein;
17-84 7.40e-06

EscS/YscS/HrcS family type III secretion system export apparatus protein;


Pssm-ID: 185248  Cd Length: 88  Bit Score: 40.36  E-value: 7.40e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1361744443 17 MLLVSLPILGLSMIVGLIISIFQSVTQIQEMTLTFVPKIVITFLALLFFGSWMLGKLSDFLREVIMTI 84
Cdd:PRK15350  17 VLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAITLMVSYPWLSGILLNYTRQIMLRI 84
PRK15333 PRK15333
EscS/YscS/HrcS family type III secretion system export apparatus protein;
10-81 1.56e-03

EscS/YscS/HrcS family type III secretion system export apparatus protein;


Pssm-ID: 185233  Cd Length: 86  Bit Score: 34.19  E-value: 1.56e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1361744443 10 GRHAVETMLLVSLPILGLSMIVGLIISIFQSVTQIQEMTLTFVPKIVITFLALLFFGSWMLGKLSDFLREVI 81
Cdd:PRK15333   8 GNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLSGWYGEVLLSYGRQVI 79
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH