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Conserved domains on  [gi|1359097711|gb|AVJ44260|]
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endopolygalacturonase [Enterococcus faecium]

Protein Classification

glycoside hydrolase family 28 protein( domain architecture ID 11475089)

glycoside hydrolase family 28 protein such as polygalacturonase that catalyzes the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans, and exo-poly-alpha-D-galacturonosidase which catalyzes the hydrolysis of pectic acid from the non-reducing end, releasing digalacturonate

CATH:  2.160.20.10
CAZY:  GH28
EC:  3.2.1.-
Gene Ontology:  GO:0005975|GO:0004553
PubMed:  17397864

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Pgu1 COG5434
Polygalacturonase [Carbohydrate transport and metabolism];
2-362 4.32e-172

Polygalacturonase [Carbohydrate transport and metabolism];


:

Pssm-ID: 444185 [Multi-domain]  Cd Length: 373  Bit Score: 487.02  E-value: 4.32e-172
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359097711   2 YDILTFGASID--ELNTEAIQQAIDAAASDGGGTVVVPAGEFLTGALFLKSNVELHLSAGAVLKFSDDPKDYPVVHSRWE 79
Cdd:COG5434    10 FNITDFGAKGDgkTLNTAAIQKAIDACAAAGGGTVLVPAGTYLTGPIFLKSNVTLHLEKGATLLGSTDPADYPLVETRWE 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359097711  80 GVHRKVYASCIYAQNVENISVTGFGTLDGNGKKWWHTFRNEPDNLAYP-------RPKLMSFHNCHRITVKDIKLIQSPS 152
Cdd:COG5434    90 GGELKGYSALIYAENAENIAITGEGTIDGNGDAWWPWKKEARQSGWVPvgaydylRPRLIQLKNCKNVLLEGVTLRNSPF 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359097711 153 WTINPILCSNATFDNLTILNPADSPNTDGIDPESCKNVRISNCHIDVGDDCIAIKAGT-EDTYERIACENITITNCTMVH 231
Cdd:COG5434   170 WTIHPLGCENVTVDGVTIDNPADAPNTDGIDPDSCRNVLIENCYIDTGDDAIAIKSGRdADGRRNRPTENIVIRNCTFRS 249

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359097711 232 GHGGVVLGSEMSGSIRNITISNCIFQETDRGIRLKSRRGRGGIVEDIRVSNIVMDNV-MCPFILNLYYFCGPRGkepyvw 310
Cdd:COG5434   250 GHGGIVIGSETSGGVRNVTVENCTFDGTDRGLRIKSRRGRGGVVENITIRNITMRNVkGTPIFINLFYEGDRGG------ 323

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1359097711 311 ekkaypideRTPAFRRIHFSNITARNVHaSAGFIYGLAEQFIQEITFDNIDV 362
Cdd:COG5434   324 ---------PTPTFRNITISNVTATGAK-SAILIAGLPEAPIENITLENVTI 365
 
Name Accession Description Interval E-value
Pgu1 COG5434
Polygalacturonase [Carbohydrate transport and metabolism];
2-362 4.32e-172

Polygalacturonase [Carbohydrate transport and metabolism];


Pssm-ID: 444185 [Multi-domain]  Cd Length: 373  Bit Score: 487.02  E-value: 4.32e-172
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359097711   2 YDILTFGASID--ELNTEAIQQAIDAAASDGGGTVVVPAGEFLTGALFLKSNVELHLSAGAVLKFSDDPKDYPVVHSRWE 79
Cdd:COG5434    10 FNITDFGAKGDgkTLNTAAIQKAIDACAAAGGGTVLVPAGTYLTGPIFLKSNVTLHLEKGATLLGSTDPADYPLVETRWE 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359097711  80 GVHRKVYASCIYAQNVENISVTGFGTLDGNGKKWWHTFRNEPDNLAYP-------RPKLMSFHNCHRITVKDIKLIQSPS 152
Cdd:COG5434    90 GGELKGYSALIYAENAENIAITGEGTIDGNGDAWWPWKKEARQSGWVPvgaydylRPRLIQLKNCKNVLLEGVTLRNSPF 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359097711 153 WTINPILCSNATFDNLTILNPADSPNTDGIDPESCKNVRISNCHIDVGDDCIAIKAGT-EDTYERIACENITITNCTMVH 231
Cdd:COG5434   170 WTIHPLGCENVTVDGVTIDNPADAPNTDGIDPDSCRNVLIENCYIDTGDDAIAIKSGRdADGRRNRPTENIVIRNCTFRS 249

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359097711 232 GHGGVVLGSEMSGSIRNITISNCIFQETDRGIRLKSRRGRGGIVEDIRVSNIVMDNV-MCPFILNLYYFCGPRGkepyvw 310
Cdd:COG5434   250 GHGGIVIGSETSGGVRNVTVENCTFDGTDRGLRIKSRRGRGGVVENITIRNITMRNVkGTPIFINLFYEGDRGG------ 323

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1359097711 311 ekkaypideRTPAFRRIHFSNITARNVHaSAGFIYGLAEQFIQEITFDNIDV 362
Cdd:COG5434   324 ---------PTPTFRNITISNVTATGAK-SAILIAGLPEAPIENITLENVTI 365
Glyco_hydro_28 pfam00295
Glycosyl hydrolases family 28; Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2. ...
 33-288 1.14e-41

Glycosyl hydrolases family 28; Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism.


Pssm-ID: 425588 [Multi-domain]  Cd Length: 319  Bit Score: 150.23  E-value: 1.14e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359097711  33 TVVVPAGeFLTGALFLKSNVELHLSAgaVLKFSDDPKDYPVvhsRWegvhrkvyascIYAQNVENISVTGfGTLDGNGKK 112
Cdd:pfam00295   6 QILVPAG-FTLDLTGLTSGTTVTFEG--TTTFGYKEWNGKL---IW-----------ISGSSITVTGASG-GTIDGQGQR 67

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359097711 113 WWH---TFRNEPDNLayprPKLMSFHNCHRITVKDIKLIQSPSWTINPILCSNATFDNLTILNPADS---PNTDGIDPES 186
Cdd:pfam00295  68 WWDgkgTKKNGGKKK----PKFIYIHKVKNSKITGLNIKNSPVFHFSVQSGTDLTISDITIDNSAGDsngHNTDGFDVGS 143

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359097711 187 CKNVRISNCHIDVGDDCIAIKAGTedtyeriaceNITITNCTMVHGHgGVVLGSEMSGS---IRNITISNCIFQETDRGI 263
Cdd:pfam00295 144 SSGVTISNTNIYNQDDCIAINSGS----------NISITNVTCGGGH-GISIGSVGGRSdntVKNVTVKDSTVVNSDNGV 212

                         250       260
                  ....*....|....*....|....*
gi 1359097711 264 RLKSRRGRGGIVEDIRVSNIVMDNV 288
Cdd:pfam00295 213 RIKTISGATGTVSNITYENIVLSNI 237
PLN02793 PLN02793
Probable polygalacturonase
 34-298 1.16e-34

Probable polygalacturonase


Pssm-ID: 215426 [Multi-domain]  Cd Length: 443  Bit Score: 134.24  E-value: 1.16e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359097711  34 VVVPAG-EFLTGALFL----KSNVELHLSAGAVLkfsddPKDyPVVhsrWEGVHRKVYascIYAQNVENISVTGFGTLDG 108
Cdd:PLN02793   88 IVIPAGyTFLVRPIDLggpcKAKLTLQISGTIIA-----PKD-PDV---WKGLNPRKW---LYFHGVNHLTVEGGGTVNG 155

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359097711 109 NGKKWW-HTFRNEPDNLAYPRPKLMSFHNCHRITVKDIKLIQSPSWTINPILCSNATFDNLTILNPADSPNTDGIDPESC 187
Cdd:PLN02793  156 MGHEWWaQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQQMHIAFTNCRRVTISGLKVIAPATSPNTDGIHISAS 235

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359097711 188 KNVRISNCHIDVGDDCIAIKAGTedtyERIACENITitnCTMVHGHGGVVLG-SEMSGSIRNITISNCIFQETDRGIRLK 266
Cdd:PLN02793  236 RGVVIKDSIVRTGDDCISIVGNS----SRIKIRNIA---CGPGHGISIGSLGkSNSWSEVRDITVDGAFLSNTDNGVRIK 308

                         250       260       270
                  ....*....|....*....|....*....|..
gi 1359097711 267 SRRGRGGIVEDIRVSNIVMDNVMCPFILNLYY 298
Cdd:PLN02793  309 TWQGGSGNASKITFQNIFMENVSNPIIIDQYY 340
 
Name Accession Description Interval E-value
Pgu1 COG5434
Polygalacturonase [Carbohydrate transport and metabolism];
2-362 4.32e-172

Polygalacturonase [Carbohydrate transport and metabolism];


Pssm-ID: 444185 [Multi-domain]  Cd Length: 373  Bit Score: 487.02  E-value: 4.32e-172
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359097711   2 YDILTFGASID--ELNTEAIQQAIDAAASDGGGTVVVPAGEFLTGALFLKSNVELHLSAGAVLKFSDDPKDYPVVHSRWE 79
Cdd:COG5434    10 FNITDFGAKGDgkTLNTAAIQKAIDACAAAGGGTVLVPAGTYLTGPIFLKSNVTLHLEKGATLLGSTDPADYPLVETRWE 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359097711  80 GVHRKVYASCIYAQNVENISVTGFGTLDGNGKKWWHTFRNEPDNLAYP-------RPKLMSFHNCHRITVKDIKLIQSPS 152
Cdd:COG5434    90 GGELKGYSALIYAENAENIAITGEGTIDGNGDAWWPWKKEARQSGWVPvgaydylRPRLIQLKNCKNVLLEGVTLRNSPF 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359097711 153 WTINPILCSNATFDNLTILNPADSPNTDGIDPESCKNVRISNCHIDVGDDCIAIKAGT-EDTYERIACENITITNCTMVH 231
Cdd:COG5434   170 WTIHPLGCENVTVDGVTIDNPADAPNTDGIDPDSCRNVLIENCYIDTGDDAIAIKSGRdADGRRNRPTENIVIRNCTFRS 249

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359097711 232 GHGGVVLGSEMSGSIRNITISNCIFQETDRGIRLKSRRGRGGIVEDIRVSNIVMDNV-MCPFILNLYYFCGPRGkepyvw 310
Cdd:COG5434   250 GHGGIVIGSETSGGVRNVTVENCTFDGTDRGLRIKSRRGRGGVVENITIRNITMRNVkGTPIFINLFYEGDRGG------ 323

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1359097711 311 ekkaypideRTPAFRRIHFSNITARNVHaSAGFIYGLAEQFIQEITFDNIDV 362
Cdd:COG5434   324 ---------PTPTFRNITISNVTATGAK-SAILIAGLPEAPIENITLENVTI 365
Glyco_hydro_28 pfam00295
Glycosyl hydrolases family 28; Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2. ...
 33-288 1.14e-41

Glycosyl hydrolases family 28; Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism.


Pssm-ID: 425588 [Multi-domain]  Cd Length: 319  Bit Score: 150.23  E-value: 1.14e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359097711  33 TVVVPAGeFLTGALFLKSNVELHLSAgaVLKFSDDPKDYPVvhsRWegvhrkvyascIYAQNVENISVTGfGTLDGNGKK 112
Cdd:pfam00295   6 QILVPAG-FTLDLTGLTSGTTVTFEG--TTTFGYKEWNGKL---IW-----------ISGSSITVTGASG-GTIDGQGQR 67

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359097711 113 WWH---TFRNEPDNLayprPKLMSFHNCHRITVKDIKLIQSPSWTINPILCSNATFDNLTILNPADS---PNTDGIDPES 186
Cdd:pfam00295  68 WWDgkgTKKNGGKKK----PKFIYIHKVKNSKITGLNIKNSPVFHFSVQSGTDLTISDITIDNSAGDsngHNTDGFDVGS 143

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359097711 187 CKNVRISNCHIDVGDDCIAIKAGTedtyeriaceNITITNCTMVHGHgGVVLGSEMSGS---IRNITISNCIFQETDRGI 263
Cdd:pfam00295 144 SSGVTISNTNIYNQDDCIAINSGS----------NISITNVTCGGGH-GISIGSVGGRSdntVKNVTVKDSTVVNSDNGV 212

                         250       260
                  ....*....|....*....|....*
gi 1359097711 264 RLKSRRGRGGIVEDIRVSNIVMDNV 288
Cdd:pfam00295 213 RIKTISGATGTVSNITYENIVLSNI 237
PLN02793 PLN02793
Probable polygalacturonase
 34-298 1.16e-34

Probable polygalacturonase


Pssm-ID: 215426 [Multi-domain]  Cd Length: 443  Bit Score: 134.24  E-value: 1.16e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359097711  34 VVVPAG-EFLTGALFL----KSNVELHLSAGAVLkfsddPKDyPVVhsrWEGVHRKVYascIYAQNVENISVTGFGTLDG 108
Cdd:PLN02793   88 IVIPAGyTFLVRPIDLggpcKAKLTLQISGTIIA-----PKD-PDV---WKGLNPRKW---LYFHGVNHLTVEGGGTVNG 155

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359097711 109 NGKKWW-HTFRNEPDNLAYPRPKLMSFHNCHRITVKDIKLIQSPSWTINPILCSNATFDNLTILNPADSPNTDGIDPESC 187
Cdd:PLN02793  156 MGHEWWaQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQQMHIAFTNCRRVTISGLKVIAPATSPNTDGIHISAS 235

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359097711 188 KNVRISNCHIDVGDDCIAIKAGTedtyERIACENITitnCTMVHGHGGVVLG-SEMSGSIRNITISNCIFQETDRGIRLK 266
Cdd:PLN02793  236 RGVVIKDSIVRTGDDCISIVGNS----SRIKIRNIA---CGPGHGISIGSLGkSNSWSEVRDITVDGAFLSNTDNGVRIK 308

                         250       260       270
                  ....*....|....*....|....*....|..
gi 1359097711 267 SRRGRGGIVEDIRVSNIVMDNVMCPFILNLYY 298
Cdd:PLN02793  309 TWQGGSGNASKITFQNIFMENVSNPIIIDQYY 340
PLN02218 PLN02218
polygalacturonase ADPG
 28-298 2.29e-33

polygalacturonase ADPG


Pssm-ID: 177865 [Multi-domain]  Cd Length: 431  Bit Score: 130.15  E-value: 2.29e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359097711  28 SDGGGTVVVPAGEfltgALFLKS-------NVELHLSAGAVLKFSDDPKDYPVVhSRWegvhrkvyascIYAQNVENISV 100
Cdd:PLN02218   97 SNGAVNLLVPKGN----TYLLKSiqltgpcKSIRTVQIFGTLSASQKRSDYKDI-SKW-----------IMFDGVNNLSV 160

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359097711 101 TGFGT--LDGNGKKWWHTfrNEPDNLAYP---RPKLMSFHNCHRITVKDIKLIQSPSWTINPILCSNATFDNLTILNPAD 175
Cdd:PLN02218  161 DGGSTgvVDGNGETWWQN--SCKRNKAKPctkAPTALTFYNSKSLIVKNLRVRNAQQIQISIEKCSNVQVSNVVVTAPAD 238

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359097711 176 SPNTDGIDPESCKNVRISNCHIDVGDDCIAIKAGTedtyeriacENITITNCTMVHGHGGVV--LGSEMSGS-IRNITIS 252
Cdd:PLN02218  239 SPNTDGIHITNTQNIRVSNSIIGTGDDCISIESGS---------QNVQINDITCGPGHGISIgsLGDDNSKAfVSGVTVD 309

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 1359097711 253 NCIFQETDRGIRLKSRRGRGGIVEDIRVSNIVMDNVMCPFILNLYY 298
Cdd:PLN02218  310 GAKLSGTDNGVRIKTYQGGSGTASNIIFQNIQMENVKNPIIIDQDY 355
PLN03010 PLN03010
polygalacturonase
 2-372 8.44e-28

polygalacturonase


Pssm-ID: 215540 [Multi-domain]  Cd Length: 409  Bit Score: 114.32  E-value: 8.44e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359097711   2 YDILTFGASIDELNTEAIQQAIDAAASDGG----GTVVVPAGE-FLTGALFLK-----SNVELHLSaGAVLKFSDDpkdy 71
Cdd:PLN03010   47 YNVLKFGAKGDGQTDDSNAFLQAWNATCGGegniNTLLIPSGKtYLLQPIEFKgpcksTSIKVQLD-GIIVAPSNI---- 121

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359097711  72 pvvhSRWEGVHRKVYascIYAQNVENISVTGFGTLDGNGKKWWHTfrnepdnlayprpklMSFHNCHRITVKDIKLIQSP 151
Cdd:PLN03010  122 ----VAWSNPKSQMW---ISFSTVSGLMIDGSGTIDGRGSSFWEA---------------LHISKCDNLTINGITSIDSP 179

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359097711 152 SWTINPILCSNATFDNLTILNPADSPNTDGIDPESCKNVRISNCHIDVGDDCIAIKAGTEDTyeriaceNITITNCTMVH 231
Cdd:PLN03010  180 KNHISIKTCNYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINSGSSNI-------NITQINCGPGH 252

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359097711 232 GHGGVVLGSE-MSGSIRNITISNCIFQETDRGIRLKSRRGRGGIVEDIRVSNIVMDNVMCPFILNlyyfcgprgkEPYVW 310
Cdd:PLN03010  253 GISVGSLGADgANAKVSDVHVTHCTFNQTTNGARIKTWQGGQGYARNISFENITLINTKNPIIID----------QQYID 322

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1359097711 311 EKKAYPIDERTPAFRRIHFSNITARNVHASAGFIYGLAEQFIQEITFDNIDVSMAQDAVPGV 372
Cdd:PLN03010  323 KGKLDATKDSAVAISNVKYVGFRGTTSNENAITLKCSAITHCKDVVMDDIDVTMENGEKPKV 384
PLN03003 PLN03003
Probable polygalacturonase At3g15720
 90-301 2.67e-26

Probable polygalacturonase At3g15720


Pssm-ID: 178580 [Multi-domain]  Cd Length: 456  Bit Score: 110.54  E-value: 2.67e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359097711  90 IYAQNVENISVTGFGTLDGNGKKWWHTfrnepdnlAYPRPKLMSFHNCHRITVKDIKLIQSPSWTINPILCSNATFDNLT 169
Cdd:PLN03003  107 ILFTDIEGLVIEGDGEINGQGSSWWEH--------KGSRPTALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISSLR 178

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359097711 170 ILNPADSPNTDGIDPESCKNVRISNCHIDVGDDCIAIKAGTedtyeriacENITITNCTMVHGHgGVVLGS----EMSGS 245
Cdd:PLN03003  179 INAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGT---------SNIHISGIDCGPGH-GISIGSlgkdGETAT 248

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1359097711 246 IRNITISNCIFQETDRGIRLKSRRGRGGIVEDIRVSNIVMDNVMCPFILNLYYFCG 301
Cdd:PLN03003  249 VENVCVQNCNFRGTMNGARIKTWQGGSGYARMITFNGITLDNVENPIIIDQFYNGG 304
PLN02188 PLN02188
polygalacturonase/glycoside hydrolase family protein
 28-298 8.59e-24

polygalacturonase/glycoside hydrolase family protein


Pssm-ID: 215120 [Multi-domain]  Cd Length: 404  Bit Score: 102.62  E-value: 8.59e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359097711  28 SDGGGTVVVPAGEFLTGALFLKSNVELHLSAGAVLKFSDDPKDYPV----VHSRWegvhrkvyasciyaqnVENISVTGF 103
Cdd:PLN02188   66 STGAVTLLIPPGTYYIGPVQFHGPCTNVSSLTFTLKAATDLSRYGSgndwIEFGW----------------VNGLTLTGG 129

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359097711 104 GTLDGNGKKWWhTFRNEP-DNLAYPRPKLMSFHNCHRITVKDIKLIQSPSWTINPILCSNATFDNLTILNPADSPNTDGI 182
Cdd:PLN02188  130 GTFDGQGAAAW-PFNKCPiRKDCKLLPTSVKFVNMNNTVVRGITSVNSKFFHIALVECRNFKGSGLKISAPSDSPNTDGI 208

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359097711 183 DPESCKNVRISNCHIDVGDDCIAIKAGTedtyeriacENITITNCTMVHGHGGVV--LGS-EMSGSIRNITISNCIFQET 259
Cdd:PLN02188  209 HIERSSGVYISDSRIGTGDDCISIGQGN---------SQVTITRIRCGPGHGISVgsLGRyPNEGDVTGLVVRDCTFTGT 279

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 1359097711 260 DRGIRLKSRRGRGGIVE--DIRVSNIVMDNVMCPFILNLYY 298
Cdd:PLN02188  280 TNGIRIKTWANSPGKSAatNMTFENIVMNNVTNPIIIDQKY 320
PLN02155 PLN02155
polygalacturonase
 1-298 7.46e-20

polygalacturonase


Pssm-ID: 165802 [Multi-domain]  Cd Length: 394  Bit Score: 90.90  E-value: 7.46e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359097711   1 MYDILTFGASIDELNTEAIQQAID---AAASDGGGTVVVPAGEFLTGALFL----KSNVELHLsAGAVLKfsddPKDYPV 73
Cdd:PLN02155   27 VFNVVSFGAKPDGVTDSTAAFLKAwqgACGSASSATVVVPTGTFLLKVITFggpcKSKITFQV-AGTVVA----PEDYRT 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359097711  74 VHSRwegvhrkvyASCIYAQNVENISVTGfGTLDGNGKKWWhTFRNEPDNLAyPRPKLMSFHNCHRITVKDIKLIQSPSW 153
Cdd:PLN02155  102 FGNS---------GYWILFNKVNRFSLVG-GTFDARANGFW-SCRKSGQNCP-PGVRSISFNSAKDVIISGVKSMNSQVS 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359097711 154 TINPILCSNATFDNLTILNPADSPNTDGIDPESCKNVRISNCHIDVGDDCIAIKAGTedtyeriacENITITNCTMVHGH 233
Cdd:PLN02155  170 HMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGT---------RNFLITKLACGPGH 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359097711 234 gGVVLGSEM----SGSIRNITISNCIFQETDRGIRLKS-RRGRGGIVEDIRVSNIVMDNVMCPFILNLYY 298
Cdd:PLN02155  241 -GVSIGSLAkelnEDGVENVTVSSSVFTGSQNGVRIKSwARPSTGFVRNVFFQDLVMKNVENPIIIDQNY 309
NosD pfam05048
Periplasmic copper-binding protein (NosD); NosD is a periplasmic protein which is thought to ...
 161-287 5.51e-04

Periplasmic copper-binding protein (NosD); NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme (NosZ). This region forms a parallel beta helix domain.


Pssm-ID: 428281 [Multi-domain]  Cd Length: 215  Bit Score: 41.25  E-value: 5.51e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359097711 161 SNATFDNLTILNPADSPNTDGIDPESCKNVRISNCHIDVGDDCIAIkagtedtyerIACENITITNCTMVHGHGGVVLGS 240
Cdd:pfam05048   1 VNNAISGDTIGIYNGLSRGNGIQLWNTEGNVISNNDIINSRDGIYL----------DASNNNTITGNRISNLRYGIHLMN 70

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1359097711 241 EmsgsiRNITISNCIFQETDRGIRLKSRRGRggIVEDirvsNIVMDN 287
Cdd:pfam05048  71 S-----NDNTISDNVFSGNTAGIALMSSSNN--TLEN----NTISGN 106
PelB COG3866
Pectate lyase [Carbohydrate transport and metabolism];
181-349 2.37e-03

Pectate lyase [Carbohydrate transport and metabolism];


Pssm-ID: 443075 [Multi-domain]  Cd Length: 326  Bit Score: 39.97  E-value: 2.37e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359097711 181 GIDPESCKNVRISNCHIDVGDDCiaikAGTEDTYERIA-CENITITNCTMVHGHGGVVlgsEMSGSIRNITISNCIFQET 259
Cdd:COG3866   108 GLNIKGASNVIIRNLRFRNGDDG----GGSGGDAIGIEgAHNVWIDHCTFSWGYDGLL---DIKRGSDNVTVSWNIFAEG 180

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359097711 260 drgirlKSRRGRGGIVEDIRVSNIVMDNVMcpFILNLYyfcgprgkepyvwekkaYPIDERTPAFR--RIHFSNitarNV 337
Cdd:COG3866   181 ------KGDHGKGMLIGSSDSDTTGKLRVT--FHHNLF-----------------ANNDSRNPRVRfgQVHVYN----NY 231

                         170
                  ....*....|..
gi 1359097711 338 HASAGFIYGLAE 349
Cdd:COG3866   232 FYNWGNNYGIGS 243
Pectate_lyase_3 pfam12708
Pectate lyase superfamily protein; This family of proteins possesses a beta helical structure ...
 30-254 4.52e-03

Pectate lyase superfamily protein; This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28.


Pssm-ID: 403800 [Multi-domain]  Cd Length: 213  Bit Score: 38.45  E-value: 4.52e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359097711  30 GGGTVVVPAGEFL-TGALFLKSNVELhlsagavlkfSDDPKDYPVvhsrwegvhrkvyasCIYAQNVENISVTgFGTLDG 108
Cdd:pfam12708  33 TPAVVYFPPGTYLvSSPIILYSGTVL----------VGDGNNPPV---------------LKAAPNFVGAGLI-DGDPYT 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359097711 109 NGKKWWHTFRNepdnlayprpklmsFHNCHRITVKDIKLIQSPSWTINPILCSNATFDNLTILNPADSPNT-DGIDPESC 187
Cdd:pfam12708  87 GGGPGIINTNN--------------FYRQIRNLVIDITGVAPGATGIHWQVAQATSLQNVVFEMSFGSGNKhQGIFMENG 152

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1359097711 188 KNVRISNCHIDVGDdcIAIKAGTEDTYERiaceNITITNCTmvhghGGVVLGSEMSGSIRNITISNC 254
Cdd:pfam12708 153 SGGFLNDLVFNGGD--IGIAVGNQQFTTR----NITFHNCG-----TGIDVLWGWGWTYSNNNINNC 208
NosD COG3420
Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion ...
 158-263 5.37e-03

Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion transport and metabolism];


Pssm-ID: 442646 [Multi-domain]  Cd Length: 343  Bit Score: 38.74  E-value: 5.37e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359097711 158 ILCSNATFDNLTILNPADSPNTD--GIDPESCKNVRISNCHI---------DVGDDCIA----IKAGTEDTYER------ 216
Cdd:COG3420    75 ITADNVTVRGLTITGSGDSLTDDdaGIYVRGADNAVIENNRIennlfgiylEGSDNNVIrnntISGNRDLRADRgngihl 154

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1359097711 217 IACENITITNCTMVHGHGGVVLgsemSGSiRNITISNCIFQETDRGI 263
Cdd:COG3420   155 WNSPGNVIEGNTISGGRDGIYL----EFS-DNNVIRNNTIRNLRYGI 196
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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