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Conserved domains on  [gi|1358828059|ref|WP_105628879|]
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single-stranded DNA-binding protein [Spiroplasma poulsonii]

Protein Classification

single-stranded DNA-binding protein( domain architecture ID 11427956)

single-stranded DNA (ssDNA)-binding protein plays a key role in DNA replication, recombination, and repair

CATH:  2.40.50.140
Gene Ontology:  GO:0003697|GO:0006260
PubMed:  12598368|8458342|27838363
SCOP:  4000346

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ssb COG0629
Single-stranded DNA-binding protein [Replication, recombination and repair];
1-89 2.49e-26

Single-stranded DNA-binding protein [Replication, recombination and repair];


:

Pssm-ID: 440394  Cd Length: 116  Bit Score: 95.29  E-value: 2.49e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1358828059   1 MNKFIGIGRTTKDIEIKKTQNGKEYTIFQLAVIRPYSTQ-----KETDFISCQVWNKQATVLQKYCQKGSQIAVTGVLQ- 74
Cdd:COG0629     1 MNKVTLVGRLGKDPELRYTPSGTAVANFRLAVNRRYKDQdgewkDETDWHRVVAWGKLAENAAEYLKKGDKVYVEGRLRt 80

                          90
                  ....*....|....*.
gi 1358828059  75 -SFKNKDNKTEWIVQV 89
Cdd:COG0629    81 rSWEDKDGQKRYTTEV 96
 
Name Accession Description Interval E-value
Ssb COG0629
Single-stranded DNA-binding protein [Replication, recombination and repair];
1-89 2.49e-26

Single-stranded DNA-binding protein [Replication, recombination and repair];


Pssm-ID: 440394  Cd Length: 116  Bit Score: 95.29  E-value: 2.49e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1358828059   1 MNKFIGIGRTTKDIEIKKTQNGKEYTIFQLAVIRPYSTQ-----KETDFISCQVWNKQATVLQKYCQKGSQIAVTGVLQ- 74
Cdd:COG0629     1 MNKVTLVGRLGKDPELRYTPSGTAVANFRLAVNRRYKDQdgewkDETDWHRVVAWGKLAENAAEYLKKGDKVYVEGRLRt 80

                          90
                  ....*....|....*.
gi 1358828059  75 -SFKNKDNKTEWIVQV 89
Cdd:COG0629    81 rSWEDKDGQKRYTTEV 96
SSB_OBF cd04496
SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs ...
 4-89 2.35e-23

SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.


Pssm-ID: 239942  Cd Length: 100  Bit Score: 87.28  E-value: 2.35e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1358828059   4 FIGIGRTTKDIEIKKTQNGKEYTIFQLAVIRPYS----TQKETDFISCQVWNKQATVLQKYCQKGSQIAVTGVLQ--SFK 77
Cdd:cd04496     1 VILIGRLGKDPELRYTPSGTPVARFSLAVNRRRKdrdeEEEETDWIRVVAFGKLAENAAKYLKKGDLVYVEGRLRtrSWE 80

                          90
                  ....*....|..
gi 1358828059  78 NKDNKTEWIVQV 89
Cdd:cd04496    81 DKDGQKRYGTEV 92
SSB pfam00436
Single-strand binding protein family; This family includes single stranded binding proteins ...
 1-95 2.62e-23

Single-strand binding protein family; This family includes single stranded binding proteins and also the primosomal replication protein N (PriB). PriB forms a complex with PriA, PriC and ssDNA.


Pssm-ID: 425680  Cd Length: 103  Bit Score: 87.29  E-value: 2.62e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1358828059   1 MNKFIGIGRTTKDIEIKKTQNGKEYTIFQLAVIRPYS----TQKETDFISCQVWNKQATVLQKYCQKGSQIAVTGVLQS- 75
Cdd:pfam00436   1 MNKVILVGRLTRDPELRYTPNGNAVANFTLATNRRFKdrgeGDEETDFHRVVVFGKLAEVAAQYLKKGSLVYVEGRLQTr 80

                          90       100
                  ....*....|....*....|...
gi 1358828059  76 -FKNKDNKTEWIVQV--SNYEFL 95
Cdd:pfam00436  81 kYEDQEGQKRYVTEIvaDEVQFL 103
PRK07274 PRK07274
single-stranded DNA-binding protein; Provisional
 1-89 2.76e-17

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180914  Cd Length: 131  Bit Score: 72.48  E-value: 2.76e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1358828059   1 MNKFIGIGRTTKDIEIKKTQNGKEYTIFQLAVIRPYSTQK---ETDFISCQVWNKQATVLQKYCQKGSQIAVTGVLQSFK 77
Cdd:PRK07274    2 YNKVILIGRLTATPELVKTANDKSVARVTLAVNRRFKNQNgerEADFINVVLWGKLAETLASYASKGSLISIDGELRTRK 81

                          90
                  ....*....|...
gi 1358828059  78 -NKDNKTEWIVQV 89
Cdd:PRK07274   82 yEKDGQTHYVTEV 94
ssb TIGR00621
single stranded DNA-binding protein (ssb); All proteins in this family for which functions are ...
 2-95 4.43e-16

single stranded DNA-binding protein (ssb); All proteins in this family for which functions are known are single-stranded DNA binding proteins that function in many processes including transcription, repair, replication and recombination. Members encoded between genes for ribosomal proteins S6 and S18 should be annotated as primosomal protein N (PriB). Forms in gamma-protoeobacteria are much shorter and poorly recognized by this model. Additional members of this family include phage proteins. Eukaryotic members are organellar proteins. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273179 [Multi-domain]  Cd Length: 164  Bit Score: 70.14  E-value: 4.43e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1358828059   2 NKFIGIGRTTKDIEIKKTQNGKEYTIFQLAVIRPYSTQ-----KETDFISCQVWNKQATVLQKYCQKGSQIAVTGVLQ-- 74
Cdd:TIGR00621   5 NKVILVGRLTRDPELRYTPSGNAVANFTLATNRRWKDQdgewkEETEWHDIVIFGRLAEVAAQYLKKGSLVYVEGRLRtr 84

                          90       100
                  ....*....|....*....|....*
gi 1358828059  75 SFKNKDN----KTEwiVQVSNYEFL 95
Cdd:TIGR00621  85 KWEDQNGqkrsKTE--IIADNVQLL 107
 
Name Accession Description Interval E-value
Ssb COG0629
Single-stranded DNA-binding protein [Replication, recombination and repair];
1-89 2.49e-26

Single-stranded DNA-binding protein [Replication, recombination and repair];


Pssm-ID: 440394  Cd Length: 116  Bit Score: 95.29  E-value: 2.49e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1358828059   1 MNKFIGIGRTTKDIEIKKTQNGKEYTIFQLAVIRPYSTQ-----KETDFISCQVWNKQATVLQKYCQKGSQIAVTGVLQ- 74
Cdd:COG0629     1 MNKVTLVGRLGKDPELRYTPSGTAVANFRLAVNRRYKDQdgewkDETDWHRVVAWGKLAENAAEYLKKGDKVYVEGRLRt 80

                          90
                  ....*....|....*.
gi 1358828059  75 -SFKNKDNKTEWIVQV 89
Cdd:COG0629    81 rSWEDKDGQKRYTTEV 96
SSB_OBF cd04496
SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs ...
 4-89 2.35e-23

SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.


Pssm-ID: 239942  Cd Length: 100  Bit Score: 87.28  E-value: 2.35e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1358828059   4 FIGIGRTTKDIEIKKTQNGKEYTIFQLAVIRPYS----TQKETDFISCQVWNKQATVLQKYCQKGSQIAVTGVLQ--SFK 77
Cdd:cd04496     1 VILIGRLGKDPELRYTPSGTPVARFSLAVNRRRKdrdeEEEETDWIRVVAFGKLAENAAKYLKKGDLVYVEGRLRtrSWE 80

                          90
                  ....*....|..
gi 1358828059  78 NKDNKTEWIVQV 89
Cdd:cd04496    81 DKDGQKRYGTEV 92
SSB pfam00436
Single-strand binding protein family; This family includes single stranded binding proteins ...
 1-95 2.62e-23

Single-strand binding protein family; This family includes single stranded binding proteins and also the primosomal replication protein N (PriB). PriB forms a complex with PriA, PriC and ssDNA.


Pssm-ID: 425680  Cd Length: 103  Bit Score: 87.29  E-value: 2.62e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1358828059   1 MNKFIGIGRTTKDIEIKKTQNGKEYTIFQLAVIRPYS----TQKETDFISCQVWNKQATVLQKYCQKGSQIAVTGVLQS- 75
Cdd:pfam00436   1 MNKVILVGRLTRDPELRYTPNGNAVANFTLATNRRFKdrgeGDEETDFHRVVVFGKLAEVAAQYLKKGSLVYVEGRLQTr 80

                          90       100
                  ....*....|....*....|...
gi 1358828059  76 -FKNKDNKTEWIVQV--SNYEFL 95
Cdd:pfam00436  81 kYEDQEGQKRYVTEIvaDEVQFL 103
PRK07274 PRK07274
single-stranded DNA-binding protein; Provisional
 1-89 2.76e-17

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180914  Cd Length: 131  Bit Score: 72.48  E-value: 2.76e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1358828059   1 MNKFIGIGRTTKDIEIKKTQNGKEYTIFQLAVIRPYSTQK---ETDFISCQVWNKQATVLQKYCQKGSQIAVTGVLQSFK 77
Cdd:PRK07274    2 YNKVILIGRLTATPELVKTANDKSVARVTLAVNRRFKNQNgerEADFINVVLWGKLAETLASYASKGSLISIDGELRTRK 81

                          90
                  ....*....|...
gi 1358828059  78 -NKDNKTEWIVQV 89
Cdd:PRK07274   82 yEKDGQTHYVTEV 94
PRK06751 PRK06751
single-stranded DNA-binding protein; Provisional
 1-99 7.31e-17

single-stranded DNA-binding protein; Provisional


Pssm-ID: 168659 [Multi-domain]  Cd Length: 173  Bit Score: 72.52  E-value: 7.31e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1358828059   1 MNKFIGIGRTTKDIEIKKTQNGKEYTIFQLAVIRPYSTQ---KETDFISCQVWNKQATVLQKYCQKGSQIAVTGVLQS-- 75
Cdd:PRK06751    2 MNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQqgeREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTrn 81

                          90       100
                  ....*....|....*....|....*.
gi 1358828059  76 FKNKDNKTEWIVQV--SNYEFLHTNN 99
Cdd:PRK06751   82 YEGQDGKRVYVTEVlaESVQFLEPRN 107
ssb TIGR00621
single stranded DNA-binding protein (ssb); All proteins in this family for which functions are ...
 2-95 4.43e-16

single stranded DNA-binding protein (ssb); All proteins in this family for which functions are known are single-stranded DNA binding proteins that function in many processes including transcription, repair, replication and recombination. Members encoded between genes for ribosomal proteins S6 and S18 should be annotated as primosomal protein N (PriB). Forms in gamma-protoeobacteria are much shorter and poorly recognized by this model. Additional members of this family include phage proteins. Eukaryotic members are organellar proteins. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273179 [Multi-domain]  Cd Length: 164  Bit Score: 70.14  E-value: 4.43e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1358828059   2 NKFIGIGRTTKDIEIKKTQNGKEYTIFQLAVIRPYSTQ-----KETDFISCQVWNKQATVLQKYCQKGSQIAVTGVLQ-- 74
Cdd:TIGR00621   5 NKVILVGRLTRDPELRYTPSGNAVANFTLATNRRWKDQdgewkEETEWHDIVIFGRLAEVAAQYLKKGSLVYVEGRLRtr 84

                          90       100
                  ....*....|....*....|....*
gi 1358828059  75 SFKNKDN----KTEwiVQVSNYEFL 95
Cdd:TIGR00621  85 KWEDQNGqkrsKTE--IIADNVQLL 107
PRK06752 PRK06752
single-stranded DNA-binding protein; Validated
 1-86 2.07e-14

single-stranded DNA-binding protein; Validated


Pssm-ID: 168660  Cd Length: 112  Bit Score: 64.67  E-value: 2.07e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1358828059   1 MNKFIGIGRTTKDIEIKKTQNGKEYTIFQLAVIRPYST---QKETDFISCQVWNKQATVLQKYCQKGSQIAVTGVLQSFK 77
Cdd:PRK06752    2 MNRVVLIGRLTKEPELYYTKQGVAYARVCVAVNRGFRNslgEQQVDFINCVVWRKSAENVTEYCTKGSLVGITGRIHTRN 81


                  ....*....
gi 1358828059  78 NKDNKTEWI 86
Cdd:PRK06752   82 YEDDQGKRI 90
PRK07275 PRK07275
single-stranded DNA-binding protein; Provisional
 1-82 1.10e-13

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180915 [Multi-domain]  Cd Length: 162  Bit Score: 64.14  E-value: 1.10e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1358828059   1 MNKFIGIGRTTKDIEIKKTQNGKEYTIFQLAVIRPYSTQ---KETDFISCQVWNKQATVLQKYCQKGSQIAVTGVLQSfK 77
Cdd:PRK07275    2 INNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQngeREADFINCVIWRQQAENLANWAKKGALIGVTGRIQT-R 80


                  ....*
gi 1358828059  78 NKDNK 82
Cdd:PRK07275   81 NYENQ 85
PRK07459 PRK07459
single-stranded DNA-binding protein; Provisional
 7-104 2.40e-08

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180986  Cd Length: 121  Bit Score: 48.91  E-value: 2.40e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1358828059   7 IGRTTKDIEIKKTQNGKEYTIFQLAVIRPySTQKETDFISCQVWNKQATVLQKYCQKGSQIAVTGVLQ--SFKNKD---N 81
Cdd:PRK07459    9 VGRAGRDPEVRYFESGSVVCNLTLAVNRR-SRDDEPDWFNLEIWGKTAQVAADYVKKGSLIGITGSLKfdRWTDRNtgeD 87

                          90       100
                  ....*....|....*....|...
gi 1358828059  82 KTEWIVQVSNYEFLHTnndlKRD 104
Cdd:PRK07459   88 RSKPVIRVDRLELLGS----KRD 106
PRK06293 PRK06293
single-stranded DNA-binding protein; Provisional
 7-90 4.12e-08

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180517 [Multi-domain]  Cd Length: 161  Bit Score: 49.13  E-value: 4.12e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1358828059   7 IGRTTKDIEIKKTQNGKEYTIFQLAVIRPYSTQKETDFISCQVWNKQATVLQKYCQKGSQIAVTGVL--QSFKNKDNKTE 84
Cdd:PRK06293    7 VGRLGADPEERMTSKGKRVVVLRLGVKSRVGSKDETVWCRCNIWGNRYDKMLPYLKKGSGVIVAGEMspESYVDKDGSPQ 86


                  ....*.
gi 1358828059  85 WIVQVS 90
Cdd:PRK06293   87 SSLVVS 92
PRK13732 PRK13732
single-stranded DNA-binding protein; Provisional
 1-89 2.44e-05

single-stranded DNA-binding protein; Provisional


Pssm-ID: 184284 [Multi-domain]  Cd Length: 175  Bit Score: 42.03  E-value: 2.44e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1358828059   1 MNKFIGIGRTTKDIEIKKTQNGKEYTIFQLAVIRPY------STQKETDFISCQVWNKQATVLQKYCQKGSQIAVTGVLQ 74
Cdd:PRK13732    6 INKVILVGRLGKDPEVRYIPNGGAVANLQVATSESWrdkqtgEMREQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQLR 85

                          90
                  ....*....|....*.
gi 1358828059  75 SFKNKDNK-TEWIVQV 89
Cdd:PRK13732   86 TRSWEDNGiTRYVTEI 101
PRK06642 PRK06642
single-stranded DNA-binding protein; Provisional
 1-95 8.90e-05

single-stranded DNA-binding protein; Provisional


Pssm-ID: 135984  Cd Length: 152  Bit Score: 40.09  E-value: 8.90e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1358828059   1 MNKFIGIGRTTKDIEIKKTQNGKEYTIFQLAVI-----RPYSTQKE-TDFISCQVWNKQ-ATVLQKYCQKGSQIAVTGVL 73
Cdd:PRK06642    5 LNKVILIGNVGRDPEIRTTGEGKKIINLSLATTetwkdRITSERKErTEWHRVVIFSEGlVSVVERYVTKGSKLYIEGSL 84

                          90       100
                  ....*....|....*....|....*...
gi 1358828059  74 QSFKNKDNK------TEWIVQVSNYEFL 95
Cdd:PRK06642   85 QTRKWNDNSgqekytTEVVLQNFNSQLI 112
PRK06341 PRK06341
single-stranded DNA-binding protein; Provisional
 1-88 3.13e-04

single-stranded DNA-binding protein; Provisional


Pssm-ID: 235782 [Multi-domain]  Cd Length: 166  Bit Score: 38.63  E-value: 3.13e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1358828059   1 MNKFIGIGRTTKDIEIKKTQNGKEYTIFQLAVI-----RPYSTQKE-TDFISCQVWNKQ-ATVLQKYCQKGSQIAVTGVL 73
Cdd:PRK06341    5 VNKVILIGNLGADPEIRRTQDGRPIANLRIATSetwrdRNSGERKEkTEWHRVVIFNEGlCKVAEQYLKKGAKVYIEGQL 84

                          90       100
                  ....*....|....*....|.
gi 1358828059  74 QSFKNKDNK------TEWIVQ 88
Cdd:PRK06341   85 QTRKWTDQSgverysTEVVLQ 105
PRK08763 PRK08763
single-stranded DNA-binding protein; Provisional
 1-89 5.07e-04

single-stranded DNA-binding protein; Provisional


Pssm-ID: 181549 [Multi-domain]  Cd Length: 164  Bit Score: 38.00  E-value: 5.07e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1358828059   1 MNKFIGIGRTTKDIEIKKTQNGKEYTIFQLAVI-----RPYSTQKETDFISCQVWNKQATVLQKYCQKGSQIAVTGVLQ- 74
Cdd:PRK08763    5 INKVILVGNLGNDPDIKYTQSGMTITRISLATTsvrkdREGNTQERTEWHRVKFFGKLGEIAGEYLRKGSQCYIEGSIRy 84

                          90
                  ....*....|....*.
gi 1358828059  75 -SFKNKDNKTEWIVQV 89
Cdd:PRK08763   85 dKFTGQDGQERYVTEI 100
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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