|
Name |
Accession |
Description |
Interval |
E-value |
| TonB-Xanth-Caul |
TIGR01782 |
TonB-dependent receptor; This model represents a family of TonB-dependent outer-membrane ... |
48-963 |
7.17e-147 |
|
TonB-dependent receptor; This model represents a family of TonB-dependent outer-membrane receptors which are found mainly in Xanthomonas and Caulobacter. These appear to represent the expansion of a paralogous family in that the 22 X. axonopodis (21 in X. campestris) and 18 C. crescentus sequences are more closely related to each other than any of the many TonB-dependent receptors found in other species. In fact, the Crescentus and Xanthomonas sequences are inseparable on a phylogenetic tree using a PAM-weighted neighbor-joining method, indicating that one of the two genuses may have acquired this set of receptors from the other. The mechanism by which this family is shared between Xanthomonas, a gamma proteobacterial plant pathogen and Caulobacter, an alpha proteobacterial aquatic organism is unclear. [Transport and binding proteins, Porins]
Pssm-ID: 273804 [Multi-domain] Cd Length: 845 Bit Score: 457.18 E-value: 7.17e-147
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 48 LDQVQVTGIRESMQSSINKKRDDTVIADVLSADDIGDLPAPSLADAIETLTGAASTRDKTGASEISIRGLGAFLSSTNFN 127
Cdd:TIGR01782 1 LDAVQVTGQRASLEKAIDAKRDADSVVDVISAEDIGKLPDVNVAEALQRVPGVSIERDQGEGRYVSVRGLGPSYNRTTLN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 128 GREI-TNGSGDRSVNFNMFPAELINTVAIYKTQRADIIEGGVAGTIGLETVRPLEYGKRAAQLDLRGSWAEydkkYRDDD 206
Cdd:TIGR01782 81 GRTIaSTDSGGRAFSLDLLPSELVSGVEVYKTPTADMDEGGIGGTVDLRTRSPFDYDGRTLSGSAQGGYND----LAGKD 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 207 GIGYRGTASYIDQFefgNGQKLGISLGF--QRLDGTDPEESITSGSTWYACDGTqnvgnancnevsaqaiangAPYYLVP 284
Cdd:TIGR01782 157 KPGPRGAASYSWTF---GDGQFGVLLSAsyQKRDFAEDNVETENWGTYTSADGG-------------------AQGLYFP 214
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 285 SSRIYRLKQERNDRQSEFAALQWRPNDLVEVNLDFEHTERNWYENRSDLSLSNARRG---ITRREVDEDG-IVRHLHGST 360
Cdd:TIGR01782 215 RGVRYRSYRNDRERKGVNGSLQWRPSDALELYLDTLYSKYDDDETRQQIEFRTLNGGstvITSNQTATSGaLVQGTVANL 294
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 361 SIDSTSNRYWRGEEYTGGGLNLILRPtPAWELSTDLSYSHTNRLDSERMTRLRANqrnvsnaivpgissgATGYVDYDWD 440
Cdd:TIGR01782 295 QILVEARYNEEKETTTSLTLGGEWTG-DRWTLDGDLGYSKATRDRPDRVTRFFTA---------------PTPGYDFDYR 358
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 441 WHGEVPSVALAPNFDPNNWD--AYTGAARVTSSATENDHRIKAGRFDASFMpesGFLTRIKGGVRASQADYRLRDntlvS 518
Cdd:TIGR01782 359 GGPTLTLGTPADGDDASNYTnpANGELRRTQISYQKAEDSEDAAQLDATFD---GPFTSLKFGVRYRRRDKTNRG----S 431
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 519 DYDQRVAADKAKIIAANQACRAPFPQDDFMDAASGNTISSWAYFDPNCLYQSFRGSlDSGLDPGFQDPNNVDITEKTRAL 598
Cdd:TIGR01782 432 RYRRSIIGATGASGLAGVPSDLAGAGLDGGLGGPLTGWDPADLDAFLNAARGDAAG-GGTYTYASTAPNTYTVTEDTTAA 510
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 599 YLMGEFSsslFGLPVTGNLGLRWVKTDVRSEGVRTglriedngdGTIRLQPTGAYSTQVFRAGNDKLLPSLNAAFELRPD 678
Cdd:TIGR01782 511 YAMANFD---TGLRLRGNVGVRYERTDQTSDGWQS---------QPAANGTGSVLVPVSADRDYTDVLPSLNLAYDLTDD 578
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 679 VLLRVGAYRAMSRPDIAALGAGRTINVSSDATYGNLadalddisASGNPAAQPLMSWNGDLSLEWYPNPDTMLAGAVYWK 758
Cdd:TIGR01782 579 LVLRFAASKTITRPDFGDLAANTSLSDDGTGGTVTV--------SGGNPDLKPYESDNLDLSLEWYFGPGGLLSAAVFYK 650
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 759 QFNGGTATALVPETYTIDGQSV--TVPVRQQVTTDEDSTLTGFELTATHRLSYLPKPFDGLGFKVSYNYADAD-YRTQDS 835
Cdd:TIGR01782 651 DIKNFIVTTTSTETNDGGGGLVvaGVLVSRPVNGGKAGKIRGVELGYQQTFDFLPGPLSGFGVQANYTYVDSEaDPSVDG 730
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 836 RLGEQLasdgtiipaivppaGLSGFSRHVLSGSIYWDVGRFNIQAIGKFRSHYYQDFTG-NTAQQNRYYDDNTSVDLRLR 914
Cdd:TIGR01782 731 VQRRKL--------------PLPGLSKNTANATLYYEKGGFSARLSYNYRSDYLLDVGGsNINRLDRYVDPRGQLDLSAS 796
|
890 900 910 920
....*....|....*....|....*....|....*....|....*....
gi 1349677838 915 YRVNKQLSLSLELMNLTNEPRVAYQPLYGNFREVVTYGRRAYFGVRYKF 963
Cdd:TIGR01782 797 YQVSDHLSLGLQASNLTNEPSRWYTGGKQRPREYVETGRTYMLGLRYKF 845
|
|
| ligand_gated_channel |
cd01347 |
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) ... |
75-963 |
5.78e-42 |
|
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.
Pssm-ID: 238657 [Multi-domain] Cd Length: 635 Bit Score: 163.78 E-value: 5.78e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 75 DVLSADDIGDLPAPSLADAIETLTG-AASTRDKTGASEISIRGLGAFLSSTNFNGREITNGSGDRSVNFNMFPAELINTV 153
Cdd:cd01347 3 SVITAEDIEKQPATSLADLLRRIPGvSVTRGGGGGGSTISIRGFGPDRTLVLVDGLPLASSNYGRGVDLNTIPPELIERV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 154 AIYKTQRADII-EGGVAGTIGLETVRPleygKRAAQLDLRGSWAEYDKKYRDDDGIGYRGTASYIDQFEFgngqklgisl 232
Cdd:cd01347 83 EVLKGPSSALYgSGAIGGVVNIITKRP----TDEFGGSVTAGYGSDNSGSSGGGGFDVSGALADDGAFGA---------- 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 233 gfqRLDGTdpeesitsgstwyacdgtqnvgnancnevsaqaiANGAPYYLVPSSRIYRLKQERNDRqseFAALQWRPNDL 312
Cdd:cd01347 149 ---RLYGA----------------------------------YRDGDGTIDGDGQADDSDEERYNV---AGKLDWRPDDD 188
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 313 VEVNLDFEHT-ERNWYENRSDLSLSNARRGITRREVDedgivrhlhGSTSIDSTSNRYWRGEEYTGGGLNLILRptpAWE 391
Cdd:cd01347 189 TRLTLDAGYQdQDADGPGGTLPANGTGSSLGGGPSSN---------TNGDRDWDYRDRYRKRASLGLEHDLNDT---GWT 256
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 392 LSTDLSYSHTNrldsermTRLRANQRNVSNaivpgissgatgyvdydwdwhgevpsvalapnfdpNNWDAYTGAARVTSS 471
Cdd:cd01347 257 LRANLSYSYTD-------NDGDPLILNGGN-----------------------------------NAAGGDLGRSGYSSE 294
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 472 ATENDHRIKAgRFDASFMpESGFLTRIKGGVrasqaDYRLRDNTlvsdydqrvaadkakiiaanqacrapfpqddfmdaa 551
Cdd:cd01347 295 RDTTQLGFDA-GLNAPFG-TGPVAHTLTLGV-----EYRREELD------------------------------------ 331
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 552 sgntisswayfdpnclyqsfrgsldsgldpgfqdpnnvditEKTRALYLMGEFSsslFGLPVTGNLGLRWVKTDVRSEGV 631
Cdd:cd01347 332 -----------------------------------------EKQTALYAQDTIE---LTDDLTLTLGLRYDHYDQDSKDT 367
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 632 RTGLRIEDNGDgtirlqptgaystqvfragnDKLLPSLNAAFELRPDVLLRVGAYRAMSRPDIAALGAGRTINVSSdaty 711
Cdd:cd01347 368 IAGGTTAKKSY--------------------SHWSPSLGLVYKLTDGLSLYASYSQGFRAPSLGELYGGGSHGGTA---- 423
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 712 gnladalddisASGNPAAQPLMSWNGDLSLEWYPNPDTMLAGAVYWKQFNGGTATALVPETYTIDGQSVTVPvrqqvttd 791
Cdd:cd01347 424 -----------AVGNPNLKPEKSKQYELGLKYDPGDGLTLSAALFRIDIKNEIVSTPTNTGLGLVTVYVNGG-------- 484
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 792 eDSTLTGFELTATHRLSylpkpfDGLGFKVSYNYADADYRTQDSrlgeqlASDGTIIPAIvppaglsgfSRHVLSGSIYW 871
Cdd:cd01347 485 -KARIRGVELEASYDLT------DGLGLTGSYTYTDTEVKRTDG------ATTGNRLPGI---------PKHTANLGLDY 542
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 872 DVG--RFNIQAIGKFRSHYYQDFTGNTAQQnrYYDDNTSVDLRLRYRVNKQLSLSLELMNLTNEPRVAYQ-PLYGNFREV 948
Cdd:cd01347 543 ELPdeGLTAGGGVRYRGKQYADTANGNNTV--KVPGYTLVDLSASYQFTKNLTLRLGVNNLFDKDYYTSLsVRGSGLYGY 620
|
890
....*....|....*
gi 1349677838 949 VTYGRRAYFGVRYKF 963
Cdd:cd01347 621 YGPGRTYYLSVSYKF 635
|
|
| TonB_dep_Rec |
pfam00593 |
TonB dependent receptor; This model now only covers the conserved part of the barrel structure. |
427-962 |
3.42e-21 |
|
TonB dependent receptor; This model now only covers the conserved part of the barrel structure.
Pssm-ID: 395474 [Multi-domain] Cd Length: 475 Bit Score: 97.92 E-value: 3.42e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 427 ISSGATGYVDYDW-DWHGEVPSVALAPNFDPNNWDAYTGAARVTSSATENDHRIKAGRFDASFMPESGFLTRIKGGVRAS 505
Cdd:pfam00593 9 LGDDTLLTLGYDYsRYTDGLDLGLTLDGYGNDGGYLGDRPLYYGRDYSDTDRKRLSLGYDYDLGDGLSWLSTLRLGLRYS 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 506 QADYRLRDNTLV----SDYDQRVAADKAKIIAANQACRAPFPQDDFMDAASGNTISSWAYFDPNclyqsfrgSLDSGLDP 581
Cdd:pfam00593 89 SLDGDYTSNSSGlsgaGDYLSDDRLYGLYGLDGDLELSLDLSHDLLLGVELRTAGLDYRRLDDD--------AYDPYDPA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 582 GFQDPNNVDITEKTRALYLMGEFSsslFGLPVTGNLGLRWVKTDVRSEGVRTGlriedngdgtirlqptgaysTQVFRAG 661
Cdd:pfam00593 161 NPSSSSYSDTTTDSYGLYLQDNIK---LTDRLTLTLGLRYDHYSTDGDDGNGG--------------------GDNFSRS 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 662 NDKLLPSLNAAFELRPDVLLRVGAYRAMSRPDIAALgagrtinvssdatYGNLADALDDISASGNPAAQPLMSWNGDLSL 741
Cdd:pfam00593 218 YSAFSPRLGLVYKPTDNLSLYASYSRGFRAPSLGEL-------------YGSGSGGGGGAVAGGNPDLKPETSDNYELGL 284
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 742 EWYPNpDTMLAGAVYWKQFNGgtatalvpETYTIDGQSVTVPVRQQVTTDEDSTLTGFELTATHRLsylpkpFDGLGFKV 821
Cdd:pfam00593 285 KYDDG-RLSLSLALFYIDIKN--------LITSDPDGPGLGGTVYTYTNVGKARIRGVELELSGRL------WGLGLSGG 349
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 822 SYNYADADYRTQDSRLGEQLAsdgtiipaivppaglsGFSRHVLSGSIYWDVGRFNIQAIGKFRSHYYQDFTGNTAQQNR 901
Cdd:pfam00593 350 GYTYTDADDDADADDTGNPLP----------------NVPRHTANLGLTYDFPLGGWGARLGARYVGSGERRYGDAANTF 413
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1349677838 902 YYDDNTSVDLRLRYRVNKQLSLSLELMNLTNEPRVAYQPLYGNFREVVT-YGRRAYFGVRYK 962
Cdd:pfam00593 414 KTPGYTLVDLSAGYRLNKNLTLRLGVNNLFDKYYKRYYSSGGGNLGGYPgPGRTFYLGLSYK 475
|
|
| FepA |
COG4771 |
Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and ... |
22-924 |
1.36e-19 |
|
Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and metabolism];
Pssm-ID: 443803 [Multi-domain] Cd Length: 612 Bit Score: 94.15 E-value: 1.36e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 22 LLAVLAGLPTAQAQSGKDAAGQDPTTLDQVQVTGIRESMqssinKKRDDTVIADVLSADDIGDLPAPSLADAIETLTG-- 99
Cdd:COG4771 1 LLLASLLLLLALAAQAADALAEDATELEEVVVTATRTEQ-----SLSDAPASVSVITAEEIEKLGATDLADALRLLPGvs 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 100 AASTRDKTGASEISIRGLGAFLSSTNFNGREITNGSGDRSVNFNMFPAELIntvaiyktQRADIIEGG---------VAG 170
Cdd:COG4771 76 VTRSGGRGGSSGISIRGLGGDRVLVLIDGVPVNNPALGGGGDLSYIPPDDI--------ERIEVIRGPasalygsdaIGG 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 171 TIGLETVRPLEYGKRAAQLDlrgswaeydkkYRDDDGIGYRGTASYidqfeFGNGQKLGISLGFQRLDGTDPEESITSGs 250
Cdd:COG4771 148 VINIITKKPTDELEGSVSLG-----------YGSNGNGTYSGSLSL-----GGPGDKLSFLLSGSYRDRDGYLDYRNGG- 210
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 251 twyacdgtqnvgnancnevsaqaiangapyylvpssriyRLKQERNDRQSEFAALQWRPNDLVEVNLDFEHTernwyenr 330
Cdd:COG4771 211 ---------------------------------------FVGNSGYERYNLNAKLGYRLSDNHRLSLSGGYS-------- 243
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 331 sdlslsnarrgitrrevDEDGIVRHLHGSTSIDSTSNRYWRGEEYTGGGLNLILRPTPAWELSTDLSYSHTNRldsermt 410
Cdd:COG4771 244 -----------------RQDRDGGPPTLGDTEISSDNAGDRDTTTDRGNYSLRYNGDLGDNLDLSLYYSRTDR------- 299
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 411 rlraNQRNVSNAIVPGissgatgyvdydwdwhgevpsvalapNFDPNNWDAYTGAARVTSSATENdHRIKAGrfdasfmp 490
Cdd:COG4771 300 ----DSTNGSLGGSTG--------------------------SFSDSDDTTYGLELDLTYPLGGN-HTLTLG-------- 340
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 491 esgfltrikggvrasqADYRLRDNtlvsdydqrvaadkakiiaanqacrapfpQDDFMDAASGNTISSWAYFdpnclyqs 570
Cdd:COG4771 341 ----------------AEYRYDDL-----------------------------DSSSFLGGADASRDTYGLF-------- 367
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 571 frgsldsgldpgFQDpnNVDITEKTRalylmgefssslfglpvtgnlglrwvktdvrsegVRTGLRIEdngdgtirlqpt 650
Cdd:COG4771 368 ------------AQD--EWKLTDKLT----------------------------------LTAGLRYD------------ 387
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 651 gaYSTQVFRAGNDKLLPSLNAAFELRPDVLLRVGAYRAMSRPDIAALGAGRTINVSSDATygnladalddisasGNPAAQ 730
Cdd:COG4771 388 --YYSTFGASNYTAFSPRLGLRYDLSDNLTLRASYGRGFRAPSLAELYGSGTGTPGRYVL--------------GNPDLK 451
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 731 PLMSWNGDLSLEWYPNPDTMLAGA-VYWKQFNGgtatALVPETYTIDGQSVTVPVRQqvttdEDSTLTGFELTATHRLSy 809
Cdd:COG4771 452 PETSDNYELGLEYRLGNGGLSLSLtGFYTDIKD----LIVLVPVGPGPGDVLQYENV-----GKARTYGLELELKYRLG- 521
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 810 lpkpfDGLGFKVSYNYADADYRTQDSRlgeqlasdgtiipaivppAGLSGFSRHVLSGSIYWDVGRFNiQAIGKFRSHYY 889
Cdd:COG4771 522 -----KGLTLTASYTYLDSKIDDGDTG------------------EPLPNVPPHKANLGLDYRLPKWW-LLLLLTRYYGG 577
|
890 900 910
....*....|....*....|....*....|....*
gi 1349677838 890 QDFTGNTAQQNRYYDDNTSVDLRLRYRVNKQLSLS 924
Cdd:COG4771 578 RYVTPPSGRLEGYTPGYTLLDLRASYKLTKNLTLS 612
|
|
| PRK13484 |
PRK13484 |
IreA family TonB-dependent siderophore receptor; |
822-963 |
6.89e-05 |
|
IreA family TonB-dependent siderophore receptor;
Pssm-ID: 139605 [Multi-domain] Cd Length: 682 Bit Score: 46.92 E-value: 6.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 822 SYNYADADYRTQDSRL-GEQLASDgtiiPAIVPPaglsgfsRHVLSGSIYWDVGrfniQAIGKFRSHYYQDFTGNTAQQN 900
Cdd:PRK13484 552 NYTFTDSRRKSDDESLnGKSLKGE----PLERTP-------RHAANAKLEWDYT----QDITFYSSLNYTGKQIWAAQRN 616
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1349677838 901 -----RYYDDNTSVDLRLRYRVNKQLSLSLELMNLTNEPRVAYQPLYGNFreVVTYGRRAYFGVRYKF 963
Cdd:PRK13484 617 gakvpRVRNGFTSMDIGLNYQILPDTLINFAVLNVTDRKSEDIDTIDGNW--QVDEGRRYWANVRVSF 682
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| TonB-Xanth-Caul |
TIGR01782 |
TonB-dependent receptor; This model represents a family of TonB-dependent outer-membrane ... |
48-963 |
7.17e-147 |
|
TonB-dependent receptor; This model represents a family of TonB-dependent outer-membrane receptors which are found mainly in Xanthomonas and Caulobacter. These appear to represent the expansion of a paralogous family in that the 22 X. axonopodis (21 in X. campestris) and 18 C. crescentus sequences are more closely related to each other than any of the many TonB-dependent receptors found in other species. In fact, the Crescentus and Xanthomonas sequences are inseparable on a phylogenetic tree using a PAM-weighted neighbor-joining method, indicating that one of the two genuses may have acquired this set of receptors from the other. The mechanism by which this family is shared between Xanthomonas, a gamma proteobacterial plant pathogen and Caulobacter, an alpha proteobacterial aquatic organism is unclear. [Transport and binding proteins, Porins]
Pssm-ID: 273804 [Multi-domain] Cd Length: 845 Bit Score: 457.18 E-value: 7.17e-147
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 48 LDQVQVTGIRESMQSSINKKRDDTVIADVLSADDIGDLPAPSLADAIETLTGAASTRDKTGASEISIRGLGAFLSSTNFN 127
Cdd:TIGR01782 1 LDAVQVTGQRASLEKAIDAKRDADSVVDVISAEDIGKLPDVNVAEALQRVPGVSIERDQGEGRYVSVRGLGPSYNRTTLN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 128 GREI-TNGSGDRSVNFNMFPAELINTVAIYKTQRADIIEGGVAGTIGLETVRPLEYGKRAAQLDLRGSWAEydkkYRDDD 206
Cdd:TIGR01782 81 GRTIaSTDSGGRAFSLDLLPSELVSGVEVYKTPTADMDEGGIGGTVDLRTRSPFDYDGRTLSGSAQGGYND----LAGKD 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 207 GIGYRGTASYIDQFefgNGQKLGISLGF--QRLDGTDPEESITSGSTWYACDGTqnvgnancnevsaqaiangAPYYLVP 284
Cdd:TIGR01782 157 KPGPRGAASYSWTF---GDGQFGVLLSAsyQKRDFAEDNVETENWGTYTSADGG-------------------AQGLYFP 214
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 285 SSRIYRLKQERNDRQSEFAALQWRPNDLVEVNLDFEHTERNWYENRSDLSLSNARRG---ITRREVDEDG-IVRHLHGST 360
Cdd:TIGR01782 215 RGVRYRSYRNDRERKGVNGSLQWRPSDALELYLDTLYSKYDDDETRQQIEFRTLNGGstvITSNQTATSGaLVQGTVANL 294
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 361 SIDSTSNRYWRGEEYTGGGLNLILRPtPAWELSTDLSYSHTNRLDSERMTRLRANqrnvsnaivpgissgATGYVDYDWD 440
Cdd:TIGR01782 295 QILVEARYNEEKETTTSLTLGGEWTG-DRWTLDGDLGYSKATRDRPDRVTRFFTA---------------PTPGYDFDYR 358
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 441 WHGEVPSVALAPNFDPNNWD--AYTGAARVTSSATENDHRIKAGRFDASFMpesGFLTRIKGGVRASQADYRLRDntlvS 518
Cdd:TIGR01782 359 GGPTLTLGTPADGDDASNYTnpANGELRRTQISYQKAEDSEDAAQLDATFD---GPFTSLKFGVRYRRRDKTNRG----S 431
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 519 DYDQRVAADKAKIIAANQACRAPFPQDDFMDAASGNTISSWAYFDPNCLYQSFRGSlDSGLDPGFQDPNNVDITEKTRAL 598
Cdd:TIGR01782 432 RYRRSIIGATGASGLAGVPSDLAGAGLDGGLGGPLTGWDPADLDAFLNAARGDAAG-GGTYTYASTAPNTYTVTEDTTAA 510
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 599 YLMGEFSsslFGLPVTGNLGLRWVKTDVRSEGVRTglriedngdGTIRLQPTGAYSTQVFRAGNDKLLPSLNAAFELRPD 678
Cdd:TIGR01782 511 YAMANFD---TGLRLRGNVGVRYERTDQTSDGWQS---------QPAANGTGSVLVPVSADRDYTDVLPSLNLAYDLTDD 578
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 679 VLLRVGAYRAMSRPDIAALGAGRTINVSSDATYGNLadalddisASGNPAAQPLMSWNGDLSLEWYPNPDTMLAGAVYWK 758
Cdd:TIGR01782 579 LVLRFAASKTITRPDFGDLAANTSLSDDGTGGTVTV--------SGGNPDLKPYESDNLDLSLEWYFGPGGLLSAAVFYK 650
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 759 QFNGGTATALVPETYTIDGQSV--TVPVRQQVTTDEDSTLTGFELTATHRLSYLPKPFDGLGFKVSYNYADAD-YRTQDS 835
Cdd:TIGR01782 651 DIKNFIVTTTSTETNDGGGGLVvaGVLVSRPVNGGKAGKIRGVELGYQQTFDFLPGPLSGFGVQANYTYVDSEaDPSVDG 730
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 836 RLGEQLasdgtiipaivppaGLSGFSRHVLSGSIYWDVGRFNIQAIGKFRSHYYQDFTG-NTAQQNRYYDDNTSVDLRLR 914
Cdd:TIGR01782 731 VQRRKL--------------PLPGLSKNTANATLYYEKGGFSARLSYNYRSDYLLDVGGsNINRLDRYVDPRGQLDLSAS 796
|
890 900 910 920
....*....|....*....|....*....|....*....|....*....
gi 1349677838 915 YRVNKQLSLSLELMNLTNEPRVAYQPLYGNFREVVTYGRRAYFGVRYKF 963
Cdd:TIGR01782 797 YQVSDHLSLGLQASNLTNEPSRWYTGGKQRPREYVETGRTYMLGLRYKF 845
|
|
| ligand_gated_channel |
cd01347 |
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) ... |
75-963 |
5.78e-42 |
|
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.
Pssm-ID: 238657 [Multi-domain] Cd Length: 635 Bit Score: 163.78 E-value: 5.78e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 75 DVLSADDIGDLPAPSLADAIETLTG-AASTRDKTGASEISIRGLGAFLSSTNFNGREITNGSGDRSVNFNMFPAELINTV 153
Cdd:cd01347 3 SVITAEDIEKQPATSLADLLRRIPGvSVTRGGGGGGSTISIRGFGPDRTLVLVDGLPLASSNYGRGVDLNTIPPELIERV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 154 AIYKTQRADII-EGGVAGTIGLETVRPleygKRAAQLDLRGSWAEYDKKYRDDDGIGYRGTASYIDQFEFgngqklgisl 232
Cdd:cd01347 83 EVLKGPSSALYgSGAIGGVVNIITKRP----TDEFGGSVTAGYGSDNSGSSGGGGFDVSGALADDGAFGA---------- 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 233 gfqRLDGTdpeesitsgstwyacdgtqnvgnancnevsaqaiANGAPYYLVPSSRIYRLKQERNDRqseFAALQWRPNDL 312
Cdd:cd01347 149 ---RLYGA----------------------------------YRDGDGTIDGDGQADDSDEERYNV---AGKLDWRPDDD 188
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 313 VEVNLDFEHT-ERNWYENRSDLSLSNARRGITRREVDedgivrhlhGSTSIDSTSNRYWRGEEYTGGGLNLILRptpAWE 391
Cdd:cd01347 189 TRLTLDAGYQdQDADGPGGTLPANGTGSSLGGGPSSN---------TNGDRDWDYRDRYRKRASLGLEHDLNDT---GWT 256
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 392 LSTDLSYSHTNrldsermTRLRANQRNVSNaivpgissgatgyvdydwdwhgevpsvalapnfdpNNWDAYTGAARVTSS 471
Cdd:cd01347 257 LRANLSYSYTD-------NDGDPLILNGGN-----------------------------------NAAGGDLGRSGYSSE 294
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 472 ATENDHRIKAgRFDASFMpESGFLTRIKGGVrasqaDYRLRDNTlvsdydqrvaadkakiiaanqacrapfpqddfmdaa 551
Cdd:cd01347 295 RDTTQLGFDA-GLNAPFG-TGPVAHTLTLGV-----EYRREELD------------------------------------ 331
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 552 sgntisswayfdpnclyqsfrgsldsgldpgfqdpnnvditEKTRALYLMGEFSsslFGLPVTGNLGLRWVKTDVRSEGV 631
Cdd:cd01347 332 -----------------------------------------EKQTALYAQDTIE---LTDDLTLTLGLRYDHYDQDSKDT 367
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 632 RTGLRIEDNGDgtirlqptgaystqvfragnDKLLPSLNAAFELRPDVLLRVGAYRAMSRPDIAALGAGRTINVSSdaty 711
Cdd:cd01347 368 IAGGTTAKKSY--------------------SHWSPSLGLVYKLTDGLSLYASYSQGFRAPSLGELYGGGSHGGTA---- 423
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 712 gnladalddisASGNPAAQPLMSWNGDLSLEWYPNPDTMLAGAVYWKQFNGGTATALVPETYTIDGQSVTVPvrqqvttd 791
Cdd:cd01347 424 -----------AVGNPNLKPEKSKQYELGLKYDPGDGLTLSAALFRIDIKNEIVSTPTNTGLGLVTVYVNGG-------- 484
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 792 eDSTLTGFELTATHRLSylpkpfDGLGFKVSYNYADADYRTQDSrlgeqlASDGTIIPAIvppaglsgfSRHVLSGSIYW 871
Cdd:cd01347 485 -KARIRGVELEASYDLT------DGLGLTGSYTYTDTEVKRTDG------ATTGNRLPGI---------PKHTANLGLDY 542
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 872 DVG--RFNIQAIGKFRSHYYQDFTGNTAQQnrYYDDNTSVDLRLRYRVNKQLSLSLELMNLTNEPRVAYQ-PLYGNFREV 948
Cdd:cd01347 543 ELPdeGLTAGGGVRYRGKQYADTANGNNTV--KVPGYTLVDLSASYQFTKNLTLRLGVNNLFDKDYYTSLsVRGSGLYGY 620
|
890
....*....|....*
gi 1349677838 949 VTYGRRAYFGVRYKF 963
Cdd:cd01347 621 YGPGRTYYLSVSYKF 635
|
|
| TonB_dep_Rec |
pfam00593 |
TonB dependent receptor; This model now only covers the conserved part of the barrel structure. |
427-962 |
3.42e-21 |
|
TonB dependent receptor; This model now only covers the conserved part of the barrel structure.
Pssm-ID: 395474 [Multi-domain] Cd Length: 475 Bit Score: 97.92 E-value: 3.42e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 427 ISSGATGYVDYDW-DWHGEVPSVALAPNFDPNNWDAYTGAARVTSSATENDHRIKAGRFDASFMPESGFLTRIKGGVRAS 505
Cdd:pfam00593 9 LGDDTLLTLGYDYsRYTDGLDLGLTLDGYGNDGGYLGDRPLYYGRDYSDTDRKRLSLGYDYDLGDGLSWLSTLRLGLRYS 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 506 QADYRLRDNTLV----SDYDQRVAADKAKIIAANQACRAPFPQDDFMDAASGNTISSWAYFDPNclyqsfrgSLDSGLDP 581
Cdd:pfam00593 89 SLDGDYTSNSSGlsgaGDYLSDDRLYGLYGLDGDLELSLDLSHDLLLGVELRTAGLDYRRLDDD--------AYDPYDPA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 582 GFQDPNNVDITEKTRALYLMGEFSsslFGLPVTGNLGLRWVKTDVRSEGVRTGlriedngdgtirlqptgaysTQVFRAG 661
Cdd:pfam00593 161 NPSSSSYSDTTTDSYGLYLQDNIK---LTDRLTLTLGLRYDHYSTDGDDGNGG--------------------GDNFSRS 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 662 NDKLLPSLNAAFELRPDVLLRVGAYRAMSRPDIAALgagrtinvssdatYGNLADALDDISASGNPAAQPLMSWNGDLSL 741
Cdd:pfam00593 218 YSAFSPRLGLVYKPTDNLSLYASYSRGFRAPSLGEL-------------YGSGSGGGGGAVAGGNPDLKPETSDNYELGL 284
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 742 EWYPNpDTMLAGAVYWKQFNGgtatalvpETYTIDGQSVTVPVRQQVTTDEDSTLTGFELTATHRLsylpkpFDGLGFKV 821
Cdd:pfam00593 285 KYDDG-RLSLSLALFYIDIKN--------LITSDPDGPGLGGTVYTYTNVGKARIRGVELELSGRL------WGLGLSGG 349
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 822 SYNYADADYRTQDSRLGEQLAsdgtiipaivppaglsGFSRHVLSGSIYWDVGRFNIQAIGKFRSHYYQDFTGNTAQQNR 901
Cdd:pfam00593 350 GYTYTDADDDADADDTGNPLP----------------NVPRHTANLGLTYDFPLGGWGARLGARYVGSGERRYGDAANTF 413
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1349677838 902 YYDDNTSVDLRLRYRVNKQLSLSLELMNLTNEPRVAYQPLYGNFREVVT-YGRRAYFGVRYK 962
Cdd:pfam00593 414 KTPGYTLVDLSAGYRLNKNLTLRLGVNNLFDKYYKRYYSSGGGNLGGYPgPGRTFYLGLSYK 475
|
|
| FepA |
COG4771 |
Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and ... |
22-924 |
1.36e-19 |
|
Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and metabolism];
Pssm-ID: 443803 [Multi-domain] Cd Length: 612 Bit Score: 94.15 E-value: 1.36e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 22 LLAVLAGLPTAQAQSGKDAAGQDPTTLDQVQVTGIRESMqssinKKRDDTVIADVLSADDIGDLPAPSLADAIETLTG-- 99
Cdd:COG4771 1 LLLASLLLLLALAAQAADALAEDATELEEVVVTATRTEQ-----SLSDAPASVSVITAEEIEKLGATDLADALRLLPGvs 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 100 AASTRDKTGASEISIRGLGAFLSSTNFNGREITNGSGDRSVNFNMFPAELIntvaiyktQRADIIEGG---------VAG 170
Cdd:COG4771 76 VTRSGGRGGSSGISIRGLGGDRVLVLIDGVPVNNPALGGGGDLSYIPPDDI--------ERIEVIRGPasalygsdaIGG 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 171 TIGLETVRPLEYGKRAAQLDlrgswaeydkkYRDDDGIGYRGTASYidqfeFGNGQKLGISLGFQRLDGTDPEESITSGs 250
Cdd:COG4771 148 VINIITKKPTDELEGSVSLG-----------YGSNGNGTYSGSLSL-----GGPGDKLSFLLSGSYRDRDGYLDYRNGG- 210
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 251 twyacdgtqnvgnancnevsaqaiangapyylvpssriyRLKQERNDRQSEFAALQWRPNDLVEVNLDFEHTernwyenr 330
Cdd:COG4771 211 ---------------------------------------FVGNSGYERYNLNAKLGYRLSDNHRLSLSGGYS-------- 243
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 331 sdlslsnarrgitrrevDEDGIVRHLHGSTSIDSTSNRYWRGEEYTGGGLNLILRPTPAWELSTDLSYSHTNRldsermt 410
Cdd:COG4771 244 -----------------RQDRDGGPPTLGDTEISSDNAGDRDTTTDRGNYSLRYNGDLGDNLDLSLYYSRTDR------- 299
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 411 rlraNQRNVSNAIVPGissgatgyvdydwdwhgevpsvalapNFDPNNWDAYTGAARVTSSATENdHRIKAGrfdasfmp 490
Cdd:COG4771 300 ----DSTNGSLGGSTG--------------------------SFSDSDDTTYGLELDLTYPLGGN-HTLTLG-------- 340
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 491 esgfltrikggvrasqADYRLRDNtlvsdydqrvaadkakiiaanqacrapfpQDDFMDAASGNTISSWAYFdpnclyqs 570
Cdd:COG4771 341 ----------------AEYRYDDL-----------------------------DSSSFLGGADASRDTYGLF-------- 367
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 571 frgsldsgldpgFQDpnNVDITEKTRalylmgefssslfglpvtgnlglrwvktdvrsegVRTGLRIEdngdgtirlqpt 650
Cdd:COG4771 368 ------------AQD--EWKLTDKLT----------------------------------LTAGLRYD------------ 387
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 651 gaYSTQVFRAGNDKLLPSLNAAFELRPDVLLRVGAYRAMSRPDIAALGAGRTINVSSDATygnladalddisasGNPAAQ 730
Cdd:COG4771 388 --YYSTFGASNYTAFSPRLGLRYDLSDNLTLRASYGRGFRAPSLAELYGSGTGTPGRYVL--------------GNPDLK 451
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 731 PLMSWNGDLSLEWYPNPDTMLAGA-VYWKQFNGgtatALVPETYTIDGQSVTVPVRQqvttdEDSTLTGFELTATHRLSy 809
Cdd:COG4771 452 PETSDNYELGLEYRLGNGGLSLSLtGFYTDIKD----LIVLVPVGPGPGDVLQYENV-----GKARTYGLELELKYRLG- 521
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 810 lpkpfDGLGFKVSYNYADADYRTQDSRlgeqlasdgtiipaivppAGLSGFSRHVLSGSIYWDVGRFNiQAIGKFRSHYY 889
Cdd:COG4771 522 -----KGLTLTASYTYLDSKIDDGDTG------------------EPLPNVPPHKANLGLDYRLPKWW-LLLLLTRYYGG 577
|
890 900 910
....*....|....*....|....*....|....*
gi 1349677838 890 QDFTGNTAQQNRYYDDNTSVDLRLRYRVNKQLSLS 924
Cdd:COG4771 578 RYVTPPSGRLEGYTPGYTLLDLRASYKLTKNLTLS 612
|
|
| CirA |
COG1629 |
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism]; |
48-951 |
6.31e-16 |
|
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism];
Pssm-ID: 441236 [Multi-domain] Cd Length: 644 Bit Score: 82.18 E-value: 6.31e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 48 LDQVQVTGIRESMqssinKKRDDTVIADVLSADDIGDLPAPSLADAIETLTGAASTRDKTGASEISIRGLGAFLSSTNF- 126
Cdd:COG1629 1 LEEVVVTATRTDE-----SLQDVPGSVSVISREQLEDQPATDLGDLLRRVPGVSVTSAGGGAGQISIRGFGGGGNRVLVl 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 127 -NGREItNGSGDRSVNFNMFPAELINTVAIYK---TQRADIieGGVAGTIGLETVRPleygKRAAQLDLRGSWAEYDkky 202
Cdd:COG1629 76 vDGVPL-NDPSGGDGGLSYIDPEDIERVEVLRgpsSALYGS--GALGGVINIVTKKP----KDGKGGEVSASYGSYG--- 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 203 rdddgiGYRGTASyidqFEFGNGqKLGISLGFQRLDGtdpeesitsgstwyacDGTqnvgnancnevsaqaiangapyyl 282
Cdd:COG1629 146 ------TYRASLS----LSGGNG-KLAYRLSASYRDS----------------DGY------------------------ 174
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 283 vpssriyrLKQERNDRQSEFAALQWRPNDLVEVNLDFEHTERNWyenrsdlslsNARRGITRREVDEDGIVRHLHGSTSI 362
Cdd:COG1629 175 --------RDNSDSDRYNLRAKLGYQLGDDTRLTLSASYSDSDQ----------DSPGYLTLAALRPRGAMDDGTNPYSN 236
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 363 DSTSNRYWRGeeytggGLNLILRPTP-AWELSTDLSYSHTNRLDSERMTRLRANQRNVSNAIVPGISSGATGYVDYDWDW 441
Cdd:COG1629 237 DTDDNTRDRY------SLSLEYEHLGdGLKLSASAYYRYDDTDLDSDFTPTPADGGTLEQTDFDNRTYGLELRLTYDLGF 310
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 442 HGevpsvalapnfdpnnwdaytgaarvtssatenDHRIKAGrfdasfmpesgfltrikggvrasqADYRLRDNTLVSdyd 521
Cdd:COG1629 311 GG--------------------------------KHTLLVG------------------------LDYQRQDLDGSG--- 331
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 522 qrvaadkakiiaanqacrapfpqddfmdaasgntisswayfdpnclyqsFRGSLDSGLDPGFQDPNNVDITEKTRALYLM 601
Cdd:COG1629 332 -------------------------------------------------YPLDLGSGSLPTLTSGADDDGTTTSLALYAQ 362
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 602 GEFSsslFGLPVTGNLGLRWVKTDVRsegvrtglrIEDNGDGTIRLQPTGAYstqvfragnDKLLPSLNAAFELRPDVLL 681
Cdd:COG1629 363 DTYK---LTDKLTLTAGLRYDYVSYD---------VDDTVTGTDSASGSRSY---------SAFSPSLGLTYQLSPNLSL 421
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 682 RVGAYRAMSRPDIAALGAGRTinvssdatygnladaldDISASGNPAAQPLMSWNGDLSLEWYPNPDTMLA-GAVYWKQF 760
Cdd:COG1629 422 YASYSRGFRAPTFGELYANGT-----------------DPYSVGNPDLKPETSTNYELGLRYRLLDGRLSLsLALFYSDV 484
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 761 NGGTATALVPETYTIDGQSVTVPvrqqvttdeDSTLTGFELTATHRLSylpkpfDGLGFKVSYNYADADYRTQDsrlGEQ 840
Cdd:COG1629 485 DNEILSVPLPNDSGFSTYYTNAG---------KARSYGVELELSYQLT------PGLSLNASYSYTDAKFDDDT---DGS 546
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 841 LASDGTIIPAIVPPAGLSGFSrhvlsgsiYWDVGRFNIQAIGKFRSHYYQDFTgNTAQQNRYYddnTSVDLRLRYRVNKQ 920
Cdd:COG1629 547 ADLDGNRLPGVPPLTANLGLT--------YEFPGGWSLGLGVRYVGDRYLDDA-NTQGAPGGY---TLVDLGAGYRFGDN 614
|
890 900 910
....*....|....*....|....*....|.
gi 1349677838 921 LSLSLELMNLTNepRVAYQPLYGNFREVVTY 951
Cdd:COG1629 615 LTLSLGVDNLFD--KKYATSLSVRASNVRGF 643
|
|
| FecA |
COG4772 |
Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism]; |
568-963 |
2.25e-11 |
|
Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism];
Pssm-ID: 443804 [Multi-domain] Cd Length: 681 Bit Score: 67.65 E-value: 2.25e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 568 YQSFRGSLDSGLDpGFQDPNNVDITEKTRALYLMGEFSsslfglpVTGNL----GLRWVktDVRSEgvRTGLRIEDNGDG 643
Cdd:COG4772 354 RKQYVNTYGQGRS-GAGLRRDRRFSADALAAYAQNRFE-------LTGRLtltpGLRYE--HIRRD--RTDRYSTRTGGD 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 644 TIRlqptgaystqvfRAGNDKLLPSLNAAFELRPDVLLRVGAYRAMSRPDIaalgagrtinvsSDATYGNladalddisa 723
Cdd:COG4772 422 DSG------------SNSYSEFLPGLGLLYQLTDNLQLYANVSRGFEPPTF------------GDLAYGN---------- 467
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 724 SGNPAAQPLMSWNGDLSLEWYPNPDTMLAGAVYWKQFNGgtatalvpetyTIDGQSVTVPVRQQVTTDEDSTLTGFELTA 803
Cdd:COG4772 468 GGNPDLKPEKSWNYELGTRGRIGNGLSAEVALFYIDYDN-----------ELGSCSAAGGDRSTFTNAGETRHQGLELAL 536
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 804 THRLsyLPKPFDGLGFKVSYNYADAdyrTQDSRLGEQLAsdGTIIPAIvppaglsgfSRHVLSGSIYWDVGRFNIQAIGK 883
Cdd:COG4772 537 DYDL--LKGGGLGLPLFAAYTYTDA---EFTSDFGPVFA--GNRLPYV---------PRHQLTAGLGYEHGGWTANLNGR 600
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 884 FRSHYYQDFtGNTAQQNRYY--DDNTSVDLRLRYRVNKQLSLSLELMNLTNEprvAYqplYGNFREVVTYG------RRA 955
Cdd:COG4772 601 YVSEQFTDA-ANTVADGSFGkiPSYTVLDLSASYDFGKNLSLFAGVNNLFDK---RY---IASRAPNYAAGirpgppRTV 673
|
....*...
gi 1349677838 956 YFGVRYKF 963
Cdd:COG4772 674 YAGLRLKF 681
|
|
| Plug |
pfam07715 |
TonB-dependent Receptor Plug Domain; The Plug domain has been shown to be an independently ... |
66-157 |
5.65e-11 |
|
TonB-dependent Receptor Plug Domain; The Plug domain has been shown to be an independently folding subunit of the TonB-dependent receptors. It acts as the channel gate, blocking the pore until the channel is bound by ligand. At this point it under goes conformational changes opens the channel.
Pssm-ID: 462243 [Multi-domain] Cd Length: 107 Bit Score: 60.36 E-value: 5.65e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 66 KKRDDTVIADVLSADDIGDLPAPSLADAIETLTG-AASTRDKTGASEISIRGLGAFLSSTNFNGREItNGSGDRSVNFNM 144
Cdd:pfam07715 1 DLRDTPGSVSVVTAEDIEDQGATNLADALRGVPGvSVSSGGGGGGSSISIRGFGSNRVLVLVDGVPL-NSGGGGSVDLNS 79
|
90
....*....|...
gi 1349677838 145 FPAELINTVAIYK 157
Cdd:pfam07715 80 IDPEDIERVEVLK 92
|
|
| BtuB |
COG4206 |
Outer membrane cobalamin receptor protein BtuB [Coenzyme transport and metabolism]; |
51-348 |
8.21e-10 |
|
Outer membrane cobalamin receptor protein BtuB [Coenzyme transport and metabolism];
Pssm-ID: 443355 [Multi-domain] Cd Length: 276 Bit Score: 60.66 E-value: 8.21e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 51 VQVTGIRESMqssinKKRDDTVIADVLSADDIGDLPAPSLADAIETLTG--AASTRDKTGASEISIRGLGAflSSTNF-- 126
Cdd:COG4206 1 VVVTATRLEQ-----SKSDLTGSVTVIDAEELERSGATSLADALRRVPGvqVSSSGGPGSAASISIRGLGS--NQTLVli 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 127 NGREItNGSGDRSVNFNMFPAELINTVAIYKTQRADII-EGGVAGTIGLETVRpleyGKRAAQLDLRGSWAEYDkkyrdd 205
Cdd:COG4206 74 DGVPL-NDPSLGGVDLSLIPPDDIERIEVLKGAASALYgSDAIGGVINITTKK----GKKGFKGSVSASYGSFG------ 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 206 dgiGYRGTASYidQFEFGNGQkLGISLGFQRLDGTDPEESITSGSTWYacdgTQNVGNANCNEVSAQAIANGAPYYLVPS 285
Cdd:COG4206 143 ---TRRLSASL--SGGAGKFS-YSLSASYRRSDGYRYNDPDLRNNDGY----ENTSLNARLGYKLGDNGSLSLSGGYSDS 212
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1349677838 286 SRIYRLKQERNDRQSEFAALQWRPNDLVEVNLDFEHTERNWYENRSDLSLSNARRGITRREVD 348
Cdd:COG4206 213 ERGYPGAVGSDRNLRLSLSLEYKLSDGWSLLLLAYYYYDRDYEDGGGDSAGTSNTDGARAGLS 275
|
|
| FhuE |
COG4773 |
Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion ... |
21-963 |
3.22e-09 |
|
Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion transport and metabolism];
Pssm-ID: 443805 [Multi-domain] Cd Length: 692 Bit Score: 60.68 E-value: 3.22e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 21 ALLAV--LAGLPTAQAQSGKDAAGQDPTTLDQVQVTGIRESMQSSINKK-----RDDTVIAD------VLSADDIGDLPA 87
Cdd:COG4773 3 ALLAGsgLAAAAAGALAQAAAAAAAEATTLPEVTVTGTAEGTGGYTAKSsstatKLDTPLREtpqsvsVVTRQLIEDQGA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 88 PSLADAIETLTGA-ASTRDKTGASEISIRGLGAflSSTNFNGReitngsgdRSVNFNMFPAELINTvaiyktQRADII-- 164
Cdd:COG4773 83 TTLDDALRNVPGVtVSSYDGGGRDSFSIRGFSI--DNYLRDGL--------PLGGFGGGQPDTANL------ERVEVLkg 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 165 -------EGGVAGTIGLETVRPLEYGKRAAQLDLrGSWAeydkKYR----------DDDGIGYRGTASYIDqfefGNGQk 227
Cdd:COG4773 147 pagllygAGSPGGLVNLVTKRPTAEPQGEVSLSA-GSWD----TYRatadvggplnEDGTLRYRLNAAYED----GDSF- 216
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 228 lgislgfqrLDGTDpeesitsgstwyacdgtqnvgnancnevsaqaiangapyylvpssriyrlkqerNDRQSEFAALQW 307
Cdd:COG4773 217 ---------RDGVD------------------------------------------------------NRRTLIAPSLDW 233
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 308 RPNDLVEVNLDFEHTERNWYENRSDLSLSNARRGITRrevdedgivrhlhgSTSIDSTSNRYWRgeEYTGGGLNLILRPT 387
Cdd:COG4773 234 DLTDDTTLTLGAEYQDDDSTGDRGFLPLDGTLLDLPR--------------STNLGEPWDYYDT--ETTTLFAELEHRFN 297
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 388 PAWELSTDLSYSHTNRldsermtrlraNQRNVSNAIVPGISSGATGYVDYDWDwhgevpsvalapnfdpNNWDAYTGAAR 467
Cdd:COG4773 298 DDWSLRANARYSDSDR-----------DGRSAYAYGAPDAATGTLTRYASARD----------------GDSRSDSLDAN 350
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 468 VTssatendhrikaGRFDAsfmpesgfltrikGGVRasqadyrlrdNTLV--SDYDQrvaadkakiiaanqacrapfpQD 545
Cdd:COG4773 351 LN------------GKFET-------------GGLE----------HTLLvgADYSR---------------------YD 374
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 546 DFMDAASGNTISswaYFDPNclYQSFRgsldsglDPGFQDPNNvDITEKTRALYLMGEFSsslFGLPVTGNLGLRWVKTD 625
Cdd:COG4773 375 SDSDSATAGTIN---IYNPV--YGNLP-------EPDFDASDT-DTTTRQTGLYAQDQIS---LTDRLSLLLGGRYDWYE 438
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 626 VRSEGVRTGLRIEDNgdgtirlqptgaystqvfragNDKLLPSLNAAFELRPDVLLrvgaYramsrpdiaalgagrtinv 705
Cdd:COG4773 439 TDSTNRLGGSTTSYD---------------------DSAFTPRAGLVYDLTPGLSL----Y------------------- 474
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 706 ssdATYGNLADALDDISASGNPAAqPLMSWN---GdLSLEWyPNPDTMLAGAVYW-KQFNGGTATALVPETYTIDGQSVT 781
Cdd:COG4773 475 ---ASYSESFEPQSGADNNGNPLD-PETGKQyeaG-VKGEL-FDGRLNATLAVFDiTQKNVATTDPDNPNFYVQVGEVRS 548
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 782 vpvrqqvttdedstlTGFELTATHRLSylpkpfDGLGFKVSYNYADADY-RTQDSRLGEQLASdgtiipaiVPPAGLSGF 860
Cdd:COG4773 549 ---------------RGVELELSGELT------PGLNLIAGYTYTDAKItKDADALEGKRLTN--------VPRHTASLW 599
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 861 SRHVLSGsiyWDVGRFNIQAIGKFRSHYYQDFTgNTAQQnryyDDNTSVDLRLRYRVNKQLSLSLELMNLTNepRVAYQP 940
Cdd:COG4773 600 TTYRFPS---GALKGLGLGGGVRYVGERYGDAA-NTFTL----PSYTLVDAGARYDLGKNWTLQLNVNNLFD--KKYYAS 669
|
970 980
....*....|....*....|...
gi 1349677838 941 LYGNFREVVTYGRRAYFGVRYKF 963
Cdd:COG4773 670 SGSRGYVYYGAPRNVRLSLSYKF 692
|
|
| TonB-siderophor |
TIGR01783 |
TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of ... |
774-963 |
6.40e-05 |
|
TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]
Pssm-ID: 273805 [Multi-domain] Cd Length: 651 Bit Score: 46.64 E-value: 6.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 774 TIDGQSVTVPVRQQVTTDEDSTL-TGFELTATHRLSylpkpfDGLGFKVSYNYADADYRTqdsrlGEQLASDGTIIPaIV 852
Cdd:TIGR01783 479 TKDNQLVQDPVNGTFSVNAGKTRnRGVELEARGYLT------PGLSLSAGYTYTDAEFTE-----DTNGDTQGNTVP-FV 546
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 853 PPAGLSGFsrhvLSGSIYWDVGRFNIQAIGKFRSHYYQDfTGNTAQQNRYyddnTSVDLRLRYRVNKQLSLSLELM--NL 930
Cdd:TIGR01783 547 PKHTASLW----ASYAPPVGDNGLTLGGGVQYTGKAYVD-GGNTGKVPSY----TVVDLSVRYDLTKKKNLTLALNvnNL 617
|
170 180 190
....*....|....*....|....*....|....*..
gi 1349677838 931 TNEprvAYQPLYGNF-REVVTY---GRRAYFGVRYKF 963
Cdd:TIGR01783 618 FDR---DYYTSGYRWgPSAYIYpgaPRTVGLSVSYDF 651
|
|
| Fiu |
COG4774 |
Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism]; |
745-963 |
6.54e-05 |
|
Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism];
Pssm-ID: 443806 [Multi-domain] Cd Length: 639 Bit Score: 46.79 E-value: 6.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 745 PNPDTMLAGAVYW-KQFNGGTATALVPETYTIDGqsvtvpvRQQVTtdedstltGFELTATHRLSylpkpfDGLGFKVSY 823
Cdd:COG4774 460 LDGRLSLTAALFRiEKTNVRTTDPANPGVYVQTG-------EQRSR--------GVELEATGELT------PGWSVLAGY 518
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 824 NYADADYR--TQDSRLGEQLAsdgtiipaivppaglsGFSRHVLSGSIYWDVGRFNIQAIG--KFRSHYYQDfTGNTAqq 899
Cdd:COG4774 519 TYLDAEITksANAANVGNRLP----------------NVPRHSASLWTTYDLPLPGLTLGGgvRYVGSRYAD-AANTV-- 579
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1349677838 900 nrYYDDNTSVDLRLRYRVNKQLSLSLELMNLTNEprVAYQPLYGNFRevVTYG--RRAYFGVRYKF 963
Cdd:COG4774 580 --KLPSYTRFDAGASYRLNKNLTLRLNVNNLTDK--RYYASAYGSGY--VTPGapRTVLLSASYRF 639
|
|
| PRK13484 |
PRK13484 |
IreA family TonB-dependent siderophore receptor; |
822-963 |
6.89e-05 |
|
IreA family TonB-dependent siderophore receptor;
Pssm-ID: 139605 [Multi-domain] Cd Length: 682 Bit Score: 46.92 E-value: 6.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 822 SYNYADADYRTQDSRL-GEQLASDgtiiPAIVPPaglsgfsRHVLSGSIYWDVGrfniQAIGKFRSHYYQDFTGNTAQQN 900
Cdd:PRK13484 552 NYTFTDSRRKSDDESLnGKSLKGE----PLERTP-------RHAANAKLEWDYT----QDITFYSSLNYTGKQIWAAQRN 616
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1349677838 901 -----RYYDDNTSVDLRLRYRVNKQLSLSLELMNLTNEPRVAYQPLYGNFreVVTYGRRAYFGVRYKF 963
Cdd:PRK13484 617 gakvpRVRNGFTSMDIGLNYQILPDTLINFAVLNVTDRKSEDIDTIDGNW--QVDEGRRYWANVRVSF 682
|
|
| PRK13483 |
PRK13483 |
ligand-gated channel protein; |
725-963 |
4.84e-04 |
|
ligand-gated channel protein;
Pssm-ID: 184080 [Multi-domain] Cd Length: 660 Bit Score: 44.00 E-value: 4.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 725 GNPAAQPLMSWNGDLSLeWYPNPDTMLAGA-VYWKQFNGGTATALVPETYTIDG--QSVTVPVrQQVTTDEDSTlTGFEL 801
Cdd:PRK13483 451 GNPDLKPETSLNKELGL-YYDLGSGLTASLtVFYNEFKDKITRVACPATQCTDGpnQFGADPT-TYVNIDEAVT-QGVEA 527
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 802 TATHRLSylpkpfDGLGFKVSYNYADADYRTqdsrlGEQLASDGTIIPaivppaglsgfsRHVLSGSIYWD-VGRFNIQA 880
Cdd:PRK13483 528 SLSYPIT------STLSLSGNYTYTDSEQKS-----GAYKGSPLNQLP------------KHLFQASLNWEpTDRLNSWA 584
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1349677838 881 IGKFRSHYYQDFTG---NTAQQNRYyddnTSVDLRLRYRVNKQLSLSLELMNLTNEpRVAYQPlYGnfreVVTYGRRAYF 957
Cdd:PRK13483 585 RVNYRGEESQPTTGpssSSFIAPSY----TFLDLGANYQLTDNLKLSAGIYNLFDK-EINYEE-YG----YVEDGRRYWL 654
|
....*.
gi 1349677838 958 GVRYKF 963
Cdd:PRK13483 655 GMTYSF 660
|
|
| |
