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Conserved domains on  [gi|1343484522|gb|PPC74904|]
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ATPase [Pokkaliibacter plantistimulans]

Protein Classification

ATP-binding protein( domain architecture ID 10529364)

ATP-binding protein with an AAA (ATPases Associated with various cellular Activities) domain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF815 pfam05673
Protein of unknown function (DUF815); This family consists of several bacterial proteins of ...
 8-255 3.34e-137

Protein of unknown function (DUF815); This family consists of several bacterial proteins of unknown function.


:

Pssm-ID: 428578 [Multi-domain]  Cd Length: 250  Bit Score: 386.12  E-value: 3.34e-137
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1343484522   8 TTYAAVWR-AHTHQLRPISRLDPVRLTSLLGVERQKQALLSNTQHFLQGQPSNHTLLWGSRGTGKSSLIKALLNELAPQG 86
Cdd:pfam05673   2 AAPAFRWRrGESGALEPVPHPDPVRLDDLVGIERQKEALIRNTRRFLAGLPANNVLLWGARGTGKSSLVKALLNEYADQG 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1343484522  87 LRIVQVDKEDLLWLPEILDLLEAEPYRFIIFCDDMSFEEGEVGYKPLKSILEGGLELPPEHVRIYATSNRRHLLPEHMSD 166
Cdd:pfam05673  82 LRLIEVDKEDLGDLPDLVDLLRDRPYRFILFCDDLSFEEGESSYKALKSVLEGGLEARPDNVLIYATSNRRHLIPEYMSD 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1343484522 167 NQqtQVVDGEIHYADAVEDKMALSDRFGLWLSFYPASWDTYFTMVDQLFG--DVNTDRSALHQAARLFAMGRASHSGRTA 244
Cdd:pfam05673 162 NE--GLVDGEIHPGDAVEEKLSLSDRFGLWLGFYPFDQDEYLAIVRGYAArlGLPLDEEELRREALQWALTRGGRSGRTA 239

                         250
                  ....*....|.
gi 1343484522 245 KQFYQHYLATL 255
Cdd:pfam05673 240 RQFIDDLAGRL 250
 
Name Accession Description Interval E-value
DUF815 pfam05673
Protein of unknown function (DUF815); This family consists of several bacterial proteins of ...
 8-255 3.34e-137

Protein of unknown function (DUF815); This family consists of several bacterial proteins of unknown function.


Pssm-ID: 428578 [Multi-domain]  Cd Length: 250  Bit Score: 386.12  E-value: 3.34e-137
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1343484522   8 TTYAAVWR-AHTHQLRPISRLDPVRLTSLLGVERQKQALLSNTQHFLQGQPSNHTLLWGSRGTGKSSLIKALLNELAPQG 86
Cdd:pfam05673   2 AAPAFRWRrGESGALEPVPHPDPVRLDDLVGIERQKEALIRNTRRFLAGLPANNVLLWGARGTGKSSLVKALLNEYADQG 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1343484522  87 LRIVQVDKEDLLWLPEILDLLEAEPYRFIIFCDDMSFEEGEVGYKPLKSILEGGLELPPEHVRIYATSNRRHLLPEHMSD 166
Cdd:pfam05673  82 LRLIEVDKEDLGDLPDLVDLLRDRPYRFILFCDDLSFEEGESSYKALKSVLEGGLEARPDNVLIYATSNRRHLIPEYMSD 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1343484522 167 NQqtQVVDGEIHYADAVEDKMALSDRFGLWLSFYPASWDTYFTMVDQLFG--DVNTDRSALHQAARLFAMGRASHSGRTA 244
Cdd:pfam05673 162 NE--GLVDGEIHPGDAVEEKLSLSDRFGLWLGFYPFDQDEYLAIVRGYAArlGLPLDEEELRREALQWALTRGGRSGRTA 239

                         250
                  ....*....|.
gi 1343484522 245 KQFYQHYLATL 255
Cdd:pfam05673 240 RQFIDDLAGRL 250
Atu1564 COG2607
Predicted ATPase, AAA+ superfamily [General function prediction only];
4-256 1.04e-136

Predicted ATPase, AAA+ superfamily [General function prediction only];


Pssm-ID: 442019  Cd Length: 286  Bit Score: 385.99  E-value: 1.04e-136
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1343484522   4 VNWKTTYAAVWRAHTH--QLRPISRLDPVRLTSLLGVERQKQALLSNTQHFLQGQPSNHTLLWGSRGTGKSSLIKALLNE 81
Cdd:COG2607    28 PDFAAADAFRWRRRGGggRLEPVPHPDPIRLDDLVGIERQKEILIRNTEQFLAGLPANNVLLWGARGTGKSSLVKALLNE 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1343484522  82 LAPQGLRIVQVDKEDLLWLPEILDLLEAEPYRFIIFCDDMSFEEGEVGYKPLKSILEGGLELPPEHVRIYATSNRRHLLP 161
Cdd:COG2607   108 YADQGLRLIEVDKEDLADLPDIVELLRGRPERFIIFCDDLSFEEDETSYKALKAVLEGGLEARPDNVLIYATSNRRHLMP 187

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1343484522 162 EHMSDNQQTqvVDGEIHYADAVEDKMALSDRFGLWLSFYPASWDTYFTMVDQL---FGdVNTDRSALHQAARLFAMGRAS 238
Cdd:COG2607   188 EYMSDNERP--VDGEIHPGEAVEEKLSLSDRFGLWLGFYPPDQDEYLAIVRHLaahFG-LDIDDEELRREALQWALTRGG 264

                         250
                  ....*....|....*...
gi 1343484522 239 HSGRTAKQFYQHYLATLQ 256
Cdd:COG2607   265 RSGRVAWQFIDDLAGRLG 282
AAA cd00009
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ...
 37-164 9.36e-10

The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.


Pssm-ID: 99707 [Multi-domain]  Cd Length: 151  Bit Score: 56.00  E-value: 9.36e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1343484522  37 GVERQKQALLSntqhFLQGQPSNHTLLWGSRGTGKSSLIKALLNELAPQGLRIVQVDKEDLL-----------WLPEILD 105
Cdd:cd00009     2 GQEEAIEALRE----ALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLeglvvaelfghFLVRLLF 77

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1343484522 106 LLEAEPYRFIIFCDDMSFEEGEVGYKpLKSILEGGLELP--PEHVRIYATSNRRHLLPEHM 164
Cdd:cd00009    78 ELAEKAKPGVLFIDEIDSLSRGAQNA-LLRVLETLNDLRidRENVRVIGATNRPLLGDLDR 137
DnaA_homol_Hda TIGR03420
DnaA regulatory inactivator Hda; Members of this protein family are Hda (Homologous to DnaA). ...
 44-109 2.30e-03

DnaA regulatory inactivator Hda; Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 274571 [Multi-domain]  Cd Length: 226  Bit Score: 38.32  E-value: 2.30e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1343484522  44 ALLSNTQHFLQGQPSNHTLLWGSRGTGKSSLIKALLNELAPQGLRIVQVD-KEDLLWLPEILDLLEA 109
Cdd:TIGR03420  24 ELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPlAELAQADPEVLEGLEQ 90
PRK04195 PRK04195
replication factor C large subunit; Provisional
 29-82 9.84e-03

replication factor C large subunit; Provisional


Pssm-ID: 235250 [Multi-domain]  Cd Length: 482  Bit Score: 36.82  E-value: 9.84e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1343484522  29 PVRLTSLLGVERQKQALLSNTQHFLQGQPSNHTLLWGSRGTGKSSLIKALLNEL 82
Cdd:PRK04195   10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY 63
 
Name Accession Description Interval E-value
DUF815 pfam05673
Protein of unknown function (DUF815); This family consists of several bacterial proteins of ...
 8-255 3.34e-137

Protein of unknown function (DUF815); This family consists of several bacterial proteins of unknown function.


Pssm-ID: 428578 [Multi-domain]  Cd Length: 250  Bit Score: 386.12  E-value: 3.34e-137
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1343484522   8 TTYAAVWR-AHTHQLRPISRLDPVRLTSLLGVERQKQALLSNTQHFLQGQPSNHTLLWGSRGTGKSSLIKALLNELAPQG 86
Cdd:pfam05673   2 AAPAFRWRrGESGALEPVPHPDPVRLDDLVGIERQKEALIRNTRRFLAGLPANNVLLWGARGTGKSSLVKALLNEYADQG 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1343484522  87 LRIVQVDKEDLLWLPEILDLLEAEPYRFIIFCDDMSFEEGEVGYKPLKSILEGGLELPPEHVRIYATSNRRHLLPEHMSD 166
Cdd:pfam05673  82 LRLIEVDKEDLGDLPDLVDLLRDRPYRFILFCDDLSFEEGESSYKALKSVLEGGLEARPDNVLIYATSNRRHLIPEYMSD 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1343484522 167 NQqtQVVDGEIHYADAVEDKMALSDRFGLWLSFYPASWDTYFTMVDQLFG--DVNTDRSALHQAARLFAMGRASHSGRTA 244
Cdd:pfam05673 162 NE--GLVDGEIHPGDAVEEKLSLSDRFGLWLGFYPFDQDEYLAIVRGYAArlGLPLDEEELRREALQWALTRGGRSGRTA 239

                         250
                  ....*....|.
gi 1343484522 245 KQFYQHYLATL 255
Cdd:pfam05673 240 RQFIDDLAGRL 250
Atu1564 COG2607
Predicted ATPase, AAA+ superfamily [General function prediction only];
4-256 1.04e-136

Predicted ATPase, AAA+ superfamily [General function prediction only];


Pssm-ID: 442019  Cd Length: 286  Bit Score: 385.99  E-value: 1.04e-136
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1343484522   4 VNWKTTYAAVWRAHTH--QLRPISRLDPVRLTSLLGVERQKQALLSNTQHFLQGQPSNHTLLWGSRGTGKSSLIKALLNE 81
Cdd:COG2607    28 PDFAAADAFRWRRRGGggRLEPVPHPDPIRLDDLVGIERQKEILIRNTEQFLAGLPANNVLLWGARGTGKSSLVKALLNE 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1343484522  82 LAPQGLRIVQVDKEDLLWLPEILDLLEAEPYRFIIFCDDMSFEEGEVGYKPLKSILEGGLELPPEHVRIYATSNRRHLLP 161
Cdd:COG2607   108 YADQGLRLIEVDKEDLADLPDIVELLRGRPERFIIFCDDLSFEEDETSYKALKAVLEGGLEARPDNVLIYATSNRRHLMP 187

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1343484522 162 EHMSDNQQTqvVDGEIHYADAVEDKMALSDRFGLWLSFYPASWDTYFTMVDQL---FGdVNTDRSALHQAARLFAMGRAS 238
Cdd:COG2607   188 EYMSDNERP--VDGEIHPGEAVEEKLSLSDRFGLWLGFYPPDQDEYLAIVRHLaahFG-LDIDDEELRREALQWALTRGG 264

                         250
                  ....*....|....*...
gi 1343484522 239 HSGRTAKQFYQHYLATLQ 256
Cdd:COG2607   265 RSGRVAWQFIDDLAGRLG 282
AAA cd00009
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ...
 37-164 9.36e-10

The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.


Pssm-ID: 99707 [Multi-domain]  Cd Length: 151  Bit Score: 56.00  E-value: 9.36e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1343484522  37 GVERQKQALLSntqhFLQGQPSNHTLLWGSRGTGKSSLIKALLNELAPQGLRIVQVDKEDLL-----------WLPEILD 105
Cdd:cd00009     2 GQEEAIEALRE----ALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLeglvvaelfghFLVRLLF 77

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1343484522 106 LLEAEPYRFIIFCDDMSFEEGEVGYKpLKSILEGGLELP--PEHVRIYATSNRRHLLPEHM 164
Cdd:cd00009    78 ELAEKAKPGVLFIDEIDSLSRGAQNA-LLRVLETLNDLRidRENVRVIGATNRPLLGDLDR 137
AAA_16 pfam13191
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ...
 35-182 1.37e-04

AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.


Pssm-ID: 433025 [Multi-domain]  Cd Length: 167  Bit Score: 41.34  E-value: 1.37e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1343484522  35 LLGVERQKQALLSNTQHFLQGQPsNHTLLWGSRGTGKSSLIKALLNELAPQGLRIVQVDKEDLLWLPEILDLLEAEPyRF 114
Cdd:pfam13191   2 LVGREEELEQLLDALDRVRSGRP-PSVLLTGEAGTGKTTLLRELLRALERDGGYFLRGKCDENLPYSPLLEALTREG-LL 79

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1343484522 115 IIFCDDMSFEEGEVGYKPLKSILEGGLELPPEHvriyaTSNRRHLLPEHMSDNQQTQ-----VVDgEIHYADA 182
Cdd:pfam13191  80 RQLLDELESSLLEAWRAALLEALAPVPELPGDL-----AERLLDLLLRLLDLLARGErplvlVLD-DLQWADE 146
AAA pfam00004
ATPase family associated with various cellular activities (AAA); AAA family proteins often ...
 62-162 2.83e-04

ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.


Pssm-ID: 459627 [Multi-domain]  Cd Length: 130  Bit Score: 39.88  E-value: 2.83e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1343484522  62 LLWGSRGTGKSSLIKALLNELapqGLRIVQVDKEDLL--WLPE----ILDLLEA--EPYRFIIFCDDM-------SFEEG 126
Cdd:pfam00004   2 LLYGPPGTGKTTLAKAVAKEL---GAPFIEISGSELVskYVGEsekrLRELFEAakKLAPCVIFIDEIdalagsrGSGGD 78

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1343484522 127 EVGYKPLKSILE--GGLELPPEHVRIYATSNRRHLLPE 162
Cdd:pfam00004  79 SESRRVVNQLLTelDGFTSSNSKVIVIAATNRPDKLDP 116
CDC6 COG1474
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair];
35-82 3.11e-04

Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair];


Pssm-ID: 441083 [Multi-domain]  Cd Length: 389  Bit Score: 41.37  E-value: 3.11e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1343484522  35 LLGVERQKQALLSNTQHFLQGQPSNHTLLWGSRGTGKSSLIKALLNEL 82
Cdd:COG1474    28 LPHREEEIEELASALRPALRGERPSNVLIYGPTGTGKTAVAKYVLEEL 75
DnaA_homol_Hda TIGR03420
DnaA regulatory inactivator Hda; Members of this protein family are Hda (Homologous to DnaA). ...
 44-109 2.30e-03

DnaA regulatory inactivator Hda; Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 274571 [Multi-domain]  Cd Length: 226  Bit Score: 38.32  E-value: 2.30e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1343484522  44 ALLSNTQHFLQGQPSNHTLLWGSRGTGKSSLIKALLNELAPQGLRIVQVD-KEDLLWLPEILDLLEA 109
Cdd:TIGR03420  24 ELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPlAELAQADPEVLEGLEQ 90
SpoVK COG0464
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ...
 22-98 2.62e-03

AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];


Pssm-ID: 440232 [Multi-domain]  Cd Length: 397  Bit Score: 38.74  E-value: 2.62e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1343484522  22 RPISRLDPVRLTSLLGVERQKQALLSNTQHFLQG---------QPSNHTLLWGSRGTGKSSLIKALLNELapqGLRIVQV 92
Cdd:COG0464   146 EELLELREAILDDLGGLEEVKEELRELVALPLKRpelreeyglPPPRGLLLYGPPGTGKTLLARALAGEL---GLPLIEV 222


                  ....*.
gi 1343484522  93 DKEDLL 98
Cdd:COG0464   223 DLSDLV 228
CLP1_P pfam16575
mRNA cleavage and polyadenylation factor CLP1 P-loop; CLP1_P is the P-loop carrying domain of ...
 65-93 3.70e-03

mRNA cleavage and polyadenylation factor CLP1 P-loop; CLP1_P is the P-loop carrying domain of Clp1 mRNA cleavage and polyadenylation factor, Clp1, proteins in eukaryotes. Clp1 is essential for 3'-end processing of mRNAs. This region carries the P-loop suggesting it is the region that binds adenine or guanine nucleotide.


Pssm-ID: 406878  Cd Length: 187  Bit Score: 37.23  E-value: 3.70e-03
                          10        20
                  ....*....|....*....|....*....
gi 1343484522  65 GSRGTGKSSLIKALLNELAPQGLRIVQVD 93
Cdd:pfam16575   1 GPKDSGKSTLCRILLNYAVRKGRKPVYVD 29
AAA_14 pfam13173
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ...
 65-166 7.42e-03

AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.


Pssm-ID: 463799 [Multi-domain]  Cd Length: 128  Bit Score: 35.64  E-value: 7.42e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1343484522  65 GSRGTGKSSLIKALLNELAPQGlRIVQVDKEDLLWL----PEILDLL--EAEPYRFIIFCDdmsfeegEVGYKP-----L 133
Cdd:pfam13173   9 GPRQVGKTTLLLQLIKELLPPE-NILYINLDDPRLLkladFELLELFleLLYPGKTYLFLD-------EIQRVPdwelaL 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1343484522 134 KSILEGGLELppehvRIYAT-SNRRHLLPEHMSD 166
Cdd:pfam13173  81 KRLYDDGPNG-----RVILTgSSALLLSKEIAES 109
PRK04195 PRK04195
replication factor C large subunit; Provisional
 29-82 9.84e-03

replication factor C large subunit; Provisional


Pssm-ID: 235250 [Multi-domain]  Cd Length: 482  Bit Score: 36.82  E-value: 9.84e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1343484522  29 PVRLTSLLGVERQKQALLSNTQHFLQGQPSNHTLLWGSRGTGKSSLIKALLNEL 82
Cdd:PRK04195   10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY 63
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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