|
Name |
Accession |
Description |
Interval |
E-value |
| Ubl_RB1CC1 |
cd17060 |
ubiquitin-like (Ubl) domain found in retinoblastoma 1-inducible coiled-coil protein 1 (RB1CC1) ... |
2-76 |
3.85e-40 |
|
ubiquitin-like (Ubl) domain found in retinoblastoma 1-inducible coiled-coil protein 1 (RB1CC1) and similar proteins; RB1CC1, also termed FAK family kinase-interacting protein of 200 kDa (FIP200), is the mammalian counterpart of the yeast Atg17 gene and functions as a component of the ULK1/Atg13/RB1CC1/Atg101 complex essential for induction of autophagy. RB1CC1 is a key signaling node to regulate cellular proliferation and differentiation. As a DNA-binding transcription factor, RB1CC1 has been implicated in the regulation of retinoblastoma 1 (RB1) expression. RB1CC1 contains a conserved ubiquitin-like (Ubl) domain with a beta-grasp Ubl fold, as well as a nuclear localization signal (KPRK), a leucine zipper motif and a coiled-coil structure.
Pssm-ID: 340580 Cd Length: 75 Bit Score: 143.09 E-value: 3.85e-40
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 134304842 2 KLYVFLVNTGTTLTFDTELTVQTVADLKHAIQSKYKIAIQHQVLVVNGGECMAADRRVCTYSAGTDTNPIFLFNK 76
Cdd:cd17060 1 MLYVFLVNTGTMLTFDMSLAVQSVSDLKEAIEEKTKIPVEKQVLLVSGGESLDPDKRVSSYSAGTDTNPIFLFNK 75
|
|
| ATG11 |
pfam10377 |
Autophagy-related protein 11; The function of this family is conflicting. In the fission yeast, ... |
1439-1588 |
1.45e-27 |
|
Autophagy-related protein 11; The function of this family is conflicting. In the fission yeast, Schizosaccharomyces pombe, this protein has been shown to interact with the telomere cap complex and it is also required for dimerization and kinase activation of Atg1. However, in budding yeast, Saccharomyces cerevisiae, this protein is called ATG11 and is shown to be involved in autophagy.
Pssm-ID: 463063 Cd Length: 130 Bit Score: 109.23 E-value: 1.45e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1439 ETSMMSVQENIHMLS-----EEKQRIMLLERTLQLKEEenkrlnqrlmsqsmssvssrhseKIAIRDFQVGDLVLIILDE 1513
Cdd:pfam10377 1 ESAVIKRFKDVETLAkkltkENKSKREKLEKLQSEAHE-----------------------KITLKNFKVGDLALFLPTR 57
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1514 RHDN-----YVLFTVSPTLYFLHSESLPALdlkpgegasgaSRRPWVLGKVMEKEYCQAK---KAQNRFKVPLGTKFYRV 1585
Cdd:pfam10377 58 RHNDlstppWAAFNVGAPHYFLKADSLLAL-----------KSREWFVGRITSIEERVVDlsdKDSNPFKLSKGTVWYLV 126
|
...
gi 134304842 1586 KAV 1588
Cdd:pfam10377 127 TAE 129
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
871-1375 |
5.70e-19 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 93.55 E-value: 5.70e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 871 KNEYEGKLDGLIKETEENENKIKKLKGELVCLEEVLQNKDNEFALVKHEKEAvicLQNEKDQKLLEMENIMHsqncEIKE 950
Cdd:TIGR04523 119 KNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEE---LENELNLLEKEKLNIQK----NIDK 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 951 LKQSR---EIVLEDLKKLhvenDEKLQLLRAELQSLEQ--SHLKELEDTLQVRhIQEFEKVMTDHRVSLEELKKENQQII 1025
Cdd:TIGR04523 192 IKNKLlklELLLSNLKKK----IQKNKSLESQISELKKqnNQLKDNIEKKQQE-INEKTTEISNTQTQLNQLKDEQNKIK 266
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1026 NQIQESHAEI------IQEKEKQLQELKLKVSDLSdtrcklevelalKEAETDEIKILLEESRAQQKetlkslleqETEN 1099
Cdd:TIGR04523 267 KQLSEKQKELeqnnkkIKELEKQLNQLKSEISDLN------------NQKEQDWNKELKSELKNQEK---------KLEE 325
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1100 LRTEISKLNQKIQDNNEnyqvglaelrTLMTIEKDqcISELISRHEEESNILKAELNKVTSLHNQ---AFEIEKNLKEQI 1176
Cdd:TIGR04523 326 IQNQISQNNKIISQLNE----------QISQLKKE--LTNSESENSEKQRELEEKQNEIEKLKKEnqsYKQEIKNLESQI 393
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1177 IELQSKLDsELSALERQKDEKITQQEEKYEAI---IQNLEKDRQKLVS------SQEQDREQLIQKLNCEKDEaIQTALK 1247
Cdd:TIGR04523 394 NDLESKIQ-NQEKLNQQKDEQIKKLQQEKELLekeIERLKETIIKNNSeikdltNQDSVKELIIKNLDNTRES-LETQLK 471
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1248 EFKLEREVVEKELLEKVKHLENQIAKSPAIDSTRGDSSSLVAELQEKLQEEKAKfLEQLEEQEKRKNEEMQNVRTSLIAE 1327
Cdd:TIGR04523 472 VLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEK-IEKLESEKKEKESKISDLEDELNKD 550
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 134304842 1328 QQTNFNTVLTREKMRKENIINDLSDKLKSTMQQQERDKDLIESLSEDR 1375
Cdd:TIGR04523 551 DFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEK 598
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
856-1367 |
2.07e-14 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 78.94 E-value: 2.07e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 856 EITLKEKHQKELLSLKNEYEGKLDGLIKETEENE--NKIKKLKGELVCLEEVLQNKDNEFALVKHEKEAVICLQNEKDQK 933
Cdd:TIGR00606 492 KNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEqlNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPN 571
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 934 LLEMENIMHSQNCEIKELKQSreivLEDLKKLHVENDEKLQLLRAELQSLEQSHLKELEDTLQVRHIQEFEKVMTDHRVS 1013
Cdd:TIGR00606 572 KKQLEDWLHSKSKEINQTRDR----LAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEE 647
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1014 LEELKKEN----------QQIINQIQESHA------EIIQEKEKQLQE----LKLKVSDLSDTRCKLEVELALKEAETDE 1073
Cdd:TIGR00606 648 IEKSSKQRamlagatavySQFITQLTDENQsccpvcQRVFQTEAELQEfisdLQSKLRLAPDKLKSTESELKKKEKRRDE 727
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1074 IKILLEesraqQKETLKSLLEQETENLRTEISKLNQKIQDNNENyqvglaelrtlmtIEKDQCISELISRHEEESNILKA 1153
Cdd:TIGR00606 728 MLGLAP-----GRQSIIDLKEKEIPELRNKLQKVNRDIQRLKND-------------IEEQETLLGTIMPEEESAKVCLT 789
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1154 ELNKVTSLHNQAFEIEKNLKEQIIELQSkldSELSALERQKDEKITQQEEKYEAIIQNLEKDRqKLVSSQEQDREQLIQK 1233
Cdd:TIGR00606 790 DVTIMERFQMELKDVERKIAQQAAKLQG---SDLDRTVQQVNQEKQEKQHELDTVVSKIELNR-KLIQDQQEQIQHLKSK 865
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1234 LNCEKDEAIQtaLKEFKLEREVVEKELLEKVKHLENQIAkspAIDSTRGDSSSLvAELQEKLQEEKAKFLEQLEEQEKRK 1313
Cdd:TIGR00606 866 TNELKSEKLQ--IGTNLQRRQQFEEQLVELSTEVQSLIR---EIKDAKEQDSPL-ETFLEKDQQEKEELISSKETSNKKA 939
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 134304842 1314 NEEMQNVRTSL---IAEQQTNFNTV---LTREKMRKENIINDLSDKLKSTMQQQER-DKDL 1367
Cdd:TIGR00606 940 QDKVNDIKEKVkniHGYMKDIENKIqdgKDDYLKQKETELNTVNAQLEECEKHQEKiNEDM 1000
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
855-1376 |
1.11e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 76.51 E-value: 1.11e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 855 LEITLKEKHQKELLSLKNEYEGKLDGLIKETEENENKIKKLKGELVCLEEVLQNKDNEFALVKHEKEAVICLQNEKDQKL 934
Cdd:COG1196 218 LKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAEL 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 935 LEMENimhsqncEIKELKQSREIVLEDLKKLHVENDEKLQLLRAELQSLEQSHLKELEDTLQVRHIQEFEKVMTDHRVSL 1014
Cdd:COG1196 298 ARLEQ-------DIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEA 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1015 EELKKENQQIINQIQESHAEIIQ---EKEKQLQELKLKVSDLSDTRCKLEVELALKEAETDEIKILLEESRAQQKETLKS 1091
Cdd:COG1196 371 EAELAEAEEELEELAEELLEALRaaaELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEE 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1092 LLEQETEN---------LRTEISKLNQKIQDNNENYQVGLAELRTLMTIEKD---------------------QCISELI 1141
Cdd:COG1196 451 EAELEEEEeallellaeLLEEAALLEAALAELLEELAEAAARLLLLLEAEADyegflegvkaalllaglrglaGAVAVLI 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1142 SRHEEESNILKAELNKVtsLHNQAFEIEKNLKEQIIELQSKLDSELSALERQKDEKITQQEEKYEAIIQNLEKDRQKLVS 1221
Cdd:COG1196 531 GVEAAYEAALEAALAAA--LQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDL 608
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1222 SQEQDREQLIQKLNCEKDEAIQTALKEFKLEREVVEKELLEKVKHLENQIAKSPAIDSTRGDSSSLVAELQEKLQEEKAK 1301
Cdd:COG1196 609 READARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERL 688
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 134304842 1302 FLEQLEEQEKRKNEEMQNVRTSLIAEQQTNFNTVLTREKMRKENIINDLSDKLKSTMQQQERDKDLIESLSEDRA 1376
Cdd:COG1196 689 AEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLE 763
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1035-1362 |
1.52e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 76.13 E-value: 1.52e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1035 IIQEKEKQLQELK------LKVSDLSDTRCKLEVELAL-------KEAETDEIKILLEESRAQQKETLKSLLEQETENLR 1101
Cdd:COG1196 194 ILGELERQLEPLErqaekaERYRELKEELKELEAELLLlklreleAELEELEAELEELEAELEELEAELAELEAELEELR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1102 TEISKLNQKIQDNNENYQVGLAElrtlmtiekdqciselISRHEEESNILKAELnkvtslhnqafeieKNLKEQIIELQS 1181
Cdd:COG1196 274 LELEELELELEEAQAEEYELLAE----------------LARLEQDIARLEERR--------------RELEERLEELEE 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1182 KLDSELSALERQKDEKITQQEEK--YEAIIQNLEKDRQKLVSSQEQDREQLIQKLncEKDEAIQTALKEFKLEREVVEKE 1259
Cdd:COG1196 324 ELAELEEELEELEEELEELEEELeeAEEELEEAEAELAEAEEALLEAEAELAEAE--EELEELAEELLEALRAAAELAAQ 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1260 LLEKVKHLENQIAKSPAIDSTRGDSSSLVAELQEKLQEEKAKFLEQLEEQEKRKNEEMQNVRTSLIAEQQTNFNTVLTRE 1339
Cdd:COG1196 402 LEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAE 481
|
330 340
....*....|....*....|...
gi 134304842 1340 KMRKENIINDLSDKLKSTMQQQE 1362
Cdd:COG1196 482 LLEELAEAAARLLLLLEAEADYE 504
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
859-1377 |
3.37e-13 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 75.15 E-value: 3.37e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 859 LKEKHQKELLSLKNEYEGKLDGLIKETEENENKIKKLKGELVCLEEVLQNKDNEFALVKHEKEAVIC-LQNE-------K 930
Cdd:pfam15921 261 LLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSqLRSElreakrmY 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 931 DQKLLEMENIMHSQNCEIKELKQSREIVLEDLKKLhvenDEKLQLLRAELQSLEQSHLKELEDTLQVRHIQEFEKVMTDH 1010
Cdd:pfam15921 341 EDKIEELEKQLVLANSELTEARTERDQFSQESGNL----DDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDH 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1011 -RVSLEELKKENQQIINQIQESHAEIIQEKEKQLQELKLKVSDL---SDTRCKLEVELALKEAETDEI---KILLEESRA 1083
Cdd:pfam15921 417 lRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLekvSSLTAQLESTKEMLRKVVEELtakKMTLESSER 496
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1084 QQKETLKSLLEQE--TENLRTEISKLNQKI-------------QDNNENYQVGLAELRTLMTiEKDQCISELISRHEEES 1148
Cdd:pfam15921 497 TVSDLTASLQEKEraIEATNAEITKLRSRVdlklqelqhlkneGDHLRNVQTECEALKLQMA-EKDKVIEILRQQIENMT 575
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1149 NILKAELNKVTSLHNQAFEIEKNLKEQIIELQskldsELSALERQKDEKITQQEEKyeaiIQNLEKDRQKLVSSQ----- 1223
Cdd:pfam15921 576 QLVGQHGRTAGAMQVEKAQLEKEINDRRLELQ-----EFKILKDKKDAKIRELEAR----VSDLELEKVKLVNAGserlr 646
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1224 -----EQDREQLIQKL-NCEKD--------EAIQTALKEFKLEREVVEKELLEKVKHLENQIAKS----PAIDSTRGDSS 1285
Cdd:pfam15921 647 avkdiKQERDQLLNEVkTSRNElnslsedyEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTrntlKSMEGSDGHAM 726
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1286 SLVAELQEKLQ---------EEKAKFLEQ-----------LEEQEKRKNEEMQNVRTSLiAEQQTNFNTVLTREKMRKEN 1345
Cdd:pfam15921 727 KVAMGMQKQITakrgqidalQSKIQFLEEamtnankekhfLKEEKNKLSQELSTVATEK-NKMAGELEVLRSQERRLKEK 805
|
570 580 590
....*....|....*....|....*....|..
gi 134304842 1346 IINDLSDKLKSTMQQQERdKDLIESLSEDRAR 1377
Cdd:pfam15921 806 VANMEVALDKASLQFAEC-QDIIQRQEQESVR 836
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
953-1272 |
6.65e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.94 E-value: 6.65e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 953 QSREIVLEDLKKLHVENDEKLQLLRAELQSLEQSH--LKELEDTLQVRhIQEFEKVMTDHRVSLEELKKENQQIINQIQE 1030
Cdd:TIGR02168 673 LERRREIEELEEKIEELEEKIAELEKALAELRKELeeLEEELEQLRKE-LEELSRQISALRKDLARLEAEVEQLEERIAQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1031 SHAEiIQEKEKQLQELKLKVSDLSDTRCKLEVELALKEAETDEIKILLEESRAQQKEtlkslLEQETENLRTEISKLNQK 1110
Cdd:TIGR02168 752 LSKE-LTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDE-----LRAELTLLNEEAANLRER 825
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1111 IQDNnenyqvglaELRTLMTIEKDQCISELISRHEEESNILKAELNKVTSL---HNQAFEIEKNLKEQIIELQSKLDSEL 1187
Cdd:TIGR02168 826 LESL---------ERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELieeLESELEALLNERASLEEALALLRSEL 896
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1188 SALERQKDEKitqqEEKYEAIIQNLEKDRQKLVSSQ------EQDREQLIQKLNcEKDEAIQTALKEFKLEREVVEKELL 1261
Cdd:TIGR02168 897 EELSEELREL----ESKRSELRRELEELREKLAQLElrleglEVRIDNLQERLS-EEYSLTLEEAEALENKIEDDEEEAR 971
|
330
....*....|.
gi 134304842 1262 EKVKHLENQIA 1272
Cdd:TIGR02168 972 RRLKRLENKIK 982
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
926-1315 |
6.68e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 73.95 E-value: 6.68e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 926 LQNEKD---QKLLEMENIMHSQNCEIKELKQS---REIVLEDLKKLHVENDEKLQLLRAELQSLEQ--SHLKELEDTLQV 997
Cdd:TIGR02169 686 LKRELSslqSELRRIENRLDELSQELSDASRKigeIEKEIEQLEQEEEKLKERLEELEEDLSSLEQeiENVKSELKELEA 765
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 998 RhIQEFEKVMTDHRVSLEELK-KENQQIINQIQEShaeiIQEKEKQLQELKLKVSDLSDTRCKLEVELALKEAETDEIKI 1076
Cdd:TIGR02169 766 R-IEELEEDLHKLEEALNDLEaRLSHSRIPEIQAE----LSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQE 840
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1077 LLEESRAQQKEtlkslLEQETENLRTEISKLNQKIqdnnENYQVGLAELRT-LMTIEKDqciselISRHEEEsniLKAEL 1155
Cdd:TIGR02169 841 QRIDLKEQIKS-----IEKEIENLNGKKEELEEEL----EELEAALRDLESrLGDLKKE------RDELEAQ---LRELE 902
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1156 NKVTSLHNQAFEIEKNLKEQIIELQSKLDsELSALERQKDEKITQQEEkyEAIIQNLEKDRQKLvssqeqdrEQLIQKLN 1235
Cdd:TIGR02169 903 RKIEELEAQIEKKRKRLSELKAKLEALEE-ELSEIEDPKGEDEEIPEE--ELSLEDVQAELQRV--------EEEIRALE 971
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1236 CEKDEAIQtalkefklEREVVEKELLEkvkhlenqiakspaidstrgdssslVAELQEKLQEEKAKFLEQLEEQEKRKNE 1315
Cdd:TIGR02169 972 PVNMLAIQ--------EYEEVLKRLDE-------------------------LKEKRAKLEEERKAILERIEEYEKKKRE 1018
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
843-1377 |
1.22e-12 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 73.17 E-value: 1.22e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 843 EIRNIIEK-------VKCSLEITLKEKHQKELLSLKNEYEGKLDGL---IKETEENENKIKKLKGELVCLEEVLQNKDNE 912
Cdd:PRK03918 136 EIDAILESdesrekvVRQILGLDDYENAYKNLGEVIKEIKRRIERLekfIKRTENIEELIKEKEKELEEVLREINEISSE 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 913 FALVKHEKEAViclqnekDQKLLEMENIMHsqncEIKELKQSREIVLEDLKKLhvenDEKLQLLRAELQSLEqSHLKELE 992
Cdd:PRK03918 216 LPELREELEKL-------EKEVKELEELKE----EIEELEKELESLEGSKRKL----EEKIRELEERIEELK-KEIEELE 279
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 993 DtlQVRHIQEFEKVMTDHRvSLEELKKENQQIINQIQ---ESHAEIIQEKEKQLQELKLKVSDLSDTRCKLE------VE 1063
Cdd:PRK03918 280 E--KVKELKELKEKAEEYI-KLSEFYEEYLDELREIEkrlSRLEEEINGIEERIKELEEKEERLEELKKKLKelekrlEE 356
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1064 LALKEAETDEIKILLEESRAQQK-----------------ETLKSLLEQETENLRTEISKLNQKIQDNNENyqvgLAELR 1126
Cdd:PRK03918 357 LEERHELYEEAKAKKEELERLKKrltgltpeklekeleelEKAKEEIEEEISKITARIGELKKEIKELKKA----IEELK 432
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1127 TlMTIEKDQCISELISRHEEE-SNILKAELNKVTSLHNQAFEIEKNLKEQIIELQSKL--DSELSALeRQKDEKITQQEE 1203
Cdd:PRK03918 433 K-AKGKCPVCGRELTEEHRKElLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLkkESELIKL-KELAEQLKELEE 510
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1204 KYEAIiqNLEKDRQKlvssqEQDREQLIQKLNCEKDEaIQTALKEFKLEREVVEK--ELLEKVKHLENQIAKSPAIDSTR 1281
Cdd:PRK03918 511 KLKKY--NLEELEKK-----AEEYEKLKEKLIKLKGE-IKSLKKELEKLEELKKKlaELEKKLDELEEELAELLKELEEL 582
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1282 GDSSslVAELQEKLQEEKAKFLEQLE----EQEKRKNEEMQNVRTSLIAEQQTNFNTVLTR-EKMRKEniINDLsdKLKS 1356
Cdd:PRK03918 583 GFES--VEELEERLKELEPFYNEYLElkdaEKELEREEKELKKLEEELDKAFEELAETEKRlEELRKE--LEEL--EKKY 656
|
570 580
....*....|....*....|.
gi 134304842 1357 TMQQQERDKDLIESLSEDRAR 1377
Cdd:PRK03918 657 SEEEYEELREEYLELSRELAG 677
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
949-1234 |
1.31e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.05 E-value: 1.31e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 949 KELKQSREIVLEDLKKLHVEN-DEKLQLLRAELQSLEQsHLKELEDTLQVR--HIQEFEKVMTDHRVSLEELKKENQQII 1025
Cdd:COG1196 216 RELKEELKELEAELLLLKLRElEAELEELEAELEELEA-ELEELEAELAELeaELEELRLELEELELELEEAQAEEYELL 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1026 NQIQESHAEIIQEKEkQLQELKLKVSDLSDTRCKLEVELALKEAETDEIKILLEESRAQQKEtLKSLLEQETENLRTEIS 1105
Cdd:COG1196 295 AELARLEQDIARLEE-RRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEE-AEAELAEAEEALLEAEA 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1106 KLNQKIQDNNENYQVGLAELRTLMTIEKDqcISELISRHEEESNILKAELNKVTSLHNQAFEIEKNLKEQIIELQSKLDS 1185
Cdd:COG1196 373 ELAEAEEELEELAEELLEALRAAAELAAQ--LEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEE 450
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 134304842 1186 ELSALERQKDEKITQQEEKYEAIIQNLEKDRQKLVSSQEQDREQLIQKL 1234
Cdd:COG1196 451 EAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEA 499
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
862-1374 |
3.44e-12 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 71.31 E-value: 3.44e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 862 KHQKELLSLKNEYEGKLDGLIKETEEN---ENKIKKLKGELVCLEEVLQNKDNEFALVKHEKEAVICLQNEKDQKLLEME 938
Cdd:pfam05557 24 EHKRARIELEKKASALKRQLDRESDRNqelQKRIRLLEKREAEAEEALREQAELNRLKKKYLEALNKKLNEKESQLADAR 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 939 NIMHSQNCEIKELKQSREIvledlkklhveNDEKLQLLRAELQSLEQSHlkeledTLQVRHIQEFEKVMTDHRVSLEELK 1018
Cdd:pfam05557 104 EVISCLKNELSELRRQIQR-----------AELELQSTNSELEELQERL------DLLKAKASEAEQLRQNLEKQQSSLA 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1019 KENQQII-----NQIQESHAEIIqekeKQLQELKLKVSDLSDTRCKLEVELAlKEAETDEIKILLEEsraqQKETLKSLL 1093
Cdd:pfam05557 167 EAEQRIKelefeIQSQEQDSEIV----KNSKSELARIPELEKELERLREHNK-HLNENIENKLLLKE----EVEDLKRKL 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1094 EQETE------NLRTEISKLNQKIQDNNENYQVGLAELRTLMTiekdqcISELISRHEEESNILKAElnkVTSLHNQAFE 1167
Cdd:pfam05557 238 EREEKyreeaaTLELEKEKLEQELQSWVKLAQDTGLNLRSPED------LSRRIEQLQQREIVLKEE---NSSLTSSARQ 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1168 IEKNLKEQIIEL---QSKLDSELSALERQKDEK---------ITQQEEKYEAIIQNLEKDRQKLVSSQEQDR-----EQL 1230
Cdd:pfam05557 309 LEKARRELEQELaqyLKKIEDLNKKLKRHKALVrrlqrrvllLTKERDGYRAILESYDKELTMSNYSPQLLErieeaEDM 388
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1231 IQKLNCeKDEAIQTALKefKLEREVVEKELLEKVKHLENQIAKSPAIDSTRGDSSSLVAELQEKLQEEKAkfleQLEEQE 1310
Cdd:pfam05557 389 TQKMQA-HNEEMEAQLS--VAEEELGGYKQQAQTLERELQALRQQESLADPSYSKEEVDSLRRKLETLEL----ERQRLR 461
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 134304842 1311 KRKNE-EMQNVRTSLiaeqQTNFNTVLTREKMRKENIINDLSDKLKSTMQQ----QERDKDLIESLSED 1374
Cdd:pfam05557 462 EQKNElEMELERRCL----QGDYDPKKTKVLHLSMNPAAEAYQQRKNQLEKlqaeIERLKRLLKKLEDD 526
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
888-1371 |
3.95e-12 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 71.20 E-value: 3.95e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 888 NENKIKKLKGELVCLEEVLQNKDNEFALVkhekeaviclqnekDQKLLEMENIMHSQNCEIKELKQSreivLEDLKKLHV 967
Cdd:TIGR04523 31 QDTEEKQLEKKLKTIKNELKNKEKELKNL--------------DKNLNKDEEKINNSNNKIKILEQQ----IKDLNDKLK 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 968 ENDEKLQLLRAELQSLEqshlKELEDTLQVRHIQEFEKvmtdhrVSLEELKKENQQIINQIQEShaeiIQEKEKQLQELK 1047
Cdd:TIGR04523 93 KNKDKINKLNSDLSKIN----SEIKNDKEQKNKLEVEL------NKLEKQKKENKKNIDKFLTE----IKKKEKELEKLN 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1048 LKVSDLSDTRCKLEVELALKEAETDEIKILLEESRAQ--QKETLKSLLE---QETENLRTEISKLNQK---IQDNNENYQ 1119
Cdd:TIGR04523 159 NKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKllKLELLLSNLKkkiQKNKSLESQISELKKQnnqLKDNIEKKQ 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1120 VGLAELRTLMTIEKDQcISELISRHEEESNILKAELNKVTSLHNQAFEIEKNLKEqiielqskLDSELSALERQKDEKIT 1199
Cdd:TIGR04523 239 QEINEKTTEISNTQTQ-LNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQ--------LKSEISDLNNQKEQDWN 309
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1200 QqeeKYEAIIQNLEKDRQKLvSSQEQDREQLIQKLNcEKDEAIQTALKEFKLEREVVEKELLEKVKHLENQI----AKSP 1275
Cdd:TIGR04523 310 K---ELKSELKNQEKKLEEI-QNQISQNNKIISQLN-EQISQLKKELTNSESENSEKQRELEEKQNEIEKLKkenqSYKQ 384
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1276 AIDSTRGDSSSLVAEL--QEKLQEEKAKFLEQLEEQEKRKNEEMQNVRTSLIAEQQTNFNtvLTREKMRKENIINDLSDK 1353
Cdd:TIGR04523 385 EIKNLESQINDLESKIqnQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKD--LTNQDSVKELIIKNLDNT 462
|
490
....*....|....*...
gi 134304842 1354 LKSTMQQQERDKDLIESL 1371
Cdd:TIGR04523 463 RESLETQLKVLSRSINKI 480
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
830-1296 |
6.55e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 70.87 E-value: 6.55e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 830 QCDFSNSLKCTAVEIRNIIEKvkcsleitlkekhqkellslkneyegkldglIKETEENENKIKKLKGElvcLEEVLQNK 909
Cdd:TIGR02169 141 QGDVTDFISMSPVERRKIIDE-------------------------------IAGVAEFDRKKEKALEE---LEEVEENI 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 910 DnefalvkhEKEAVIclqnekdqkllemenimhsqnceikelkqsrEIVLEDLKKLHVENDEKL--QLLRAELQSLEQS- 986
Cdd:TIGR02169 187 E--------RLDLII-------------------------------DEKRQQLERLRREREKAEryQALLKEKREYEGYe 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 987 HLKELEDTlqVRHIQEFEKvmtdhrvSLEELKKENQQIINQIQESHAEiIQEKEKQLQELKLKVSDLSDTRC-------- 1058
Cdd:TIGR02169 228 LLKEKEAL--ERQKEAIER-------QLASLEEELEKLTEEISELEKR-LEEIEQLLEELNKKIKDLGEEEQlrvkekig 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1059 KLEVELALKEAETDEIKILLEESRAQQKEtlkslLEQETENLRTEISKLNQKIQDNNenyqvglaelrtlmtIEKDQCIS 1138
Cdd:TIGR02169 298 ELEAEIASLERSIAEKERELEDAEERLAK-----LEAEIDKLLAEIEELEREIEEER---------------KRRDKLTE 357
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1139 ELISRhEEESNILKAELNKVTSLHNQAFEIEKNLKEQIIELQSKLDS------ELSALERQKDEKITQQEEKYEAIIQNL 1212
Cdd:TIGR02169 358 EYAEL-KEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINElkreldRLQEELQRLSEELADLNAAIAGIEAKI 436
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1213 E------KDRQKLVSSQEQDREQLIQKLNCEKDEaiqtaLKEFKLEREVVEKELLEKVKHLENQIAKSPAIDSTRGDSSS 1286
Cdd:TIGR02169 437 NeleeekEDKALEIKKQEWKLEQLAADLSKYEQE-----LYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRA 511
|
490
....*....|
gi 134304842 1287 LVAELQEKLQ 1296
Cdd:TIGR02169 512 VEEVLKASIQ 521
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
883-1219 |
1.71e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 69.32 E-value: 1.71e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 883 KETEENENKIKKLKGELVCLEEVLQNKDNEFALVKHEKEaviclqnEKDQKLLEMENIMHSQNCEIKELKQSREIVLEDL 962
Cdd:TIGR02168 677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELE-------QLRKELEELSRQISALRKDLARLEAEVEQLEERI 749
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 963 KKLHVENDEKLQLLRAELQSLEQSHLKELEdtlqvrhiqefekvmtdhrvsLEELKKENQQIINQIQESHA---EIIQEK 1039
Cdd:TIGR02168 750 AQLSKELTELEAEIEELEERLEEAEEELAE---------------------AEAEIEELEAQIEQLKEELKalrEALDEL 808
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1040 EKQLQELKLKVSDLSDTRCKLEVELALKEAETDEikilLEESRAQQKETLKSlLEQETENLRTEISKLNQKIQDNNENY- 1118
Cdd:TIGR02168 809 RAELTLLNEEAANLRERLESLERRIAATERRLED----LEEQIEELSEDIES-LAAEIEELEELIEELESELEALLNERa 883
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1119 --QVGLAELRTLMTIEKDQciselISRHEEESNILKAELNKVTSLHNQAFEIEKNLKEQIIELQSKLDSELSALER---Q 1193
Cdd:TIGR02168 884 slEEALALLRSELEELSEE-----LRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEeaeA 958
|
330 340
....*....|....*....|....*.
gi 134304842 1194 KDEKITQQEEKYEAIIQNLEKDRQKL 1219
Cdd:TIGR02168 959 LENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1019-1316 |
2.02e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 69.32 E-value: 2.02e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1019 KENQQIINQIQEshaeiIQEKEKQLQELKLKVSDLSDTRCKLEVELALKEAETDEIKILLEESRAQQKETLKSL--LEQE 1096
Cdd:TIGR02168 667 KTNSSILERRRE-----IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLarLEAE 741
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1097 TENLRTEISKLNQKIQDNNENYQVGLAELrtlmtiekdQCISELISRHEEESNILKAELNKVTSLHNQAFEIEKNLKEQI 1176
Cdd:TIGR02168 742 VEQLEERIAQLSKELTELEAEIEELEERL---------EEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAEL 812
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1177 IELQSKLD---SELSALERQKDEKITQQEEKYEAIIQNLEkDRQKLVSSQEQDREQLiqklncekdEAIQTALKEFKLER 1253
Cdd:TIGR02168 813 TLLNEEAAnlrERLESLERRIAATERRLEDLEEQIEELSE-DIESLAAEIEELEELI---------EELESELEALLNER 882
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 134304842 1254 EVVEKELLEKVKHLENQIAKSPAIDSTRGDSSSLVAELQEKL---QEEKAKFLEQLEEQEKRKNEE 1316
Cdd:TIGR02168 883 ASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLaqlELRLEGLEVRIDNLQERLSEE 948
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
843-1321 |
2.14e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 68.94 E-value: 2.14e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 843 EIRNIIEKVKcsLEITLKEKHQKELLSLKNEYEGKLDGLIKETEENENKIKKLKG------ELVCLEEVLQNKDNEFALV 916
Cdd:PRK03918 235 ELKEEIEELE--KELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKElkekaeEYIKLSEFYEEYLDELREI 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 917 KHEKEAVICLQNEKDQKLLEMENiMHSQNCEIKELKQSREIVLEDLKKLHVENDEKLQL------LRAELQSLEQSHLKE 990
Cdd:PRK03918 313 EKRLSRLEEEINGIEERIKELEE-KEERLEELKKKLKELEKRLEELEERHELYEEAKAKkeelerLKKRLTGLTPEKLEK 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 991 LEDTLQVR--HIQEFEKVMTDHRVSLEELKKENQQIINQIQESH-------AEIIQEKEKQL-QELKLKVSDLSDTRCKL 1060
Cdd:PRK03918 392 ELEELEKAkeEIEEEISKITARIGELKKEIKELKKAIEELKKAKgkcpvcgRELTEEHRKELlEEYTAELKRIEKELKEI 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1061 EVELALKEAETDEIKILLEESRAQQKetLKSLLEQeTENLRTEISKLN-QKIQDNNENYQVGLAELRTL----MTIEKDq 1135
Cdd:PRK03918 472 EEKERKLRKELRELEKVLKKESELIK--LKELAEQ-LKELEEKLKKYNlEELEKKAEEYEKLKEKLIKLkgeiKSLKKE- 547
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1136 ciselISRHEEESNILKAELNKVTSLHNQAFEIEKNLKEQIIELQSKLDSELSALERQKDEKITQQEEKYEaiIQNLEKD 1215
Cdd:PRK03918 548 -----LEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKE--LEREEKE 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1216 RQKLVSSQEQDREQLIQKLNC--EKDEAIQTALKEFKLER-EVVEKELLEKVKHLENQIAKSPAIDSTRGDssslVAELQ 1292
Cdd:PRK03918 621 LKKLEEELDKAFEELAETEKRleELRKELEELEKKYSEEEyEELREEYLELSRELAGLRAELEELEKRREE----IKKTL 696
|
490 500 510
....*....|....*....|....*....|.
gi 134304842 1293 EKLQEEKAKFLEQLEEQEK--RKNEEMQNVR 1321
Cdd:PRK03918 697 EKLKEELEEREKAKKELEKleKALERVEELR 727
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
855-1365 |
6.55e-11 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 67.37 E-value: 6.55e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 855 LEITLKEKHQKELLSLKNEYEGKL---DGLIKETEENENKIKKLKGELVCLEEVLQNKDNEFALVKHEKEAvicLQNEKD 931
Cdd:PRK02224 192 LKAQIEEKEEKDLHERLNGLESELaelDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIED---LRETIA 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 932 QKLLEMENIMHsqncEIKELKQSREIVLEDLKKLhvendeklqLLRAELQSLEQSHLKELEDTLQVRhIQEFEKVMTDHR 1011
Cdd:PRK02224 269 ETEREREELAE----EVRDLRERLEELEEERDDL---------LAEAGLDDADAEAVEARREELEDR-DEELRDRLEECR 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1012 VSLEELKKEnqqiinqiQESHAEIIQEKEKQLQELKLKVSDLSDTRCKLEVELALKEAETDEIKILLEESRAQ------- 1084
Cdd:PRK02224 335 VAAQAHNEE--------AESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERfgdapvd 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1085 --QKETLKSLLEQETENLRTEISKLNQKIQDNNENyqvgLAELRTLM-------------------TIEKDQcisELISR 1143
Cdd:PRK02224 407 lgNAEDFLEELREERDELREREAELEATLRTARER----VEEAEALLeagkcpecgqpvegsphveTIEEDR---ERVEE 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1144 HEEESNILKAELNKVTSLHNQAfeieKNLKEQIIELQsKLDSELSALERQKDEKITQQEEKYEAiIQNLEKDRQKLVSSQ 1223
Cdd:PRK02224 480 LEAELEDLEEEVEEVEERLERA----EDLVEAEDRIE-RLEERREDLEELIAERRETIEEKRER-AEELRERAAELEAEA 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1224 EQDREQlIQKLNCEKDEAIQTaLKEFKLEREVVEKELlekvkhleNQIAKSPAIDSTRGDSSSLVAELQEKLQEekakfL 1303
Cdd:PRK02224 554 EEKREA-AAEAEEEAEEAREE-VAELNSKLAELKERI--------ESLERIRTLLAAIADAEDEIERLREKREA-----L 618
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 134304842 1304 EQLEEQEKRKNEEMQNVRTSLIAEQQTNFNTVLTREKMRKENIINDLSDKLKSTmqQQERDK 1365
Cdd:PRK02224 619 AELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDEL--REERDD 678
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
835-1220 |
1.13e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 66.63 E-value: 1.13e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 835 NSLKCTAVEIRNIIEKVK--------CSLEITlkEKHQKELLslkNEYEGKLDGLIKETEENENKIKKLKGELVCLEEVL 906
Cdd:PRK03918 415 GELKKEIKELKKAIEELKkakgkcpvCGRELT--EEHRKELL---EEYTAELKRIEKELKEIEEKERKLRKELRELEKVL 489
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 907 qnkdnefalvkhekeaviclqnEKDQKLLEMENIMHsqncEIKELKQS-REIVLEDLKKlhveNDEKLQLLRAELQSLEq 985
Cdd:PRK03918 490 ----------------------KKESELIKLKELAE----QLKELEEKlKKYNLEELEK----KAEEYEKLKEKLIKLK- 538
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 986 SHLKELEDTLQvrHIQEFEKVMTDHRVSLEELKKENQQIINQIQESHAEIIQEKEKQLQELK--------LKVS-----D 1052
Cdd:PRK03918 539 GEIKSLKKELE--KLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEpfyneyleLKDAekeleR 616
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1053 LSDTRCKLEVELALKEAETDEIKILLEESRAQQKETLKSLLEQETENLRTEISKLNQKIQDNNENYQvGLAELR--TLMT 1130
Cdd:PRK03918 617 EEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELE-ELEKRReeIKKT 695
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1131 IEKDQCISELISRHEEESNILKAELNKVTSLHNQAFEIEKNLKEQIIELQSKLDSELSalerqkdEKITqqEEKYEAIIQ 1210
Cdd:PRK03918 696 LEKLKEELEEREKAKKELEKLEKALERVEELREKVKKYKALLKERALSKVGEIASEIF-------EELT--EGKYSGVRV 766
|
410
....*....|
gi 134304842 1211 NLEKDRQKLV 1220
Cdd:PRK03918 767 KAEENKVKLF 776
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1014-1373 |
1.39e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 66.62 E-value: 1.39e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1014 LEELKKENQQIinQIQESHAEIIQEKEKQLQELKLKVSDLSDTRckLEVELALKEAETDEIKILLEESRAQQKEtlkslL 1093
Cdd:TIGR02168 195 LNELERQLKSL--ERQAEKAERYKELKAELRELELALLVLRLEE--LREELEELQEELKEAEEELEELTAELQE-----L 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1094 EQETENLRTEISKLNQKIQDNNENYQVglaelrtlmtiekdqcISELISRHEEESNILKAELNkvtSLHNQAFEIEknlk 1173
Cdd:TIGR02168 266 EEKLEELRLEVSELEEEIEELQKELYA----------------LANEISRLEQQKQILRERLA---NLERQLEELE---- 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1174 EQIIELQSKLDsELSALERQKDEKITQQEEKYEAI---IQNLEKDRQKLVSSQEQDREQL-------IQKLNCEKDEAIQ 1243
Cdd:TIGR02168 323 AQLEELESKLD-ELAEELAELEEKLEELKEELESLeaeLEELEAELEELESRLEELEEQLetlrskvAQLELQIASLNNE 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1244 TALKEFKLEREVVEKELLEKVKHLENQIAKSPAIDSTRGDSSSLVAELqEKLQEEKAKFLEQLEEQEKRKNEEMQNVRTS 1323
Cdd:TIGR02168 402 IERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEEL-EELQEELERLEEALEELREELEEAEQALDAA 480
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 134304842 1324 LIAEQQTNFNTVLTREKMRKeniINDLSDKLKSTMQQQERDKDLIESLSE 1373
Cdd:TIGR02168 481 ERELAQLQARLDSLERLQEN---LEGFSEGVKALLKNQSGLSGILGVLSE 527
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
864-1241 |
3.92e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 65.09 E-value: 3.92e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 864 QKELLSLKNEyegkLDGLIKETEENENKIKKLKGELVCLEEVLQNKDNEFALVKHEKEAVICLQNEKDQKLLEMENimhs 943
Cdd:TIGR02169 680 RERLEGLKRE----LSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQ---- 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 944 qncEIKELKQSreivLEDLKKLHVENDEKLQLLRAELQSLEQSHLKELEDTLQvRHIQEFEKVMTDHRVSLEELKKEnqq 1023
Cdd:TIGR02169 752 ---EIENVKSE----LKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQ-AELSKLEEEVSRIEARLREIEQK--- 820
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1024 iinqIQESHAEIIQEkEKQLQELKLKVSDLSDTRCKLEVELALKEAETDEIKILLEESRAQQKETLKSL--LEQETENLR 1101
Cdd:TIGR02169 821 ----LNRLTLEKEYL-EKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLgdLKKERDELE 895
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1102 TEISKLNQKIQDNNENYQvgLAELRTLMTIEKDQCISELISRHEEESNILKAELNKVTSLhnqafeieknlkEQIIELQS 1181
Cdd:TIGR02169 896 AQLRELERKIEELEAQIE--KKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSL------------EDVQAELQ 961
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1182 KLDSELSALERQKDEKItQQEEKYEAIIQNLEKDRQKLVSSQEQDREqLIQKLNCEKDEA 1241
Cdd:TIGR02169 962 RVEEEIRALEPVNMLAI-QEYEEVLKRLDELKEKRAKLEEERKAILE-RIEEYEKKKREV 1019
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1016-1286 |
7.87e-10 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 62.86 E-value: 7.87e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1016 ELKKENQQIINQIQEShaeiIQEKEKQLQELKLKVSDLSDTRCKLEVELALKEAEtdeikilLEESRAQQKEtlkslLEQ 1095
Cdd:COG4942 20 DAAAEAEAELEQLQQE----IAELEKELAALKKEEKALLKQLAALERRIAALARR-------IRALEQELAA-----LEA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1096 ETENLRTEISKLNQKIQDNNENYQvglAELRTLMTIEKDQCISELISRHEEESNILKAELNKvtslhnqafEIEKNLKEQ 1175
Cdd:COG4942 84 ELAELEKEIAELRAELEAQKEELA---ELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLK---------YLAPARREQ 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1176 IIELQSKLDselsALERQKDEKITQQEEKyEAIIQNLEKDRQKLvSSQEQDREQLIQKLNCEKdEAIQTALKEFKLErev 1255
Cdd:COG4942 152 AEELRADLA----ELAALRAELEAERAEL-EALLAELEEERAAL-EALKAERQKLLARLEKEL-AELAAELAELQQE--- 221
|
250 260 270
....*....|....*....|....*....|.
gi 134304842 1256 vEKELLEKVKHLENQIAKSPAIDSTRGDSSS 1286
Cdd:COG4942 222 -AEELEALIARLEAEAAAAAERTPAAGFAAL 251
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
846-1353 |
8.00e-10 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 64.30 E-value: 8.00e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 846 NIIEKVKCSLEITLKEKHQkellSLKNEYEGKLDGLIKETEENENKIKKLKGELVCLEEVLQNKD-----NEFALVKHEK 920
Cdd:TIGR01612 533 NIKAKLYKEIEAGLKESYE----LAKNWKKLIHEIKKELEEENEDSIHLEKEIKDLFDKYLEIDDeiiyiNKLKLELKEK 608
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 921 EAVICLQNEKDQKLLEMENIMHSQNCEIKEL-KQSREIVLEdlkklHVENDEKL-QLLRAELQSLEQSHLKELEDTLQvR 998
Cdd:TIGR01612 609 IKNISDKNEYIKKAIDLKKIIENNNAYIDELaKISPYQVPE-----HLKNKDKIySTIKSELSKIYEDDIDALYNELS-S 682
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 999 HIQEFEKVMTDHRVSLEELKKENQQIINQIQESHAEIIqekEKQLQELKLKVSDLSDTrcKLEVELALKEAETDEIKILL 1078
Cdd:TIGR01612 683 IVKENAIDNTEDKAKLDDLKSKIDKEYDKIQNMETATV---ELHLSNIENKKNELLDI--IVEIKKHIHGEINKDLNKIL 757
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1079 EESRAQQKETLKSLLEQETEN-----LRTEISKL-----------NQKIQDNNENYQVGLAELRTLmTIEKDQcISELIS 1142
Cdd:TIGR01612 758 EDFKNKEKELSNKINDYAKEKdelnkYKSKISEIknhyndqinidNIKDEDAKQNYDKSKEYIKTI-SIKEDE-IFKIIN 835
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1143 RHEEESNILKAELNKVTSLHNQAFEIEKNLKEQIIELQSKLDSELSalerqkDEKITQQEEKYeaiiqnleKDRQKLVSS 1222
Cdd:TIGR01612 836 EMKFMKDDFLNKVDKFINFENNCKEKIDSEHEQFAELTNKIKAEIS------DDKLNDYEKKF--------NDSKSLINE 901
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1223 QEQDREQLIQKLNCEKD--------EAIQTALKEFKLEREVVEKELLEKVKHLENqiakSPAIDSTRGDssSLVAELQEK 1294
Cdd:TIGR01612 902 INKSIEEEYQNINTLKKvdeyikicENTKESIEKFHNKQNILKEILNKNIDTIKE----SNLIEKSYKD--KFDNTLIDK 975
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1295 LQEEKAKFLE-QLEEQEKRKNEEMQNVrTSLIAEQQTNFNTVLTREKMRKENIINDLSDK 1353
Cdd:TIGR01612 976 INELDKAFKDaSLNDYEAKNNELIKYF-NDLKANLGKNKENMLYHQFDEKEKATNDIEQK 1034
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
798-1476 |
1.53e-09 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 63.14 E-value: 1.53e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 798 LERCRVVAQDSHFSIQTIKEDLCHFRTFVQKeqcdfsnslkctAVEIRNiiekvkcslEITLKEKHQKELLSLKNEYEGK 877
Cdd:TIGR00606 188 LETLRQVRQTQGQKVQEHQMELKYLKQYKEK------------ACEIRD---------QITSKEAQLESSREIVKSYENE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 878 LDGL---IKETEENENKIKKLKGELVCL------------------EEVLQNKDNEFALVKHEKEAVIclqNEKDQKLLE 936
Cdd:TIGR00606 247 LDPLknrLKEIEHNLSKIMKLDNEIKALksrkkqmekdnselelkmEKVFQGTDEQLNDLYHNHQRTV---REKERELVD 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 937 MENIMHSQNCEIKELKQSREIVLEDLKKLHVEND-----------EKLQL-LRAELQSLEQSHLKELE----DTLQVRHI 1000
Cdd:TIGR00606 324 CQRELEKLNKERRLLNQEKTELLVEQGRLQLQADrhqehirardsLIQSLaTRLELDGFERGPFSERQiknfHTLVIERQ 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1001 QEFEKVMTDHRVSLEELKKENQQIINQIQE---SHAEIIQEK----EKQLQELKLKVSDLSDTRCK----LEVELALKEA 1069
Cdd:TIGR00606 404 EDEAKTAAQLCADLQSKERLKQEQADEIRDekkGLGRTIELKkeilEKKQEELKFVIKELQQLEGSsdriLELDQELRKA 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1070 ETDEIKILLEESRAQQKETLKSLLEQETENLRTEISKLNQKIQDNNENYQVGLAELRTLMTIEKDQCISELISRHEEESN 1149
Cdd:TIGR00606 484 ERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELT 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1150 ILKAELNKVTSLhNQAFEIEKNLKEQIIELQSKLDSELSALE------RQKDEKITQQEEKYEAII------QNLEKDRQ 1217
Cdd:TIGR00606 564 SLLGYFPNKKQL-EDWLHSKSKEINQTRDRLAKLNKELASLEqnknhiNNELESKEEQLSSYEDKLfdvcgsQDEESDLE 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1218 KLVSSQEQDREQL-------------IQKLNCEKDEAIQTALKEFKlerevVEKELLEKVKHLENQIAKSP-AIDST--- 1280
Cdd:TIGR00606 643 RLKEEIEKSSKQRamlagatavysqfITQLTDENQSCCPVCQRVFQ-----TEAELQEFISDLQSKLRLAPdKLKSTese 717
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1281 ------RGDSSSLVAELQEKLQEEKAKFLEQLEEQEKRKNEEMQNVRTSlIAEQQTNFNTVLTREKMRKE-----NIIND 1349
Cdd:TIGR00606 718 lkkkekRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKND-IEEQETLLGTIMPEEESAKVcltdvTIMER 796
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1350 LSDKLKSTMQQQER------DKDLIESLSEDRARLLEEKKKLEEEVSKLRSSSFVPSPYVATAPELYGACApELPGESDR 1423
Cdd:TIGR00606 797 FQMELKDVERKIAQqaaklqGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTN-ELKSEKLQ 875
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|...
gi 134304842 1424 SAVETADEGRVDSAMETSMMSVQENIHMLSEEKQRIMLLERTLQLKEEENKRL 1476
Cdd:TIGR00606 876 IGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEEL 928
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
854-1242 |
1.68e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 62.73 E-value: 1.68e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 854 SLEITLKEKhQKELLSLKNEYEGKLD---GLIKETEENENKIKKLKGELVCLEEVLQNKDNEFALVKHEKEAVICLQNEK 930
Cdd:TIGR04523 360 EKQRELEEK-QNEIEKLKKENQSYKQeikNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKN 438
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 931 DQKLLEMENIMHSQNCEIKELKQSREIVLEDLKKLHVEndeklqlLRAELQSLEQSHlKELEDtlQVRHIQEFEKVMTDH 1010
Cdd:TIGR04523 439 NSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRS-------INKIKQNLEQKQ-KELKS--KEKELKKLNEEKKEL 508
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1011 RVSLEELKKENQQIINQIQESHAEiIQEKEKQLQELKLKVSDLSD--TRCKLEVELALKEAETDEIKILLEESRAQQKET 1088
Cdd:TIGR04523 509 EEKVKDLTKKISSLKEKIEKLESE-KKEKESKISDLEDELNKDDFelKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEK 587
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1089 LKSL--LEQETENLRTEISKLNQKIQDNNENYQVGLAELRTLMTIEKDqcISELISRHEEESNILKAELNKVTSLHNQAF 1166
Cdd:TIGR04523 588 QELIdqKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKN--IKSKKNKLKQEVKQIKETIKEIRNKWPEII 665
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1167 EIEKNLKE---QIIELQSKLDSELSA------LERQKDEKITQQEEKYEAIIQNLEKdrqklVSSQEQDREQLIQKLNCE 1237
Cdd:TIGR04523 666 KKIKESKTkidDIIELMKDWLKELSLhykkyiTRMIRIKDLPKLEEKYKEIEKELKK-----LDEFSKELENIIKNFNKK 740
|
....*
gi 134304842 1238 KDEAI 1242
Cdd:TIGR04523 741 FDDAF 745
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
877-1219 |
2.15e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.38 E-value: 2.15e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 877 KLDGLIKETEENenkIKKLKGELVCLEEVLQNKDNEFALvkhEKEAVICLQNEKDQKLLEMENIMHSQNCEIKEL---KQ 953
Cdd:TIGR02168 190 RLEDILNELERQ---LKSLERQAEKAERYKELKAELREL---ELALLVLRLEELREELEELQEELKEAEEELEELtaeLQ 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 954 SREIVLEDLKKLHVENDEKLQLLRAELQSLeQSHLKELEDTLQVrhiqefekvmtdHRVSLEELKKENQQIinqiqeshA 1033
Cdd:TIGR02168 264 ELEEKLEELRLEVSELEEEIEELQKELYAL-ANEISRLEQQKQI------------LRERLANLERQLEEL--------E 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1034 EIIQEKEKQLQELKLKVSDLsdtrcklEVELALKEAETDEIKILLEESRAQQK--ETLKSLLEQETENLRTEISKLNQKI 1111
Cdd:TIGR02168 323 AQLEELESKLDELAEELAEL-------EEKLEELKEELESLEAELEELEAELEelESRLEELEEQLETLRSKVAQLELQI 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1112 QDNNenyqvglAELRTLmtiekDQCISELISRHEEESNILKAELNKVTSLHNQAFEIEKNLKEQIIElqsKLDSELSALE 1191
Cdd:TIGR02168 396 ASLN-------NEIERL-----EARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELE---ELQEELERLE 460
|
330 340
....*....|....*....|....*...
gi 134304842 1192 RQKdEKITQQEEKYEAIIQNLEKDRQKL 1219
Cdd:TIGR02168 461 EAL-EELREELEEAEQALDAAERELAQL 487
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1036-1245 |
2.90e-09 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 61.00 E-value: 2.90e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1036 IQEKEKQLQELKLKVSDLSDTRCKLEVELALKEAETDEIKILLEESRAQQKEtlkslLEQETENLRTEISKLNQKIQDNN 1115
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDK-----LQAEIAEAEAEIEERREELGERA 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1116 ENYQVGLAELRTLMTIEKDQCISELISRheeesniLKAeLNKVTSLHNQAFEIEKNLKEQIIELQSKLDSELSALERQKD 1195
Cdd:COG3883 93 RALYRSGGSVSYLDVLLGSESFSDFLDR-------LSA-LSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKA 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 134304842 1196 EKITQQEEkyeaiIQNLEKDRQKLV---SSQEQDREQLIQKLNCEKDEAIQTA 1245
Cdd:COG3883 165 ELEAAKAE-----LEAQQAEQEALLaqlSAEEAAAEAQLAELEAELAAAEAAA 212
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
856-1371 |
3.54e-09 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 61.66 E-value: 3.54e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 856 EITLKEKHQKELLSLKNEYEGKLDGLIKETEENENKIKKLKGELVCLEEVL-QNKDNEFALVKHEKEAVICLQNE-KDQK 933
Cdd:pfam05483 234 EINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLkELIEKKDHLTKELEDIKMSLQRSmSTQK 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 934 LLEMENIMHSQNceIKELKQSREIVLEDLKKLHVENDEKL-----------QLLRAELQSLE--QSHLKELEDTLQVR-- 998
Cdd:pfam05483 314 ALEEDLQIATKT--ICQLTEEKEAQMEELNKAKAAHSFVVtefeattcsleELLRTEQQRLEknEDQLKIITMELQKKss 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 999 HIQEFEKVMTDHRVSLEELKK---ENQQIINQIQ--ESHAEIIQEKEKQLQE-LKLKVSDLSDtrckLEVEL-ALKEAET 1071
Cdd:pfam05483 392 ELEEMTKFKNNKEVELEELKKilaEDEKLLDEKKqfEKIAEELKGKEQELIFlLQAREKEIHD----LEIQLtAIKTSEE 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1072 DEIKILLEESRAQQKETLKSL-LEQETENLRTEISKLNQKIQDnnenyqvglaelrtlMTIEKDQCISELISRHEEESNI 1150
Cdd:pfam05483 468 HYLKEVEDLKTELEKEKLKNIeLTAHCDKLLLENKELTQEASD---------------MTLELKKHQEDIINCKKQEERM 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1151 LKAELN---KVTSLHNQAFEIEKNLKEQIIELQSKLD--SELSALERQKDEKITQQEEKYEAIIQNLEK---DRQKLVSS 1222
Cdd:pfam05483 533 LKQIENleeKEMNLRDELESVREEFIQKGDEVKCKLDksEENARSIEYEVLKKEKQMKILENKCNNLKKqieNKNKNIEE 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1223 QEQDREQLIQKLNCEKDEAIQTALKEFKLEREVV-------------EKELLEKVKHLENQIAKSPAIDSTRGDSSSLVA 1289
Cdd:pfam05483 613 LHQENKALKKKGSAENKQLNAYEIKVNKLELELAsakqkfeeiidnyQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQK 692
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1290 ELQEKLQEEKAKFLEQLEEQEKRKNEemqnvrtsLIAEQQTNFNTVLTRE------KMRKENIINDLSDKLKSTMQQQER 1363
Cdd:pfam05483 693 EIDKRCQHKIAEMVALMEKHKHQYDK--------IIEERDSELGLYKNKEqeqssaKAALEIELSNIKAELLSLKKQLEI 764
|
....*...
gi 134304842 1364 DKDLIESL 1371
Cdd:pfam05483 765 EKEEKEKL 772
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
903-1377 |
4.00e-09 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 61.73 E-value: 4.00e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 903 EEVLQNKDNEFALVKHEKEAVICLQNE---KDQKLLEMENIMHSQNCEIKEL--------------KQSREIVLEDLKKL 965
Cdd:pfam01576 4 EEEMQAKEEELQKVKERQQKAESELKElekKHQQLCEEKNALQEQLQAETELcaeaeemrarlaarKQELEEILHELESR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 966 HVENDEKLQLLRAELQSLEQsHLKELEDTLQ----VRHIQEFEKVMTDHRV-SLEE-----------LKKENQQIINQIQ 1029
Cdd:pfam01576 84 LEEEEERSQQLQNEKKKMQQ-HIQDLEEQLDeeeaARQKLQLEKVTTEAKIkKLEEdillledqnskLSKERKLLEERIS 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1030 E--SHAEIIQEKEKQLQELKLK----VSDLSD-------TRCKLEVELALKEAETDEIKILLEESRAQQKEtLKSLLEQE 1096
Cdd:pfam01576 163 EftSNLAEEEEKAKSLSKLKNKheamISDLEErlkkeekGRQELEKAKRKLEGESTDLQEQIAELQAQIAE-LRAQLAKK 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1097 TENLRTEISKLNQKIQDNNE------NYQVGLAELRTLMTIEKDQ-CISELISRH-EEESNILKAELNKVTSLHNQAFEI 1168
Cdd:pfam01576 242 EEELQAALARLEEETAQKNNalkkirELEAQISELQEDLESERAArNKAEKQRRDlGEELEALKTELEDTLDTTAAQQEL 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1169 EKNLKEQIIELQSKLDSELSALE------RQKD----EKITQQEEKYEAIIQNLEKDRQ-------------KLVSSQEQ 1225
Cdd:pfam01576 322 RSKREQEVTELKKALEEETRSHEaqlqemRQKHtqalEELTEQLEQAKRNKANLEKAKQalesenaelqaelRTLQQAKQ 401
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1226 DREQLIQKLNCEKDEaIQTALKEFKLEREvvekELLEKVKHLENQIAK-SPAIDSTRGDSSSL---VAELQEKLQEEKak 1301
Cdd:pfam01576 402 DSEHKRKKLEGQLQE-LQARLSESERQRA----ELAEKLSKLQSELESvSSLLNEAEGKNIKLskdVSSLESQLQDTQ-- 474
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 134304842 1302 flEQLEEQEKRKNEEMQNVRTslIAEQQTNFNTVLTREKMRKENI---INDLSDKLKSTMQQQERDKDLIESLSEDRAR 1377
Cdd:pfam01576 475 --ELLQEETRQKLNLSTRLRQ--LEDERNSLQEQLEEEEEAKRNVerqLSTLQAQLSDMKKKLEEDAGTLEALEEGKKR 549
|
|
| CCDC73 |
pfam15818 |
Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil ... |
1012-1347 |
5.29e-09 |
|
Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil containing proteins. The function is not known. The alternative name is sarcoma antigen NY-SAR-79.
Pssm-ID: 464893 [Multi-domain] Cd Length: 1048 Bit Score: 61.12 E-value: 5.29e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1012 VSLEELKKENQQIINQ---IQESHAEIIQEKEKQLQelkLKVSDLSDTRCKLEVELALKEAETDEIKilleesraqqkET 1088
Cdd:pfam15818 35 VETQELKWQKETLQNQketLAKQHKEAMAVFKKQLQ---MKMCALEEEKGKYQLATEIKEKEIEGLK-----------ET 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1089 LKSLlEQETENLRTEISKLNQKIQDN---NENYQVGLAELRTLMT-----------------------IEKDQCISELIS 1142
Cdd:pfam15818 101 LKAL-QVSKYSLQKKVSEMEQKLQLHllaKEDHHKQLNEIEKYYAtitgqfglvkenhgkleqnvqeaIQLNKRLSALNK 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1143 RHEEESNILKAELNKVTS---------LHNQAFE-IEKNLKEQII-ELQSKLDSELsALERQKDEKITQ-QEEKYEAIIQ 1210
Cdd:pfam15818 180 KQESEICSLKKELKKVTSdlikskvtcQYKMGEEnINLTIKEQKFqELQERLNMEL-ELNKKINEEITHiQEEKQDIIIS 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1211 NleKDRQKLVSSQEQDREQLIQKLNCEKdEAIQTALKEFKLEREVVeKELLEKVKHLENQIAK------------SPAID 1278
Cdd:pfam15818 259 F--QHMQQLLQQQTQANTEMEAELKALK-ENNQTLERDNELQREKV-KENEEKFLNLQNEHEKalgtwkkhveelNGEIN 334
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 134304842 1279 STRGDSSSLvAELQEKLQEEKAKFLEQLEEQEKRKNEEMQNVrtsliaeqqTNFNTVLTREKMrkENII 1347
Cdd:pfam15818 335 EIKNELSSL-KETHIKLQEHYNKLCNQKKFEEDKKFQNVPEV---------NNENSEMSTEKS--ENLI 391
|
|
| CCDC73 |
pfam15818 |
Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil ... |
886-1315 |
5.33e-09 |
|
Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil containing proteins. The function is not known. The alternative name is sarcoma antigen NY-SAR-79.
Pssm-ID: 464893 [Multi-domain] Cd Length: 1048 Bit Score: 61.12 E-value: 5.33e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 886 EENENKIKKLKGELVCLEEVLQNKDNefALVKHEKEAVICLQNEKDQKL--LEMENIMHSQNCEIKElkqsREIvlEDLK 963
Cdd:pfam15818 27 EEQIGKIIVETQELKWQKETLQNQKE--TLAKQHKEAMAVFKKQLQMKMcaLEEEKGKYQLATEIKE----KEI--EGLK 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 964 klhvendEKLQLLRAELQSLeQSHLKELEDTLQVRHIQEfekvmTDHRVSLEELKKENQQIINQ---IQESHAEIIQEKE 1040
Cdd:pfam15818 99 -------ETLKALQVSKYSL-QKKVSEMEQKLQLHLLAK-----EDHHKQLNEIEKYYATITGQfglVKENHGKLEQNVQ 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1041 KQLQeLKLKVSDLSDTR----CKLEVElaLKEAETDEIKILLEESRAQQKETLK-SLLEQETENLRTEIS---KLNQKIQ 1112
Cdd:pfam15818 166 EAIQ-LNKRLSALNKKQeseiCSLKKE--LKKVTSDLIKSKVTCQYKMGEENINlTIKEQKFQELQERLNmelELNKKIN 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1113 DNNENYQVGLAELrtlmtIEKDQCISELISRHEEESNILKAELnKVTSLHNQAFEieknlkeqiielqskLDSELsaler 1192
Cdd:pfam15818 243 EEITHIQEEKQDI-----IISFQHMQQLLQQQTQANTEMEAEL-KALKENNQTLE---------------RDNEL----- 296
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1193 qKDEKITQQEEKYeaiiQNLEKDRQKLVSSQEQDREQLIQKLNCEKDEAIQTALKEFKLER---EVVEKELLEKVKHLEN 1269
Cdd:pfam15818 297 -QREKVKENEEKF----LNLQNEHEKALGTWKKHVEELNGEINEIKNELSSLKETHIKLQEhynKLCNQKKFEEDKKFQN 371
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|.
gi 134304842 1270 -QIAKSPAIDSTRGDSSSLVAE----LQEKLQEEKAKFLEQLEEQEKRKNE 1315
Cdd:pfam15818 372 vPEVNNENSEMSTEKSENLIIQkynsEQEIREENTKSFCSDTEYRETEKKK 422
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
870-1377 |
6.40e-09 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 60.55 E-value: 6.40e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 870 LKNEYEGKLDGLIKET----EENENKIKKLKGELvcleEVLQNKDNEFALVKHEKEaviclqnEKDQKLLEMENimhsqn 945
Cdd:COG4717 47 LLERLEKEADELFKPQgrkpELNLKELKELEEEL----KEAEEKEEEYAELQEELE-------ELEEELEELEA------ 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 946 cEIKELKQSREiVLEDLKKLHvENDEKLQLLRAELQSLEQsHLKELEDtlQVRHIQEFEKVMTDHRVSLEELKKENQQII 1025
Cdd:COG4717 110 -ELEELREELE-KLEKLLQLL-PLYQELEALEAELAELPE-RLEELEE--RLEELRELEEELEELEAELAELQEELEELL 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1026 NQIQESHAEIIQEKEKQLQELKLKVSDLSDTRCKLEVELALKEAETDEIKILLEESRAQQK-ETLKSLLEQETenLRTEI 1104
Cdd:COG4717 184 EQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERlKEARLLLLIAA--ALLAL 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1105 SKLNQKIQDNNENYQVGLAELRTLMTIEKDQCISELISRHEEESNILKAElnkvtslhnqafEIEKNLKEQIIELQSKLD 1184
Cdd:COG4717 262 LGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALP------------ALEELEEEELEELLAALG 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1185 SELSALERQKDEKITQQEEKYEAIIQNLEKDRQKLVSSQEQDREQLIQKLNCEKDEAIQTALKEFKLERevvekELLEKV 1264
Cdd:COG4717 330 LPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQ-----ELKEEL 404
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1265 KHLENQIAKSPaidstrGDSSSLVAELQEKLQEEKakfLEQLEEQEKRKNEEMQNvrtsliaeqqtnfntvLTREKMRKE 1344
Cdd:COG4717 405 EELEEQLEELL------GELEELLEALDEEELEEE---LEELEEELEELEEELEE----------------LREELAELE 459
|
490 500 510
....*....|....*....|....*....|....*
gi 134304842 1345 NIINDL--SDKLKSTMQQQERDKDLIESLSEDRAR 1377
Cdd:COG4717 460 AELEQLeeDGELAELLQELEELKAELRELAEEWAA 494
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
929-1478 |
6.56e-09 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 61.14 E-value: 6.56e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 929 EKDQKLLEMENIMHSQNCEIKELKQSREIVLEDLKKLHVENDEKLQLLRAELQSLEQSHLKELEdtlqvRHIQEFEKVMT 1008
Cdd:pfam02463 173 EALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNE-----ERIDLLQELLR 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1009 DHRVSLEELKKENQQIINQIQESHAEIIQE-KEKQLQELKLKVSDLSDTRCKLEVELALKEAETDEIKILLEESRAQQKE 1087
Cdd:pfam02463 248 DEQEEIESSKQEIEKEEEKLAQVLKENKEEeKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1088 tlKSLLEQETENLRTEISKLNQKIQDNNENYQVGLAELRTLMTIEKDQCISELISRHEEESNILKAELNKVTSlhnqafe 1167
Cdd:pfam02463 328 --KELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELE------- 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1168 iEKNLKEQIIELQSKL-DSELSALERQKDEKITQQEEKYEAIIQNLEKDRQKLVSSQEQDREQLIQKLNCEKDEAIQTAL 1246
Cdd:pfam02463 399 -LKSEEEKEAQLLLELaRQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKET 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1247 KEFKLEREVVEKELLEKVKHLENQIAKSPAIDSTRGDSSSLVAELQEKLQEEKAKFLEQLEEQEKRKNE---EMQNVRTS 1323
Cdd:pfam02463 478 QLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAIStavIVEVSATA 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1324 LIAEQQTNFNTVLTREK--MRKENIINDLSDKLKSTMQQQERDKDLIESLSEDRARLLEEKKKLEEEVSKLRSSSFVPSP 1401
Cdd:pfam02463 558 DEVEERQKLVRALTELPlgARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKL 637
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1402 YVATAPELYGACAPELPGESDRSAVETADEGRVDSAMETSMMSVQENIHMLS---EEKQRIMLLERTLQLKEEENKRLNQ 1478
Cdd:pfam02463 638 KESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELakeEILRRQLEIKKKEQREKEELKKLKL 717
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
926-1297 |
6.73e-09 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 61.08 E-value: 6.73e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 926 LQNEKDQKLLEMENIMHSQNCE--------IKELKQSreivLEDLKKLHVENDEKLQLLRAELQSLEQSHLKELEDTLQV 997
Cdd:PRK11281 45 LDALNKQKLLEAEDKLVQQDLEqtlalldkIDRQKEE----TEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLST 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 998 RHIQEFEKVMTDHRVSLEELKKE----NQQIIN---QIQESHAEI------IQEKEKQLQELKLKVSDLSDT-RCKLEVE 1063
Cdd:PRK11281 121 LSLRQLESRLAQTLDQLQNAQNDlaeyNSQLVSlqtQPERAQAALyansqrLQQIRNLLKGGKVGGKALRPSqRVLLQAE 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1064 LALKEAETDEIKILLEESraqqkETLKSLLEQETENLRTEISKLNQKIQD-----NNENYQVGLAELRTLMTIEKDQCIS 1138
Cdd:PRK11281 201 QALLNAQNDLQRKSLEGN-----TQLQDLLQKQRDYLTARIQRLEHQLQLlqeaiNSKRLTLSEKTVQEAQSQDEAARIQ 275
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1139 E--LISRhEEESN------ILKA--ELNKVT----SLHNQ---AFEIEKNLKEQIIELQ------------------SKL 1183
Cdd:PRK11281 276 AnpLVAQ-ELEINlqlsqrLLKAteKLNTLTqqnlRVKNWldrLTQSERNIKEQISVLKgslllsrilyqqqqalpsADL 354
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1184 DSELS---ALERQKDEKITQQEEKY---EAIIQNLEKDRQKLVSSQEqdREQLIQKLNcekdeaiqtalkefklEREvve 1257
Cdd:PRK11281 355 IEGLAdriADLRLEQFEINQQRDALfqpDAYIDKLEAGHKSEVTDEV--RDALLQLLD----------------ERR--- 413
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 134304842 1258 kELLEKV-KHLENQIAKSPAIDSTRGDSSSLVAELQEKLQE 1297
Cdd:PRK11281 414 -ELLDQLnKQLNNQLNLAINLQLNQQQLLSVSDSLQSTLTQ 453
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
863-1368 |
1.18e-08 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 59.77 E-value: 1.18e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 863 HQKELLSLKNEYEGKLDGLIKETEENENKIKKLK----GELVCLEEVLQNKD---NEFALVKHEKEAVICL-QNEKDQKL 934
Cdd:pfam07111 149 HQEQLSSLTQAHEEALSSLTSKAEGLEKSLNSLEtkraGEAKQLAEAQKEAEllrKQLSKTQEELEAQVTLvESLRKYVG 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 935 LEMENIMHSQNCEIKelkqsREIVLEDLKKLHVENDE---KLQLLRAELQSLeqSHLKELEDTLQVRHIQ-------EFE 1004
Cdd:pfam07111 229 EQVPPEVHSQTWELE-----RQELLDTMQHLQEDRADlqaTVELLQVRVQSL--THMLALQEEELTRKIQpsdslepEFP 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1005 K----VMTDHR-------VSLEELKKENQQIINQIQESHAEIIQEKEKQLQELKLKVSDLSDTRCKLEVE------LALK 1067
Cdd:pfam07111 302 KkcrsLLNRWRekvfalmVQLKAQDLEHRDSVKQLRGQVAELQEQVTSQSQEQAILQRALQDKAAEVEVErmsakgLQME 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1068 EAETDEIKILLEESRAQQKETLK---SLLEQETENLRTEISKLNQKIQdnnenyQVGLAELRTLMTIEKDQCISELISRh 1144
Cdd:pfam07111 382 LSRAQEARRRQQQQTASAEEQLKfvvNAMSSTQIWLETTMTRVEQAVA------RIPSLSNRLSYAVRKVHTIKGLMAR- 454
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1145 eeesNILKAELNKVTS-LHNQAFEIEKNLK---EQIIELQSKLDSELSALERQKDEKITQQEEKYEAIIQNLEKDRQKLV 1220
Cdd:pfam07111 455 ----KVALAQLRQESCpPPPPAPPVDADLSlelEQLREERNRLDAELQLSAHLIQQEVGRAREQGEAERQQLSEVAQQLE 530
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1221 SSQEQDREQLIQkLNCEKDEAIQTalkefklerevvEKELLEKVKHLENQIAKSPAIDSTrgdssslvaELQEKLQEEKA 1300
Cdd:pfam07111 531 QELQRAQESLAS-VGQQLEVARQG------------QQESTEEAASLRQELTQQQEIYGQ---------ALQEKVAEVET 588
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 134304842 1301 KFLEQLEEQEKRKNEEMQNVRTSLIAEQQTNFNTvlTREKMR-------KENIINDLSDKLKSTMQQQERDKDLI 1368
Cdd:pfam07111 589 RLREQLSDTKRRLNEARREQAKAVVSLRQIQHRA--TQEKERnqelrrlQDEARKEEGQRLARRVQELERDKNLM 661
|
|
| PTZ00440 |
PTZ00440 |
reticulocyte binding protein 2-like protein; Provisional |
866-1356 |
2.33e-08 |
|
reticulocyte binding protein 2-like protein; Provisional
Pssm-ID: 240419 [Multi-domain] Cd Length: 2722 Bit Score: 59.46 E-value: 2.33e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 866 ELLSLKNEYEGKLdgliketEENENKIKKLKGELVCLEEVLQNKDNEFALVKHEKEAVICLQN--EKDQKLLEMENIMHS 943
Cdd:PTZ00440 440 EIIEIKKKYDEKI-------NELKKSINQLKTLISIMKSFYDLIISEKDSMDSKEKKESSDSNyqEKVDELLQIINSIKE 512
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 944 QNCEIKELKQSREIVLEDLKKLHVENDEKLQLLRAELQSLEQSHLKELEDTL---QVRHIQEFEKVMTDHRVSLEELKKE 1020
Cdd:PTZ00440 513 KNNIVNNNFKNIEDYYITIEGLKNEIEGLIELIKYYLQSIETLIKDEKLKRSmknDIKNKIKYIEENVDHIKDIISLNDE 592
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1021 NQQIINQIQESHAEIIQEKEK---QLQELKLKVSDLSDTRCKLEvelaLKEAETDEIKILLEESRAQQKETLKSLLEQET 1097
Cdd:PTZ00440 593 IDNIIQQIEELINEALFNKEKfinEKNDLQEKVKYILNKFYKGD----LQELLDELSHFLDDHKYLYHEAKSKEDLQTLL 668
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1098 ENLRTEISKLNQKIQDNNENYQVGL-AELRTLMTIEKDQCISELISRHEEESNILKAELNKVTSLHNQAFEIEK------ 1170
Cdd:PTZ00440 669 NTSKNEYEKLEFMKSDNIDNIIKNLkKELQNLLSLKENIIKKQLNNIEQDISNSLNQYTIKYNDLKSSIEEYKEeeekle 748
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1171 NLKEQIIELQSKLDSELsaleRQKDEKITQQEEKYEAIIQNLE----------------KDRQKLVSSQEQDREQLIQKL 1234
Cdd:PTZ00440 749 VYKHQIINRKNEFILHL----YENDKDLPDGKNTYEEFLQYKDtilnkenkisndinilKENKKNNQDLLNSYNILIQKL 824
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1235 NC---EKDEAIQTALKEFKLEREVV-----EKELLEKVKHLENQIAK--------------SPAIDSTRGDSSSL----- 1287
Cdd:PTZ00440 825 EAhteKNDEELKQLLQKFPTEDENLnlkelEKEFNENNQIVDNIIKDienmnkniniiktlNIAINRSNSNKQLVehlln 904
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1288 -VAELQEKL--------------QEEKAKFLEQLEEQEKRKNEEMQNvrtSLIAEQQTNFNTVLTREKMRKENIINDLSD 1352
Cdd:PTZ00440 905 nKIDLKNKLeqhmkiintdniiqKNEKLNLLNNLNKEKEKIEKQLSD---TKINNLKMQIEKTLEYYDKSKENINGNDGT 981
|
....
gi 134304842 1353 KLKS 1356
Cdd:PTZ00440 982 HLEK 985
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
843-1373 |
2.36e-08 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 58.96 E-value: 2.36e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 843 EIRNIIEKVKCSLEITLKEKHQKeLLSLKNEY-------EGKLDGLIKETEENENKIKklkgELVCLEEVLQNKDNEFal 915
Cdd:pfam05483 201 ELRVQAENARLEMHFKLKEDHEK-IQHLEEEYkkeindkEKQVSLLLIQITEKENKMK----DLTFLLEESRDKANQL-- 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 916 vkhekEAVICLQNEKDQKLLEMEnimHSQNCEIKELKQSREIVLEDLKKLhvenDEKLQLLRAELQSLEQSHLKELEDTL 995
Cdd:pfam05483 274 -----EEKTKLQDENLKELIEKK---DHLTKELEDIKMSLQRSMSTQKAL----EEDLQIATKTICQLTEEKEAQMEELN 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 996 QVRHIQEFekVMTDHRV---SLEELKKENQQIINQIQESHAEIIQEKEKQLQELKlKVSDLSDTrcklevelalKEAETD 1072
Cdd:pfam05483 342 KAKAAHSF--VVTEFEAttcSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELE-EMTKFKNN----------KEVELE 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1073 EIKILLEESRAQQKEtlKSLLEQETENLRTEISKLNQKIQDNNEnyQVGLAELRTLMTIEKDQCISELISRHEEESNILK 1152
Cdd:pfam05483 409 ELKKILAEDEKLLDE--KKQFEKIAEELKGKEQELIFLLQAREK--EIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEK 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1153 AELNKVTSLHNQAFEIEKNLKEQIIELQSKLDSELSALERQKdekitQQEEKYEAIIQNLEKDRQKLVSSQEQDREQLIQ 1232
Cdd:pfam05483 485 LKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCK-----KQEERMLKQIENLEEKEMNLRDELESVREEFIQ 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1233 -----KLNCEKDEAIQTALKEFKLEREVVEKELLEKVKHLENQIA-KSPAIDSTRGDSSSL-----VAELQEKLQEEKAK 1301
Cdd:pfam05483 560 kgdevKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIEnKNKNIEELHQENKALkkkgsAENKQLNAYEIKVN 639
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 134304842 1302 FLEQLEEQEKRKNEEMQNVRTSLIAEQQTNFNTVLtrEKMRKENIINDLSDKLkstmqQQERDKDLIESLSE 1373
Cdd:pfam05483 640 KLELELASAKQKFEEIIDNYQKEIEDKKISEEKLL--EEVEKAKAIADEAVKL-----QKEIDKRCQHKIAE 704
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
841-1374 |
2.47e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 59.38 E-value: 2.47e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 841 AVEIRNIIEKVKCSLEITLKEKHQKELLSLKNEYEGKLDGLIKETEENENKIKKLKGELvclEEvlQNKDNEFALVKHEK 920
Cdd:PTZ00121 1280 ADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKA---EE--AKKAAEAAKAEAEA 1354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 921 EAVICLQNEKDQKLLEMENIMHSQNCEIKELKQSREIVLEDLKKLHVENDEKL-QLLRAELQSLEQSHLKELEDtlQVRH 999
Cdd:PTZ00121 1355 AADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKAdELKKAAAAKKKADEAKKKAE--EKKK 1432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1000 IQEFEKVMTDHRVSlEELKKENQQiinQIQESHAEIIQEKEKQLQELKLKVSDlsdtrcKLEVELALKEAETDEIKILLE 1079
Cdd:PTZ00121 1433 ADEAKKKAEEAKKA-DEAKKKAEE---AKKAEEAKKKAEEAKKADEAKKKAEE------AKKADEAKKKAEEAKKKADEA 1502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1080 ESRAQQKETLKSLLEQETENLRTEISKLNQKiqdnnenyqvglaelrtlmtiekdqciselisRHEEESNilKAELNKVT 1159
Cdd:PTZ00121 1503 KKAAEAKKKADEAKKAEEAKKADEAKKAEEA--------------------------------KKADEAK--KAEEKKKA 1548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1160 SLHNQAFEIEKNLKEQIIElQSKLDSELSALERQKDEKITQQEEKYEAIIQNLEKDRQKLVSSQ-EQDREQLIQKLNCEK 1238
Cdd:PTZ00121 1549 DELKKAEELKKAEEKKKAE-EAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEaKKAEEAKIKAEELKK 1627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1239 DEAIQTALKEFKlEREVVEKELLEKVKHLENQIAKSPAIDSTRGDSSSLVAELQEKLQEEKAKFLEQL--EEQEKRKNEE 1316
Cdd:PTZ00121 1628 AEEEKKKVEQLK-KKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALkkEAEEAKKAEE 1706
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*...
gi 134304842 1317 MQNVRtsliAEQqtnfntVLTREKMRKENIINDLsdKLKSTMQQQERDKDLIESLSED 1374
Cdd:PTZ00121 1707 LKKKE----AEE------KKKAEELKKAEEENKI--KAEEAKKEAEEDKKKAEEAKKD 1752
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
917-1276 |
3.01e-08 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 58.60 E-value: 3.01e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 917 KHEKEAVICLQNEKDQKLLEME---NIMHSQNCEIKELKQSREIVLEDlKKLHVENDEKLQLLRAELQSLEQSHLKELED 993
Cdd:pfam17380 292 KFEKMEQERLRQEKEEKAREVErrrKLEEAEKARQAEMDRQAAIYAEQ-ERMAMERERELERIRQEERKRELERIRQEEI 370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 994 TLQVRHIQEFEkvmtdhRVSLEELKKeNQQIINQIQESHAEIIQEKEKQlQELKLKVSDLSDTRCKLEvelalkEAETDE 1073
Cdd:pfam17380 371 AMEISRMRELE------RLQMERQQK-NERVRQELEAARKVKILEEERQ-RKIQQQKVEMEQIRAEQE------EARQRE 436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1074 IKILlEESRAQQKETLKslleQETENLRTEISKLNQKIQDNNenyqvglaelRTLMTIEKDQCISELIsrHEEESNILKA 1153
Cdd:pfam17380 437 VRRL-EEERAREMERVR----LEEQERQQQVERLRQQEEERK----------RKKLELEKEKRDRKRA--EEQRRKILEK 499
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1154 ELNKvtslhNQAFEIEKNLKEQIIELQSKldselsalERQKdeKITQQEEKYEAiiqnlEKDRQKLVSSQEQDREQliqk 1233
Cdd:pfam17380 500 ELEE-----RKQAMIEEERKRKLLEKEME--------ERQK--AIYEEERRREA-----EEERRKQQEMEERRRIQ---- 555
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 134304842 1234 lncekdEAIQTALKE-FKLEREVVEKELLEKVKHLENQIAKSPA 1276
Cdd:pfam17380 556 ------EQMRKATEErSRLEAMEREREMMRQIVESEKARAEYEA 593
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
843-1395 |
3.46e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.54 E-value: 3.46e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 843 EIRNIIEKVKCSLEITLKEKHQKE----LLSLKNEYEGKLdgLIKETEENENKIKKLKGELVCLEEVLQNKD---NEFAL 915
Cdd:TIGR02169 188 RLDLIIDEKRQQLERLRREREKAEryqaLLKEKREYEGYE--LLKEKEALERQKEAIERQLASLEEELEKLTeeiSELEK 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 916 VKHEKEAVICLQNEKDQKLLEMENI-----MHSQNCEIKELKQS---REIVLEDLKKLHVENDEKLQLLRAELQSLE--- 984
Cdd:TIGR02169 266 RLEEIEQLLEELNKKIKDLGEEEQLrvkekIGELEAEIASLERSiaeKERELEDAEERLAKLEAEIDKLLAEIEELErei 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 985 ----------QSHLKELEDTLQVRhIQEFEKVMTDHRVSLEELKKEnQQIINQIQESHAEIIQEKEKQLQELKLKVSDLS 1054
Cdd:TIGR02169 346 eeerkrrdklTEEYAELKEELEDL-RAELEEVDKEFAETRDELKDY-REKLEKLKREINELKRELDRLQEELQRLSEELA 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1055 DTRCKLEV---ELALKEAETDEIKILLEESRAQQKETLKSL--LEQETENLRTEISKLNQKIQDNNENYQVGLAELRTLM 1129
Cdd:TIGR02169 424 DLNAAIAGieaKINELEEEKEDKALEIKKQEWKLEQLAADLskYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASE 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1130 TIEKD-QCISELISRHEEESNILKAELNKVTSLHNQAFEIEKNLKEQIIELQSKLDSElSALERQKDEKITQQ------- 1201
Cdd:TIGR02169 504 ERVRGgRAVEEVLKASIQGVHGTVAQLGSVGERYATAIEVAAGNRLNNVVVEDDAVAK-EAIELLKRRKAGRAtflplnk 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1202 --------------------------EEKYEAIIQNLEKDrQKLVSSQEQDREQLIQ----KLN---CEKDEAI------ 1242
Cdd:TIGR02169 583 mrderrdlsilsedgvigfavdlvefDPKYEPAFKYVFGD-TLVVEDIEAARRLMGKyrmvTLEgelFEKSGAMtggsra 661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1243 QTALKEFKLEREVVEKELLEKVKHLENQ----IAKSPAIDSTRGDSSSLVAELQEKLqEEKAKFLEQLEEQEKRKNEEMQ 1318
Cdd:TIGR02169 662 PRGGILFSRSEPAELQRLRERLEGLKRElsslQSELRRIENRLDELSQELSDASRKI-GEIEKEIEQLEQEEEKLKERLE 740
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 134304842 1319 NVRTSLIAEQQTnfntvLTREKMRKENIINDLSDKLKSTMQQQERDKDLIESLSEDRARLLEEKKKL-EEEVSKLRSS 1395
Cdd:TIGR02169 741 ELEEDLSSLEQE-----IENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKlEEEVSRIEAR 813
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
854-1375 |
4.30e-08 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 57.91 E-value: 4.30e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 854 SLEITLKEKhQKELLSLKNEYEGKLDGLIK--ETEENENKIKKLKGELVCLEEVLQNKDNEFALVKHEKEaVICLQNEKD 931
Cdd:pfam10174 196 HLEVLLDQK-EKENIHLREELHRRNQLQPDpaKTKALQTVIEMKDTKISSLERNIRDLEDEVQMLKTNGL-LHTEDREEE 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 932 QKLLEMENiMHSQ--NCEIKELKQ-----SREIV-----LEDLKKLHVENDEKLQLLRAELQSLEQ--SHLKELEDTLQV 997
Cdd:pfam10174 274 IKQMEVYK-SHSKfmKNKIDQLKQelskkESELLalqtkLETLTNQNSDCKQHIEVLKESLTAKEQraAILQTEVDALRL 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 998 RhIQEFEKVMTDHRVSLEELKKE-----------------NQQIINQIQ---ESHAEIIQEKEKQLQELKLKVSDLSDTR 1057
Cdd:pfam10174 353 R-LEEKESFLNKKTKQLQDLTEEkstlageirdlkdmldvKERKINVLQkkiENLQEQLRDKDKQLAGLKERVKSLQTDS 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1058 CKLEVELA-LKEAETDEIKILleESRAQQKETLKSLLEQETENLRTEISKLNQKiqdnnenyqvgLAELRTLMTiEKDQC 1136
Cdd:pfam10174 432 SNTDTALTtLEEALSEKERII--ERLKEQREREDRERLEELESLKKENKDLKEK-----------VSALQPELT-EKESS 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1137 ISELisrheeesnilkaeLNKVTSLHNQAFEIEKNLKEQIIELQSKLDsELSALERQ--KDEKITQQEEKYEAI---IQN 1211
Cdd:pfam10174 498 LIDL--------------KEHASSLASSGLKKDSKLKSLEIAVEQKKE-ECSKLENQlkKAHNAEEAVRTNPEIndrIRL 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1212 LEKD--RQKLVSSQEQ-DREQLIQklncekdeaiqtALKEFKLEREVVEKELLEKVKHLENQIaKSPAIDstrgdssslV 1288
Cdd:pfam10174 563 LEQEvaRYKEESGKAQaEVERLLG------------ILREVENEKNDKDKKIAELESLTLRQM-KEQNKK---------V 620
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1289 AELQEKLQEEKAKFLEQLEEQEKRKNEEMQNVRTSLIAEqqtnfnTVLTREKMRKEniINDLSDKLKSTMQQ-QERDKDL 1367
Cdd:pfam10174 621 ANIKHGQQEMKKKGAQLLEEARRREDNLADNSQQLQLEE------LMGALEKTRQE--LDATKARLSSTQQSlAEKDGHL 692
|
....*...
gi 134304842 1368 iESLSEDR 1375
Cdd:pfam10174 693 -TNLRAER 699
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
861-1362 |
4.89e-08 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 58.06 E-value: 4.89e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 861 EKHQKELLSLKNEYEGKLDGLIKETEENENKiKKLKGELVCLEEVLQNKDNEFALVKHEKEavicLQNEKDQKLLEMENI 940
Cdd:TIGR00618 228 LKHLREALQQTQQSHAYLTQKREAQEEQLKK-QQLLKQLRARIEELRAQEAVLEETQERIN----RARKAAPLAAHIKAV 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 941 MH------SQNCEIKELKQSREIVLEDLKKLHVENDEKLQLLRAELQSLEQSHLKELEDTLQVRHIQEFEKVMTDhrvsL 1014
Cdd:TIGR00618 303 TQieqqaqRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTL----T 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1015 EELKKENQQIINQIQEShaEIIQEKEKQLQELKLKVSDLSDTRCKLEVELALKEAETDEIKILLEESRAQQKETLKSLLE 1094
Cdd:TIGR00618 379 QHIHTLQQQKTTLTQKL--QSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKL 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1095 QETE------NLRTEISKLNQKIQDNNENYQVGLAELRTLMTIEKDQCISELISRHEEESNILKAELNKVTSL------- 1161
Cdd:TIGR00618 457 EKIHlqesaqSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRmqrgeqt 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1162 HNQAFEIEKNLKEQIIEL--QSKLDSELSALERQKDEKITQQEEKYEAII---QNLEKDRQKLVSSQEQDREQLIQKLNC 1236
Cdd:TIGR00618 537 YAQLETSEEDVYHQLTSErkQRASLKEQMQEIQQSFSILTQCDNRSKEDIpnlQNITVRLQDLTEKLSEAEDMLACEQHA 616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1237 EKDEA-IQTALKEFKLEREVVEKELLEKVKHLENQIAKSPAIDSTRGDSSSLVAELQEKLQEEKAKFLEQLEEQEKRKNE 1315
Cdd:TIGR00618 617 LLRKLqPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWK 696
|
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 134304842 1316 EMQNVRTSLIAEQQTnfnTVLTREKMRKEniINDLSDKLKSTMQQQE 1362
Cdd:TIGR00618 697 EMLAQCQTLLRELET---HIEEYDREFNE--IENASSSLGSDLAARE 738
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
815-1394 |
4.98e-08 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 58.14 E-value: 4.98e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 815 IKEDLCH--FRTFVQKEQCDFSNSLKCTAVEIRNIIEKVkcsleitlkEKHQKELLSLKNEyegkldgliketeeNENKI 892
Cdd:TIGR01612 1089 IKEKLKHynFDDFGKEENIKYADEINKIKDDIKNLDQKI---------DHHIKALEEIKKK--------------SENYI 1145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 893 KKLKGELVCLEEVLQNK-DNEFALVKHEKEAVICLQNEKDQKLLEMENIMHSQNCEIKELKQSREIVL-------EDLKK 964
Cdd:TIGR01612 1146 DEIKAQINDLEDVADKAiSNDDPEEIEKKIENIVTKIDKKKNIYDEIKKLLNEIAEIEKDKTSLEEVKginlsygKNLGK 1225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 965 LHVEN-DEKLQLLRAELQSLEqSHLKELEDTL-QVRHIQEFEKVMTDHRVSLEEL-----KKENQQIINQIQESHAEIIQ 1037
Cdd:TIGR01612 1226 LFLEKiDEEKKKSEHMIKAME-AYIEDLDEIKeKSPEIENEMGIEMDIKAEMETFnishdDDKDHHIISKKHDENISDIR 1304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1038 EKEKQLQELKLKVSDLSDTRCKLEVELALKEAETDEIKILLEESraqqkETLKSLLE-QETENLRTEISKLNQKIQDNNE 1116
Cdd:TIGR01612 1305 EKSLKIIEDFSEESDINDIKKELQKNLLDAQKHNSDINLYLNEI-----ANIYNILKlNKIKKIIDEVKEYTKEIEENNK 1379
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1117 NYQVGLAELRTLM-TIEKDQCISELISRHE------------------------EESNI-----LKAELNKVTSLHNQAF 1166
Cdd:TIGR01612 1380 NIKDELDKSEKLIkKIKDDINLEECKSKIEstlddkdidecikkikelknhilsEESNIdtyfkNADENNENVLLLFKNI 1459
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1167 EIEKNLKEQIIELQ-----SKLDSELSALERQKD---------EKITQQEEKYEAIIQNLEKDRQKL------------V 1220
Cdd:TIGR01612 1460 EMADNKSQHILKIKkdnatNDHDFNINELKEHIDkskgckdeaDKNAKAIEKNKELFEQYKKDVTELlnkysalaiknkF 1539
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1221 SSQEQDREQLIQKlncekdeaIQTALKEFKLEREVVEKELlEKVKH----LENQIAKSpaidstrGDSSSLVAELQEKLQ 1296
Cdd:TIGR01612 1540 AKTKKDSEIIIKE--------IKDAHKKFILEAEKSEQKI-KEIKKekfrIEDDAAKN-------DKSNKAAIDIQLSLE 1603
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1297 EEKAKFLeQLEEQEKRKNEEMQnvRTSLIAEQQTNFNtvltrekmrkeniINDLSDKLKSTMQQQERDKDLIESLSEDRA 1376
Cdd:TIGR01612 1604 NFENKFL-KISDIKKKINDCLK--ETESIEKKISSFS-------------IDSQDTELKENGDNLNSLQEFLESLKDQKK 1667
|
650
....*....|....*...
gi 134304842 1377 RLLEEKKKLEEEVSKLRS 1394
Cdd:TIGR01612 1668 NIEDKKKELDELDSEIEK 1685
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
840-1316 |
5.34e-08 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 58.13 E-value: 5.34e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 840 TAVEIRNIIEKVKCSLEITLKEkhQKELLSLKNEYEGKLDGLIKETEENENKIKKLKGELVCLEEVLQNKDNEFALVKHE 919
Cdd:TIGR00606 689 TEAELQEFISDLQSKLRLAPDK--LKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKND 766
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 920 KEaviclqneKDQKLLEMENimhsQNCEIKELKQSREIVLEDLKKLHVENDEKLQLLRAELQSLEQShlkeledtlqvRH 999
Cdd:TIGR00606 767 IE--------EQETLLGTIM----PEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLD-----------RT 823
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1000 IQEFEKVMTDhrvsleelKKENQQIINQIQESHAEIIQEKEKQLQELKLKVSDLSDTRCKLEVELAlkeaetdeikille 1079
Cdd:TIGR00606 824 VQQVNQEKQE--------KQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQ-------------- 881
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1080 esRAQQketlkslLEQETENLRTEISKLNQKIQDNNENyqvglaELRTLMTIEKDQC-ISELISRHEEESNILKAELN-- 1156
Cdd:TIGR00606 882 --RRQQ-------FEEQLVELSTEVQSLIREIKDAKEQ------DSPLETFLEKDQQeKEELISSKETSNKKAQDKVNdi 946
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1157 --KVTSLHNQAFEIEKNLKEQIIELQSKLDSELSALERQKDEkitqQEEKYEAIIQNLEKDRQKLVSSQEQDReQLIQKL 1234
Cdd:TIGR00606 947 keKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEE----CEKHQEKINEDMRLMRQDIDTQKIQER-WLQDNL 1021
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1235 NCEKdeaIQTALKEFKLEREVVEKELLE-KVKHLENQIAKSPAIDSTRGDSSSLVAELQEKLQEEKAKFLEQLEEQEKRK 1313
Cdd:TIGR00606 1022 TLRK---RENELKEVEEELKQHLKEMGQmQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQFRD 1098
|
...
gi 134304842 1314 NEE 1316
Cdd:TIGR00606 1099 AEE 1101
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
861-1273 |
6.00e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.64 E-value: 6.00e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 861 EKHQKELLSLKNEYEGKLDGLIKETEENENKIKKLKGELVCLEEVLQNKDNEFALVKHEKEAVICLQNEKDQKLLEMENI 940
Cdd:COG1196 315 EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRA 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 941 MHSQNCEIKELKQSREIVLEDLKKLHVENDEKLQLLRAELQSLEQSHLKELEDTLQVRHIQEFEKVMTDHRVSLEELKKE 1020
Cdd:COG1196 395 AAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAAL 474
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1021 NQQIINQIQESHAEIIQEKEKQLQELKLKVSDLSDTR--------------------CKLEVELALKEA----------E 1070
Cdd:COG1196 475 LEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKaalllaglrglagavavligVEAAYEAALEAAlaaalqnivvE 554
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1071 TDEIKILLEESRAQQKETLKSLLEQETENLRTEISKLNQK--------------IQDNNENYQVGLAELRTLMTIEKDQC 1136
Cdd:COG1196 555 DDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARgaigaavdlvasdlREADARYYVLGDTLLGRTLVAARLEA 634
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1137 ISELISRHEEESNILKAELNKVTSLHNQAFEIEKNL-------KEQIIELQSKLDSELSALERQKDEKITQQEEKYEAII 1209
Cdd:COG1196 635 ALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELlaalleaEAELEELAERLAEEELELEEALLAEEEEERELAEAEE 714
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 134304842 1210 QNLEKDRQKLVSSQEQDREQLIQKLNCEKDEAIQTALKEFKLEREVVEKELLEKVKHLENQIAK 1273
Cdd:COG1196 715 ERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1068-1397 |
7.48e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.37 E-value: 7.48e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1068 EAETDEIKILLEES------RAQQKETLKSLLEQET-----ENLRTEISKLNQKIQDnnenyQVGLAE-LRTLMTIEKDQ 1135
Cdd:TIGR02168 151 EAKPEERRAIFEEAagiskyKERRKETERKLERTREnldrlEDILNELERQLKSLER-----QAEKAErYKELKAELREL 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1136 CISELISRHEEesniLKAELNKVTSLHNQAFEIEKNLKEQIIELQSKLdSELSALERQKDEKITQQEEKYEAI---IQNL 1212
Cdd:TIGR02168 226 ELALLVLRLEE----LREELEELQEELKEAEEELEELTAELQELEEKL-EELRLEVSELEEEIEELQKELYALaneISRL 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1213 EKDRQKLVSSQEQDREQLIQK-LNCEKDEAIQTALKEFKLEREVVEKELLEKVKHLENQIAKSPAidsTRGDSSSLVAEL 1291
Cdd:TIGR02168 301 EQQKQILRERLANLERQLEELeAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEA---ELEELESRLEEL 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1292 QEKLQEEKAKFLeQLEEQEKRKNEEMQNVRTSL--IAEQQTNFNTVLT-----REKMRKENIINDLSDKLKSTMQQQERD 1364
Cdd:TIGR02168 378 EEQLETLRSKVA-QLELQIASLNNEIERLEARLerLEDRRERLQQEIEellkkLEEAELKELQAELEELEEELEELQEEL 456
|
330 340 350
....*....|....*....|....*....|...
gi 134304842 1365 KDLIESLSEDRARLLEEKKKLEEEVSKLRSSSF 1397
Cdd:TIGR02168 457 ERLEEALEELREELEEAEQALDAAERELAQLQA 489
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1080-1330 |
8.16e-08 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 56.38 E-value: 8.16e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1080 ESRAQQKETLKSLLEQETENLRTEISKLNQKIQDNNENYQVGLAELRTLmtiekdqciselisrhEEESNILKAELNKVT 1159
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEAL----------------QAEIDKLQAEIAEAE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1160 SLHNQAFEIeknLKEQIIELQ--SKLDSELSALERQKD--EKITQQEekyeaIIQNLEKDRQKLVSSQEQDREQLiqkln 1235
Cdd:COG3883 79 AEIEERREE---LGERARALYrsGGSVSYLDVLLGSESfsDFLDRLS-----ALSKIADADADLLEELKADKAEL----- 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1236 cekdEAIQTALKEFKLEREVVEKELLEKVKHLENQIAkspaidstrgDSSSLVAEL---QEKLQEEKAKFLEQLEEQEKR 1312
Cdd:COG3883 146 ----EAKKAELEAKLAELEALKAELEAAKAELEAQQA----------EQEALLAQLsaeEAAAEAQLAELEAELAAAEAA 211
|
250
....*....|....*...
gi 134304842 1313 KNEEMQNVRTSLIAEQQT 1330
Cdd:COG3883 212 AAAAAAAAAAAAAAAAAA 229
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1034-1375 |
8.62e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.39 E-value: 8.62e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1034 EIIQEKEKQLQELKLKVSDLSDTRCKLEVELALKEaETDEIKILLEESRAQQKETLKSLLEQETENLRTEISKLNQKIQD 1113
Cdd:TIGR02169 177 EELEEVEENIERLDLIIDEKRQQLERLRREREKAE-RYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEK 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1114 nnenyqvglaelrtlmtiekdqcISELISRHEEESNILKAELNKVTSlhnqafEIEKNLKEQIIELQSKLDS---ELSAL 1190
Cdd:TIGR02169 256 -----------------------LTEEISELEKRLEEIEQLLEELNK------KIKDLGEEEQLRVKEKIGEleaEIASL 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1191 ERQKDEKITQQEEkyeaiiqnLEKDRQKLVSSQEQDREQLiqklncekdEAIQTALKEFKLEREVVEKELLEKVKHLEnq 1270
Cdd:TIGR02169 307 ERSIAEKERELED--------AEERLAKLEAEIDKLLAEI---------EELEREIEEERKRRDKLTEEYAELKEELE-- 367
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1271 iakspaidstrgdssSLVAELQEKLQEEKAKFLEQLEEQEKRknEEMQNVRTSLIAEQQTNFNTvLTREKMRKENIINDL 1350
Cdd:TIGR02169 368 ---------------DLRAELEEVDKEFAETRDELKDYREKL--EKLKREINELKRELDRLQEE-LQRLSEELADLNAAI 429
|
330 340
....*....|....*....|....*
gi 134304842 1351 SDKLKSTMQQQERDKDLIESLSEDR 1375
Cdd:TIGR02169 430 AGIEAKINELEEEKEDKALEIKKQE 454
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
834-1254 |
1.77e-07 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 55.73 E-value: 1.77e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 834 SNSLKCTAVEIRNIIEKVKCSLEITLKEKHQKELLSLKNEYEGK-LDGLIKETEENENKIKKLKG-ELVCLEEVLQNKDN 911
Cdd:COG5185 139 KVEKLDEIADIEASYGEVETGIIKDIFGKLTQELNQNLKKLEIFgLTLGLLKGISELKKAEPSGTvNSIKESETGNLGSE 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 912 EFALVKHEKEAVICLQNEKDQKLLEMENIMHSQNCEIKE-LKQSREIVLEDLKKlHVENDEKLQLLRAELQSLEQSHLKE 990
Cdd:COG5185 219 STLLEKAKEIINIEEALKGFQDPESELEDLAQTSDKLEKlVEQNTDLRLEKLGE-NAESSKRLNENANNLIKQFENTKEK 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 991 LEDTLQ----VRHIQEFEKVM--TDHRVSLEELKKENQQIINQIQEshaEIIQEKEKQLQELKLKVSDLSdtRCKLEVEL 1064
Cdd:COG5185 298 IAEYTKsidiKKATESLEEQLaaAEAEQELEESKRETETGIQNLTA---EIEQGQESLTENLEAIKEEIE--NIVGEVEL 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1065 ALKEAETDEIKILLEESRAQQKETLKSLLEQETENLRTEISklNQKIQDNNenyqvgLAELRTlmtiekdqCISELISRH 1144
Cdd:COG5185 373 SKSSEELDSFKDTIESTKESLDEIPQNQRGYAQEILATLED--TLKAADRQ------IEELQR--------QIEQATSSN 436
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1145 EEESNILKAELNkvtSLHNQAFEIEKNLKEQIIELQSKLDSELSALERQKDEKITQQEEKYEAIIQNLEKDRQKLVSSQE 1224
Cdd:COG5185 437 EEVSKLLNELIS---ELNKVMREADEESQSRLEEAYDEINRSVRSKKEDLNEELTQIESRVSTLKATLEKLRAKLERQLE 513
|
410 420 430
....*....|....*....|....*....|
gi 134304842 1225 QDREQLIQKLNCEKDEAIQTALKEFKLERE 1254
Cdd:COG5185 514 GVRSKLDQVAESLKDFMRARGYAHILALEN 543
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
947-1375 |
1.85e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 56.20 E-value: 1.85e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 947 EIKELKQSREIV---LEDLKKLHVENDEKlqllRAELQSLEQShLKELEDTLQ--VRHIQEFEKVMTDHRVSLEELKKEN 1021
Cdd:PRK02224 221 EIERYEEQREQAretRDEADEVLEEHEER----REELETLEAE-IEDLRETIAetEREREELAEEVRDLRERLEELEEER 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1022 QQIINQIQESHAEIiQEKEKQLQELKLKVSDLSDT--RCKLEVELALKEAETDEIKILLEESRAQQKETLKSLLEQETEN 1099
Cdd:PRK02224 296 DDLLAEAGLDDADA-EAVEARREELEDRDEELRDRleECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEE 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1100 LRTEISKLNQKIQDNNEnyqvglaELRTLmtiekdqciselisrhEEESNILKAELNKVTSLHNQAFEIEKNLKEQIIEL 1179
Cdd:PRK02224 375 AREAVEDRREEIEELEE-------EIEEL----------------RERFGDAPVDLGNAEDFLEELREERDELREREAEL 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1180 QSKLDSELSALErqKDEKITQ--------QEEKYEAIIQNLEKDRQKlVSSQEQDREQLIQKLNcEKDEAIQTALKEFKL 1251
Cdd:PRK02224 432 EATLRTARERVE--EAEALLEagkcpecgQPVEGSPHVETIEEDRER-VEELEAELEDLEEEVE-EVEERLERAEDLVEA 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1252 EREVveKELLEKVKHLENQIA--------KSPAIDSTRGDSSSLVAELQEK------LQEEKAKFLEQLEEQEKRKN--- 1314
Cdd:PRK02224 508 EDRI--ERLEERREDLEELIAerretieeKRERAEELRERAAELEAEAEEKreaaaeAEEEAEEAREEVAELNSKLAelk 585
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 134304842 1315 ---EEMQNVRTSLIAEQQTNFNTVLTREKMRKENIINDLS-DKLKStmqQQERDKDLIESLSEDR 1375
Cdd:PRK02224 586 eriESLERIRTLLAAIADAEDEIERLREKREALAELNDERrERLAE---KRERKRELEAEFDEAR 647
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
1123-1265 |
4.84e-07 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 54.83 E-value: 4.84e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1123 AELRTLMTIEKDQcISELISRHEEESNILKAELNKVTSLHNQAFEIEKNLKEQIIELQSKLDSELSALERQKDEKITQQE 1202
Cdd:PRK00409 505 EEAKKLIGEDKEK-LNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAK 583
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 134304842 1203 EKYEAIIQNLEKDRQKLVSSQ-EQDREQLIQKLNcekdEAIQTALKEFKLEREVVEK-ELLEKVK 1265
Cdd:PRK00409 584 KEADEIIKELRQLQKGGYASVkAHELIEARKRLN----KANEKKEKKKKKQKEKQEElKVGDEVK 644
|
|
| EzrA |
COG4477 |
Septation ring formation regulator EzrA [Cell cycle control, cell division, chromosome ... |
928-1306 |
5.13e-07 |
|
Septation ring formation regulator EzrA [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443574 [Multi-domain] Cd Length: 567 Bit Score: 54.46 E-value: 5.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 928 NEKDQKLLEMENIMHSQNCEIKELKQSreivLEDLKKLHVENDEKLQLLRAELqsLEQSH-----LKELEDTLQV--RHI 1000
Cdd:COG4477 107 DEIEQLLDEIEEEIEEILEELEELLES----EEKNREEIEELKEKYRELRKTL--LAHRHsfgpaAEELEKQLEElePEF 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1001 QEFEKVMT--DH---RVSLEELKKEN---QQIINQIQESHAEIIQEKEKQLQELK---------------LKV-SDLSDT 1056
Cdd:COG4477 181 EEFEELTEsgDYleaREILEQLEEELnalEELMEEIPPLLKELQTELPDQLEELKsgyremkeqgyvlehLNIeKEIEQL 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1057 RCKL-EVELALKEAETDEIKILLEESrAQQKETLKSLLEQE------TENLRTEISKLNQKIQDNNENYQVGLAELRTLM 1129
Cdd:COG4477 261 EEQLkEALELLEELDLDEAEEELEEI-EEEIDELYDLLEKEveakkyVDKNQEELEEYLEHLKEQNRELKEEIDRVQQSY 339
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1130 TIekdqciselisrHEEESNILKAELNKVTSLHNQAFEIEKNLKEQII---ELQSKLDSElsalerqkDEKITQQEEKYE 1206
Cdd:COG4477 340 RL------------NENELEKVRNLEKQIEELEKRYDEIDERIEEEKVaysELQEELEEI--------EEQLEEIEEEQE 399
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1207 AI---IQNLEKD----RQKLVSSQEQDRE--QLIQKLNcekdeaIQTALKEFKLEREVVEkellEKVKHLENQIAKSP-- 1275
Cdd:COG4477 400 EFsekLKSLRKDeleaREKLDELKKKLREikRRLEKSN------LPGLPEEYLEMFEEAS----DEIEELSEELNEVPln 469
|
410 420 430
....*....|....*....|....*....|....*
gi 134304842 1276 --AIDSTRGDSSSLVAELQEKLQE--EKAKFLEQL 1306
Cdd:COG4477 470 mdEVNRLLEEAEEDIETLEEKTEElvENATLTERL 504
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
845-1262 |
5.38e-07 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 55.06 E-value: 5.38e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 845 RNIIEKVKCSLEITLKEKHQKELLSLKNEYEGKLDGliKETEENENKIKKLKGELVCLEevlQNKDNEFALVKHEKEAV- 923
Cdd:TIGR01612 1379 KNIKDELDKSEKLIKKIKDDINLEECKSKIESTLDD--KDIDECIKKIKELKNHILSEE---SNIDTYFKNADENNENVl 1453
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 924 -----ICLQNEKDQKLLEME--NIMHSQNCEIKELKQSREivleDLKKLHVENDEKLQLLRAELQSLEQsHLKELEDTLQ 996
Cdd:TIGR01612 1454 llfknIEMADNKSQHILKIKkdNATNDHDFNINELKEHID----KSKGCKDEADKNAKAIEKNKELFEQ-YKKDVTELLN 1528
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 997 VRHIQEFEKvmtdhrvSLEELKKENQQIINQIQESHAEIIQEKEKQLQELKlkvsdlsdtrcklevelalkeaETDEIKI 1076
Cdd:TIGR01612 1529 KYSALAIKN-------KFAKTKKDSEIIIKEIKDAHKKFILEAEKSEQKIK----------------------EIKKEKF 1579
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1077 LLEESRAQQKETLKSLLEQET--ENLRT---EISKLNQKIQDNnenyqvglaeLRTLMTIEKDqcISEL-ISRHEEESNI 1150
Cdd:TIGR01612 1580 RIEDDAAKNDKSNKAAIDIQLslENFENkflKISDIKKKINDC----------LKETESIEKK--ISSFsIDSQDTELKE 1647
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1151 LKAELNKVT----SLHNQafeiEKNLKEQIIELqSKLDSELSALERQKDekitQQEEKYE-AIIQNLEK----DRQKLVS 1221
Cdd:TIGR01612 1648 NGDNLNSLQefleSLKDQ----KKNIEDKKKEL-DELDSEIEKIEIDVD----QHKKNYEiGIIEKIKEiaiaNKEEIES 1718
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 134304842 1222 SQEQDR---EQLIQKLNCEKDEAIQT--ALKEFKLEREVVEKELLE 1262
Cdd:TIGR01612 1719 IKELIEptiENLISSFNTNDLEGIDPneKLEEYNTEIGDIYEEFIE 1764
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
947-1374 |
6.13e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 54.59 E-value: 6.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 947 EIKELKQSREIVLEDLKKlHVENDEKLQLLRAELQSLEQsHLKELEDTLqvrhiqefekvmTDHRVSLEELKKENQQIIN 1026
Cdd:TIGR00618 171 NLFPLDQYTQLALMEFAK-KKSLHGKAELLTLRSQLLTL-CTPCMPDTY------------HERKQVLEKELKHLREALQ 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1027 QIQESHAEIIQEKEKQLQELKLKvSDLSDTRCKLEvELALKEAETDEikilLEESRAQQKETLKSLLEQEtenlrtEISK 1106
Cdd:TIGR00618 237 QTQQSHAYLTQKREAQEEQLKKQ-QLLKQLRARIE-ELRAQEAVLEE----TQERINRARKAAPLAAHIK------AVTQ 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1107 LNQKIQDNNENYQVGLAEL-RTLMTIEKDQCISELISRHEEESNILKAELNKVTSLHNQA------FEIEKNLKEQIIEL 1179
Cdd:TIGR00618 305 IEQQAQRIHTELQSKMRSRaKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVAtsireiSCQQHTLTQHIHTL 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1180 QSKLDSELSALERQKDEKITQQEEKYEAIIQNLEKD--RQKLVSSQEQdrEQLIQKLNCEKDEAIQTALKEFKLeREVVE 1257
Cdd:TIGR00618 385 QQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRdlQGQLAHAKKQ--QELQQRYAELCAAAITCTAQCEKL-EKIHL 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1258 KELLEKVKHLENQIAKSPAIDSTRGDSSSLVAELQEKLQEEKAkfleQLEEQEKRKNEEMQNvrtSLIAEQQTNFNTVLT 1337
Cdd:TIGR00618 462 QESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPC----PLCGSCIHPNPARQD---IDNPGPLTRRMQRGE 534
|
410 420 430
....*....|....*....|....*....|....*..
gi 134304842 1338 REKMRKENIINDLSDKLKSTMQQQERDKDLIESLSED 1374
Cdd:TIGR00618 535 QTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQS 571
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1001-1367 |
7.18e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 54.35 E-value: 7.18e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1001 QEFEKVMTDHRVSLEELKKEnqqiINQIQESHaeiiqekEKQLQELKLKVSDLSDTRCKLEVElalKEAETDeikilLEE 1080
Cdd:pfam15921 74 EHIERVLEEYSHQVKDLQRR----LNESNELH-------EKQKFYLRQSVIDLQTKLQEMQME---RDAMAD-----IRR 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1081 SRAQQKETLKSLLEQETENLrtEISKLNQKIQDNNENYQVglAELRTLMTIEKD--QCISELISRHEEESNILKAELNKV 1158
Cdd:pfam15921 135 RESQSQEDLRNQLQNTVHEL--EAAKCLKEDMLEDSNTQI--EQLRKMMLSHEGvlQEIRSILVDFEEASGKKIYEHDSM 210
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1159 TSLHNqafeieKNLKEQIIELQSKLDSELSALErqkdEKITQQEEKYEAIiQNLEKDRQKLVSSQEQDR-EQLIQKLN-- 1235
Cdd:pfam15921 211 STMHF------RSLGSAISKILRELDTEISYLK----GRIFPVEDQLEAL-KSESQNKIELLLQQHQDRiEQLISEHEve 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1236 ----CEKDEAIQTALKEFKLEREVVEKELLEKVKHLENQIAkspaidstrgDSSSLVAELQEKLQEEKAKFLEQLEEQEK 1311
Cdd:pfam15921 280 itglTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLS----------DLESTVSQLRSELREAKRMYEDKIEELEK 349
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 134304842 1312 R---KNEEMQNVRTS--LIAEQQTNFNTVLtrekmrkENIINDLSDKLKSTMQQQERDKDL 1367
Cdd:pfam15921 350 QlvlANSELTEARTErdQFSQESGNLDDQL-------QKLLADLHKREKELSLEKEQNKRL 403
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1081-1377 |
7.38e-07 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 53.97 E-value: 7.38e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1081 SRAQQKETLKSLleqETENLRTEISKLNQKIQDNNEnyqvgLAELRTLMTIEKDQcISELISRHEEESNILKAELNKVtS 1160
Cdd:pfam17380 285 SERQQQEKFEKM---EQERLRQEKEEKAREVERRRK-----LEEAEKARQAEMDR-QAAIYAEQERMAMERERELERI-R 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1161 LHNQAFEIEKNLKEQI-IELQSKLDSELSALERQKDEKITQQEEKYEAIIQNLEKDRQKLVSSQEQDREQLIQKLNCEKD 1239
Cdd:pfam17380 355 QEERKRELERIRQEEIaMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQ 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1240 EAIQTALKEFKLEREVVEKELLEKVKHLEnQIAKSPAIDSTRGDSSSLVAELQEKLQEEKAKFLEQLEEQEKRKNEEMQN 1319
Cdd:pfam17380 435 REVRRLEEERAREMERVRLEEQERQQQVE-RLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEER 513
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 134304842 1320 VRTSLIAEQQTNFNTVLTREKMRKEniinDLSDKLKSTMQQQERDKDLIESLSEDRAR 1377
Cdd:pfam17380 514 KRKLLEKEMEERQKAIYEEERRREA----EEERRKQQEMEERRRIQEQMRKATEERSR 567
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
927-1113 |
1.42e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.46 E-value: 1.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 927 QNEKDQKLLEMENIMHSQNCEIKELKQSREIVLEDLKKLhvenDEKLQLLRAELQSLEQShLKELEDTlqvrhIQEFEKV 1006
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAAL----ERRIAALARRIRALEQE-LAALEAE-----LAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1007 MTDHRVSLEELKKENQQIINQIQES------------------------HAEIIQEKEKQLQELKLKVSDLSDTRCKLEV 1062
Cdd:COG4942 92 IAELRAELEAQKEELAELLRALYRLgrqpplalllspedfldavrrlqyLKYLAPARREQAEELRADLAELAALRAELEA 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 134304842 1063 ELALKEAETDEIKIL---LEESRAQQKETLKSlLEQETENLRTEISKLNQKIQD 1113
Cdd:COG4942 172 ERAELEALLAELEEEraaLEALKAERQKLLAR-LEKELAELAAELAELQQEAEE 224
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
854-1354 |
2.61e-06 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 52.75 E-value: 2.61e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 854 SLEITLKEKHQKelLSLKNEYEGKLDGLIKETEENENKIKKL-KGELVCLEEVLQNKDNEFALVKHEKEAVicLQNEKDQ 932
Cdd:TIGR01612 600 KLKLELKEKIKN--ISDKNEYIKKAIDLKKIIENNNAYIDELaKISPYQVPEHLKNKDKIYSTIKSELSKI--YEDDIDA 675
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 933 KLLEMENIMHSQNCEIKELKQSreivLEDLKKLHVENDEKLQLLRAELQSLEQSHLK----ELEDTLQVRHIQEFEKVMT 1008
Cdd:TIGR01612 676 LYNELSSIVKENAIDNTEDKAK----LDDLKSKIDKEYDKIQNMETATVELHLSNIEnkknELLDIIVEIKKHIHGEINK 751
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1009 DHRVSLEELKKENQQIINQIQESHAEiiqekEKQLQELKLKVSDL-------------SDTRCKLEVE--------LALK 1067
Cdd:TIGR01612 752 DLNKILEDFKNKEKELSNKINDYAKE-----KDELNKYKSKISEIknhyndqinidniKDEDAKQNYDkskeyiktISIK 826
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1068 EAET----DEIKILLEESRAQ----------QKETLKSLLEQETE---NLRTEISKLNQKIQDNNENYQVGL-------- 1122
Cdd:TIGR01612 827 EDEIfkiiNEMKFMKDDFLNKvdkfinfennCKEKIDSEHEQFAEltnKIKAEISDDKLNDYEKKFNDSKSLineinksi 906
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1123 -AELRTLMTIEK-DQCI------SELISRHEEESNILKAELNKVTSLHNQAFEIEKNLKEQiieLQSKLDSELSALERQ- 1193
Cdd:TIGR01612 907 eEEYQNINTLKKvDEYIkicentKESIEKFHNKQNILKEILNKNIDTIKESNLIEKSYKDK---FDNTLIDKINELDKAf 983
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1194 KDEKITQQEEKYEAIIQ-------NLEKDRQKLVSSQEQDREQ----LIQKL-NCEK-----DEAIQTALKEFKLErevV 1256
Cdd:TIGR01612 984 KDASLNDYEAKNNELIKyfndlkaNLGKNKENMLYHQFDEKEKatndIEQKIeDANKnipniEIAIHTSIYNIIDE---I 1060
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1257 EKELLEKVKHLENQIAKSPAIDSTRGDssslvaELQEKLQEekAKFLEQLEEQEKRKNEEMQNVRTSL-IAEQQTNFN-T 1334
Cdd:TIGR01612 1061 EKEIGKNIELLNKEILEEAEINITNFN------EIKEKLKH--YNFDDFGKEENIKYADEINKIKDDIkNLDQKIDHHiK 1132
|
570 580
....*....|....*....|
gi 134304842 1335 VLTREKMRKENIINDLSDKL 1354
Cdd:TIGR01612 1133 ALEEIKKKSENYIDEIKAQI 1152
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
776-1257 |
3.38e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 52.03 E-value: 3.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 776 RMQDTNVCGKEDFGDHtsLNVQLERCRVVAQDSHFSIQTIKEDL-CHFRTFVQ-----KEQCDFSNSLKCTAVEIRNIIE 849
Cdd:pfam05483 278 KLQDENLKELIEKKDH--LTKELEDIKMSLQRSMSTQKALEEDLqIATKTICQlteekEAQMEELNKAKAAHSFVVTEFE 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 850 KVKCSLEITLKEKHQK-----------------------ELLSLKNEYEGKLD----------GLIKETEENENKIKKLK 896
Cdd:pfam05483 356 ATTCSLEELLRTEQQRleknedqlkiitmelqkksseleEMTKFKNNKEVELEelkkilaedeKLLDEKKQFEKIAEELK 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 897 GELVCLEEVLQNKDNEFALVKHEKEAVICLQNEKDQKLLEMENIMHSQNCEIKELKQSREIVLEDLKKLHVENDEKLQLL 976
Cdd:pfam05483 436 GKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLEL 515
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 977 RAELQSLEQSHLKELEDTLQVRHIQEFEKVMTDHRVSL-EELKKENQQI---INQIQESHAEIIQEKEKQLQELKLKVSD 1052
Cdd:pfam05483 516 KKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVrEEFIQKGDEVkckLDKSEENARSIEYEVLKKEKQMKILENK 595
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1053 LSDTRCKLEVELALKEAETDEIKILLEESRAQQKETlkSLLEQETENLRTEISKLNQKIQDNNENYQvglaelrtlmtie 1132
Cdd:pfam05483 596 CNNLKKQIENKNKNIEELHQENKALKKKGSAENKQL--NAYEIKVNKLELELASAKQKFEEIIDNYQ------------- 660
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1133 kdqciSELISRHEEESNILKaELNKVTSLHNQAFEIEKNLKEQIielQSKLDSELSALERQKDE--KITQQEEKYEAIIQ 1210
Cdd:pfam05483 661 -----KEIEDKKISEEKLLE-EVEKAKAIADEAVKLQKEIDKRC---QHKIAEMVALMEKHKHQydKIIEERDSELGLYK 731
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 134304842 1211 NLEKDRQKLVSSQEQDREQLIQKL-NCEKDEAIQTALKEfKLEREVVE 1257
Cdd:pfam05483 732 NKEQEQSSAKAALEIELSNIKAELlSLKKQLEIEKEEKE-KLKMEAKE 778
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
951-1216 |
5.07e-06 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 51.08 E-value: 5.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 951 LKQSREIVLEDLKKL---HVEN------DEKLQLLRAELQSLEQsHLKELEDTLQVRHIqEFEKVMTDHRVSLEELKKEN 1021
Cdd:PRK05771 14 LKSYKDEVLEALHELgvvHIEDlkeelsNERLRKLRSLLTKLSE-ALDKLRSYLPKLNP-LREEKKKVSVKSLEELIKDV 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1022 QQIINQIQEShaeiIQEKEKQLQELKLKVSDLSDTRCKLE----VELALKEAETDE-IKILLEESRAQQKETLKSLLEQE 1096
Cdd:PRK05771 92 EEELEKIEKE----IKELEEEISELENEIKELEQEIERLEpwgnFDLDLSLLLGFKyVSVFVGTVPEDKLEELKLESDVE 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1097 TEnlrTEISKLNQK----IQDNNENYQVGLAELRTL----MTIEKDQCISELISRHEEESNILKAELNKvtslhnqafei 1168
Cdd:PRK05771 168 NV---EYISTDKGYvyvvVVVLKELSDEVEEELKKLgferLELEEEGTPSELIREIKEELEEIEKERES----------- 233
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 134304842 1169 eknLKEQIIELQSKLDSELSALErqkdEKITQQEEKYEAIIQNLEKDR 1216
Cdd:PRK05771 234 ---LLEELKELAKKYLEELLALY----EYLEIELERAEALSKFLKTDK 274
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
949-1316 |
6.20e-06 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 51.06 E-value: 6.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 949 KELKQSREIVLEDLKKLHVENDEKLQLLRAELQSLEQSHLKEL--EDTLQVRHIQEFEKVMTDHRVSLEELKKENQqiIN 1026
Cdd:PLN02939 49 KRGKNIAPKQRSSNSKLQSNTDENGQLENTSLRTVMELPQKSTssDDDHNRASMQRDEAIAAIDNEQQTNSKDGEQ--LS 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1027 QIQ-ESHAEIIQEKEKQLQEL-KLKVSDLSDtrckLEVELALKEAETDEIKIL---LEESRAQQKETLK-----SLLEQE 1096
Cdd:PLN02939 127 DFQlEDLVGMIQNAEKNILLLnQARLQALED----LEKILTEKEALQGKINILemrLSETDARIKLAAQekihvEILEEQ 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1097 TENLRTEISKLNQKIQDNNENYQVGLAELRTLMTIEKDqciselisrheeESNILKAELNKVTSLHNQAFEIEKN---LK 1173
Cdd:PLN02939 203 LEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKD------------DIQFLKAELIEVAETEERVFKLEKErslLD 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1174 EQIIELQSKL---DSELSALERQKDE--------------KITQQEEKYEAIIQNLEKDRQKLVSSQEQDREQLIQKLNC 1236
Cdd:PLN02939 271 ASLRELESKFivaQEDVSKLSPLQYDcwwekvenlqdlldRATNQVEKAALVLDQNQDLRDKVDKLEASLKEANVSKFSS 350
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1237 EKDEAIQTALKEFKLEREVVEKELLEKVKHLENQIakspaidstrgdssslvAELQEKLQEEKakfleqlEEQEKRKNEE 1316
Cdd:PLN02939 351 YKVELLQQKLKLLEERLQASDHEIHSYIQLYQESI-----------------KEFQDTLSKLK-------EESKKRSLEH 406
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
870-1116 |
6.65e-06 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 51.06 E-value: 6.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 870 LKNEYEGKLDGLIKETEENENKIKKLKgelvclEEVLQNKDNEFALVKHEKEAVICLQNEKDQKLLEMENIMHSQNcEIK 949
Cdd:PRK01156 470 IINHYNEKKSRLEEKIREIEIEVKDID------EKIVDLKKRKEYLESEEINKSINEYNKIESARADLEDIKIKIN-ELK 542
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 950 ELKQSREIVLEDLKKLHVE-----NDEKLQLLrAELQSLE-----------QSHLKELEDTLQvRHIQEFEKVMTDHRVS 1013
Cdd:PRK01156 543 DKHDKYEEIKNRYKSLKLEdldskRTSWLNAL-AVISLIDietnrsrsneiKKQLNDLESRLQ-EIEIGFPDDKSYIDKS 620
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1014 LEELKKENQQIINQIQEshaeiIQEKEKQLQELKLKVSDLSDTRCKL-EVELALKE--AETDEIKILLEESRAQQKETLK 1090
Cdd:PRK01156 621 IREIENEANNLNNKYNE-----IQENKILIEKLRGKIDNYKKQIAEIdSIIPDLKEitSRINDIEDNLKKSRKALDDAKA 695
|
250 260
....*....|....*....|....*...
gi 134304842 1091 SLLEQET--ENLRTEISKLNQKIQDNNE 1116
Cdd:PRK01156 696 NRARLEStiEILRTRINELSDRINDINE 723
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
838-1318 |
7.89e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 50.74 E-value: 7.89e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 838 KCTAVEIRNIIEKVKCSLEITL-KEKHQKELLSLKNEYEGKLDGLIKETEENENKIKKLKGELVCLEEVLQNKDNEFALV 916
Cdd:TIGR00618 371 SCQQHTLTQHIHTLQQQKTTLTqKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCT 450
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 917 KHEKEAVICLQNEKDQKLLEMENIMHSQNC---EIKELKQSREIVLEDLKKLHVENDEKLQLLRAELQSL-----EQSHL 988
Cdd:TIGR00618 451 AQCEKLEKIHLQESAQSLKEREQQLQTKEQihlQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIdnpgpLTRRM 530
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 989 KELEDTLQvRHIQEFEKV------MTDHRVSLEE----LKKENQQIINQIQESHAEI--IQEKEKQLQELKLKVSDLSDT 1056
Cdd:TIGR00618 531 QRGEQTYA-QLETSEEDVyhqltsERKQRASLKEqmqeIQQSFSILTQCDNRSKEDIpnLQNITVRLQDLTEKLSEAEDM 609
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1057 -RCKLEVELALKEAETDEIKILLEESRAQQKETLKSL-LEQETENL---RTEISKLNQKIQDNNENYQVGLAELRTLMTI 1131
Cdd:TIGR00618 610 lACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTaLHALQLTLtqeRVREHALSIRVLPKELLASRQLALQKMQSEK 689
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1132 EKDQCISELISRHEEesnILKAELNKVTSLHNQAFEIEKNLKEQIIELQSKLDS---ELSALERQKDEKITQQEEKYEAI 1208
Cdd:TIGR00618 690 EQLTYWKEMLAQCQT---LLRELETHIEEYDREFNEIENASSSLGSDLAAREDAlnqSLKELMHQARTVLKARTEAHFNN 766
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1209 IQNLEKDRQKLvsSQEQDREQLIQKLNcEKDEAIQTALKEfklerevVEKELLEKVKHLENqiAKSPAIDSTRGDSSSLV 1288
Cdd:TIGR00618 767 NEEVTAALQTG--AELSHLAAEIQFFN-RLREEDTHLLKT-------LEAEIGQEIPSDED--ILNLQCETLVQEEEQFL 834
|
490 500 510
....*....|....*....|....*....|..
gi 134304842 1289 AELQEK--LQEEKAKFLEQLEEQEKRKNEEMQ 1318
Cdd:TIGR00618 835 SRLEEKsaTLGEITHQLLKYEECSKQLAQLTQ 866
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
1004-1207 |
9.03e-06 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 50.41 E-value: 9.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1004 EKVMTDHRVSLEELKKENQQIINQIQEShaeiIQEKEKQLQELKLKVSDLSDTRCKLEVELALKEAETDEikilLEESRA 1083
Cdd:pfam05667 316 TSSPPTKVETEEELQQQREEELEELQEQ----LEDLESSIQELEKEIKKLESSIKQVEEELEELKEQNEE----LEKQYK 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1084 QQKETLKsLLEQETENlrteISKLNQKIQDNNENyqvgLAELRTLMtiEKDQciSELISRHEEesniLKAELNkvtslhN 1163
Cdd:pfam05667 388 VKKKTLD-LLPDAEEN----IAKLQALVDASAQR----LVELAGQW--EKHR--VPLIEEYRA----LKEAKS------N 444
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 134304842 1164 QAFEIEKNLkEQIIELQSKLdSELSALERQKDEKITQQEEKYEA 1207
Cdd:pfam05667 445 KEDESQRKL-EEIKELREKI-KEVAEEAKQKEELYKQLVAEYER 486
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
927-1110 |
1.32e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 49.44 E-value: 1.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 927 QNEKDQKLLEMENIMHSQNCEIKELKQSREIVLEDLKKLHVEND---EKLQLLRAELQSLEQShLKELEDTL--QVRHIQ 1001
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEalqAEIDKLQAEIAEAEAE-IEERREELgeRARALY 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1002 EFEKVMTDHRV-----SLEELKkENQQIINQIQESHAEIIQEKEKQLQELKLKVSDLSDTRckleVELALKEAETDEIKI 1076
Cdd:COG3883 97 RSGGSVSYLDVllgseSFSDFL-DRLSALSKIADADADLLEELKADKAELEAKKAELEAKL----AELEALKAELEAAKA 171
|
170 180 190
....*....|....*....|....*....|....
gi 134304842 1077 LLEESRAQQKETLKSLLEQETENLRTEISKLNQK 1110
Cdd:COG3883 172 ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAEL 205
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
849-1475 |
1.33e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.14 E-value: 1.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 849 EKVKCSLEITLKEKHQKELLSLKNEYEGKLDGLIKEteENENKIKKLKGelvcLEEVlqNKDNEFALvKHEKEAviclQN 928
Cdd:PTZ00121 1185 EEVRKAEELRKAEDARKAEAARKAEEERKAEEARKA--EDAKKAEAVKK----AEEA--KKDAEEAK-KAEEER----NN 1251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 929 EKDQKLLEMENIMHSQNCEIKELKQSREIvlEDLKKlhVENDEKLQLLRAELQSLEQSHLKELEDtlQVRHIQEFEKVMT 1008
Cdd:PTZ00121 1252 EEIRKFEEARMAHFARRQAAIKAEEARKA--DELKK--AEEKKKADEAKKAEEKKKADEAKKKAE--EAKKADEAKKKAE 1325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1009 DHRVSLEELKK--ENQQIINQIQESHAEIIQEKEKQLQElKLKVSDLSDTRCKLEVELALKEAE----TDEIKILLEESR 1082
Cdd:PTZ00121 1326 EAKKKADAAKKkaEEAKKAAEAAKAEAEAAADEAEAAEE-KAEAAEKKKEEAKKKADAAKKKAEekkkADEAKKKAEEDK 1404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1083 AQQKETLKSLLEQ----ETENLRTEISKLNQKIQDNNENYQVGLAELRTlmtiEKDQCISELISRHEEESNILKA----- 1153
Cdd:PTZ00121 1405 KKADELKKAAAAKkkadEAKKKAEEKKKADEAKKKAEEAKKADEAKKKA----EEAKKAEEAKKKAEEAKKADEAkkkae 1480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1154 ELNKVTSLHNQAFEIEKNLKE--QIIELQSKLDSELSALERQKDEKITQQEEKYEAiiQNLEKDRQKLVSSQEQDREQLI 1231
Cdd:PTZ00121 1481 EAKKADEAKKKAEEAKKKADEakKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKA--DEAKKAEEKKKADELKKAEELK 1558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1232 QKLNCEK-------DEAIQTALKEFKLEREVvEKELLEKVKHLENQIAKSPAIDSTRGDSSSLVAELQEKLQEEKAKF-- 1302
Cdd:PTZ00121 1559 KAEEKKKaeeakkaEEDKNMALRKAEEAKKA-EEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVeq 1637
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1303 LEQLEEQEKRKNEEMQNvrtsliAEQQtnfNTVLTREKMRKENIINDLSDKLKSTMQQQERDKDLIESLSEDRARLLEEK 1382
Cdd:PTZ00121 1638 LKKKEAEEKKKAEELKK------AEEE---NKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELK 1708
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1383 KKLEEEVSKlrsssfvpSPYVATAPELYGACAPELPGESDRSAvETADEGRVDSAMETSMMSVQENIHMLSEEKQRIMLL 1462
Cdd:PTZ00121 1709 KKEAEEKKK--------AEELKKAEEENKIKAEEAKKEAEEDK-KKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEA 1779
|
650
....*....|...
gi 134304842 1463 ERTLQLKEEENKR 1475
Cdd:PTZ00121 1780 VIEEELDEEDEKR 1792
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1184-1475 |
1.41e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 49.74 E-value: 1.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1184 DSELSALERQKD-EKITQQEEKYEaiiqnLEKDRQKLVSsQEQDREQLIQKLNCEKDEAIQTALKEFKLEREV--VEKEL 1260
Cdd:pfam17380 338 EQERMAMERERElERIRQEERKRE-----LERIRQEEIA-MEISRMRELERLQMERQQKNERVRQELEAARKVkiLEEER 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1261 LEKVKHLENQIAKspaidsTRGDSSSLVAELQEKLQEEKAKFLEQLEEQEKRKNEEMQNVRTSliAEQQTNFNTVLTREK 1340
Cdd:pfam17380 412 QRKIQQQKVEMEQ------IRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQ--EEERKRKKLELEKEK 483
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1341 mRKENIINDLSDKL--------KSTMQQQERDKDLIESLSEDRARlleekkkleeevsklrsssfvpspyvATAPElyga 1412
Cdd:pfam17380 484 -RDRKRAEEQRRKIlekeleerKQAMIEEERKRKLLEKEMEERQK--------------------------AIYEE---- 532
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 134304842 1413 capelpgESDRSAVEtadEGRVDSAMEtSMMSVQENIHMLSEEKQRIMLLER----TLQLKEEENKR 1475
Cdd:pfam17380 533 -------ERRREAEE---ERRKQQEME-ERRRIQEQMRKATEERSRLEAMEReremMRQIVESEKAR 588
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
947-1478 |
2.36e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.37 E-value: 2.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 947 EIKELKQSREIVLEDLKKLHVENDEKLQLLRAELQSLEQSHLKELEDTLQ---------VRHIQEFEKVMTDHRVSLEEL 1017
Cdd:PTZ00121 1080 DFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKaeearkaedARKAEEARKAEDAKRVEIARK 1159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1018 KKENQQIINQIQESHAEIIQEKEKQLQELK-LKVSDLSDTRCKLEVELALKEAETDEIKILLEESRAQQKETLKSLLEQE 1096
Cdd:PTZ00121 1160 AEDARKAEEARKAEDAKKAEAARKAEEVRKaEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDA 1239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1097 TENLRTEISKLNQKIQDNNENYQVGLAELRTLMTIEKDQCISELiSRHEEESNILKA----ELNKVTSLHNQAFEIEK-- 1170
Cdd:PTZ00121 1240 EEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADEL-KKAEEKKKADEAkkaeEKKKADEAKKKAEEAKKad 1318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1171 NLKEQIIELQSKLDS-ELSALERQKDEKITQQEEKYEAiiQNLEKDRQK-----LVSSQEQDREQLIQKLNCEKDEAIQT 1244
Cdd:PTZ00121 1319 EAKKKAEEAKKKADAaKKKAEEAKKAAEAAKAEAEAAA--DEAEAAEEKaeaaeKKKEEAKKKADAAKKKAEEKKKADEA 1396
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1245 ALK--EFKLEREVVEKELLEKVKHLEnqiAKSPAIDSTRGDSSSLVAELQEKLQEEKAKfleqleEQEKRKNEEMQNVrt 1322
Cdd:PTZ00121 1397 KKKaeEDKKKADELKKAAAAKKKADE---AKKKAEEKKKADEAKKKAEEAKKADEAKKK------AEEAKKAEEAKKK-- 1465
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1323 sliAEQQTNFNTVLTREKMRKEniindlSDKLKSTMQQQERDKDLIESLSEDRARLLEEKKKLeeevSKLRSSSFVPSPY 1402
Cdd:PTZ00121 1466 ---AEEAKKADEAKKKAEEAKK------ADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAE----EAKKADEAKKAEE 1532
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 134304842 1403 VATAPELYGAcapelpgESDRSAVETADEGRVDSAMEtsmmsVQENIHMLSEEKQRIMLLERTLQLKEEENKRLNQ 1478
Cdd:PTZ00121 1533 AKKADEAKKA-------EEKKKADELKKAEELKKAEE-----KKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEE 1596
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
861-1071 |
2.53e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.61 E-value: 2.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 861 EKHQKELLSLKNEYEGKLDGLIKETEENENKIKKLKGELVCLEEVLQNKDNEFALVKHEKEAvicLQNEKDQKLLEMENI 940
Cdd:COG4942 33 QQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE---LRAELEAQKEELAEL 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 941 -----MHSQNCEIKELKQSREIV-----LEDLKKLHVENDEKLQLLRAELQSLEQShLKELEDtlQVRHIQEFEKVMTDH 1010
Cdd:COG4942 110 lralyRLGRQPPLALLLSPEDFLdavrrLQYLKYLAPARREQAEELRADLAELAAL-RAELEA--ERAELEALLAELEEE 186
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 134304842 1011 RVSLEELKKENQQIINQIQEShaeiIQEKEKQLQELKLKVSDLSDTRCKLEVELALKEAET 1071
Cdd:COG4942 187 RAALEALKAERQKLLARLEKE----LAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
840-1099 |
3.01e-05 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 48.77 E-value: 3.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 840 TAVEIRNIIEKVKCSLEITLKEKHQKELLSLKNEYEGKLDGLIKETEENENKIKKLKGELVCLeEVLQNKDNEFALVKHE 919
Cdd:PRK05771 64 SYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERL-EPWGNFDLDLSLLLGF 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 920 KEAVI---CLQNEKDQKLLEMENIMHSQncEIKELKQSREIVLEDLKKLHVENDEKLQllRAELQSLEQSHLKELEDTLq 996
Cdd:PRK05771 143 KYVSVfvgTVPEDKLEELKLESDVENVE--YISTDKGYVYVVVVVLKELSDEVEEELK--KLGFERLELEEEGTPSELI- 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 997 vRHIQEfekvmtdhrvSLEELKKENQQIINQiqeshaeiIQEKEKQLQELKLKVSDLSDTRcKLEVELALKEAETDEIKI 1076
Cdd:PRK05771 218 -REIKE----------ELEEIEKERESLLEE--------LKELAKKYLEELLALYEYLEIE-LERAEALSKFLKTDKTFA 277
|
250 260
....*....|....*....|....*.
gi 134304842 1077 L---LEESRAqqkETLKSLLEQETEN 1099
Cdd:PRK05771 278 IegwVPEDRV---KKLKELIDKATGG 300
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
864-1375 |
3.11e-05 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 48.92 E-value: 3.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 864 QKELLSLKNEYEGKLdglIKETEENENKIKKLKgelvcleEVLQNKDNEfalvkhekeavicLQNEKDQKLLEMENIMHS 943
Cdd:COG5022 905 ESEIIELKKSLSSDL---IENLEFKTELIARLK-------KLLNNIDLE-------------EGPSIEYVKLPELNKLHE 961
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 944 QNCEIKELKQSREIVLEDLKKLHVE---NDEKLQLLRAELQSLE------QSHLKELEDTLQ--VRHIQEFEKVMTDH-- 1010
Cdd:COG5022 962 VESKLKETSEEYEDLLKKSTILVREgnkANSELKNFKKELAELSkqygalQESTKQLKELPVevAELQSASKIISSESte 1041
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1011 ---RVSLEELKKENQQIINQIQESHAEIIQEKEKQLQELKLKVSDLSdtrckleVELALKEAETDEIKILLEESRAQQKE 1087
Cdd:COG5022 1042 lsiLKPLQKLKGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLES-------TENLLKTINVKDLEVTNRNLVKPANV 1114
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1088 TLKSLLEQETENLRTEISKLNQKIQDNNENYQVGLAELRTLMTIEK----------------------------DQCISE 1139
Cdd:COG5022 1115 LQFIVAQMIKLNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGLFweanlealpspppfaalsekrlyqsalyDEKSKL 1194
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1140 LISRHEEESNILKAELNKVTSLHNQAFEIEKNLKEQIieLQSKLDSELSALERQKDEKITQQEEKYEAIIQNLEKDRQKL 1219
Cdd:COG5022 1195 SSSEVNDLKNELIALFSKIFSGWPRGDKLKKLISEGW--VPTEYSTSLKGFNNLNKKFDTPASMSNEKLLSLLNSIDNLL 1272
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1220 VSSQEQDRE------QLIQKLNCEKDEAIqtALKEFKLEREVVE------KELLEKVKHLENQIAKS------PAIDSTR 1281
Cdd:COG5022 1273 SSYKLEEEVlpatinSLLQYINVGLFNAL--RTKASSLRWKSATevnynsEELDDWCREFEISDVDEeleeliQAVKVLQ 1350
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1282 GDSSSL--VAELQEKLQEEKAKFLEQLEEQEKR-------KNEEMQNVRTSLIAEQQTNFNTVLTREKMRKENIINDLSD 1352
Cdd:COG5022 1351 LLKDDLnkLDELLDACYSLNPAEIQNLKSRYDPadkennlPKEILKKIEALLIKQELQLSLEGKDETEVHLSEIFSEEKS 1430
|
570 580
....*....|....*....|....*.
gi 134304842 1353 KL---KSTMQQQERDKDLIESLSEDR 1375
Cdd:COG5022 1431 LIsldRNSIYKEEVLSSLSALLTKEK 1456
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
888-1316 |
3.43e-05 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 48.89 E-value: 3.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 888 NENKIKKLKgelvCLEEVLQnkdnEFALVKHEkeaviCLQNEKDQKLLEMEN-----------IMHSQNCEIKELKQSRE 956
Cdd:PTZ00108 968 ENGKIKKYS----DALDILK----EFYLVRLD-----LYKKRKEYLLGKLERelarlsnkvrfIKHVINGELVITNAKKK 1034
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 957 IVLEDLKKLHVENDEKLQLLRAELQSLEQSHLKELEDTLQVRHIQEFEKVMTDH----RVSLEELKKENqqiINQIQESH 1032
Cdd:PTZ00108 1035 DLVKELKKLGYVRFKDIIKKKSEKITAEEEEGAEEDDEADDEDDEEELGAAVSYdyllSMPIWSLTKEK---VEKLNAEL 1111
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1033 AeiiqEKEKQLQELK------LKVSDLSdtrcklEVELALKEAETDEIKILLEESRAQQKETLKSLLEQETEnLRTEISK 1106
Cdd:PTZ00108 1112 E----KKEKELEKLKnttpkdMWLEDLD------KFEEALEEQEEVEEKEIAKEQRLKSKTKGKASKLRKPK-LKKKEKK 1180
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1107 LNQKIQDNnenyqvglaeLRTLMTIEKDQCISELISRHEEESNILKAELNKVTSLHNQAFEIEKNLKEQIIELQSKLD-- 1184
Cdd:PTZ00108 1181 KKKSSADK----------SKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNns 1250
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1185 SELSALERQKDEKITQQEEKYEAIIQNLEKDR-QKLVSSQEQDREQLIQ-------KLNCEKDEAIQTALKEFKLERevv 1256
Cdd:PTZ00108 1251 SKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQySPPPPSKRPDGESNGGskpssptKKKVKKRLEGSLAALKKKKKS--- 1327
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1257 EKELLEKVKhLENQIAKSPAIDSTRGDSSSLVAELQEKLQEEKAKFLEQLEEQEKRKNEE 1316
Cdd:PTZ00108 1328 EKKTARKKK-SKTRVKQASASQSSRLLRRPRKKKSDSSSEDDDDSEVDDSEDEDDEDDED 1386
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
948-1232 |
3.56e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 48.80 E-value: 3.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 948 IKELKQSREIVLEDLKKLHvENDEKLQLLRAELQSLEQSHL---------KELEDTLQ-----VRHIQEFEKVMTDHRVS 1013
Cdd:PRK04863 788 IEQLRAEREELAERYATLS-FDVQKLQRLHQAFSRFIGSHLavafeadpeAELRQLNRrrvelERALADHESQEQQQRSQ 866
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1014 LEELKkENQQIINQIQ--------ESHAEIIQEKEKQLQEL---KLKVSDLSDTRCKLEVELALKEAETDEIKIL---LE 1079
Cdd:PRK04863 867 LEQAK-EGLSALNRLLprlnlladETLADRVEEIREQLDEAeeaKRFVQQHGNALAQLEPIVSVLQSDPEQFEQLkqdYQ 945
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1080 ESRAQQKET------LKSLLE-------QETENLRTEISKLNQKIQDNNENYQVGLAELRTLMT------IEKDQCISEL 1140
Cdd:PRK04863 946 QAQQTQRDAkqqafaLTEVVQrrahfsyEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRqaqaqlAQYNQVLASL 1025
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1141 ISRHEEESNILKAELNkvtSLHNQAFEIEKNLKEQIIELQSKLDSELSAlERQKDEKITQQEEKYEAIIQNLEKDRQKLV 1220
Cdd:PRK04863 1026 KSSYDAKRQMLQELKQ---ELQDLGVPADSGAEERARARRDELHARLSA-NRSRRNQLEKQLTFCEAEMDNLTKKLRKLE 1101
|
330
....*....|..
gi 134304842 1221 SSQEQDREQLIQ 1232
Cdd:PRK04863 1102 RDYHEMREQVVN 1113
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
929-1375 |
5.42e-05 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 48.15 E-value: 5.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 929 EKDQKLLEMENIMHSQNCEIKELKQSREivledlkKLHVENDEKLQLLRAELQSLEQSH---LKELEDTLQVRHIQEFEK 1005
Cdd:COG5022 807 GSRKEYRSYLACIIKLQKTIKREKKLRE-------TEEVEFSLKAEVLIQKFGRSLKAKkrfSLLKKETIYLQSAQRVEL 879
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1006 VMTdhrvSLEELKKENQQIinqiqESHAEIIQEKEKQLQELKLKVSdlSDTRCKLEvelaLKEAETDEIKILLEESRAQQ 1085
Cdd:COG5022 880 AER----QLQELKIDVKSI-----SSLKLVNLELESEIIELKKSLS--SDLIENLE----FKTELIARLKKLLNNIDLEE 944
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1086 KETLKSLLEQETENLRTEISKLNQKIQD-NNENYQvglaelrtlMTIEKDQCISElisrhEEESNILKAELNKVTSLHNQ 1164
Cdd:COG5022 945 GPSIEYVKLPELNKLHEVESKLKETSEEyEDLLKK---------STILVREGNKA-----NSELKNFKKELAELSKQYGA 1010
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1165 AFEIEKNLKEQIIELQSKldselsalerQKDEKITQQEEKYEAIIQNLEKDRQKLVSSQEQDREQLIQKLNCEKDEAIQT 1244
Cdd:COG5022 1011 LQESTKQLKELPVEVAEL----------QSASKIISSESTELSILKPLQKLKGLLLLENNQLQARYKALKLRRENSLLDD 1080
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1245 ALKEFKLEREVVEKELLEKVKHLENQIAKSPA--IDSTRGDSSSLVAELQ-EKLQEEKAKFLEQLEEQEKRKNEEMQNVR 1321
Cdd:COG5022 1081 KQLYQLESTENLLKTINVKDLEVTNRNLVKPAnvLQFIVAQMIKLNLLQEiSKFLSQLVNTLEPVFQKLSVLQLELDGLF 1160
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 134304842 1322 TSLIAEQQTNFNT-VLTREKMRKENIINDLSDKLKSTmQQQERDKDLIESLSEDR 1375
Cdd:COG5022 1161 WEANLEALPSPPPfAALSEKRLYQSALYDEKSKLSSS-EVNDLKNELIALFSKIF 1214
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
874-1374 |
5.76e-05 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 47.97 E-value: 5.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 874 YEGKLDGLIKETEENENKIKKLKGELVCLEEVLQNKDNEFALVKHEKEAVICLQNEKDQKLLEMENI------MHSQNCE 947
Cdd:PRK01156 195 SNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAesdlsmELEKNNY 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 948 IKELKQ------------SREIVLE--DLKKLHVENDEKLQLLRAELQSLEQSHlKELEDtLQVRHIQ--EFEKVMTDHR 1011
Cdd:PRK01156 275 YKELEErhmkiindpvykNRNYINDyfKYKNDIENKKQILSNIDAEINKYHAII-KKLSV-LQKDYNDyiKKKSRYDDLN 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1012 VSLEELKKENQQIINQIQEshaeiIQEKEKQLQELKLKVSDLSDTRCKLeveLALKEAETDEIKILLEESRAQQKEtlks 1091
Cdd:PRK01156 353 NQILELEGYEMDYNSYLKS-----IESLKKKIEEYSKNIERMSAFISEI---LKIQEIDPDAIKKELNEINVKLQD---- 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1092 lleqetenLRTEISKLNQKIQDNNENyqvgLAELRTLMTIEKDQCISELISRH--EEESN-ILKAELNKVTSLHNQAFEI 1168
Cdd:PRK01156 421 --------ISSKVSSLNQRIRALREN----LDELSRNMEMLNGQSVCPVCGTTlgEEKSNhIINHYNEKKSRLEEKIREI 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1169 EKNLKEqIIELQSKLDSELSALERQKDEKITQQEEKYEAIIQNLEKDRQKL--VSSQEQDREQLIQKLNCEKDEAIQTAL 1246
Cdd:PRK01156 489 EIEVKD-IDEKIVDLKKRKEYLESEEINKSINEYNKIESARADLEDIKIKIneLKDKHDKYEEIKNRYKSLKLEDLDSKR 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1247 KEF--------KLEREVVEKELLEKVKHLENQIAKSPAIDSTRGDSSSLVAELQEKLQEEKAKFLEQLEEQE--KRKNEE 1316
Cdd:PRK01156 568 TSWlnalavisLIDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQenKILIEK 647
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 134304842 1317 MQNV------RTSLIAEQQTNFNTVlTREKMRKENIINDLSDKLKSTMQQQERDKDLIESLSED 1374
Cdd:PRK01156 648 LRGKidnykkQIAEIDSIIPDLKEI-TSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTR 710
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1007-1197 |
6.49e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 46.07 E-value: 6.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1007 MTDHRVSLEELKKENQQI--INQIQESHAEIIQEKEKQLQELKLKVSDLSDTRCKLEVELALKEAETDEIKILLEESRAQ 1084
Cdd:COG1579 2 MPEDLRALLDLQELDSELdrLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1085 QKETLKS----LLEQETENLRTEISKLNQKIQDNN---ENYQVGLAELRTLMTIEKDQcISELISRHEEESNILKAELNK 1157
Cdd:COG1579 82 LGNVRNNkeyeALQKEIESLKRRISDLEDEILELMeriEELEEELAELEAELAELEAE-LEEKKAELDEELAELEAELEE 160
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 134304842 1158 vtslhnqafeieknLKEQIIELQSKLDSELSAL-ERQKDEK 1197
Cdd:COG1579 161 --------------LEAEREELAAKIPPELLALyERIRKRK 187
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1093-1327 |
6.99e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 6.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1093 LEQETENLRTEISKLnQKIQDNNENYQVGLAELRTLmtiekDQCISEL-ISRHEEESNILKAELNKVTSLHNQAFEIEKN 1171
Cdd:COG4913 240 AHEALEDAREQIELL-EPIRELAERYAAARERLAEL-----EYLRAALrLWFAQRRLELLEAELEELRAELARLEAELER 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1172 LKEQIIELQSKLDselsALERQKDEKITQQEEKYEAIIQNLEKDRQKlvssQEQDREQLiqklncekdeaiQTALKEFKL 1251
Cdd:COG4913 314 LEARLDALREELD----ELEAQIRGNGGDRLEQLEREIERLERELEE----RERRRARL------------EALLAALGL 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1252 EREVVEKELLEKVKHLENQIAKSPAI-DSTRGDSSSLVAELQEkLQEEKAKFLEQLEEQEKRKN---EEMQNVRTSLIAE 1327
Cdd:COG4913 374 PLPASAEEFAALRAEAAALLEALEEElEALEEALAEAEAALRD-LRRELRELEAEIASLERRKSnipARLLALRDALAEA 452
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1015-1324 |
1.33e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 46.76 E-value: 1.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1015 EELKKENQQIINQIQESHaEIIQEKEKQLQELKLKVSDLSdtrckLEVELA---LKEAETDEIKILLE---ESRA--QQK 1086
Cdd:pfam12128 600 EELRERLDKAEEALQSAR-EKQAAAEEQLVQANGELEKAS-----REETFArtaLKNARLDLRRLFDEkqsEKDKknKAL 673
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1087 ETLKSLLEQETENLRTEISKLNQKIQDNNENYQVGLAELRTlmtiEKDQCISELISRHEEESNILKAELNKVtslhnqaf 1166
Cdd:pfam12128 674 AERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREART----EKQAYWQVVEGALDAQLALLKAAIAAR-------- 741
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1167 eiEKNLKEQIIELQSKLDSELSAL--ERQKDEKITQQEEKYEAIIQNLEKDRQKLVS---------SQEQDR-------- 1227
Cdd:pfam12128 742 --RSGAKAELKALETWYKRDLASLgvDPDVIAKLKREIRTLERKIERIAVRRQEVLRyfdwyqetwLQRRPRlatqlsni 819
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1228 EQLIQKLNCE---KDEAIQTALKEFKLEREVVEK------ELLEKVKHLENQIAKSpAIDSTRGDSSSLVAELQEKLQEE 1298
Cdd:pfam12128 820 ERAISELQQQlarLIADTKLRRAKLEMERKASEKqqvrlsENLRGLRCEMSKLATL-KEDANSEQAQGSIGERLAQLEDL 898
|
330 340
....*....|....*....|....*.
gi 134304842 1299 KAKfLEQLEEQEKRKNEEMQNVRTSL 1324
Cdd:pfam12128 899 KLK-RDYLSESVKKYVEHFKNVIADH 923
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
956-1366 |
1.39e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 46.74 E-value: 1.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 956 EIVLEDLKKLHVENDEKLQLLRAELQSLEQSHLKELEDTLQVRHIQEFEKVMTDHRVSLEELKKENQQII------NQIQ 1029
Cdd:pfam10174 143 ELRIETQKQTLGARDESIKKLLEMLQSKGLPKKSGEEDWERTRRIAEAEMQLGHLEVLLDQKEKENIHLReelhrrNQLQ 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1030 ESHAE------IIQEKEKQLQELKLKVSDLSDTRCKLEVELALKEAETDEIKILLEESRAQQK------ETLKSLL---E 1094
Cdd:pfam10174 223 PDPAKtkalqtVIEMKDTKISSLERNIRDLEDEVQMLKTNGLLHTEDREEEIKQMEVYKSHSKfmknkiDQLKQELskkE 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1095 QETENLRTEISKLNQKIQDNNENYQVglaelrtlmtiekdqcISELISRHEEESNILKAElnkVTSLHNQAFEIEKNLKE 1174
Cdd:pfam10174 303 SELLALQTKLETLTNQNSDCKQHIEV----------------LKESLTAKEQRAAILQTE---VDALRLRLEEKESFLNK 363
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1175 ---QIIELQ---SKLDSELSALERQ---KDEKITQQEEKYEAIIQNLeKDRQKLVSSQeQDREQLIQKLNCEKDEAIQT- 1244
Cdd:pfam10174 364 ktkQLQDLTeekSTLAGEIRDLKDMldvKERKINVLQKKIENLQEQL-RDKDKQLAGL-KERVKSLQTDSSNTDTALTTl 441
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1245 --ALKE-------FKLEREVVEKELLEKVKHL--ENQIAKSpAIDSTRGD---SSSLVAELQEKLQE------EKAKFLE 1304
Cdd:pfam10174 442 eeALSEkeriierLKEQREREDRERLEELESLkkENKDLKE-KVSALQPElteKESSLIDLKEHASSlassglKKDSKLK 520
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 134304842 1305 QLEEQEKRKNEEMQNVRTSLIAEQQTNFNtvltrekmrkENIINDLSDKLKSTMQQQERDKD 1366
Cdd:pfam10174 521 SLEIAVEQKKEECSKLENQLKKAHNAEEA----------VRTNPEINDRIRLLEQEVARYKE 572
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
1022-1369 |
1.43e-04 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 46.49 E-value: 1.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1022 QQIINQIQESHAEIIQEKEKQLQELKLKVSD--LSDTRCKLEVELALKEAETDEIKIlleESRAQQKETLKSLLEQETEN 1099
Cdd:COG5185 189 LKGISELKKAEPSGTVNSIKESETGNLGSEStlLEKAKEIINIEEALKGFQDPESEL---EDLAQTSDKLEKLVEQNTDL 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1100 LRTEISKLNQKIQDNNENYQVGLAELRTLmtiekdqciSELISRHEEESNILKAELNKVTSLhnQAFEIEKNLKEQIIEL 1179
Cdd:COG5185 266 RLEKLGENAESSKRLNENANNLIKQFENT---------KEKIAEYTKSIDIKKATESLEEQL--AAAEAEQELEESKRET 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1180 QSKLDselsalerQKDEKITQQEEKYEAIIQNLEKDRQKLVSSQEQdrEQLIQKLNcekdeaiqtalkEFKLEREVVEKE 1259
Cdd:COG5185 335 ETGIQ--------NLTAEIEQGQESLTENLEAIKEEIENIVGEVEL--SKSSEELD------------SFKDTIESTKES 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1260 LLEKVKHLENQIAK-SPAIDSTRGDSSSLVAELQEKLQ------EEKAKFLEQLEEQEKRKNEEMQNVRTSLIAEQQTNF 1332
Cdd:COG5185 393 LDEIPQNQRGYAQEiLATLEDTLKAADRQIEELQRQIEqatssnEEVSKLLNELISELNKVMREADEESQSRLEEAYDEI 472
|
330 340 350
....*....|....*....|....*....|....*..
gi 134304842 1333 NTVLTREKMRKENIINDLSDKLKSTMQQQERDKDLIE 1369
Cdd:COG5185 473 NRSVRSKKEDLNEELTQIESRVSTLKATLEKLRAKLE 509
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
961-1348 |
1.61e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 46.58 E-value: 1.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 961 DLKKLHVENDEKLQLLRAELQsleqsHLKELEDTLQVRHIQEFEKVMTDHRVSLE---ELKKEN-QQIINQIQESHaEII 1036
Cdd:TIGR01612 480 DIKKDIDENSKQDNTVKLILM-----RMKDFKDIIDFMELYKPDEVPSKNIIGFDidqNIKAKLyKEIEAGLKESY-ELA 553
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1037 QEKEKQLQELKLKVSDLSDTRCKLEVE---LALKEAETDEIKILLEESRAQQKETLKSLLEQeTENLRTEISKlnQKIQD 1113
Cdd:TIGR01612 554 KNWKKLIHEIKKELEEENEDSIHLEKEikdLFDKYLEIDDEIIYINKLKLELKEKIKNISDK-NEYIKKAIDL--KKIIE 630
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1114 NNENYQVGLAELRTLMTIE----KDQCISELISrheEESNILKAELNKvtsLHNQAFEIEKNLKEQIIELQSKLDSELSA 1189
Cdd:TIGR01612 631 NNNAYIDELAKISPYQVPEhlknKDKIYSTIKS---ELSKIYEDDIDA---LYNELSSIVKENAIDNTEDKAKLDDLKSK 704
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1190 LERQKDEKITQQEEKYEAIIQNLEKDRQKLVSSQEQDREQLIQKLNCEkdeaIQTALKEFKlerevvekellEKVKHLEN 1269
Cdd:TIGR01612 705 IDKEYDKIQNMETATVELHLSNIENKKNELLDIIVEIKKHIHGEINKD----LNKILEDFK-----------NKEKELSN 769
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 134304842 1270 QIAKSPAIDSTRGDSSSLVAELQEKLQEEKAkfLEQLEEQEKRKNEEMQNVRTSLIAEQQTNFNTVLTREKMRKENIIN 1348
Cdd:TIGR01612 770 KINDYAKEKDELNKYKSKISEIKNHYNDQIN--IDNIKDEDAKQNYDKSKEYIKTISIKEDEIFKIINEMKFMKDDFLN 846
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
928-1263 |
1.64e-04 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 46.37 E-value: 1.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 928 NEKDQKLLEMENIMHSQNCEIKELKQS----REIVLEDLkklhvendEKLQLLRAELqsLEQSH-----LKELEDTLQ-- 996
Cdd:PRK04778 108 NEIESLLDLIEEDIEQILEELQELLESeeknREEVEQLK--------DLYRELRKSL--LANRFsfgpaLDELEKQLEnl 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 997 VRHIQEFEKVMT--DH---RVSLEELKKEN---QQIINQIQESHAEIIQEKEKQLQELKLKVSDLSDTRCKLevelalke 1068
Cdd:PRK04778 178 EEEFSQFVELTEsgDYveaREILDQLEEELaalEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHL-------- 249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1069 aetDEIKIL--LEESRAQQKETLKSLLEQETENLRTEISKLNQKIqdnNENYQVGLAELRTLMTIEKDQ-CISELISRHE 1145
Cdd:PRK04778 250 ---DHLDIEkeIQDLKEQIDENLALLEELDLDEAEEKNEEIQERI---DQLYDILEREVKARKYVEKNSdTLPDFLEHAK 323
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1146 EESNILKAELNKVtslhNQAFEieknLKEQIIELQSKLDSELSALERQKD---EKITQQEEKYEAIIQNLEKDRQKLVSS 1222
Cdd:PRK04778 324 EQNKELKEEIDRV----KQSYT----LNESELESVRQLEKQLESLEKQYDeitERIAEQEIAYSELQEELEEILKQLEEI 395
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 134304842 1223 QEQdREQLIQKL-NCEKDEAI-QTALKEFKLEREVVeKELLEK 1263
Cdd:PRK04778 396 EKE-QEKLSEMLqGLRKDELEaREKLERYRNKLHEI-KRYLEK 436
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
947-1234 |
1.90e-04 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 45.29 E-value: 1.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 947 EIKELKQSREIVLEDLKKLhvenDEKLQLLRAELQSLeqshlKELEDTLQVRHIQEFEKvmtdhrvsLEELKKENQQIIN 1026
Cdd:COG1340 9 SLEELEEKIEELREEIEEL----KEKRDELNEELKEL-----AEKRDELNAQVKELREE--------AQELREKRDELNE 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1027 QIQEsHAEIIQEKEKQLQELKLKVSDLSdtrcKLEVELALKEAETDEIKILLEESRAQQkETLKSLLEQETEnLRTEISK 1106
Cdd:COG1340 72 KVKE-LKEERDELNEKLNELREELDELR----KELAELNKAGGSIDKLRKEIERLEWRQ-QTEVLSPEEEKE-LVEKIKE 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1107 LNQKIQ------DNNENYQVGLAELRTLMTIEKDqcISELISRHEEESNILKAELnkvTSLHNQAFEIEKN---LKEQII 1177
Cdd:COG1340 145 LEKELEkakkalEKNEKLKELRAELKELRKEAEE--IHKKIKELAEEAQELHEEM---IELYKEADELRKEadeLHKEIV 219
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 134304842 1178 ELQSKLDsELSALERQKDEKITQQEEKYEAIIQNLEKD-RQKLVSSQEQDREQLIQKL 1234
Cdd:COG1340 220 EAQEKAD-ELHEEIIELQKELRELRKELKKLRKKQRALkREKEKEELEEKAEEIFEKL 276
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
1019-1315 |
1.95e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 45.66 E-value: 1.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1019 KENQQIINQIQESHAEIIQEKEKQLQELKLKVSDLSDTRCKLEVELALKEAETDEIKILLEESRAQQKETLKSL--LEQE 1096
Cdd:COG4372 9 GKARLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELeeLNEQ 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1097 TENLRTEISKLNQKIQDNNENYQVGLAELRTLmtiekdqciselisrhEEESNILKAELNKVTSLHNQAFEIEKNLKEQI 1176
Cdd:COG4372 89 LQAAQAELAQAQEELESLQEEAEELQEELEEL----------------QKERQDLEQQRKQLEAQIAELQSEIAEREEEL 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1177 IELQSKLDSELSALERQKDEKITQQEEKYEAIIQNLEKDRQKLVSSQEQDREQLIQKLNCEKDEAIQTALKEFKLEREVV 1256
Cdd:COG4372 153 KELEEQLESLQEELAALEQELQALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLG 232
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 134304842 1257 EKELLEKVKHLENQIAKSPAIDSTRGDSSSLVAELQEKLQEEKAKFLEQLEEQEKRKNE 1315
Cdd:COG4372 233 LALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEA 291
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
953-1215 |
2.28e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 45.78 E-value: 2.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 953 QSREIVlEDLKKLHVendeklqllRAELQSLEQSHLKELED-----TLQVRHIQEFEKVMTDHRVSLEELKKENQQIINQ 1027
Cdd:PHA02562 151 ARRKLV-EDLLDISV---------LSEMDKLNKDKIRELNQqiqtlDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQN 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1028 IQESHAEIIQEKEKQLQELKLKVSDLsdTRCKLEVELALKEAETDEIKIlleesrAQQKETLKSLLEQETEN-------- 1099
Cdd:PHA02562 221 KYDELVEEAKTIKAEIEELTDELLNL--VMDIEDPSAALNKLNTAAAKI------KSKIEQFQKVIKMYEKGgvcptctq 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1100 -LRTEISKLnQKIQDNNENYQVGLAELRTlmTIEKDQCISELISRHEEESNILKAELNK----VTSLHNQAFEIEKnlke 1174
Cdd:PHA02562 293 qISEGPDRI-TKIKDKLKELQHSLEKLDT--AIDELEEIMDEFNEQSKKLLELKNKISTnkqsLITLVDKAKKVKA---- 365
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 134304842 1175 QIIELQSKL---DSELSALERQKDEKITQQ----EEKYE-AIIQNLEKD 1215
Cdd:PHA02562 366 AIEELQAEFvdnAEELAKLQDELDKIVKTKselvKEKYHrGIVTDLLKD 414
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
975-1333 |
2.35e-04 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 45.90 E-value: 2.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 975 LLRAELQSLEQSHLKELEDTLQVRHIQEFEKVMTDHRVSLEELK------------KENQQIINQIQESHAE---IIQEK 1039
Cdd:pfam09731 47 VLYALGEDPPLAPKPKTFRPLQPSVVSAVTGESKEPKEEKKQVKiprqsgvssevaEEEKEATKDAAEAKAQlpkSEQEK 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1040 EKQLQELKLKVSDLSDtrcklEVELALKEAETDEIKILLEE-------------SRAQQKETLKSLLEQETENLRTEISK 1106
Cdd:pfam09731 127 EKALEEVLKEAISKAE-----SATAVAKEAKDDAIQAVKAHtdslkeasdtaeiSREKATDSALQKAEALAEKLKEVINL 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1107 LNQ-----------KIQDNNENYQVGLAELRTLMTIEKDQ--CISELISRHEEESNILKAELNKVTSlhnqafEIEKNLK 1173
Cdd:pfam09731 202 AKQseeeaapplldAAPETPPKLPEHLDNVEEKVEKAQSLakLVDQYKELVASERIVFQQELVSIFP------DIIPVLK 275
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1174 EQIIELQSKLDS-------ELSALERQKDEKITQQEEKYEAIIQNLEKDrqklvssQEQDREQLIQKLNCEKDEAIQTAL 1246
Cdd:pfam09731 276 EDNLLSNDDLNSliahahrEIDQLSKKLAELKKREEKHIERALEKQKEE-------LDKLAEELSARLEEVRAADEAQLR 348
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1247 KEFKLEREVVEKELLEKvkhLENQIAKSPAIDSTRgdsssLVAELQEKLQEEKAKFLEQLEEqekrKNEEMQNVRTSLIA 1326
Cdd:pfam09731 349 LEFEREREEIRESYEEK---LRTELERQAEAHEEH-----LKDVLVEQEIELQREFLQDIKE----KVEEERAGRLLKLN 416
|
....*..
gi 134304842 1327 EQQTNFN 1333
Cdd:pfam09731 417 ELLANLK 423
|
|
| SPEC |
cd00176 |
Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members ... |
886-1059 |
2.35e-04 |
|
Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Pssm-ID: 238103 [Multi-domain] Cd Length: 213 Bit Score: 44.36 E-value: 2.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 886 EENENKIKKLKGelvcLEEVLQNKDNEFALVKHEKEAVICLQNEKDQKLLEMENIMHSQNCEIKELKQSREIVLEDLKKL 965
Cdd:cd00176 33 ESVEALLKKHEA----LEAELAAHEERVEALNELGEQLIEEGHPDAEEIQERLEELNQRWEELRELAEERRQRLEEALDL 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 966 HVENDEKLQLL----RAELQSLEQSHLKELED-TLQVRHIQEFEKVMTDHRVSLEELKKENQQIINQIQESHAEIIQEKE 1040
Cdd:cd00176 109 QQFFRDADDLEqwleEKEAALASEDLGKDLESvEELLKKHKELEEELEAHEPRLKSLNELAEELLEEGHPDADEEIEEKL 188
|
170
....*....|....*....
gi 134304842 1041 KQLQELKLKVSDLSDTRCK 1059
Cdd:cd00176 189 EELNERWEELLELAEERQK 207
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1161-1324 |
2.36e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 44.53 E-value: 2.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1161 LHNQAFEIEKNLKEQIIELQsKLDSELSALERQKdEKITQQEEKYEAIIQNLEKDRQKLVSSQEQDREQLIQKLNcEKD- 1239
Cdd:COG1579 15 LDSELDRLEHRLKELPAELA-ELEDELAALEARL-EAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRN-NKEy 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1240 EAIQTALKEFKLEREVVEKELLEKVKHLEnqiAKSPAIDSTRGDSSSLVAELQEKlQEEKAKFLEQLEEQEKRKNEEMQN 1319
Cdd:COG1579 92 EALQKEIESLKRRISDLEDEILELMERIE---ELEEELAELEAELAELEAELEEK-KAELDEELAELEAELEELEAEREE 167
|
....*
gi 134304842 1320 VRTSL 1324
Cdd:COG1579 168 LAAKI 172
|
|
| HlpA |
COG2825 |
Periplasmic chaperone for outer membrane proteins, Skp family [Cell wall/membrane/envelope ... |
1182-1274 |
2.41e-04 |
|
Periplasmic chaperone for outer membrane proteins, Skp family [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 442073 [Multi-domain] Cd Length: 171 Bit Score: 43.67 E-value: 2.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1182 KLDSELSALERQKDEKITQQEEKYEAIIQNLEKDRQKLVSSQEQDREQLIQKLNCEKDEAIQTALKEFKLEREVVEKELL 1261
Cdd:COG2825 43 AAQKKLEKEFKKRQAELQKLEKELQALQEKLQKEAATLSEEERQKKERELQKKQQELQRKQQEAQQDLQKRQQELLQPIL 122
|
90
....*....|...
gi 134304842 1262 EKVKHLENQIAKS 1274
Cdd:COG2825 123 EKIQKAIKEVAKE 135
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
959-1290 |
2.64e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 45.28 E-value: 2.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 959 LEDLKKLHVENDEKLQLLRAELQSlEQSHLKELEDTLQVRHiQEFEKVMTDHRVSLEELKKENQQIINQIQEshaeiIQE 1038
Cdd:COG4372 47 LEQLREELEQAREELEQLEEELEQ-ARSELEQLEEELEELN-EQLQAAQAELAQAQEELESLQEEAEELQEE-----LEE 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1039 KEKQLQELKLKVSDLSDTRCKLEVELALKEAETDEIKILLEESRAQQKETLKSLLEQETENLRTEISKLNQKIQDNNENY 1118
Cdd:COG4372 120 LQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQALDELLKEANRNAEKE 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1119 QVGLAELRTLMTIEKDQCISELISRHEEESNILKAELNKVTSLHNQAFEIEKNLKEQIIELQSKLDSELSALERQKDEKI 1198
Cdd:COG4372 200 EELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELE 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1199 TQQEEKYEAIIQNLEKDRQKLVSSQEqdreqlIQKLNCEKDEAIQTALKEFKLEREVVEKELLEKVKHLENQIAKSPAID 1278
Cdd:COG4372 280 IAALELEALEEAALELKLLALLLNLA------ALSLIGALEDALLAALLELAKKLELALAILLAELADLLQLLLVGLLDN 353
|
330
....*....|..
gi 134304842 1279 STRGDSSSLVAE 1290
Cdd:COG4372 354 DVLELLSKGAEA 365
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
959-1360 |
2.71e-04 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 45.62 E-value: 2.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 959 LEDLKKLHVEND--EKLQLLRAELQSLEQSHLKELEDtlqvrHIQEFEKVMTDHRVsleelkKENQQIINQIQEshaeII 1036
Cdd:pfam06160 31 LSKVKKLNLTGEtqEKFEEWRKKWDDIVTKSLPDIEE-----LLFEAEELNDKYRF------KKAKKALDEIEE----LL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1037 QEKEKQLQELKLKVSDL--SDTRCKLEVElALKEaETDEIKILLEESRAQQKETLKSLLEQ--ETENLRTEISKLNQKiQ 1112
Cdd:pfam06160 96 DDIEEDIKQILEELDELleSEEKNREEVE-ELKD-KYRELRKTLLANRFSYGPAIDELEKQlaEIEEEFSQFEELTES-G 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1113 DNNENYQVgLAELRTlMTIEKDQCISELISRHEEESNILKAELNKVTSLHNQ------AFEiEKNLKEQIIELQSKLDSE 1186
Cdd:pfam06160 173 DYLEAREV-LEKLEE-ETDALEELMEDIPPLYEELKTELPDQLEELKEGYREmeeegyALE-HLNVDKEIQQLEEQLEEN 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1187 LSALERQKDEKITQQEEKYEAIIQNL------EKDRQKLVSSQEQDREQLIQKLNCEKDEaIQTALKEFKLEREVVEKEL 1260
Cdd:pfam06160 250 LALLENLELDEAEEALEEIEERIDQLydllekEVDAKKYVEKNLPEIEDYLEHAEEQNKE-LKEELERVQQSYTLNENEL 328
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1261 lEKVKHLENQIAK--------SPAIDSTRGDSSSLVAELQ---------EKLQEEKAKFLEQLEEQEKRKNEEMQNVRTS 1323
Cdd:pfam06160 329 -ERVRGLEKQLEElekrydeiVERLEEKEVAYSELQEELEeileqleeiEEEQEEFKESLQSLRKDELEAREKLDEFKLE 407
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 134304842 1324 LIAeqqtnfntvlTREKMRKENI----------INDLSDKLKSTMQQ 1360
Cdd:pfam06160 408 LRE----------IKRLVEKSNLpglpesyldyFFDVSDEIEDLADE 444
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
1038-1333 |
5.25e-04 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 44.85 E-value: 5.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1038 EKEKQLQELKLKVSDLSDTRCKLeVELALKEAetdeIKILLEESRAQQKETLKSL-LEQETENLRTEISKLNQKIQDNNE 1116
Cdd:PLN03229 433 ELEGEVEKLKEQILKAKESSSKP-SELALNEM----IEKLKKEIDLEYTEAVIAMgLQERLENLREEFSKANSQDQLMHP 507
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1117 NYqvglaelrtlmtIEK-DQCISELISRHEEESNI--LKAELNKVTSLHNQAFEIEKNLKEQiiELQSKLDSELSALERQ 1193
Cdd:PLN03229 508 VL------------MEKiEKLKDEFNKRLSRAPNYlsLKYKLDMLNEFSRAKALSEKKSKAE--KLKAEINKKFKEVMDR 573
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1194 KDEKitqqeEKYEAIIQNLEKDRQKLVSSQEQDREQLIQKLNCEKDEAIQTALKEFKLEREVVEK------------ELL 1261
Cdd:PLN03229 574 PEIK-----EKMEALKAEVASSGASSGDELDDDLKEKVEKMKKEIELELAGVLKSMGLEVIGVTKknkdtaeqtpppNLQ 648
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 134304842 1262 EKVKHLENQIAK-------SPAIDSTRGDSSSLVAELQEKLQEEKAKFLEQLEEQEKRKNEEMQNvrTSLIAEQQTNFN 1333
Cdd:PLN03229 649 EKIESLNEEINKkiervirSSDLKSKIELLKLEVAKASKTPDVTEKEKIEALEQQIKQKIAEALN--SSELKEKFEELE 725
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
877-1377 |
5.48e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.83 E-value: 5.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 877 KLDGLIKETEENENKIKKLKGELVCLEevlqnkdnefALVKHEKEAVICLQNEKDQKLLEMEnimhsqnceiKELKQSRE 956
Cdd:pfam12128 245 KLQQEFNTLESAELRLSHLHFGYKSDE----------TLIASRQEERQETSAELNQLLRTLD----------DQWKEKRD 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 957 IVLEDLKKLhvenDEKLQLLRAELQSLEQSHLKELEDTLQVRHiQEFEKvMTDHRVSLEELKKENQQIINQIQESHAEII 1036
Cdd:pfam12128 305 ELNGELSAA----DAAVAKDRSELEALEDQHGAFLDADIETAA-ADQEQ-LPSWQSELENLEERLKALTGKHQDVTAKYN 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1037 QEKEKQLQELKLKVSDLSDtrcklevelalkeaETDEIKilleESRAQQKETLKSLLEQETENLRTEISKLNQKIQDNNE 1116
Cdd:pfam12128 379 RRRSKIKEQNNRDIAGIKD--------------KLAKIR----EARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEY 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1117 NYQVGLAELRTLmtIEKDQCISELISRHEeesnILKAELNKVTSLHNQAFEIEKNLKEQIIELQSKLDSELSALeRQKDE 1196
Cdd:pfam12128 441 RLKSRLGELKLR--LNQATATPELLLQLE----NFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEAL-RQASR 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1197 KITQQEEKYEAIIQNLEKDRQKLV---SSQEQDREQLIQKLncekdeaIQTA-LKEFKLEREVVEKEL------------ 1260
Cdd:pfam12128 514 RLEERQSALDELELQLFPQAGTLLhflRKEAPDWEQSIGKV-------ISPElLHRTDLDPEVWDGSVggelnlygvkld 586
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1261 LEKVKH-----LENQI-AKSPAIDSTRGDSSSLVAELQEKLQEEKAKfLEQLEEQEKRKNEEMQNVRTSLI------AEQ 1328
Cdd:pfam12128 587 LKRIDVpewaaSEEELrERLDKAEEALQSAREKQAAAEEQLVQANGE-LEKASREETFARTALKNARLDLRrlfdekQSE 665
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 134304842 1329 QTNFNTVLTREKMRKENIINDLS-------------------DKLKSTMQQQERDKDLIESLSEDRAR 1377
Cdd:pfam12128 666 KDKKNKALAERKDSANERLNSLEaqlkqldkkhqawleeqkeQKREARTEKQAYWQVVEGALDAQLAL 733
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1151-1363 |
7.65e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 7.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1151 LKAELNKVTSLHNQAFEIEKNLKEQIIELQS---KLDSELSALERQKDEkITQQEEKYEAIIQNLEKDRQKLVSSQEQDR 1227
Cdd:COG4942 25 AEAELEQLQQEIAELEKELAALKKEEKALLKqlaALERRIAALARRIRA-LEQELAALEAELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1228 EQLIQKLN----CEKDEAIQTALKEFKLEREVVEKELLEKV-KHLENQIAkspAIDSTRGDSSSLVAELQEKlQEEKAKF 1302
Cdd:COG4942 104 EELAELLRalyrLGRQPPLALLLSPEDFLDAVRRLQYLKYLaPARREQAE---ELRADLAELAALRAELEAE-RAELEAL 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 134304842 1303 LEQLEEQEKRKNEEMQNvRTSLIAEQQTNFNTVLTR--EKMRKENIINDLSDKLKSTMQQQER 1363
Cdd:COG4942 180 LAELEEERAALEALKAE-RQKLLARLEKELAELAAElaELQQEAEELEALIARLEAEAAAAAE 241
|
|
| OmpH |
smart00935 |
Outer membrane protein (OmpH-like); This family includes outer membrane proteins such as OmpH ... |
1186-1273 |
8.90e-04 |
|
Outer membrane protein (OmpH-like); This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery.
Pssm-ID: 214922 [Multi-domain] Cd Length: 140 Bit Score: 41.03 E-value: 8.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1186 ELSALERQKDEKITQQEEKYEAIIQNLEKDRQKLVSSQEQDREQLIQKLNCEKDEAIQTALKEFKLEREVVEKELLEKVK 1265
Cdd:smart00935 22 QLEKEFKKRQAELEKLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKVQEFQRKQQKLQQDLQKRQQEELQKILDKIN 101
|
....*...
gi 134304842 1266 HLENQIAK 1273
Cdd:smart00935 102 KAIKEVAK 109
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
888-1127 |
1.07e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 1.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 888 NENKIKKLKGELVCLEEVLQNKDNEFALVKHEKEAvicLQNEKD--QKLLEMenimhsqnceikelkQSREIvleDLKKL 965
Cdd:COG4913 608 NRAKLAALEAELAELEEELAEAEERLEALEAELDA---LQERREalQRLAEY---------------SWDEI---DVASA 666
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 966 HvendEKLQLLRAELQSLEQSH--LKELEDTLQvrhiqefekvmtDHRVSLEELKKENQQIINQIQESHAEiIQEKEKQL 1043
Cdd:COG4913 667 E----REIAELEAELERLDASSddLAALEEQLE------------ELEAELEELEEELDELKGEIGRLEKE-LEQAEEEL 729
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1044 QELKLKVSDLSDTRCKLEVELALKEAETdeikILLEESRAQQKETLKSLLEQETENLRTEISKLNQKIQDNNENYQVGLA 1123
Cdd:COG4913 730 DELQDRLEAAEDLARLELRALLEERFAA----ALGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNREWPAETA 805
|
....
gi 134304842 1124 ELRT 1127
Cdd:COG4913 806 DLDA 809
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
824-1108 |
1.07e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.80 E-value: 1.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 824 TFVQKEQCDfsNSLKCTAVEIRNIIEKVKCSLEITLKEKHQKELLS----LKNEYEGKLDGLIKETEENENKIKKLKGEL 899
Cdd:TIGR00618 571 SFSILTQCD--NRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQhallRKLQPEQDLQDVRLHLQQCSQELALKLTAL 648
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 900 VCLEEVL-QNKDNEFALVKHEKEAVIC---------LQNEKDQKLLEMENIMHSQ---NCEIKELKQSREIVLEDLKKLH 966
Cdd:TIGR00618 649 HALQLTLtQERVREHALSIRVLPKELLasrqlalqkMQSEKEQLTYWKEMLAQCQtllRELETHIEEYDREFNEIENASS 728
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 967 VE------NDEKLQLLRAELQSLEQSHLKELEDTLQVRHIQEFEKVMTDHRvsLEELKKENQQIINQIQES-------HA 1033
Cdd:TIGR00618 729 SLgsdlaaREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAE--LSHLAAEIQFFNRLREEDthllktlEA 806
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 134304842 1034 EIIQEKEKQLQELKLKVSDLSDTRCKLEVELALKEAETDEIKILLE--ESRAQQKETLKslleQETENLRTEISKLN 1108
Cdd:TIGR00618 807 EIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLkyEECSKQLAQLT----QEQAKIIQLSDKLN 879
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1174-1395 |
1.08e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 1.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1174 EQIIELQSKLDsELSALERQKDEKITQQEEKYEAIIQNLEKDRQKLVssqeqDREQLIQKLNcEKDEAIQTALKEFKLER 1253
Cdd:COG4942 20 DAAAEAEAELE-QLQQEIAELEKELAALKKEEKALLKQLAALERRIA-----ALARRIRALE-QELAALEAELAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1254 EVVEKELLEKVKHLENQIAKspAIDSTRGDSSSLVAELQEKLQEEK-AKFLEQLEEQEKRKNEEMQNVRTSLIAEQQTnf 1332
Cdd:COG4942 93 AELRAELEAQKEELAELLRA--LYRLGRQPPLALLLSPEDFLDAVRrLQYLKYLAPARREQAEELRADLAELAALRAE-- 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 134304842 1333 ntvLTREKMRKENIINDLSDKLKSTMQQQERDKDLIESLSEDRARLLEekkkleeEVSKLRSS 1395
Cdd:COG4942 169 ---LEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAA-------ELAELQQE 221
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
857-1365 |
1.16e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 43.89 E-value: 1.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 857 ITLKEKHQKELLSLKNEYEGKLDGLIKETEENENKIKKLKGELVCLEEVLQNKDNefaLVKHEKEAVICLQNEKDQKLLE 936
Cdd:TIGR01612 2172 ITSAAKFSKDFFEFIEDISDSLNDDIDALQIKYNLNQTKKHMISILADATKDHNN---LIEKEKEATKIINNLTELFTID 2248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 937 MEN----IMHSQNCEI----KELKQSREIVLEDLKKLHVEN-------DEKLQLLRAELQSLEQSHLKELEDTLQvrHIQ 1001
Cdd:TIGR01612 2249 FNNadadILHNNKIQIiyfnSELHKSIESIKKLYKKINAFKllnishiNEKYFDISKEFDNIIQLQKHKLTENLN--DLK 2326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1002 EFEKVMTDH-RVSLEELKKENQQIINQIQESHAEIIQeKEKQLQELKlKVSDlsdtrcklevelalKEAE-----TDEIK 1075
Cdd:TIGR01612 2327 EIDQYISDKkNIFLHALNENTNFNFNALKEIYDDIIN-RENKADEIE-NINN--------------KENEnimqyIDTIT 2390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1076 ILLEESraqqKETLKSLLEQETENlrteiSKLNQKIQDNNENYQVGLAE--LRTLMTIEKDQC-ISELISRHEEESNI-- 1150
Cdd:TIGR01612 2391 KLTEKI----QDILIFVTTYENDN-----NIIKQHIQDNDENDVSKIKDnlKKTIQSFQEILNkIDEIKAQFYGGNNInn 2461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1151 ----LKAELNKVTSLHNQAFEIEKNLkeqiIELQSKLDSELSALERQKDEKITQQeekYEAIIQNLEKDRQKLVSSQEQD 1226
Cdd:TIGR01612 2462 iiitISQNANDVKNHFSKDLTIENEL----IQIQKRLEDIKNAAHEIRSEQITKY---TNAIHNHIEEQFKKIENNSNKD 2534
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1227 REQLIQKLncekDEAIQTaLKEFKLEREV-------VEKELLEKVKHLENQIAkspAIDSTRGDSSSLVAELQEKLQEEK 1299
Cdd:TIGR01612 2535 EVYKINEI----DNIIEK-IINYNKEPEVklhaiidNKNEFASIIPDIKNLIA---LIESEYGNNNNISYKVAIKHEEDA 2606
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 134304842 1300 AKFLEQLEEQekrkneemQNVRTSLIAEQQTNFNTVltreKMRKENIINDlsDKLKSTMQQQERDK 1365
Cdd:TIGR01612 2607 NNIILDLNKS--------QNILNHLIHKNKKIIEDL----GNIKHGIHNN--NNLHTINKHEEISK 2658
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
1013-1208 |
1.22e-03 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 42.82 E-value: 1.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1013 SLEELKKEnqqiINQIQESHAEIIQEKEKQLQELKlKVSDLSDTRCKLEVELALKEaetdeikilLEESRAQQKETLKSL 1092
Cdd:pfam09787 1 NLESAKQE----LADYKQKAARILQSKEKLIASLK-EGSGVEGLDSSTALTLELEE---------LRQERDLLREEIQKL 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1093 lEQETENLRTEISKLNQKIQDNNENYQVGLAELRTLMTIEKD--QCISELISRHEEESNILKAELNK-----VTSLHNQA 1165
Cdd:pfam09787 67 -RGQIQQLRTELQELEAQQQEEAESSREQLQELEEQLATERSarREAEAELERLQEELRYLEEELRRskatlQSRIKDRE 145
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 134304842 1166 FEIEKnLKEQII--ELQSKLDSELSALERQKDEKITQQEEKYEAI 1208
Cdd:pfam09787 146 AEIEK-LRNQLTskSQSSSSQSELENRLHQLTETLIQKQTMLEAL 189
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
969-1130 |
1.29e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 1.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 969 NDEKLQLLRAELQSLEQSH---------LKELEDTLQVRH-----IQEFEKVMTDHRVSLEELKkENQQIINQIQESHAE 1034
Cdd:COG4913 608 NRAKLAALEAELAELEEELaeaeerleaLEAELDALQERRealqrLAEYSWDEIDVASAEREIA-ELEAELERLDASSDD 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1035 I------IQEKEKQLQELKLKVSDLSDTRCKLEVELALKEAETDEIKILLEESRAQQKETLKSLLEQE-----TENLRTE 1103
Cdd:COG4913 687 LaaleeqLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERfaaalGDAVERE 766
|
170 180
....*....|....*....|....*...
gi 134304842 1104 ISK-LNQKIQDNNENYQVGLAELRTLMT 1130
Cdd:COG4913 767 LREnLEERIDALRARLNRAEEELERAMR 794
|
|
| ATG17_like |
pfam04108 |
Autophagy protein ATG17-like domain; This domain is found in the autophagy-related proteins ... |
404-538 |
1.37e-03 |
|
Autophagy protein ATG17-like domain; This domain is found in the autophagy-related proteins ATG17 and ATG11, conserved across eukaryotes. ATG17 forms a complex with ATG29 and ATG31, critical for both PAS (preautophagosomal structure) formation and autophagy. Together with ATG13, it is required for ATG1 kinase activation. ATG11 is a scaffold protein required for the cytoplasm-to-vacuole targeting (Cvt) pathway during starvation and to recruit ATG proteins to the pre-autophagosome. It is also required for ATG1 kinase activation. In many eukaryotes, ATG11 (the orthologue in mammals is RB1-inducible coiled-coil protein 1 (RB1CC1) and in S. pombe is Taz1-interacting factor 1 (taf1)) is essential for bulk autophagy, except in S.cerevisiae. ATG17 and ATG11 are large similar proteins, both predicted to be almost entirely helical, containing conserved coiled-coil regions and lack obvious functional motifs.
Pssm-ID: 427715 [Multi-domain] Cd Length: 360 Bit Score: 42.76 E-value: 1.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 404 KDASVLPDLCLSHANQLMIMLQNHRKLLDIKQKCTTAKQELANNLHV------RLKWCCFVMLHADQDGEKLQALLRLVI 477
Cdd:pfam04108 214 NDARELDDVVPELQDRLDEMENNYERLQKLLEQKNSLIDELLSALQLiaeiqsRLPEYLAALKEFEERWEEEKETIEDYL 293
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 134304842 478 ELLERVkiVEALSTVPQMYCLAVVEVVRRKMFIKHYREWAGALVKDGKRLYEAEKSKRESF 538
Cdd:pfam04108 294 SELEDL--REFYEGFPSAYGSLLLEVERRREWAEKMKKILRKLAEELDRLQEEERKRREKF 352
|
|
| PTZ00341 |
PTZ00341 |
Ring-infected erythrocyte surface antigen; Provisional |
948-1322 |
1.39e-03 |
|
Ring-infected erythrocyte surface antigen; Provisional
Pssm-ID: 173534 [Multi-domain] Cd Length: 1136 Bit Score: 43.62 E-value: 1.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 948 IKELKQSREivlEDLKKLHVENDEKLQLLRAELQSLEQ--SHLKELED-TLQVRHIQEFEKVMTdhrVSLEELKKENQQI 1024
Cdd:PTZ00341 771 AKKLEQRSK---ANKEELANENNKLMNILKEYFGNNEQinSITYNFENiNLNEDNENGSKKILD---LNHKDQKEIFEEI 844
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1025 INQIQESHAEIIQEKEKQLQELKLKVSDLSDTRCKLEVELALKEAETDEIKIL--LEESRAQQKETlKSLleqeTENLRT 1102
Cdd:PTZ00341 845 ISYIVDISLSDIENTAKNAAEQILSDEGLDEKKLKKRAESLKKLANAIEKYAGggKKDKKAKKKDA-KDL----SGNIAH 919
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1103 EISKLNQKIQDNNENYQVGLAElRTLMTIEKDqcISELISRHEEESNILKAELNKVTSLHNQAFE-IEKNLKEQIIElqs 1181
Cdd:PTZ00341 920 EINLINKELKNQNENVPEHLKE-HAEANIEED--AEENVEEDAEENVEENVEENVEENVEENVEEnVEENVEENVEE--- 993
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1182 kldselsALERQKDEKITQQEEkyEAIIQNLEKDRQKLVSSQEQDREQLIQKLNCEKDEAIQTALKEFKLE--REVVEKE 1259
Cdd:PTZ00341 994 -------NVEENVEENIEENVE--ENVEENIEENVEEYDEENVEEVEENVEEYDEENVEEIEENAEENVEEniEENIEEY 1064
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 134304842 1260 LLEKVKHLENQIAKSPAiDSTRGDSSSLVAELQEKLQEEKAKFLEQLEEQEKRKNEEMQNVRT 1322
Cdd:PTZ00341 1065 DEENVEEIEENIEENIE-ENVEENVEENVEEIEENVEENVEENAEENAEENAEENAEEYDDEN 1126
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
947-1128 |
1.49e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 1.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 947 EIKELKQSREIVLEDLKKLHVENDE-KLQLLRAELQSLEQShLKELEDtlqvrHIQEFEKVMTDHRVSLEELKkenqqii 1025
Cdd:COG4913 263 RYAAARERLAELEYLRAALRLWFAQrRLELLEAELEELRAE-LARLEA-----ELERLEARLDALREELDELE------- 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1026 NQIQESHAEIIQEKEKQLQELKLKVSDLSDTRCKLEVELA-LKEAETDEIKILLEesRAQQKETLKSLLEQETENLRTEI 1104
Cdd:COG4913 330 AQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAaLGLPLPASAEEFAA--LRAEAAALLEALEEELEALEEAL 407
|
170 180
....*....|....*....|....
gi 134304842 1105 SKLNQKIQDNNENYQVGLAELRTL 1128
Cdd:COG4913 408 AEAEAALRDLRRELRELEAEIASL 431
|
|
| Caldesmon |
pfam02029 |
Caldesmon; |
828-1113 |
1.62e-03 |
|
Caldesmon;
Pssm-ID: 460421 [Multi-domain] Cd Length: 495 Bit Score: 42.93 E-value: 1.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 828 KEQCDFSNSLKCTAVEIRNIIEKVKCSLEITLKEKHQKELLSLKNEYEGKLDGliKETEENENKIKKLKGELVCLEEVLQ 907
Cdd:pfam02029 80 QEALERQKEFDPTIADEKESVAERKENNEEEENSSWEKEEKRDSRLGRYKEEE--TEIREKEYQENKWSTEVRQAEEEGE 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 908 NKDNEFALVKHEKEAVICLQNEKDQKLlemenimhsqnceIKELKQSREI-VLEDLKKLHVEndEKLQLLRAELQSLEQS 986
Cdd:pfam02029 158 EEEDKSEEAEEVPTENFAKEEVKDEKI-------------KKEKKVKYESkVFLDQKRGHPE--VKSQNGEEEVTKLKVT 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 987 HLKELEDTLQVRHIQEFEKVMTDHRVSLEELKKENQQIINQIQESHAEIIQEKEKQLQELKLKvsdLSDTRCKLEVELAL 1066
Cdd:pfam02029 223 TKRRQGGLSQSQEREEEAEVFLEAEQKLEELRRRRQEKESEEFEKLRQKQQEAELELEELKKK---REERRKLLEEEEQR 299
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 134304842 1067 KEAETDEIKILLEESRAQQKEtlkslleqETENLRTEISKLNQKIQD 1113
Cdd:pfam02029 300 RKQEEAERKLREEEEKRRMKE--------EIERRRAEAAEKRQKLPE 338
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
859-1115 |
1.71e-03 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 42.92 E-value: 1.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 859 LKEKHQKELLSLKNEYEgKLDGLIKETEENENK---------IKKLKGEL----------VCLEEVLQNKDNEFALVKHE 919
Cdd:PLN03229 423 KREAVKTPVRELEGEVE-KLKEQILKAKESSSKpselalnemIEKLKKEIdleyteaviaMGLQERLENLREEFSKANSQ 501
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 920 --------KEAVICLQNEKDQKL------------LEMENIMHSQNCEIKELKQSREIVLEDLKKLHVEND-----EKLQ 974
Cdd:PLN03229 502 dqlmhpvlMEKIEKLKDEFNKRLsrapnylslkykLDMLNEFSRAKALSEKKSKAEKLKAEINKKFKEVMDrpeikEKME 581
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 975 LLRAELQSLEQSHLKELEDTL-----QVRHIQEFE--KVMTDHRVSLEELKKENQQIINQI-----QESHAEIIQEKEKQ 1042
Cdd:PLN03229 582 ALKAEVASSGASSGDELDDDLkekveKMKKEIELElaGVLKSMGLEVIGVTKKNKDTAEQTpppnlQEKIESLNEEINKK 661
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 134304842 1043 LQELkLKVSDLSDTRCKLEVELA-----LKEAETDEIKILLEESRAQQKETLKSL-LEQETENLRTEISKLNQKIQDNN 1115
Cdd:PLN03229 662 IERV-IRSSDLKSKIELLKLEVAkasktPDVTEKEKIEALEQQIKQKIAEALNSSeLKEKFEELEAELAAARETAAESN 739
|
|
| PTZ00440 |
PTZ00440 |
reticulocyte binding protein 2-like protein; Provisional |
864-1229 |
1.77e-03 |
|
reticulocyte binding protein 2-like protein; Provisional
Pssm-ID: 240419 [Multi-domain] Cd Length: 2722 Bit Score: 43.28 E-value: 1.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 864 QKELLSLKNEYEGKLDGL-----------IKETEENENKIKKLKGELVCLEEVlqnKDNEFALVKHEKEAVICLQNEKDQ 932
Cdd:PTZ00440 2257 KNKINNIKDKINDKEKELinvdssftlesIKTFNEIYDDIKSNIGDLYKLEDT---NNDELKKVKLYIENITHLLNRINT 2333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 933 KLLEMENIMHSQNCEIKELKQSREIVlEDLKKLhvenDEKLQLLRAELQSLeqshLKELEDTLQVRHIQEFEKVMTDHRV 1012
Cdd:PTZ00440 2334 LINDLDNYQDENYGKDKNIELNNENN-SYIIKT----KEKINNLKEEFSKL----LKNIKRNNTLCNNNNIKDFISNIGK 2404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1013 SLEELKKENQQIINQiqeshaeiiQEKEKQLQELKLKVSDL-SDTRCKLEVELALKEAETDEIKILLEESRAQQKETLKS 1091
Cdd:PTZ00440 2405 SVETIKQRFSSNLPE---------KEKLHQIEENLNEIKNImNETKRISNVDAFTNKILQDIDNEKNKENNNMNAEKIDD 2475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1092 LLEQETENLRTEISKLNQ------KIQDNNENYQVGLAELrTLMTIEKDQCISELISRHEEESNILKAELNKVTSLHNQA 1165
Cdd:PTZ00440 2476 LIENVTSHNEKIKSELLIindalrRVKEKKDEMNKLFNSL-TENNNNNNNSAKNIVDNSTYIINELESHVSKLNELLSYI 2554
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 134304842 1166 FEIEKNLKEQIIELQSKLDSELSALERQKDEKITQQEEKYEAIIQNLEKDRqkLVSSQEQDREQ 1229
Cdd:PTZ00440 2555 DNEIKELENEKLKLLEKAKIEESRKERERIESETQEDNTDEEQINRQQQER--LQKEEEQKAYS 2616
|
|
| PTZ00341 |
PTZ00341 |
Ring-infected erythrocyte surface antigen; Provisional |
859-1240 |
2.11e-03 |
|
Ring-infected erythrocyte surface antigen; Provisional
Pssm-ID: 173534 [Multi-domain] Cd Length: 1136 Bit Score: 42.85 E-value: 2.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 859 LKEKHQKELLSLKNEyEGKLDGLIKETEENENKIKKLKGELvclEEVLQNKDNEfalvkHEKEAVICLQNEKDQKLLEmE 938
Cdd:PTZ00341 774 LEQRSKANKEELANE-NNKLMNILKEYFGNNEQINSITYNF---ENINLNEDNE-----NGSKKILDLNHKDQKEIFE-E 843
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 939 NIMHSQNCEIKELKQSREIVLEDLkkLHVEN-DEKLqlLRAELQSLEQSHLKELEDTLQVRHIQEFEKVMTD-------H 1010
Cdd:PTZ00341 844 IISYIVDISLSDIENTAKNAAEQI--LSDEGlDEKK--LKKRAESLKKLANAIEKYAGGGKKDKKAKKKDAKdlsgniaH 919
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1011 RVSL--EELKKENQQIINQIQE-SHAEIIQEKEKQLQE-LKLKVSDLSDTRCKLEVELALKEAETDEIKILLEESRAQQK 1086
Cdd:PTZ00341 920 EINLinKELKNQNENVPEHLKEhAEANIEEDAEENVEEdAEENVEENVEENVEENVEENVEENVEENVEENVEENVEENV 999
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1087 EtlksllEQETENLRTEISklnQKIQDNNENYQVGLAELRTLMTIEKDQCISELISRHEEESNILKAELNKVTSLHNQAF 1166
Cdd:PTZ00341 1000 E------ENIEENVEENVE---ENIEENVEEYDEENVEEVEENVEEYDEENVEEIEENAEENVEENIEENIEEYDEENVE 1070
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 134304842 1167 EIEKNLKEQIIE-LQSKLDSELSALERQKDEKITQQEEkyEAIIQNLEKDrqklvssQEQDREQLIQKLNCEKDE 1240
Cdd:PTZ00341 1071 EIEENIEENIEEnVEENVEENVEEIEENVEENVEENAE--ENAEENAEEN-------AEEYDDENPEEHNEEYDE 1136
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
807-1373 |
2.20e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 43.12 E-value: 2.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 807 DSHFSIQTIKEDLCHFRTFVQKEQCDFSNsLKCTAVEIRNIIEKVKCSLEITLKEKHQKELLSLKNEYEgKLDGLIKETE 886
Cdd:TIGR01612 1650 DNLNSLQEFLESLKDQKKNIEDKKKELDE-LDSEIEKIEIDVDQHKKNYEIGIIEKIKEIAIANKEEIE-SIKELIEPTI 1727
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 887 EN---ENKIKKLKGelVCLEEVLQNKDNEFALVKHEkeaviclqnekdqkLLEMENIM-------HSQNCEIKELKQSRE 956
Cdd:TIGR01612 1728 ENlisSFNTNDLEG--IDPNEKLEEYNTEIGDIYEE--------------FIELYNIIagcletvSKEPITYDEIKNTRI 1791
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 957 IVL-EDLKKLHVENDEKLQLLRAELQSLEQ--SHLKELEDTLQVRHIQEFEKV---MTDHRVSLEELKKENQQ-----II 1025
Cdd:TIGR01612 1792 NAQnEFLKIIEIEKKSKSYLDDIEAKEFDRiiNHFKKKLDHVNDKFTKEYSKInegFDDISKSIENVKNSTDEnllfdIL 1871
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1026 NQIQESHAEIIQEK----EKQLQELKLKVSDLSDT---------------RCKLEVELALKEAETDEIKILLE-----ES 1081
Cdd:TIGR01612 1872 NKTKDAYAGIIGKKyysyKDEAEKIFINISKLANSiniqiqnnsgidlfdNINIAILSSLDSEKEDTLKFIPSpekepEI 1951
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1082 RAQQKETLKSLL------------EQETENLRTEISKLNQKIQDNNENYQVglaelrtlmtiekdqcISELISRHEEESN 1149
Cdd:TIGR01612 1952 YTKIRDSYDTLLdifkksqdlhkkEQDTLNIIFENQQLYEKIQASNELKDT----------------LSDLKYKKEKILN 2015
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1150 ILKAELNKVTSLhNQAFEIEKNLkEQIIEL--QSKLDSELSALERQK-----DEKITQQEEKYEAIIQNLEKdrqklVSS 1222
Cdd:TIGR01612 2016 DVKLLLHKFDEL-NKLSCDSQNY-DTILELskQDKIKEKIDNYEKEKekfgiDFDVKAMEEKFDNDIKDIEK-----FEN 2088
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1223 QEQDREQLIQKLNCEKDEAIQT--ALKE----FKLEREVVEKELLEKvKHLENQIAKspaidsTRGDS-----SSLVAEL 1291
Cdd:TIGR01612 2089 NYKHSEKDNHDFSEEKDNIIQSkkKLKElteaFNTEIKIIEDKIIEK-NDLIDKLIE------MRKECllfsyATLVETL 2161
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1292 QEKLQEEkAKFLEQLEEQEKRKNEEMQNVRTSL---IAEQQTNFNTVLTREKMrkENIINDLSDKLKSTMQQQERDKDLI 1368
Cdd:TIGR01612 2162 KSKVINH-SEFITSAAKFSKDFFEFIEDISDSLnddIDALQIKYNLNQTKKHM--ISILADATKDHNNLIEKEKEATKII 2238
|
....*
gi 134304842 1369 ESLSE 1373
Cdd:TIGR01612 2239 NNLTE 2243
|
|
| Ubl_TBK1_like |
cd12219 |
ubiquitin-like (Ubl) domain found in non-canonical Inhibitor of kappa B kinases IKKepsilon and ... |
3-76 |
2.57e-03 |
|
ubiquitin-like (Ubl) domain found in non-canonical Inhibitor of kappa B kinases IKKepsilon and TBK1, and similar proteins; IKKepsilon and TBK1 (TRAF family member-associated NF-kappaB activator-binding kinase 1) are non-canonical members of IKK family. They have been characterized as activators of nuclear factor-kappaB (NF-kappaB), but they are not essential for NF-kappaB activation. They play critical roles in antiviral response via phosphorylation and activation of transcription factors IRF3, IRF7, STAT1 and STAT3. They are also involved in the survival, tumorigenesis and development of various cancers. Both IKKepsilon and TBK1 contain an N-terminal protein kinase domain followed a ubiquitin-like (Ubl) domain. The Ubl domain acts as a protein-protein interaction domain, and has been implicated in regulating kinase activity, which modulates interactions in the interferon pathway.
Pssm-ID: 340518 Cd Length: 77 Bit Score: 38.37 E-value: 2.57e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 134304842 3 LYVFLVNTGTTLTF---DTEltvqTVADLKHAIQSKYKIAIQHQVLVVNGGE-CMAADRRVCTYSAGTDTNPIFLFNK 76
Cdd:cd12219 4 IHVFSVSTCELLKIyldPTE----TLAEFQELIAEQTEIPAKNQLLLFEGQLlEEEVTLPVSDYPKTTEENPIILFNK 77
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
950-1371 |
2.74e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 42.50 E-value: 2.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 950 ELKQSREIVLEDLKKLHVENdEKLQLLRAELQSLeQSHLKELEDTLqvRHIQEFEKVMTDHRVSLEELKKENQQIINQIQ 1029
Cdd:pfam10174 40 ELKKERALRKEEAARISVLK-EQYRVTQEENQHL-QLTIQALQDEL--RAQRDLNQLLQQDFTTSPVDGEDKFSTPELTE 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1030 ESHAEIIQEKEKQLQELKLKVSDLSDTRCKLEVELALKEAETDEIKILLE-------------------------ESRAQ 1084
Cdd:pfam10174 116 ENFRRLQSEHERQAKELFLLRKTLEEMELRIETQKQTLGARDESIKKLLEmlqskglpkksgeedwertrriaeaEMQLG 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1085 QKETLKSLLEQETENLRTEISKLNQKIQDNnenyqvglAELRTLMTI--EKDQCISEL---ISRHEEESNILKAELNKVT 1159
Cdd:pfam10174 196 HLEVLLDQKEKENIHLREELHRRNQLQPDP--------AKTKALQTVieMKDTKISSLernIRDLEDEVQMLKTNGLLHT 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1160 SLHNQ---AFEIEKN----LKEQIIELQSKL---DSELSALeRQKDEKITQQ-----------------EEKYEAIIQ-- 1210
Cdd:pfam10174 268 EDREEeikQMEVYKShskfMKNKIDQLKQELskkESELLAL-QTKLETLTNQnsdckqhievlkesltaKEQRAAILQte 346
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1211 ------NLEKDRQKLVSSQEQdreqlIQKLNCEKDeAIQTALKEFKLEREVVEKE----------LLEKVKHLENQIA-- 1272
Cdd:pfam10174 347 vdalrlRLEEKESFLNKKTKQ-----LQDLTEEKS-TLAGEIRDLKDMLDVKERKinvlqkkienLQEQLRDKDKQLAgl 420
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1273 ----KSPAIDSTRGDSSslVAELQEKLQeEKAKFLEQLEEQEKR----KNEEMQNVRTSL-IAEQQTNfntVLTREKMRK 1343
Cdd:pfam10174 421 kervKSLQTDSSNTDTA--LTTLEEALS-EKERIIERLKEQRERedreRLEELESLKKENkDLKEKVS---ALQPELTEK 494
|
490 500
....*....|....*....|....*...
gi 134304842 1344 ENIINDLSDKLKSTMQQQERDKDLIESL 1371
Cdd:pfam10174 495 ESSLIDLKEHASSLASSGLKKDSKLKSL 522
|
|
| HMMR_N |
pfam15905 |
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of ... |
1149-1329 |
2.74e-03 |
|
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of eukaryotic hyaluronan-mediated motility receptor proteins. The protein is functionally associated with BRCA1 and thus predicted to be a common, low-penetrance breast cancer candidate.
Pssm-ID: 464932 [Multi-domain] Cd Length: 329 Bit Score: 41.72 E-value: 2.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1149 NILKAELNKvtsLHNQAFEIEKNLKEQIIELQSKLDSELSALERQKdEKITQQEEKYEAIIQnlEKDRQKlvsSQEQDRE 1228
Cdd:pfam15905 155 SSLSMELMK---LRNKLEAKMKEVMAKQEGMEGKLQVTQKNLEHSK-GKVAQLEEKLVSTEK--EKIEEK---SETEKLL 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1229 QLIQKLNCEKDEAIQTALKEFKLErevvekELLEKvKHLENQIAKSpAIDSTRGDSSSLVAELQEK---LQEEKAKFLEQ 1305
Cdd:pfam15905 226 EYITELSCVSEQVEKYKLDIAQLE------ELLKE-KNDEIESLKQ-SLEEKEQELSKQIKDLNEKcklLESEKEELLRE 297
|
170 180
....*....|....*....|....
gi 134304842 1306 LEEQEKRKNEEMQNVRTSLIAEQQ 1329
Cdd:pfam15905 298 YEEKEQTLNAELEELKEKLTLEEQ 321
|
|
| CCDC14 |
pfam15254 |
Coiled-coil domain-containing protein 14; This protein family, Coiled-coil domain-containing ... |
1043-1306 |
3.11e-03 |
|
Coiled-coil domain-containing protein 14; This protein family, Coiled-coil domain-containing protein 14 (CCDC14) is a domain of unknown function. This family of proteins is found in eukaryotes. Proteins in this family are typically between 301 and 912 amino acids in length.
Pssm-ID: 464594 Cd Length: 857 Bit Score: 42.09 E-value: 3.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1043 LQELKLKVSDLSDT---RCKLEVE--LALKEAETDEIKILLEESRAQQKetlkslLEQETENLRTEISKLNQKIQDNNen 1117
Cdd:pfam15254 343 LGELKALVADQEDSevlRLITEVEacVSLLPAVSGNTNIQAEIALALQP------LRSENAQLRRQLRILNQQLREQE-- 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1118 yqvglaelRTLMTIEKDQCISELISrheeesniLKAeLNKvtSLHNQAFEIEKNLKEqiieLQSKLDSELSALERQKDEK 1197
Cdd:pfam15254 415 --------KTEKTSGSGDCNLELFS--------LQS-LNM--SLQNQLQESLKSQEL----LQSKNEELLKVIENQKEEN 471
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1198 itqqeEKYEAIIQnlEKDRQKLVSSQEQDREqlIQKLNCEKDEAIqTALKEFKLEREVVEKellekvkhlENQIAkspAI 1277
Cdd:pfam15254 472 -----KKLTKIFK--EKEQTLLENKQQFDIE--TTRVKIELEEAL-VNMKSFQFKLEAAEK---------ENQIL---GI 529
|
250 260 270
....*....|....*....|....*....|
gi 134304842 1278 DSTRGDSS-SLVAELQEKLQEEKAKFLEQL 1306
Cdd:pfam15254 530 TLRQRDAEvTRLRELTRTLQGSMAKLLSDL 559
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1137-1273 |
3.17e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.07 E-value: 3.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1137 ISELISRHEEESNILKAELNKvtslhnqafeieknLKEQIIELQSKLDSELSALErQKDEKITQQEEKYEAIIQNLEKDR 1216
Cdd:PRK12704 66 IHKLRNEFEKELRERRNELQK--------------LEKRLLQKEENLDRKLELLE-KREEELEKKEKELEQKQQELEKKE 130
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 134304842 1217 QKLVSSQEQDREQLIQKLNCEKDEA----IQTALKEFKLEREVVEKELLEKVKHLENQIAK 1273
Cdd:PRK12704 131 EELEELIEEQLQELERISGLTAEEAkeilLEKVEEEARHEAAVLIKEIEEEAKEEADKKAK 191
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
1009-1357 |
3.20e-03 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 42.34 E-value: 3.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1009 DHRVSLEELKKENQQIINQIQESHAE-----IIQEKEKQLQE---------LKLKVS------DLSDTRCKLEVElalke 1068
Cdd:PTZ00108 901 DYKEFLESETLKEKDVIVDYRDYSTAntvhfTVKLNDGVLEQweeegiekvFKLKSTisttnmVLFDENGKIKKY----- 975
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1069 aeTDEIKILLE------ESRAQQKETLKSLLEQETENLRTEISKL----NQKIQDNNENYQVGLAELRTLMTIEKDQcis 1138
Cdd:PTZ00108 976 --SDALDILKEfylvrlDLYKKRKEYLLGKLERELARLSNKVRFIkhviNGELVITNAKKKDLVKELKKLGYVRFKD--- 1050
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1139 elISRHEEESNILKAELNKVTSLHNQAFEIEKNLKEQIiELQSKLDSELSALERQKDEKITQQEEKYEAIIQNLEK---- 1214
Cdd:PTZ00108 1051 --IIKKKSEKITAEEEEGAEEDDEADDEDDEEELGAAV-SYDYLLSMPIWSLTKEKVEKLNAELEKKEKELEKLKNttpk 1127
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1215 -----DRQKLVS---SQEQDREQLIQKLNCEKDEAIQTALKEFKLEREVVEKELLEKVKHLENQIAKSPAIDSTRGDSSS 1286
Cdd:PTZ00108 1128 dmwleDLDKFEEaleEQEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKR 1207
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 134304842 1287 LVAELQEKLQEEKAKFLEQLEEQEKRKNEEMQNVRTSLIAEQQTNFNTVLTREKMRKENIINDLSDKLKST 1357
Cdd:PTZ00108 1208 KLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRV 1278
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1212-1355 |
3.22e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.07 E-value: 3.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1212 LEKDRQKLVSSQEQDREQLIQ----KLNCEKDEAIQTALKEFKLEREVVEKELLEK---VKHLENQIA-KSPAIDstrgD 1283
Cdd:PRK12704 25 RKKIAEAKIKEAEEEAKRILEeakkEAEAIKKEALLEAKEEIHKLRNEFEKELRERrneLQKLEKRLLqKEENLD----R 100
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 134304842 1284 SSSLVAELQEKLQEEKAKfLEQLEEQEKRKNEEMQNvrtsLIAEQQTNFNTV--LTREKMRKEnIINDLSDKLK 1355
Cdd:PRK12704 101 KLELLEKREEELEKKEKE-LEQKQQELEKKEEELEE----LIEEQLQELERIsgLTAEEAKEI-LLEKVEEEAR 168
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
970-1329 |
3.24e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.25 E-value: 3.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 970 DEKLQLLRAELQSLEQSHLKELEdtlQVRHIQEFEKV---MTDHRVSLEELKKENQQIINQIQESHAEIIQ---EKEKQL 1043
Cdd:PRK04863 512 AEQLQQLRMRLSELEQRLRQQQR---AERLLAEFCKRlgkNLDDEDELEQLQEELEARLESLSESVSEARErrmALRQQL 588
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1044 QELKLKVSDLSDTR----------CKLE----VELALKEAETDEIKILLEESRAQQKEtlKSLLEQETENLRTEISKLNQ 1109
Cdd:PRK04863 589 EQLQARIQRLAARApawlaaqdalARLReqsgEEFEDSQDVTEYMQQLLERERELTVE--RDELAARKQALDEEIERLSQ 666
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1110 KIQDNNENYQ--------VGLAELRTLMTIEKDQCISELI--SRHEeesnILKAELNKVTslhnQAFEIEKNLKEQI--I 1177
Cdd:PRK04863 667 PGGSEDPRLNalaerfggVLLSEIYDDVSLEDAPYFSALYgpARHA----IVVPDLSDAA----EQLAGLEDCPEDLylI 738
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1178 E--LQSKLDSELSALERQKDekITQQeekyeaiiqnlEKDRQKLVSS-------QEQDREQLIQKLNCEKDEAIQtalKE 1248
Cdd:PRK04863 739 EgdPDSFDDSVFSVEELEKA--VVVK-----------IADRQWRYSRfpevplfGRAAREKRIEQLRAEREELAE---RY 802
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1249 FKLEREVVEKELLekVKHLENQIAKSPAIdSTRGDSSSLVAELQEKLQEEKAKfLEQLEEQEKRKNEEMQNVRTSLIAEQ 1328
Cdd:PRK04863 803 ATLSFDVQKLQRL--HQAFSRFIGSHLAV-AFEADPEAELRQLNRRRVELERA-LADHESQEQQQRSQLEQAKEGLSALN 878
|
.
gi 134304842 1329 Q 1329
Cdd:PRK04863 879 R 879
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
948-1307 |
3.59e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 41.43 E-value: 3.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 948 IKELKQSREIVLEDLKKLHvendEKLQLLRAELQSLEQShLKELEDTLQVRHIQefekvmtdhrvsLEELKKENQQIINQ 1027
Cdd:COG4372 26 IAALSEQLRKALFELDKLQ----EELEQLREELEQAREE-LEQLEEELEQARSE------------LEQLEEELEELNEQ 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1028 IQESHAEIIQEKEkQLQELKLKVSDLSDTRCKLEVELALKEAETDEIKILLEESRAQQKETlksllEQETENLRTEISKL 1107
Cdd:COG4372 89 LQAAQAELAQAQE-ELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAER-----EEELKELEEQLESL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1108 NQKIQDNNENYQvglaelrtlmtiekdqciSELISRHEEESNILKAELNKVTSLHNQAFEIEKNLKEQIIELQSKLDSEL 1187
Cdd:COG4372 163 QEELAALEQELQ------------------ALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAK 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1188 SALERQKDEKITQQEEKYEAIIQNLEKDRQKLVSSQEQDREQLIQKLNCEKDEAIQTALKEFKLEREVVEKELLEKVKHL 1267
Cdd:COG4372 225 DSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNL 304
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 134304842 1268 ENQIAKSPAIDSTRGDSSSLVAELQEKLQEEKAKFLEQLE 1307
Cdd:COG4372 305 AALSLIGALEDALLAALLELAKKLELALAILLAELADLLQ 344
|
|
| DUF4659 |
pfam15558 |
Domain of unknown function (DUF4659); This family of proteins is found in eukaryotes. Proteins ... |
929-1270 |
4.11e-03 |
|
Domain of unknown function (DUF4659); This family of proteins is found in eukaryotes. Proteins in this family are typically between 427 and 674 amino acids in length. There are two completely conserved residues (D and I) that may be functionally important.
Pssm-ID: 464768 [Multi-domain] Cd Length: 374 Bit Score: 41.56 E-value: 4.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 929 EKDQKLLEMENIMHSQNCEIKELKQSREIVLEDLKKLhvENDEKLQLLRAELQSLEQShlkeledtlQVRHIQEFEKVMT 1008
Cdd:pfam15558 4 ERDRKIAALMLARHKEEQRMRELQQQAALAWEELRRR--DQKRQETLERERRLLLQQS---------QEQWQAEKEQRKA 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1009 dhRVSLEELKKENQQIINQIQ--ESHAEIIQEKEKQLQElKLKVSDLSDTRCKLEVELALKEAETdeikiLLEESRAQQK 1086
Cdd:pfam15558 73 --RLGREERRRADRREKQVIEkeSRWREQAEDQENQRQE-KLERARQEAEQRKQCQEQRLKEKEE-----ELQALREQNS 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1087 ETLKSLLEQETENLRTEISKLNQKIQDNNENYQVGLAELRTLMtiEKDQCISELISRHEEESNILKAELNKVTSLHNQAF 1166
Cdd:pfam15558 145 LQLQERLEEACHKRQLKEREEQKKVQENNLSELLNHQARKVLV--DCQAKAEELLRRLSLEQSLQRSQENYEQLVEERHR 222
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1167 EI-EKNLKEQIIELQSKLDSELSALERQKDEKITQQEEKyeaiiQNLEKDRQkLVSSQEQDREQLIQKLNcekdeaiqta 1245
Cdd:pfam15558 223 ELrEKAQKEEEQFQRAKWRAEEKEEERQEHKEALAELAD-----RKIQQARQ-VAHKTVQDKAQRARELN---------- 286
|
330 340
....*....|....*....|....*
gi 134304842 1246 lkefkLEREVVEKELLEKVKHLENQ 1270
Cdd:pfam15558 287 -----LEREKNHHILKLKVEKEEKC 306
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
958-1121 |
4.39e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 41.74 E-value: 4.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 958 VLEDLKKLHVENDEKLQLLRAELQSLEqshlKELEDtlQVRHIQEFEKvmtdhrvSLEELKKENQQIINQIQESHAEIIQ 1037
Cdd:PRK00409 503 IIEEAKKLIGEDKEKLNELIASLEELE----RELEQ--KAEEAEALLK-------EAEKLKEELEEKKEKLQEEEDKLLE 569
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1038 EKEKQLQElklkvsdlsdtrcklevelALKEAeTDEIKILLEESRAQQKETLKSLLEQETENLRTEISKLNQ-------K 1110
Cdd:PRK00409 570 EAEKEAQQ-------------------AIKEA-KKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEkkekkkkK 629
|
170
....*....|.
gi 134304842 1111 IQDNNENYQVG 1121
Cdd:PRK00409 630 QKEKQEELKVG 640
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
860-1189 |
4.86e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 41.42 E-value: 4.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 860 KEKHQKELLSLKNEYEGKLDGLIKETEENENKIKKLKGELVCLEEVLQNKDNEFALVKHEKEAVICLQNEKDQKLLEMEN 939
Cdd:pfam07888 57 REKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDALLAQRAAHEARIRELEE 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 940 IMHSqnceIKELKQSREIVLEDLK--------KLHVENDEKLQL-------------LRAELQSLEQSHLKELEDTLQvr 998
Cdd:pfam07888 137 DIKT----LTQRVLERETELERMKerakkagaQRKEEEAERKQLqaklqqteeelrsLSKEFQELRNSLAQRDTQVLQ-- 210
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 999 hIQEFEKVMTDHRVSLEELKKENQQIINQIQeSHAEIIQEKEKQLQELKLKVSDLSDTRCKLEVELALKEAETDEIKILL 1078
Cdd:pfam07888 211 -LQDTITTLTQKLTTAHRKEAENEALLEELR-SLQERLNASERKVEGLGEELSSMAAQRDRTQAELHQARLQAAQLTLQL 288
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1079 EESRAQQKETlKSLLEQETENL-------RTEISKLNQKIQDNNENYQVGLAE---LRTLMTIEKDqCISELISRHEEES 1148
Cdd:pfam07888 289 ADASLALREG-RARWAQERETLqqsaeadKDRIEKLSAELQRLEERLQEERMErekLEVELGREKD-CNRVQLSESRREL 366
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 134304842 1149 NILKAELNKVTSLHNQAFEIEKNLKEQIIELQSKLDSELSA 1189
Cdd:pfam07888 367 QELKASLRVAQKEKEQLQAEKQELLEYIRQLEQRLETVADA 407
|
|
| PTZ00440 |
PTZ00440 |
reticulocyte binding protein 2-like protein; Provisional |
848-1367 |
5.06e-03 |
|
reticulocyte binding protein 2-like protein; Provisional
Pssm-ID: 240419 [Multi-domain] Cd Length: 2722 Bit Score: 41.74 E-value: 5.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 848 IEKVKCSLEITLKEKHQKELLSLKNEYEGKLDGLIKETEENENKIKKLKgelvcleEVLQNKDNEFALVKHEKEAviclq 927
Cdd:PTZ00440 791 NKENKISNDINILKENKKNNQDLLNSYNILIQKLEAHTEKNDEELKQLL-------QKFPTEDENLNLKELEKEF----- 858
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 928 NEKDQKLlemENIMHSQNCEIKElkqsreivLEDLKKLHVENDEKlqllRAELQSLEqsHLKELEDTLQVRHIQEFEKVM 1007
Cdd:PTZ00440 859 NENNQIV---DNIIKDIENMNKN--------INIIKTLNIAINRS----NSNKQLVE--HLLNNKIDLKNKLEQHMKIIN 921
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1008 TDHRVSLEE-------LKKENQQIINQIQESHaeiiqekekqLQELKLKVSDLsdtrckLEVELALKEAETDEIKILLEE 1080
Cdd:PTZ00440 922 TDNIIQKNEklnllnnLNKEKEKIEKQLSDTK----------INNLKMQIEKT------LEYYDKSKENINGNDGTHLEK 985
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1081 SRAQQKETlkSLLEQETENLRTEISKLNQKIQDNNENYQVGLAELRTLMTIEKDQCISELISRHEEESNILKAELNKVTS 1160
Cdd:PTZ00440 986 LDKEKDEW--EHFKSEIDKLNVNYNILNKKIDDLIKKQHDDIIELIDKLIKEKGKEIEEKVDQYISLLEKMKTKLSSFHF 1063
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1161 lhNQAFEIEKN--LKEQIIELQSKLDSELSALErQKDEKITQQEEKYEAIIQNLEKDRQKLVSSQEQDREQLIQKLncek 1238
Cdd:PTZ00440 1064 --NIDIKKYKNpkIKEEIKLLEEKVEALLKKID-ENKNKLIEIKNKSHEHVVNADKEKNKQTEHYNKKKKSLEKIY---- 1136
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1239 dEAIQTALKEfkLEREVVEKELLEKVKHLENQIAKspaidstrgdssSLVAELQEKLQEEKAKFLEQLEEQEKRKnEEMQ 1318
Cdd:PTZ00440 1137 -KQMEKTLKE--LENMNLEDITLNEVNEIEIEYER------------ILIDHIVEQINNEAKKSKTIMEEIESYK-KDID 1200
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|...
gi 134304842 1319 NVRTSLIAEQQ---TNFN-TVLTREKMRKENIINDLSDKLKSTMQQQERDKDL 1367
Cdd:PTZ00440 1201 QVKKNMSKERNdhlTTFEyNAYYDKATASYENIEELTTEAKGLKGEANRSTNV 1253
|
|
| AAA_13 |
pfam13166 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
1019-1191 |
5.11e-03 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease.
Pssm-ID: 463796 [Multi-domain] Cd Length: 712 Bit Score: 41.58 E-value: 5.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1019 KENQQIINQIQESHAEIIQEKEKQLQELKlKVSDLSDTR--CKLEVELALKEAET-----DEIKILLEESRAQ--QKETL 1089
Cdd:pfam13166 279 DEFTEFQNRLQKLIEKVESAISSLLAQLP-AVSDLASLLsaFELDVEDIESEAEVlnsqlDGLRRALEAKRKDpfKSIEL 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1090 KSLLEqETENLRTEISKLNQKIQDNNE---NYQVGLAELRTLmtIEKDQcISELISRHEEESNILKAELNKVTSLHNQAF 1166
Cdd:pfam13166 358 DSVDA-KIESINDLVASINELIAKHNEitdNFEEEKNKAKKK--LRLHL-VEEFKSEIDEYKDKYAGLEKAINSLEKEIK 433
|
170 180
....*....|....*....|....*...
gi 134304842 1167 EIE---KNLKEQIIELQSKLDSELSALE 1191
Cdd:pfam13166 434 NLEaeiKKLREEIKELEAQLRDHKPGAD 461
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
887-1394 |
5.14e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 41.58 E-value: 5.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 887 ENENKIKKLKGELVCLEEVLQNKDNEFALVKHEkeaviCLQNEkdqklLEMENIMHSQNC---------EIKELKQSREI 957
Cdd:TIGR01612 331 ESEGEQGHIINKLIFLEKEFEDTIHKSDIYKDE-----CLSNH-----LFMEDYLKDDKIspyyyefleEIKKIAKQRAI 400
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 958 VLEDLKKLhvendEKLQLLRAELQSLEQSHLKELEdtlqvrhiqefekvmtdhRVSLEELKKENQQIINqiqeshaEIIQ 1037
Cdd:TIGR01612 401 FFYNAKKL-----KHLEILYKHQEDILNNFHKTIE------------------RLIFEKPDPNNNNIFK-------DDFD 450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1038 EKEKQLQELKLKvsdLSDTRCkleVELALKEAETDEIKILLEESrAQQKETLKSLLEQETEnlrteisklNQKIQDNNEN 1117
Cdd:TIGR01612 451 EFNKPIPKSKLK---ALEKRF---FEIFEEEWGSYDIKKDIDEN-SKQDNTVKLILMRMKD---------FKDIIDFMEL 514
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1118 YQVGLAELRTLMTIEKDQCISELIsrHEEESNILKAELNKVTSLHNQAFEIEKNLKEQ---IIELQSKLDSELSALERQK 1194
Cdd:TIGR01612 515 YKPDEVPSKNIIGFDIDQNIKAKL--YKEIEAGLKESYELAKNWKKLIHEIKKELEEEnedSIHLEKEIKDLFDKYLEID 592
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1195 DEKITQQEEKYEAiiqnleKDRQKLVSSQEQ------DREQLIQKLNCEKDEAIQTAlkEFKLEREVVEKE-LLEKVKHL 1267
Cdd:TIGR01612 593 DEIIYINKLKLEL------KEKIKNISDKNEyikkaiDLKKIIENNNAYIDELAKIS--PYQVPEHLKNKDkIYSTIKSE 664
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1268 ENQIAKSPaIDSTRGDSSSLVAELQEKLQEEKAKfLEQLEEQEKRKNEEMQNVRTSLIAEQ----QTNFNTVLTREKMRK 1343
Cdd:TIGR01612 665 LSKIYEDD-IDALYNELSSIVKENAIDNTEDKAK-LDDLKSKIDKEYDKIQNMETATVELHlsniENKKNELLDIIVEIK 742
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 134304842 1344 ENIINDLSDKLKSTMQQQERDKDLIESLSEDRARLLEEKKKLEEEVSKLRS 1394
Cdd:TIGR01612 743 KHIHGEINKDLNKILEDFKNKEKELSNKINDYAKEKDELNKYKSKISEIKN 793
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1014-1209 |
5.52e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.30 E-value: 5.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1014 LEELKKENQQIInqiQESHAEIIQEKEKQLQELKLKVSDLsdtrcKLEVELALKEAEtDEIKILleESRAQQKEtlkSLL 1093
Cdd:PRK12704 33 IKEAEEEAKRIL---EEAKKEAEAIKKEALLEAKEEIHKL-----RNEFEKELRERR-NELQKL--EKRLLQKE---ENL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1094 EQETENLRTEISKLNQKIQDNNENYQvglaelrtlmTIEKDQciSELISRHEEEsnilKAELNKVTSLhnQAFEIeknlK 1173
Cdd:PRK12704 99 DRKLELLEKREEELEKKEKELEQKQQ----------ELEKKE--EELEELIEEQ----LQELERISGL--TAEEA----K 156
|
170 180 190
....*....|....*....|....*....|....*...
gi 134304842 1174 EQIIE-LQSKLDSELSALERQKDEKITQQEEKY-EAII 1209
Cdd:PRK12704 157 EILLEkVEEEARHEAAVLIKEIEEEAKEEADKKaKEIL 194
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
953-1262 |
5.66e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.16 E-value: 5.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 953 QSREIVLEDLKKLHVENDEKLQLLRaelqslEQSHLKELEDTLQVRHIQEfEKVMTdhrVSLE-ELKKENQQIINQIqes 1031
Cdd:COG3206 91 KSRPVLERVVDKLNLDEDPLGEEAS------REAAIERLRKNLTVEPVKG-SNVIE---ISYTsPDPELAAAVANAL--- 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1032 hAEIIQEkekqlQELKLKVSDLSDTRCKLEVELA-----LKEAEtDEIKILLEESRAQQKETLKSLLEQETENLRTEISK 1106
Cdd:COG3206 158 -AEAYLE-----QNLELRREEARKALEFLEEQLPelrkeLEEAE-AALEEFRQKNGLVDLSEEAKLLLQQLSELESQLAE 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1107 LNQKIQDNNENYQVGLAELRTLMTIEKDQCISELISRHEEESNILKAELNkvtslhnqafEIEKNLKE---QIIELQSKL 1183
Cdd:COG3206 231 ARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELA----------ELSARYTPnhpDVIALRAQI 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1184 DselsALERQKDEKITQQEEKYEAIIQNLEKDRQKLVSSQEQDREQlIQKLNcekdeAIQTALKEfkLEREV-VEKELLE 1262
Cdd:COG3206 301 A----ALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEAR-LAELP-----ELEAELRR--LEREVeVARELYE 368
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
949-1271 |
5.99e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.48 E-value: 5.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 949 KELKQSREIvLEDLKKLHVENDEKLQLLRAELQSLEQSHlKELEDTLQ-----VRHIQEFEKvmtdHRVSLEEL--KKEN 1021
Cdd:PRK04863 293 RELYTSRRQ-LAAEQYRLVEMARELAELNEAESDLEQDY-QAASDHLNlvqtaLRQQEKIER----YQADLEELeeRLEE 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1022 QqiiNQIQESHAEIIQEKEKQLQELKLKV----SDLSDTRCKLEVE-----------LALKEAET---------DEIKIL 1077
Cdd:PRK04863 367 Q---NEVVEEADEQQEENEARAEAAEEEVdelkSQLADYQQALDVQqtraiqyqqavQALERAKQlcglpdltaDNAEDW 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1078 LEESRAQQKETLKSLLEQET-----ENLRTEISKLNQKIQ------DNNENYQVGLAELRTLMT--IEKDQC------IS 1138
Cdd:PRK04863 444 LEEFQAKEQEATEELLSLEQklsvaQAAHSQFEQAYQLVRkiagevSRSEAWDVARELLRRLREqrHLAEQLqqlrmrLS 523
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1139 ELISRHEEESNI--LKAELNKVTSLHNQAFEIEKNLKEQIIELQSKLDSELSAL-ERQKDEKitQQEEKYEAIIQNLEKD 1215
Cdd:PRK04863 524 ELEQRLRQQQRAerLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEArERRMALR--QQLEQLQARIQRLAAR 601
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 134304842 1216 RQKLVSSQ---EQDREQLIQKL--NCEKDEAIQTALKEFKlEREVVEKELLEKVKHLENQI 1271
Cdd:PRK04863 602 APAWLAAQdalARLREQSGEEFedSQDVTEYMQQLLERER-ELTVERDELAARKQALDEEI 661
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
854-1104 |
6.20e-03 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 40.66 E-value: 6.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 854 SLEITLKEKHqKELLSLKNEYEGKLDGLIKE----TEENENKIKKLKGELVCLEEVLQNKDNEFALVKHEKEAVICLQNE 929
Cdd:COG1340 8 SSLEELEEKI-EELREEIEELKEKRDELNEElkelAEKRDELNAQVKELREEAQELREKRDELNEKVKELKEERDELNEK 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 930 KDQKLLEMENImHSQNCEIKELKQSREIVLEDLKKL-----------HVEND--EKLQLLRAELQSLEQSHLKEledtlq 996
Cdd:COG1340 87 LNELREELDEL-RKELAELNKAGGSIDKLRKEIERLewrqqtevlspEEEKElvEKIKELEKELEKAKKALEKN------ 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 997 vRHIQEFEKVMTDHRVSLEELKKENQQIINQIQESHAEIIQEKE------KQLQELKLKVSDLSDTRCKLEVELALKEAE 1070
Cdd:COG1340 160 -EKLKELRAELKELRKEAEEIHKKIKELAEEAQELHEEMIELYKeadelrKEADELHKEIVEAQEKADELHEEIIELQKE 238
|
250 260 270
....*....|....*....|....*....|....
gi 134304842 1071 TDEIKILLEESRAQQKETLKSLLEQETENLRTEI 1104
Cdd:COG1340 239 LRELRKELKKLRKKQRALKREKEKEELEEKAEEI 272
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
937-1470 |
6.48e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 41.25 E-value: 6.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 937 MENIMHSQNCEIKE-LKQSREIVLEDLKKLHVENDEKLQLLRAELQSLEqSHLKELEDTLQvrhiqEFEKVMTDHRVSLE 1015
Cdd:pfam05483 50 LEQVANSGDCHYQEgLKDSDFENSEGLSRLYSKLYKEAEKIKKWKVSIE-AELKQKENKLQ-----ENRKIIEAQRKAIQ 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1016 ELKKENQQIINQIQEShaeiIQEKEKQLQElklkvSDLSDTRCKLEVELALKEAE-TDEIKILLEESRA----QQKETLK 1090
Cdd:pfam05483 124 ELQFENEKVSLKLEEE----IQENKDLIKE-----NNATRHLCNLLKETCARSAEkTKKYEYEREETRQvymdLNNNIEK 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1091 SLLEQETENLRTEISKLNQ--KIQDNNENYQVGLAELRTLMTIEKDQCISELISRHEEESN------ILKAELNKVTSLH 1162
Cdd:pfam05483 195 MILAFEELRVQAENARLEMhfKLKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKmkdltfLLEESRDKANQLE 274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1163 NQAFEIEKNLKeQIIELQSKLDSELSALERQKDEKITQQeekyeaiiQNLEKDRQ---KLVSSQEQDREQLIQKLNCEKd 1239
Cdd:pfam05483 275 EKTKLQDENLK-ELIEKKDHLTKELEDIKMSLQRSMSTQ--------KALEEDLQiatKTICQLTEEKEAQMEELNKAK- 344
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1240 EAIQTALKEFKLEREVVEKELLEKVKHLENQiakspaidstRGDSSSLVAELQEKLQEekakfLEQLEEQEKRKNEEMQN 1319
Cdd:pfam05483 345 AAHSFVVTEFEATTCSLEELLRTEQQRLEKN----------EDQLKIITMELQKKSSE-----LEEMTKFKNNKEVELEE 409
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1320 VRTsLIAEQQTnfntvLTREKMRKENIINDLSDKLKS-TMQQQERDKDlIESLSEDRARLLEEKKKLEEEVSKLRsssfv 1398
Cdd:pfam05483 410 LKK-ILAEDEK-----LLDEKKQFEKIAEELKGKEQElIFLLQAREKE-IHDLEIQLTAIKTSEEHYLKEVEDLK----- 477
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 134304842 1399 pspyvaTAPELYGACAPELPGESDRSAVETADEGRVDSAMETSMMSVQENIHMLSEEKQRIMLLERTLQLKE 1470
Cdd:pfam05483 478 ------TELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKE 543
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
843-1006 |
7.87e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.91 E-value: 7.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 843 EIRNIIEKVKcsLEITLKEKHQKELLSLKNEYEGKLDGLIKETEENENKIKKLKGELVCLEEVLQN-KDN-EFALVKHEK 920
Cdd:COG1579 21 RLEHRLKELP--AELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNvRNNkEYEALQKEI 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 921 EAVICLQNEKDQKLLEMENIMHSQNCEIKELKQSREIVLEDLKKLHVENDEKLQLLRAELQSLEQShLKELEDTLQVRHI 1000
Cdd:COG1579 99 ESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAE-REELAAKIPPELL 177
|
....*.
gi 134304842 1001 QEFEKV 1006
Cdd:COG1579 178 ALYERI 183
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
903-1088 |
8.14e-03 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 40.39 E-value: 8.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 903 EEVLQNKDNEFALVKHEKEavicLQNEKD-----QKLLEmeNIMHSQNCEIKELKQSREIVLEDLKKLHVEND---EKLQ 974
Cdd:smart00787 109 PDVKLLMDKQFQLVKTFAR----LEAKKMwyewrMKLLE--GLKEGLDENLEGLKEDYKLLMKELELLNSIKPklrDRKD 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 975 LLRAELQSLEQsHLKELEDTLQvrhiqefekvmTDHRVSLEELKKENQQIINQIQEshaeiIQEKEKQLQELKLKVSDLS 1054
Cdd:smart00787 183 ALEEELRQLKQ-LEDELEDCDP-----------TELDRAKEKLKKLLQEIMIKVKK-----LEELEEELQELESKIEDLT 245
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 134304842 1055 DTrcKLEVELALKEAET----------DEIKILLEESRAQQKET 1088
Cdd:smart00787 246 NK--KSELNTEIAEAEKkleqcrgftfKEIEKLKEQLKLLQSLT 287
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
1014-1377 |
8.31e-03 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 40.61 E-value: 8.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1014 LEELKK-----ENQQIINQIQESHAEIIQEKEKQLQELKLKVSDLSDTRCKLEVELALKEAEtdEIKILLEESRAQQKET 1088
Cdd:pfam06160 31 LSKVKKlnltgETQEKFEEWRKKWDDIVTKSLPDIEELLFEAEELNDKYRFKKAKKALDEIE--ELLDDIEEDIKQILEE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1089 LKSLLEQETEN------LRTEISKLNQKIQDNNENYQVGLAELrtlmtiekdqciselisrhEEESNILKAELNKVTSL- 1161
Cdd:pfam06160 109 LDELLESEEKNreeveeLKDKYRELRKTLLANRFSYGPAIDEL-------------------EKQLAEIEEEFSQFEELt 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1162 ----HNQAFEIEKNLKEQIIELQSKLDSELSALERQKDEkITQQEEKYEAIIQNLEKDRQKLvssQEQDREQLIQKLNCE 1237
Cdd:pfam06160 170 esgdYLEAREVLEKLEEETDALEELMEDIPPLYEELKTE-LPDQLEELKEGYREMEEEGYAL---EHLNVDKEIQQLEEQ 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1238 KDEAIQtALKEFKLER-EVVEKELLEKVKHLENQIAKspaidstrgdssslvaELQ-----EKLQEEKAKFLEQLEEQEK 1311
Cdd:pfam06160 246 LEENLA-LLENLELDEaEEALEEIEERIDQLYDLLEK----------------EVDakkyvEKNLPEIEDYLEHAEEQNK 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1312 RKNEEMQNVRTS------------LIAEQQTNFNTVLTREKMRKEN-------IINDLSDKLKSTMQQQERDKDLIESL- 1371
Cdd:pfam06160 309 ELKEELERVQQSytlnenelervrGLEKQLEELEKRYDEIVERLEEkevayseLQEELEEILEQLEEIEEEQEEFKESLq 388
|
410
....*....|
gi 134304842 1372 ----SEDRAR 1377
Cdd:pfam06160 389 slrkDELEAR 398
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
789-1113 |
8.73e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 40.98 E-value: 8.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 789 GDHTSLNVQLERCRVVAQDSHFSIQTIKEDLCHFRTFVQKEQcDFSNSLKCTAVEIRNIIEKVKCSLEITLK--EKHQKE 866
Cdd:pfam12128 576 GELNLYGVKLDLKRIDVPEWAASEEELRERLDKAEEALQSAR-EKQAAAEEQLVQANGELEKASREETFARTalKNARLD 654
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 867 LLSLKNEYEGKLDGLIKETEEN----ENKIKKLKGELVCLEEVLQnkdnefALVKHEKEAVICLQNEKDQKLLEMENIMH 942
Cdd:pfam12128 655 LRRLFDEKQSEKDKKNKALAERkdsaNERLNSLEAQLKQLDKKHQ------AWLEEQKEQKREARTEKQAYWQVVEGALD 728
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 943 SQNCEIKELKQSREIVLE------------DLKKLHVENDeKLQLLRAELQSLEQShlkeLEDTLQVRHiqefeKVMTDH 1010
Cdd:pfam12128 729 AQLALLKAAIAARRSGAKaelkaletwykrDLASLGVDPD-VIAKLKREIRTLERK----IERIAVRRQ-----EVLRYF 798
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134304842 1011 RVSLEELKKENQQIINQIqeshAEIIQEKEKQLQELKLKVSDLSDTRCKLEVELALKEAETDEIKILLEESRAQQKETLK 1090
Cdd:pfam12128 799 DWYQETWLQRRPRLATQL----SNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMSKLAT 874
|
330 340
....*....|....*....|...
gi 134304842 1091 SLLEQETENLRTEISKLNQKIQD 1113
Cdd:pfam12128 875 LKEDANSEQAQGSIGERLAQLED 897
|
|
| |
