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Conserved domains on  [gi|134303106|ref|YP_001122862|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Macrochelys temminckii]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 1.25e-146

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 417.30  E-value: 1.25e-146
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106   1 MTPYTNMIIMPSLIMGPILTISSSHWILAWTGLEISTLAVIPLMAQQHHPRAVEATTKYFLIQAAASTLILFSSITNAWT 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106  81 LGQWDITQMSNTISCTILTTALAIKLGLAPFHFWLPEVLQGTTMTMAMILTTWQKLAPLSLLVMTSQSLNTLLLLMLGLM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMITILTLSTKLMLITFYMYVIITATMFIMMKLLETNKISTTMTSWTKLPTL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 241 NTMMMLTLMSLAGLPPLTGFMPKWLILQELAKQNMLIIAVLLAMSSLLSLFFYLRISYYSTITLPPSPTSSSKQWRHKMN 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 134303106 321 QKPYLAMLTVLSMTLIPITPALMTTT 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 1.25e-146

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 417.30  E-value: 1.25e-146
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106   1 MTPYTNMIIMPSLIMGPILTISSSHWILAWTGLEISTLAVIPLMAQQHHPRAVEATTKYFLIQAAASTLILFSSITNAWT 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106  81 LGQWDITQMSNTISCTILTTALAIKLGLAPFHFWLPEVLQGTTMTMAMILTTWQKLAPLSLLVMTSQSLNTLLLLMLGLM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMITILTLSTKLMLITFYMYVIITATMFIMMKLLETNKISTTMTSWTKLPTL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 241 NTMMMLTLMSLAGLPPLTGFMPKWLILQELAKQNMLIIAVLLAMSSLLSLFFYLRISYYSTITLPPSPTSSSKQWRHKMN 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 134303106 321 QKPYLAMLTVLSMTLIPITPALMTTT 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-299 3.49e-27

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 111.36  E-value: 3.49e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106  14 IMGPILTISSSHWILAWTGLEISTLAVIPLMA-QQHHPRAVEATTKYFLIQAAASTLILF--------------SSITNA 78
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygatgslnlAGIAAA 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106  79 wtLGQWDITQMSNTISCTILTTALAIKLGLAPFHFWLPEVLQGTTMTMAMILTTWQKLAPLSLLV-------MTSQSLNT 151
Cdd:COG1007  192 --LAAGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLrllveafPGLAADWQ 269

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 152 LLLLMLGLMSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMITILTLSTKLML--ITFYM--YVIITATMFIMMKLLET-NK 226
Cdd:COG1007  270 LLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLLSRkGG 349

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 134303106 227 ISTTMTSWTKL----PTLNTMMMLTLMSLAGLPPLTGFMPKWLILQELAKQNMLIIAVLLAMSSLLSLFFYLRISYY 299
Cdd:COG1007  350 EAEEIEDLAGLarrsPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVKA 426
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 4.58e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 102.39  E-value: 4.58e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106   23 SSHWILAWTGLEISTLAVIPLMA-QQHHPRAVEATTKYFLIQAAASTLILFSSITNAWTLGQWDITQMSNTISCTI---- 97
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106   98 -------LTTALAIKLGLAPFHFWLPEVLQGTTMTMAMILT-TWQKLAPL-----SLLVMTSQSLNTLLLLMLGLMSTLI 164
Cdd:pfam00361  81 llllfllILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYglirrSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106  165 GGWGGLNQTQLRKIMAFSSIAHLGWMITILTLST----KLMLITFYMYVIITATMFIMMKLLETNKISTTMTS-----WT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTiygiQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRdygglAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 134303106  236 KLPTLNTMMMLTLMSLAGLPPLTGFMPKWLILQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 8-296 9.05e-23

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 98.48  E-value: 9.05e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106    8 IIMPSLIMGPILTISSSHWILAWTGLEISTLAVIPLMA-QQHHPRAVEATTKYFLIQAAASTLILF--------SSITNA 78
Cdd:TIGR01770 106 ILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFgisliygfTGSLNF 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106   79 WTLGQWDITQMSNTISCTI----LTTALAIKLGLAPFHFWLPEVLQGTTMTMAMILTTWQKLAPLSLLV-------MTSQ 147
Cdd:TIGR01770 186 EDLLLFLSNGMLNISLLLLgivlILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFS 265

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106  148 SLNTLLLLMLGLMSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMITILTLSTKL----MLITFYMYVIITA---TMFIMMK 220
Cdd:TIGR01770 266 EAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikaVLFYIFIYALMSLgafGVLSLLR 345

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 134303106  221 LLETNKIST--TMTSWTKL-PTLNTMMMLTLMSLAGLPPLTGFMPKWLILQELAKQNMLIIAVLLAMSSLLSLFFYLRI 296
Cdd:TIGR01770 346 SYKDEWIEYisDFAGLFKTnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 1.25e-146

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 417.30  E-value: 1.25e-146
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106   1 MTPYTNMIIMPSLIMGPILTISSSHWILAWTGLEISTLAVIPLMAQQHHPRAVEATTKYFLIQAAASTLILFSSITNAWT 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106  81 LGQWDITQMSNTISCTILTTALAIKLGLAPFHFWLPEVLQGTTMTMAMILTTWQKLAPLSLLVMTSQSLNTLLLLMLGLM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMITILTLSTKLMLITFYMYVIITATMFIMMKLLETNKISTTMTSWTKLPTL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 241 NTMMMLTLMSLAGLPPLTGFMPKWLILQELAKQNMLIIAVLLAMSSLLSLFFYLRISYYSTITLPPSPTSSSKQWRHKMN 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 134303106 321 QKPYLAMLTVLSMTLIPITPALMTTT 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-344 1.69e-137

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 394.17  E-value: 1.69e-137
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106   1 MTPYTNMIIMPSLIMGPILTISSSHWILAWTGLEISTLAVIPLMAQQHHPRAVEATTKYFLIQAAASTLILFSSITNAWT 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106  81 LGQWDITQMSNTISCTILTTALAIKLGLAPFHFWLPEVLQGTTMTMAMILTTWQKLAPLSLLVMTSQSLNTLLLLMLGLM 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPTNPTLLITLGLTS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 161 STlIGGWGGLNQTQLRKIMAFSSIAHLGWMITILTLSTKLMLITFYMYVIITATMFIMMKLLETNKISTTMTSWTKLPTL 240
Cdd:MTH00135 161 TL-VGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 241 NTMMMLTLMSLAGLPPLTGFMPKWLILQELAKQNMLIIAVLLAMSSLLSLFFYLRISYYSTITLPPSPTSSSKQWRHKMN 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                        330       340
                 ....*....|....*....|....*
gi 134303106 321 QKPY-LAMLTVLSMTLIPITPALMT 344
Cdd:MTH00135 320 QLTLpLAISTTATLMLLPLTPAILA 344
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-344 3.83e-130

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 375.41  E-value: 3.83e-130
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106   1 MTPYTNMIIMPSLIMGPILTISSSHWILAWTGLEISTLAVIPLMAQQHHPRAVEATTKYFLIQAAASTLILFSSITNAWT 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106  81 LGQWDITQMSNTISCTILTTALAIKLGLAPFHFWLPEVLQGTTMTMAMILTTWQKLAPLSLLVMTSQSLNTLLLLMLGLM 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMITILTLSTKLMLITFYMYVIITATMFIMMKLLETNKISTTMTSWTKLPTL 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 241 NTMMMLTLMSLAGLPPLTGFMPKWLILQELAKQNMLIIAVLLAMSSLLSLFFYLRISYYSTITLPPSPTSSSKQWRHKMN 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                        330       340
                 ....*....|....*....|....
gi 134303106 321 QKPYLAMLTVLSMTLIPITPALMT 344
Cdd:MTH00070 321 TNNLLSLTIILSLMLLPITPTILN 344
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-346 6.29e-109

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 321.80  E-value: 6.29e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106   1 MTPYTNMIIMPSLIMGPILTISSSHWILAWTGLEISTLAVIPLMAQQHHPRAVEATTKYFLIQAAASTLILFSSITNAWT 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106  81 LGQWDITQMSNTISCTILTTALAIKLGLAPFHFWLPEVLQGTTMTMAMILTTWQKLAPLSLLVMTSQSLNTLLLLMLGLM 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMITILTLSTKLMLITFYMYVIITATMFIMMKLLETNKISTTMTSWTKLPTL 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 241 NTMMMLTLMSLAGLPPLTGFMPKWLILQELAKQNMLIIAVLLAMSSLLSLFFYLRISYYSTITLPPSPTSSSKQWRHK-M 319
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFEnT 320

                        330       340
                 ....*....|....*....|....*..
gi 134303106 320 NQKPYLAMLTVLSMTLIPITPALMTTT 346
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-346 2.11e-97

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 292.26  E-value: 2.11e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106   1 MTPYTNMIIMPSLIMGPILTISSSHWILAWTGLEISTLAVIPLMAQQHHPRAVEATTKYFLIQAAASTLILFSSITNAWT 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106  81 LGQWDITQMSNTISCTILTTALAIKLGLAPFHFWLPEVLQGTTMTMAMILTTWQKLAPLSLLVMTSQSLNTLLLLMLGLM 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMITILTLSTKLMLITFYMYVIITATMFIMMKLLETNKISTTMTSWTKLPTL 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 241 NTMMMLTLMSLAGLPPLTGFMPKWLILQELAKQNMLIIAVLLAMSSLLSLFFYLRISYYSTITLPPSPTSSSKQWRHKMN 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                        330       340
                 ....*....|....*....|....*.
gi 134303106 321 QKPYLAMLTVLSMTLIPITPALMTTT 346
Cdd:MTH00200 321 SNLLVGLLLLLSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 12-339 3.24e-86

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 263.71  E-value: 3.24e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106  12 SLIMGPILTISSSHWILAWTGLEISTLAVIPLMAQQHHPRAVEATTKYFLIQAAASTLILFSSITNAWTLGQWDITQMSN 91
Cdd:MTH00041  12 SIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPLN 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106  92 TISCTILTTALAIKLGLAPFHFWLPEVLQGTTMTMAMILTTWQKLAPLSLLVMTSQSLNTLLLLMLGLMSTLIGGWGGLN 171
Cdd:MTH00041  92 TLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGLN 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 172 QTQLRKIMAFSSIAHLGWMITILTLSTKLMLITFYMYVIITATMFIMMKLLETNKISTTMTSWTKLPTLNTMMMLTLMSL 251
Cdd:MTH00041 172 QTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILSL 251

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 252 AGLPPLTGFMPKWLILQELAKQNMLIIAVLLAMSSLLSLFFYLRISYYSTITLPPSPTSSSKQWRHKMNQKPY------L 325
Cdd:MTH00041 252 GGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNITVYgvilsiL 331

                        330
                 ....*....|....
gi 134303106 326 AMLTVLSMTLIPIT 339
Cdd:MTH00041 332 SSISILGLLLIPLF 345
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-338 1.08e-57

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 190.03  E-value: 1.08e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106   1 MTPYTNMIIMPSLIMGPILTISSSHWILAWTGLEISTLAVIPLMAQQHHPRAVEATTKYFLIQAAASTLILFSSITNAWt 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106  81 lgqwdITQMSNTISCTILTTALAIKLGLAPFHFWLPEVLQGTTMTMAMILTTWQKLAPLSLLvmtSQSLNTLLLLMLGLM 160
Cdd:MTH00160  81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILL---SYLINNNFIIIIIIL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMITILTLSTKLMLITFYMYVIITATMFIMMKLLETNKISTTMTSWTKLPTL 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 241 NTMMMLTLMSLAGLPPLTGFMPKWLILQELAKQNMLIIAVLLAMSSLLSLFFYLRISYYSTITLPPSPTSSSKQWRHKMN 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFS 312

                        330
                 ....*....|....*....
gi 134303106 321 QK-PYLAMLTVLSMTLIPI 338
Cdd:MTH00160 313 LIlNFLSFISLFGLILSSL 331
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 13-315 2.15e-53

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 178.54  E-value: 2.15e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106  13 LIMGPILTISSSHWILAWTGLEISTLAVIPLMAQQHHPRAVEATTKYFLIQAAASTLILFSSITNAWTLGQWDITqmsnt 92
Cdd:MTH00144  13 MVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSM----- 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106  93 iscTILTTALAIKLGLAPFHFWLPEVLQGTTMTMAMILTTWQKLAPLSLLVMTSQSLNTLLLLMLG-LMSTLIGGWGGLN 171
Cdd:MTH00144  88 ---SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLCVIsVLSALVGSIGGLN 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 172 QTQLRKIMAFSSIAHLGWMITILTLSTKLMLITFYMYVIITATMFIMMKLLETNKIStTMTSWTKLPTLNTMMMLTLMSL 251
Cdd:MTH00144 165 QTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMK-DLGSLKPSYKTGLSIISLLLSL 243

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 134303106 252 AGLPPLTGFMPKWLILQELAKQNMLIIAVLLAMSSLLSLFFYLRISYYSTITLPPSPTSSSKQW 315
Cdd:MTH00144 244 GGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKV 307
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 5-305 1.28e-43

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 153.01  E-value: 1.28e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106   5 TNMIIMPSLIMGPILTISSSHWILAWTGLEISTLAVIPLMAQQHHPRAVEATTKYFLIQAAASTLILFSSITnawtlgQW 84
Cdd:MTH00011   7 TMFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM------MW 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106  85 DITQMSNTISCTILTTALAIKLGLAPFHFWLPEVLQGTTMTMAMILTTWQKLAPLSLLVMTSQSLNTLLLLMLGLMSTLI 164
Cdd:MTH00011  81 SFPSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALA 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 165 GGWGGLNQTQLRKIMAFSSIAHLGWMITILTLSTKLMLITFYMYVIITATMFIMMKLLETNKISTTMTSWTKLPTLNTMM 244
Cdd:MTH00011 161 GGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSL 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 134303106 245 MLTLMSLAGLPPLTGFMPKWLILQELAKQNMLIIAVLLAMSSLLSLFFYLRISYYSTITLP 305
Cdd:MTH00011 241 FIMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYLSP 301
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 7-302 2.43e-39

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 141.73  E-value: 2.43e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106   7 MIIMPSLIMGPILTISSSHWILAWTGLEISTLAVIPLMAQQHHPRAVEATTKYFLIQAAASTLILFSSITNAWTLgqwdi 86
Cdd:MTH00197   1 FLFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL----- 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106  87 tqMSNTISCTILTTALAIKLGLAPFHFWLPEVLQGTTMTMAMILTTWQKLAPLSLLVMTSQSLNTLLLLMLGLMStlIGG 166
Cdd:MTH00197  76 --YLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFMGLLICSVLSSL--IGG 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 167 WGGLNQTQLRKIMAFSSIAHLGWMITILTLSTKLMLITFYMYVIITATMFIMMKLLETNKIStTMTSWTKLPTLNTM-MM 245
Cdd:MTH00197 152 IGGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLN-QQYSNPESMSSNLVfLG 230

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 134303106 246 LTLMSLAGLPPLTGFMPKWLILQELAKQNMLIIAVLLAMSSLLSLFFYLRISYYSTI 302
Cdd:MTH00197 231 LSFLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLI 287
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-296 3.02e-29

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 115.51  E-value: 3.02e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106  13 LIMGPILTISSSHWILAWTGLEISTLAVIPLMAQQHHP-RAVEATTKYFLIQAAASTLILFS-------------SITNA 78
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIAQNRGSgYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106  79 WTLGQWDITQMSNTISCTILTTALAIKLGLAPFHFWLPEVLQGTTMTMAMILTTWQKLAPLSLLVmtSQSLNTLLLLMLG 158
Cdd:MTH00196  82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 159 LMSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMITILTL----STKLMLITFYMYVIITATMFIMMKLLETNK--ISTTMT 232
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIgsfeSIQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSG 239

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 134303106 233 SWTKLPTLNTMMMLTLMSLAGLPPLTGFMPKWLILQELAKQNMLIIAVLLAMSSLLSLFFYLRI 296
Cdd:MTH00196 240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-299 3.49e-27

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 111.36  E-value: 3.49e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106  14 IMGPILTISSSHWILAWTGLEISTLAVIPLMA-QQHHPRAVEATTKYFLIQAAASTLILF--------------SSITNA 78
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygatgslnlAGIAAA 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106  79 wtLGQWDITQMSNTISCTILTTALAIKLGLAPFHFWLPEVLQGTTMTMAMILTTWQKLAPLSLLV-------MTSQSLNT 151
Cdd:COG1007  192 --LAAGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLrllveafPGLAADWQ 269

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 152 LLLLMLGLMSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMITILTLSTKLML--ITFYM--YVIITATMFIMMKLLET-NK 226
Cdd:COG1007  270 LLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLLSRkGG 349

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 134303106 227 ISTTMTSWTKL----PTLNTMMMLTLMSLAGLPPLTGFMPKWLILQELAKQNMLIIAVLLAMSSLLSLFFYLRISYY 299
Cdd:COG1007  350 EAEEIEDLAGLarrsPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVKA 426
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
10-296 4.23e-25

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 105.29  E-value: 4.23e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106  10 MPSLIM----GPILTISSSHWILAWTGLEISTLAVIPLMA-QQHHPRAVEATTKYFLIQAAASTLIL------------- 71
Cdd:PRK05777 105 FYLLVLfallGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLygmsllygatgsl 184

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106  72 -FSSITNAwtLGQWDITQMSNTISCTILTTALAIKLGLAPFHFWLPEVLQGTTMTMAMILTTWQKLAPLSLLV------- 143
Cdd:PRK05777 185 sFAGIAKA--LADGSGNSLLLLFGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLrllvvaf 262

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 144 MTSQSLNTLLLLMLGLMSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMITILTLSTKLML--ITFYM--YVIITATMFIMM 219
Cdd:PRK05777 263 GGLSEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYLlaYLFMTLGAFGVI 342

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 220 KLLETN-KISTTMTSWTKL----PTLNTMMMLTLMSLAGLPPLTGFMPKWLILQELAKQNMLIIAVLLAMSSLLSLFFYL 294
Cdd:PRK05777 343 SLLRRKgGEAESISDFAGLskrsPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYL 422


                 ..
gi 134303106 295 RI 296
Cdd:PRK05777 423 RV 424
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 4.58e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 102.39  E-value: 4.58e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106   23 SSHWILAWTGLEISTLAVIPLMA-QQHHPRAVEATTKYFLIQAAASTLILFSSITNAWTLGQWDITQMSNTISCTI---- 97
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106   98 -------LTTALAIKLGLAPFHFWLPEVLQGTTMTMAMILT-TWQKLAPL-----SLLVMTSQSLNTLLLLMLGLMSTLI 164
Cdd:pfam00361  81 llllfllILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYglirrSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106  165 GGWGGLNQTQLRKIMAFSSIAHLGWMITILTLST----KLMLITFYMYVIITATMFIMMKLLETNKISTTMTS-----WT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTiygiQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRdygglAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 134303106  236 KLPTLNTMMMLTLMSLAGLPPLTGFMPKWLILQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 8-296 9.05e-23

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 98.48  E-value: 9.05e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106    8 IIMPSLIMGPILTISSSHWILAWTGLEISTLAVIPLMA-QQHHPRAVEATTKYFLIQAAASTLILF--------SSITNA 78
Cdd:TIGR01770 106 ILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFgisliygfTGSLNF 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106   79 WTLGQWDITQMSNTISCTI----LTTALAIKLGLAPFHFWLPEVLQGTTMTMAMILTTWQKLAPLSLLV-------MTSQ 147
Cdd:TIGR01770 186 EDLLLFLSNGMLNISLLLLgivlILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFS 265

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106  148 SLNTLLLLMLGLMSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMITILTLSTKL----MLITFYMYVIITA---TMFIMMK 220
Cdd:TIGR01770 266 EAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikaVLFYIFIYALMSLgafGVLSLLR 345

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 134303106  221 LLETNKIST--TMTSWTKL-PTLNTMMMLTLMSLAGLPPLTGFMPKWLILQELAKQNMLIIAVLLAMSSLLSLFFYLRI 296
Cdd:TIGR01770 346 SYKDEWIEYisDFAGLFKTnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 8-296 3.96e-21

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 93.93  E-value: 3.96e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106   8 IIMPSLIMGPILTISSSHWILAWTGLEISTLAVIPLMA-QQHHPRAVEATTKYFLIQAAASTLILFSSITNAWTLGQWDI 86
Cdd:MTH00199 101 ILILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSI 180

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106  87 ----TQMSNTISCTILTTALAIKLGLAPFHFWLPEVLQGTTMTMAMILTTWQKLAPLSLLVMTSqsLNTLLLLMLGLMST 162
Cdd:MTH00199 181 qginSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIG--PVTNVVLICAVLSI 258

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 163 LIGGWGGLNQTQLRKIMAFSSIAHLGWMITILTL----STKLMLITFYMYVIITATMF-IMMKL-LETNKISTTMTSWTK 236
Cdd:MTH00199 259 IYGAIGALNQTKIKRLLAYSGIGHMGFILFGVAIgsfeSIQASLIYMIIYVIMSICSFsIILSLkLTKGLIVEVSGLSRK 338

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 237 LPTLNTMMMLTLMSLAGLPPLTGFMPKWLILQELAKQNMLIIAVLLAMSSLLSLFFYLRI 296
Cdd:MTH00199 339 NPVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 13-280 3.94e-20

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 90.59  E-value: 3.94e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106  13 LIMGPILTISSSHWILAWTGLEISTLAVIPLMAQQHHPRAVEATTKYFLIQAAASTLILFSSITNAWTLGQWDITQMSN- 91
Cdd:COG0651  116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAr 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106  92 ---------TISCTILTTALAIKLGLAPFHFWLPEVLQ----GTTMTMAMILTtwqKLAPLSLLVMTSQSLNTLLLLMLG 158
Cdd:COG0651  196 laeldpgllLAAFALLLVGFGIKAALFPLHFWLPDAYPaapsPVSALLSGLLT---KVGVYAILRVLTLLFGADPALFLG 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 159 LMSTL-------IGGWGGLNQTQLRKIMAFSSIAHLGWMITILTLSTKLMLITFYMYVI----ITATMF----IMMKLLE 223
Cdd:COG0651  273 TLLLVlglltmlVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLnhalAKALLFlaagAIERATG 352

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 134303106 224 TNKISTTMTSWTKLPTLNTMMMLTLMSLAGLPPLTGFMPKWLILQELAKQNMLIIAV 280
Cdd:COG0651  353 TRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAA 409
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 15-267 5.54e-15

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 76.05  E-value: 5.54e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106  15 MGPILTISSSHWILAWTGLEISTLAVIPLMAQQHHPRAV---------EATTKYFLIQAAASTLILFS------------ 73
Cdd:MTH00198 199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGcalyfgftgneg 278

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106  74 ---SITNAwTLGQWDITQMSNTISCTILTTALAIKLGLAPFHFWLPEVLQGT-TMTMAMILTTWQKLAplsLLVMTSQSL 149
Cdd:MTH00198 279 mlgTILSA-TLETTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGApTPTTALIAIIPKFTV---YILLTSLVI 354

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 150 NTLLLLMLGLMSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMITILTLSTKLMLITFYMYVII----TATMFIMMKLLETN 225
Cdd:MTH00198 355 TSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAVTylvsALASFTVICTLEEF 434

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 134303106 226 KISTT-----------------MTSWTKL----PTLNTMMMLTLMSLAGLPPLTGFMPKWLIL 267
Cdd:MTH00198 435 GTRTPtsrqrdgsfgnynlvrrLVDLTILsrgqPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 4-280 1.70e-10

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 61.88  E-value: 1.70e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106    4 YTNMIIMPSLIMGPILTISSSHWILAWtglEISTLAVIPLMAQQHHPRAVEATTKYFLIQAAASTLILFSSITNAW-TLG 82
Cdd:TIGR01972 109 YALLLLLEAGVIGVFLALDLFLFYVFW---EAMLIPMYLLIGVWGGPNRIYAAMKFFLYTLAGSLLMLLAILGLYFlGGG 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106   83 QWDITQMSNTISCTILTT--------ALAIKLGLAPFHFWLPEV-LQGTTMTMAMILTTWQKLAPLSL----LVMTSQSL 149
Cdd:TIGR01972 186 TFDLLELLNLPLPFGVQTwlflaffiAFAVKVPLFPLHTWLPDAhVEAPTAGSVILAGVLLKMGTYGFlrfnLPLFPDAS 265

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106  150 NTLLLLMLGLMSTLI--GGWGGLNQTQLRKIMAFSSIAHLGWMITILTLSTKLMLI--TFYMYV--IITATMFIMMKLLE 223
Cdd:TIGR01972 266 LYFAPVLAALGVIAIiyGALIALAQTDIKRLIAYSSISHMGFVLLGIFSFNELGISgaVFQMIShgLITAALFLLVGVLY 345

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 134303106  224 ----TNKISTTMTSWTKLPTLNTMMMLTLMSLAGLPPLTGFMPKWLILQELAKQNMLIIAV 280
Cdd:TIGR01972 346 erahTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLILLGSFKVNPVVAFL 406
ndhB CHL00049
NADH dehydrogenase subunit 2
 51-263 2.29e-09

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 58.48  E-value: 2.29e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106  51 RAVEATTKYFLIQAAASTLIL---------------FSSITNAWTLgqwdiTQMSNTISCTI----LTTALAIKLGLAPF 111
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVygfswlyglsggeieLQEIVNGLIN-----TQMYNSPGISIalifITVGIGFKLSLAPF 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 112 HFWLPEVLQGTTMTMAMILTTWQKLAPLSLLVMTSQSLNTLLLL-------MLGLMSTLIGGWGGLNQTQLRKIMAFSSI 184
Cdd:CHL00049 234 HQWTPDVYEGSPTPVVAFLSVTSKVAASALATRIFDIPFYFSSNewhllleILAILSMILGNLIAITQTSMKRMLAYSSI 313

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 185 AHLGW-MITILTLSTKL----MLITFYMYVIITATMFIMMKLLE----TNKISTTMTSWTKLPTLNTMMMLTLMSLAGLP 255
Cdd:CHL00049 314 GQIGYvIIGIIVGDSNDgyasMITYMLFYIFMNLGTFACIVLFGlrtgTDNIRDYAGLYTKDPFLALSLALCLLSLGGIP 393


                 ....*...
gi 134303106 256 PLTGFMPK 263
Cdd:CHL00049 394 PLAGFFGK 401
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-280 7.25e-09

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 57.01  E-value: 7.25e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106  49 HPRAVEATTKYFLIQAAASTLILFSSITNAWTLGQW--DITQMSNT-ISCTI-------LTTALAIKLGLAPFHFWLPEV 118
Cdd:COG1008  156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAApLPLTAqlllflaFFIAFAVKVPMFPFHTWLPDA 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 119 LQ----GTTMTMAMIL-----------------TTWQKLAPLsLLVMTsqslntllllmlgLMSTLIGGWGGLNQTQLRK 177
Cdd:COG1008  236 HVeaptAGSVLLAGVLlkmggygllrfalplfpEASAYFAPL-LAALG-------------VIGIIYGALVALAQTDLKR 301

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 178 IMAFSSIAHLGWMITILTLSTKLMLI--TFYM--YVIITATMFIMMKLLEtNKISTTMTS-----WTKLPTLNTMMMLTL 248
Cdd:COG1008  302 LIAYSSVSHMGFVLLGIFALNPLGLQgaVLQMvsHGLITAALFLLVGVLY-DRTHTRDIAdlgglAKRMPVLAALFLLAA 380

                        250       260       270
                 ....*....|....*....|....*....|..
gi 134303106 249 MSLAGLPPLTGFMPKWLILQELAKQNMLIIAV 280
Cdd:COG1008  381 LASLGLPGTSGFVGEFLVLLGAFQVNPWLAIL 412
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-299 9.88e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 56.43  E-value: 9.88e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106  33 LEISTLAVIPLMAQQHHPRAVEATTKYFLIQAAASTLILFSSI---TNAWTLGQWDITQMSN-----TISCTILTTALAI 104
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGllyGVTGTLNMADLAGALAenptvVTAFGFVLLALAL 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 105 KLGLAPFHFWLPEVLQGTTMT-MAMILTTWQK-----LAPLSLLVMTSQSLNTLLLLMLGLMSTL----IGGWGGLNQTQ 174
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPAAPPVvTALLSGLVTKvavyaLIRIYFTVFGGDFRFALGLGWLLAVLALlsmlVGSLAALGQDD 294

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 175 LRKIMAFSSIAHLGWMITILTLSTKLMLI--TFYM--YVIITATMFIMMKLLETNKISTTMTSWTKL----PTLNTMMML 246
Cdd:PRK08375 295 VKRVLAYSTVSQMGYILLGLALLTPLALAagLLHLlhHALMKGALFLAAGAIEVTYGTRRLSELSGLgrrmPLTAAAFAV 374

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 134303106 247 TLMSLAGLPPLTGFMPKWLILQELAKQNMLIIAVLLAMSSLLSLFFYLRISYY 299
Cdd:PRK08375 375 ASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYR 427
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 34-279 9.59e-08

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 53.46  E-value: 9.59e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106  34 EISTLAVIpLMAQQHHPRAVEATTKYFLIQAAASTLILFSSITNAWTLGQWDITQMSNT-ISCTILTTALAI-------- 104
Cdd:PRK08668 128 EIMTFSSF-MMVPMGKKESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFADISQGlINDTSTGFALIVflfllafg 206

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 105 --KLGLAPFHFWLPE-----------VLQGT---------TMTMAMILTTwqKLAPlSLLVMTSQSLNTLLLLMLGLMST 162
Cdd:PRK08668 207 vaKAGIFPLHVWAPDayseapqsfsaVLSGQlsklgaygfLLVLYVLPGT--KLFS-EFGTYRGVPLFNYILAWLGNISI 283

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 163 LIGGWGGLNQTQLRKIMAFSSIAHLGWMITILTLSTKLMLITFYMYVIITATMFIMMKLL--------ETNKISTTMTSW 234
Cdd:PRK08668 284 IVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLFHVFNHALFKGLFFLIfaaviyrtGTTKISEMGGLI 363

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 134303106 235 TKLPTLNTMMMLTLMSLAGLPPLTGFMPKWLILQELAKQNMLIIA 279
Cdd:PRK08668 364 EKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITA 408
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-263 9.70e-08

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 53.52  E-value: 9.70e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106  50 PRAVEATTKYFLIQAAASTLILF-SSITNAWTLGQWDITQMSNTISCT---ILTTAL-------AIKLGLAPFHFWLPEV 118
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGSTQLSAIALALITSpslGLALALvfviagiAFKISAVPFHQWTPDV 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 119 LQGTTMTMAMILTTWQKLAPLSLLV---------MTSQSLNTLLLLMLGLMStlIGGWGGLNQTQLRKIMAFSSIAHLGW 189
Cdd:PRK02504 237 YEGSPTPVVAFLSVGSKAAGFALAIrllvtafpsFDEQWKLLFTALAILSMV--LGNVVALAQTSMKRMLAYSSIGQAGF 314

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 190 -MITILT-----LSTKLMLITFYMYVIITATMFIMMKLLET--NKISTTMTSWTKLPTLNTMMMLTLMSLAGLPPLTGFM 261
Cdd:PRK02504 315 vMIGLVAgteagYASMVFYLLAYLFMNLGAFACVILFSLRTgtDQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFF 394


                 ..
gi 134303106 262 PK 263
Cdd:PRK02504 395 GK 396
PRK12650 PRK12650
DUF4040 family protein;
96-263 1.24e-06

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 50.43  E-value: 1.24e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106  96 TILTTALAIKLGLA--------PFHFWLPEVLQGTTMTMAMILTTWQKLAPLSLL-----VMTSQSLNTLLLLMLGLMST 162
Cdd:PRK12650 204 PGLTTVVAVLIAVAaftksaqfPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLlrfspVFHDVAVWNWLLIIVGMITA 283

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 163 LIGGWGGLNQTQLRKIMAFSSIAHLGWMITILTLSTKLMLITFYMYVIITA----TMFIMMKLLE----TNKISTTMTSW 234
Cdd:PRK12650 284 LMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTLAHAlfksSLFMLIGVVDhqagTRDIRRLGSLW 363

                        170       180
                 ....*....|....*....|....*....
gi 134303106 235 TKLPTLNTMMMLTLMSLAGLPPLTGFMPK 263
Cdd:PRK12650 364 RRMPFTFVSVTIAALSMAAVPPLFGFVSK 392
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-280 2.50e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 48.94  E-value: 2.50e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106  33 LEISTLAVIPLMAQQHH-PRAVEATTKYFLIQAAASTLILFSSitnAWTLGQWDITQMS-------------NTISCTIL 98
Cdd:PRK08376 150 LEIMSIASYALVAFRNDtWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTLNMAylavkmsenptvvAKIALALF 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106  99 TTALAIKLGLAPFHFWLPEVLQG--TTMTMAMILTTWQKLAPLSLLVMT------SQSLNTLLLLMLGLMSTLIGGWGGL 170
Cdd:PRK08376 227 IAGLAMKSGAVPVHMWLPDAYPAapSSISAMLLVIKQAGLYALARVLFSiygpaiNLATVGWVIIILGCLTMFVGVAMAV 306

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 171 NQTQLRKIMAFSSIAHLGWM-----ITILTLSTKLMLITFYM------YVIITATMFIMMKLLETNKISTTMTSWT---- 235
Cdd:PRK08376 307 VQKDVKRLLAYHSVSQIGYMllglgVGLAALGDPAMASYGEIalaggiYHIVNHALYKALLFLTAGAVIYETGTRNlnel 386

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 134303106 236 -----KLPTLNTMMMLTLMSLAGLPPLTGFMPKWLILQELAKQNMLIIAV 280
Cdd:PRK08376 387 gglarTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESSALFNPILGVI 436
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 44-298 2.68e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 48.81  E-value: 2.68e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106  44 MAQQHHPRAVEATTKYFLIQAAASTLILFS--SITNAW-TLGQWDITQMSNTISCTILTT------------------AL 102
Cdd:PRK12667 154 AYYRDRGDAVEAAIKYALIGAVGTTLYFLAlaFLYATFgTLNMADLSAKIRGLSFPLTGGlagnpplalgvalalalwAF 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 103 AIKLGLAPFHFWLPEV--------------------LQGTTMTMAMILTTWQKLAPLSLLVMtsqslntLLLLMLGLMST 162
Cdd:PRK12667 234 TIKAAIFPNHFWLPDAhpaapspvsamlsglvvnvgAYAIIRFLYTIFGISPSLIDFRAALS-------PILIILGAVSA 306

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 163 LIGGWGGLNQTQLRKIMAFSSIAHLGWMITILTLSTKLMLITFYMYVI----------ITATMFImmKLLETNKISTTMT 232
Cdd:PRK12667 307 IIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIInhaiaksllfLASGVFI--HAAGTRDIDELAG 384

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 134303106 233 SWTKLPTLNTMMMLTLMSLAGLPPLTGFMPKWLILQELAKQNMLIIAVLLAMSSLLSLFFYLRISY 298
Cdd:PRK12667 385 LGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWY 450
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 97-268 5.75e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 48.04  E-value: 5.75e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106  97 ILTTALAIKLGLAPFHFWLPE-----------VLQGTTMTM---AMILT---------TWQKLAPLSLLVMtsqslntll 153
Cdd:PRK12665 214 VLLVAFGIKAAVFPLSFWLPDsyptapapvtaVFAGLLTKVgvyAIIRThtllfpgggLDTLLMVVALLTM--------- 284

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 154 llmlglmstLIGGWGGLNQTQLRKIMAFSSIAHLGWMITILTLSTKLML--ITFYM--YVIITATMFIMMKLLETNKIST 229
Cdd:PRK12665 285 ---------VVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLsgAIYYVahHITVQTTLFLVVGLIERQAGSS 355

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 134303106 230 TMTSWTKL----PTLNTMMMLTLMSLAGLPPLTGFMPKWLILQ 268
Cdd:PRK12665 356 SLRRLGGLakasPLLAVLFFVPALNLGGIPPFSGFIGKVALLE 398
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 111-307 2.73e-05

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 45.84  E-value: 2.73e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 111 FHFWLPEVLQGTTMTMAMILTTWQKLAPLSLLVMTSQS-----LNTLLLLMLGLMSTLIGGWGGLNQTQLRKIMAFSSIA 185
Cdd:MTH00020 229 LHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPLfeqapLALIIVTIVGSLTVFFAATVGLVQNDLKKVIAYSTCS 308

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 186 HLGWMITILTLST------KLMLITFYMYVIITATMFIMMKLLETNKISTTMTSWTKLPTLNTMMMLTLMSLAGLPPLTG 259
Cdd:MTH00020 309 QLGYMVVACGLSHysislfHLMNHAFFKALLFLSAGSVIHALSDEQDMRKMGGLISFLPLTYIFFLIGSLSLMGFPYLTG 388

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 134303106 260 FMPKWLILQELAKQNMLIIAVLLAMSSLLSLFFY-LRISYYSTITLPPS 307
Cdd:MTH00020 389 FYSKDLILELAFGQYYLIFAYWLGCFSALLTAFYsIRLIYLTFLSNTNL 437
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
55-266 3.10e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 45.46  E-value: 3.10e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106  55 ATTKYFLIQAAASTLILFSSITNAWTLGQWDI---TQMSNTISCTI-------LTTALAIKLGLAPFHFWLPE------- 117
Cdd:PRK06473 158 AATKFLLYTAISGILILVSFLGLVWLSGASSFdyePLRSHTLPLSTqllllapILVGFGIKIPLVPFHTWLPDahveast 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 118 ----VLQGTTMT----------MAMILTTWQKLAP-LSLLVMTSqslntllllmlglmsTLIGGWGGLNQTQLRKIMAFS 182
Cdd:PRK06473 238 pvsvLLAGVLLKlgtygllrfgVGLFPEAWVYLAPwLATWAVVS---------------VLYGASCAIAQKDMKKMVAYS 302

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 183 SIAHLGWMITILTLSTKLMLITFYMYVI----ITATMFIMMKLL-------ETNKISTTMTSWTKLPTLNTMMMLTLMSL 251
Cdd:PRK06473 303 SIGHMGYILLAAAAATPLSILAAVFQMIshglISALLFLLVGVVykktgsrDVDVLRGLLNPERGLPITGSLMILGVMAS 382

                        250
                 ....*....|....*
gi 134303106 252 AGLPPLTGFMPKWLI 266
Cdd:PRK06473 383 AGIPGMVGFIAEFLV 397
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 28-271 5.55e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 44.75  E-value: 5.55e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106  28 LAWTGLEISTLAVIPLMAQQHHPRAVEATTKYFLIQAAA------STLILFSSITNAWTLGQWDITQMSN---------- 91
Cdd:PRK08676 126 LFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNWTELAAhasllspsvl 205

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106  92 TISCTILTTALAIKLGLAPFHFWLPE-----------VLQGTTMTMAMIlttwqKLAPLSLLVMTSQSLNTLLLLMLGLM 160
Cdd:PRK08676 206 GASFLFIFIGFLAKSGLVPFHTWLPAayakapsvvsaLLSGTVLNIGIY-----GILRLSALLRQSGAAEQFSNVLIGLG 280

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 161 STLIG--GWGGLNQTQLRKIMAFSSIAHLGWMITILTLSTKLML--ITFYM--YVIITATMFIMMKLLETNKISTTMTSW 234
Cdd:PRK08676 281 IFSIAvaAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALfwMLFHMlaHSLVKSGLFFSAGILHRQYRSDRFDRI 360

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 134303106 235 TKLPTLNTMMMLTLM----SLAGLPPLTGFMPKWLILQELA 271
Cdd:PRK08676 361 FDVFRLQPVAAWGVIlgsaAIIGMPPFPLFLSKFFILLQLG 401
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 97-263 7.72e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 44.53  E-value: 7.72e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106  97 ILTTALAiKLGLAPFHFWLPEVLQGTT----------MTMAMI------------LTTWQKLA-PLSLLVMtsqslntll 153
Cdd:PRK12644 209 ILVGALS-KSAIVPFHFWLPGAMAAPTpvsaylhaaaMVKAGIylvarlapgfadVPVWRPTVlVLGLATM--------- 278

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 154 llmlglmstLIGGWGGLNQTQLRKIMAFSSIAHLGWMITILTLSTK-------LMLITFYMYviiTATMFIMMKLLE--- 223
Cdd:PRK12644 279 ---------LLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRdaalaglAMLLAHALF---KAALFLVVGIIDhst 346

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 134303106 224 -TNKISTTMTSWTKLPTLNTMMMLTLMSLAGLPPLTGFMPK 263
Cdd:PRK12644 347 gTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 291-340 8.66e-05

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 39.55  E-value: 8.66e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 134303106  291 FFYLRISYYSTITLPPSPTSSSKQWRHKMNQKPY-LAMLTVLSMTLIPITP 340
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLlLPTLTTLSILLLPLTP 51
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 110-267 1.54e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 43.75  E-value: 1.54e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 110 PFHFWLPEV----------LQGTTMTMAMILTTwQKLAPlsllVMTSQSLNTLLLLMLGLMSTLIGGWGGLNQTQLRKIM 179
Cdd:PRK12647 213 PFHFWLPNAmeaptpvsayLHSATMVKAGIYLL-ARLNP----VLGGTPLWQTILPLFGGLTMLTGALLAVRQTDLKLIL 287

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 180 AFSSIAHLGWMITILTLSTKLMLITFYMYVII----TATMFIMMKLLETnkiSTTMTSWTKLPTLNTMMMLTLM------ 249
Cdd:PRK12647 288 AYSTVSALGTLVMLLGLGSELAIKAAVLFLVAhslyKGALFMVAGIIDH---ETGTRDITKLGGLRRAMPITAAaallaa 364

                        170
                 ....*....|....*....
gi 134303106 250 -SLAGLPPLTGFMPKWLIL 267
Cdd:PRK12647 365 lSMAGLPPLFGFLAKELIY 383
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 175-274 1.83e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 43.18  E-value: 1.83e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 175 LRKIMAFSSIAHLGWMITILTLSTKLMLITFYMYVI----ITATMFIMMKLLE----TNKISTTMTSWTKLPTLNTMMML 246
Cdd:PRK12662 303 IKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVnhsiVKSALFMVSGSISyhfgTTKLEDCLNLWKSMPKITLAFVL 382

                         90       100
                 ....*....|....*....|....*...
gi 134303106 247 TLMSLAGLPPLTGFMPKWLILQELAKQN 274
Cdd:PRK12662 383 LSLSLIGMPPTSGFVAKWYILDAFIKSN 410
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 111-268 1.90e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 43.41  E-value: 1.90e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 111 FHFWLPEVLQGTTMTMAMILTTWQKLAPLSLLVMT-----SQSLNTLLLLMLGLMSTLIGGWGGLNQTQLRKIMAFSSIA 185
Cdd:MTH00032 244 LHTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSfplfeKAPLTLLIITIFGALTAFFAATVGLVQNDLKKVIAYSTCS 323

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 186 HLGWMITILTL--STKLMLITFYMYVIITATMFIMMKLL--ETNKISTTMTSWTKL----PTLNTMMMLTLMSLAGLPPL 257
Cdd:MTH00032 324 QLGYMVLIIGIegSHNVGLFHLVNHAFFKALLFLSAGSVihSTTVDEQDMRKMGGLihsiPFTYTMMLIGSFSIMGLPYL 403

                        170
                 ....*....|.
gi 134303106 258 TGFMPKWLILQ 268
Cdd:MTH00032 404 TGFYSKDLILE 414
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
85-268 2.42e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 42.78  E-value: 2.42e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106  85 DITQMSNTISCTILTTALAIKLGLAPFHFWLPEVLQGTTMTMAMILT-TWQKLAPLSLLVMTSQS------LNTLLLLML 157
Cdd:PRK07363 198 NLSLNTQLILLTGLLLGFGIKIPLVPLHTWLPDAYTEASPAVAILLGgVLAKLGTYGLLRFGLQLfpqtwsLVAPGLAII 277

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 158 GLMSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMITILTLSTKLMLI----TFYMYVIITATMFIMMKLLET-------NK 226
Cdd:PRK07363 278 GTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAGTQLSLLgavaQMISHGLILALLFHLVGIVERkvgtrdlDV 357

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 134303106 227 ISTTMTSWTKLPTLNTMMMLTLMSLAGLPPLTGFMPKWLILQ 268
Cdd:PRK07363 358 LNGLMNPIRGLPLTSALLVLAGMASAGIPGLVGFVAEFIVFQ 399
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 164-270 3.75e-04

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 42.06  E-value: 3.75e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 164 IGGWGGLNQTQLRKIMAFSSIAHLGWMITILTLSTK----LMLIT--FYMyviitATMF----IMMKLLETNKIsTTMTS 233
Cdd:COG1009  288 FAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYvaalFHLLThaFFK-----ALLFlgagSVIHATGTRDI-RKMGG 361

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 134303106 234 -WTKLPTLNTMMMLTLMSLAGLPPLTGFMPKWLILQEL 270
Cdd:COG1009  362 lRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAA 399
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 170-330 5.07e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 41.94  E-value: 5.07e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 170 LNQTQLRKIMAFSSIAHLGWMITILTL-STKLMLITFYMYVIITATMFIMM-----KLLETNKISTTMTSWTKLPTLNTM 243
Cdd:MTH00209 258 NVESDLKKIIALSTLSQLGLMMCSLGLnQPELAFFHLITHALFKALLFICAgniihSHGHSQDIRMVGNLWYQMPITSIC 337

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 244 MMLTLMSLAGLPPLTGFMPKWLILQELAKQNMLIIAVLLAMSSLLSLFFY-LRISYYSTITLPPSPTSSSKQWRHKMNQK 322
Cdd:MTH00209 338 LNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTSLTAAYsMRLSYFSLWGPNSSKSLNSSFDQNKLNLK 417


                 ....*...
gi 134303106 323 PYLAMLTV 330
Cdd:MTH00209 418 PMLVLTLG 425
2a6301s01 TIGR00940
Tmonovalent cation:proton antiporter; This family of proteins constists of bacterial ...
 110-269 5.28e-04

Tmonovalent cation:proton antiporter; This family of proteins constists of bacterial multicomponent K+:H+ and Na+:H+ antiporters. The best characterized systems are the PhaABCDEFG system of Rhizobium meliloti which functions in pH adaptation and as a K+ efflux system and the MnhABCDEFG system of Staphylococcus aureus which functions as a Na+:H+ antiporter. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273353 [Multi-domain]  Cd Length: 793  Bit Score: 41.76  E-value: 5.28e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106  110 PFHFWLPEVLQGTTMTMAMILTTWQKLAPLSLL-----VMTSQSLNTLLLLMLGLMSTLIGGWGGLNQTQLRKIMAFSSI 184
Cdd:TIGR00940 224 PFHIWLPDAMEAPTPVSAYLHSATMVKAGLYLLarftpVFAGTEAWFWIVGLAGLITLLWGSYFAIFQQDLKGILAFSTI 303

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106  185 AHLGWMITILTL-STKLMLITFYMYVIITATMFIMMKLLE--TNKISTTMTS------------------WTKLPTLNTM 243
Cdd:TIGR00940 304 SQLGLIMVLLGLgSPSYHYQGDDSKIYALAAVAAVFHLINhaTFKGSLFMAAgiidhetgtrdirklgglFHIMPITFTL 383

                         170       180
                  ....*....|....*....|....*.
gi 134303106  244 MMLTLMSLAGLPPLTGFMPKWLILQE 269
Cdd:TIGR00940 384 AMIASAAMAGVPPFNGFLSKEMFFAE 409
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
34-308 2.07e-03

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 39.63  E-value: 2.07e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106  34 EISTLAVIPLMAQQHHPRAVEATTKYFLIQAAASTLILFSSITNAWTLGQWDITQMSNTI-----SCTILTTALAIKLGL 108
Cdd:PRK06277 130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDIHNALlvnptSPVIYGGLLLLIFGL 209

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 109 A------PFHFWLPEVLQGTTMTMAMILTTWQKLAPLSL-LVMTSQSLNTLLLLMLGLMSTLIGGWG-------GLNQTQ 174
Cdd:PRK06277 210 LygsglpPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALmLVIFKLFGGLSYFPSAQGVLIALSVLAmvfgvvmALLQTD 289

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 175 LRKIMAFSSIAHLGWMITILTLSTKLMLITFYMY----VIITATMFIMMKLLE----TNKISTTMTSWTKLPTLNTMMML 246
Cdd:PRK06277 290 YKRLLAYHAISQGGYVAAGLALGTPLGIVAGIFHainhVIYKSALFLGAGIVSyrtkTSNLRKLGGLLPVMPVVAFMVLC 369

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 134303106 247 TLMSLAGLPPLTGFMPKWLILQELAKQNMLIIAVLLAMSSLLSLFFYLRISYysTITLPPSP 308
Cdd:PRK06277 370 AKLAISGVPPFNGFQSKLMLAQAAMQANMPELAIIMIIVSIGTFVSMMKAFY--LIYLKPKP 429
ND2 MTH00091
NADH dehydrogenase subunit 2; Provisional
 102-278 3.72e-03

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177154  Cd Length: 273  Bit Score: 38.70  E-value: 3.72e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 102 LAIKLGLAPFHFWLPEVLQGTTMTMAMILTTWQKLAPLSLLVMtsqsLNTLLLLMLGLMSTLIGGWGGLNQTQLRKIMAF 181
Cdd:MTH00091  67 LMMKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVLLQ----FFSKNFFFLLLFGLLICFFQMFLLKSYKNLLIL 142

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 182 SSIAHLGWMITILTLS-TKLMLITFYMYVIItatMFIMMKLLETNKISttmtswtklpTLNTMMMLTLMSlagLPPLTGF 260
Cdd:MTH00091 143 SSTESFNWLILSFFFSfFNVFFLFFYYFLLM---LFLIPKFNNVNKLN----------FVSWETLLVFMN---LPFSVTF 206

                        170
                 ....*....|....*...
gi 134303106 261 MPKWLILQELAKQNMLII 278
Cdd:MTH00091 207 FVKIFSLSEILKVLGFFL 224
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 101-265 5.90e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 38.36  E-value: 5.90e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 101 ALAIKLGLAPFHFWLPEV-----LQGTTMTMAMILttwqKLAPLSLLVMT------SQSLNTLLLLMLGLMSTLIGGWGG 169
Cdd:MTH00226 239 AMAVKIPIFPFHIWLPKAhveapVAGSVLLAGILL----KLGGYGLVRLSwpilplGAQNLAPAVIAMGIVGIVYGSFAT 314

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 170 LNQTQLRKIMAFSSIAHLGwMITILTLSTKLMLITFYMYV-----IITATMFIMMKLL----ETNKISTTMTSWTKLPTL 240
Cdd:MTH00226 315 CRQIDVKRLVAYSSVAHMG-LVSITLVTHDIIGLTGSIFImlahgIVSSLLFILVTILydrhHTRLIKYYRGLSITMPIW 393

                        170       180
                 ....*....|....*....|....*
gi 134303106 241 NTMMMLTLMSLAGLPPLTGFMPKWL 265
Cdd:MTH00226 394 GTIMIVTSLANVAVPPSGNFIGEYL 418
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 33-296 6.18e-03

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 38.21  E-value: 6.18e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106  33 LEISTLAVIPLMAQQHHPRAVEATTKYFLIQAAAST--LILFSSITNAW-TLGQWDITQMSNTISCTILTTALA-IKLGL 108
Cdd:PRK08377 137 MEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSffLIGVALIYGATgTLNMAHIAQLAGTIDPTVAQVGLAlLIFGL 216

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 109 A------PFHFWLPEVLQGTTMTMAMILTTWQKLAPL--------SLLVMTSQSLNTLLLLMLGLMSTLIGGWGGLNQTQ 174
Cdd:PRK08377 217 AveaelfPLNAWAPDAYQAAPHPITVMFSAFVVKAGLyamarilyLMQNANGWSSVLKLVIIMATLTVFFAELSALRQKN 296

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 175 LRKIMAFSSIAHLGWMITILTLSTKLML--ITFYM--YVIITATMFIMMKL----LETNKISTTMTSWTKLPTLNTMMML 246
Cdd:PRK08377 297 VKRMIAYSSIGQVGMIALALALGTQAGVdaGVFHMinHAIVKALLFLAVGYvgitLGGTEIEKFEGLGKRMPLTALALTI 376

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 134303106 247 TLMSLAGLPPLTGFMPKWLILQELAKQNMLIIAVLLAMSSLLSLFFYLRI 296
Cdd:PRK08377 377 GALSTVGIPLFNVFWSKFRIILAGLSAGYTWPVALVLGASVVEAVYYFRL 426
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-280 6.85e-03

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 38.26  E-value: 6.85e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106  50 PRAVEATTKYFLIQAAASTLILFSSITNAWT----LGQWDITQ-MSNTISCTILT-------TALAIKLGLAPFHFWLP- 116
Cdd:PRK05846 157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADlLNLPLPPGVQYwlflaffIAFAVKMPMFPLHTWLPd 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 117 ---EVLQGTTMTMAMILTtwqKLAPLSL----LVMTSQSLNTLLLLMLGLMSTLI--GGWGGLNQTQLRKIMAFSSIAHL 187
Cdd:PRK05846 237 ahvQAPTAGSVLLAGILL---KMGAYGLlrfsLPLFPDASHEFAPIIITLGVIAIiyGALVALAQTDIKKLIAYSSISHM 313

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 188 GWMITILTLSTKLML--ITFYM--YVIITATMFIMMKLLETNKISTTMTS----WTKLPTLNTMMMLTLMSLAGLPPLTG 259
Cdd:PRK05846 314 GFVTLGIFAGNQLGIqgAIFQMisHGLSSAALFLLVGVLYDRLHTRDIADygglAKVMPVLAAFFLFFAMASLGLPGTSG 393

                        250       260
                 ....*....|....*....|.
gi 134303106 260 FMPKWLILQELAKQNMLIIAV 280
Cdd:PRK05846 394 FVGEFLILLGSFQVNPVIAFI 414
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
164-268 7.00e-03

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 38.01  E-value: 7.00e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134303106 164 IGGWGGLNQTQLRKIMAFSSIAHLGWMITILTLSTKLML---ITFYMYVIITATMF-----IMMKLLETNKISTTMTSWT 235
Cdd:PRK12663 285 IGALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGIngaIFYLVHDMVVKTALfliagSLVRLTGYRSLQYLGGLYR 364

                         90       100       110
                 ....*....|....*....|....*....|...
gi 134303106 236 KLPTLNTMMMLTLMSLAGLPPLTGFMPKWLILQ 268
Cdd:PRK12663 365 KEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQ 397
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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